##gff-version 3
HG003_chrY	CAT	gene	68114	69817	.	-	.	source_gene_common_name=LOC124905300;source_gene=hg002_chrY_paternal_1;alternative_source_transcripts=hg002_chrY_paternal_1.1,hg002_chrY_paternal_1.1;gene_id=HG003_chrY_G0000001;gene_biotype=protein_coding;gene_name=LOC124905300;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000001;Name=LOC124905300
HG003_chrY	CAT	transcript	68114	69817	100	-	.	source_transcript=hg002_chrY_paternal_1.1;source_transcript_name=hg002_chrY_paternal_1.1;source_gene=hg002_chrY_paternal_1;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_1.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_1.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905300;alternative_source_transcripts=hg002_chrY_paternal_1.1,hg002_chrY_paternal_1.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000001;gene_id=HG003_chrY_G0000001;Parent=HG003_chrY_G0000001;transcript_name=hg002_chrY_paternal_1.1;gene_name=LOC124905300;ID=HG003_chrY_T0000001;Name=LOC124905300
HG003_chrY	CAT	exon	68114	68641	.	-	.	source_transcript=hg002_chrY_paternal_1.1;source_transcript_name=hg002_chrY_paternal_1.1;source_gene=hg002_chrY_paternal_1;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_1.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_1.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905300;alternative_source_transcripts=hg002_chrY_paternal_1.1,hg002_chrY_paternal_1.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000001;gene_id=HG003_chrY_G0000001;Parent=HG003_chrY_T0000001;transcript_name=hg002_chrY_paternal_1.1;gene_name=LOC124905300;ID=exon:HG003_chrY_T0000001:0;Name=LOC124905300;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	68114	68641	.	-	0	source_transcript=hg002_chrY_paternal_1.1;source_transcript_name=hg002_chrY_paternal_1.1;source_gene=hg002_chrY_paternal_1;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_1.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_1.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905300;alternative_source_transcripts=hg002_chrY_paternal_1.1,hg002_chrY_paternal_1.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000001;gene_id=HG003_chrY_G0000001;Parent=HG003_chrY_T0000001;transcript_name=hg002_chrY_paternal_1.1;gene_name=LOC124905300;ID=CDS:HG003_chrY_T0000001:0;Name=LOC124905300;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	68114	68116	.	-	0	source_transcript=hg002_chrY_paternal_1.1;source_transcript_name=hg002_chrY_paternal_1.1;source_gene=hg002_chrY_paternal_1;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_1.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_1.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905300;alternative_source_transcripts=hg002_chrY_paternal_1.1,hg002_chrY_paternal_1.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000001;gene_id=HG003_chrY_G0000001;Parent=HG003_chrY_T0000001;transcript_name=hg002_chrY_paternal_1.1;gene_name=LOC124905300;ID=stop_codon:HG003_chrY_T0000001;Name=LOC124905300;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	68642	68881	.	-	.	source_transcript=hg002_chrY_paternal_1.1;source_transcript_name=hg002_chrY_paternal_1.1;source_gene=hg002_chrY_paternal_1;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_1.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_1.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905300;alternative_source_transcripts=hg002_chrY_paternal_1.1,hg002_chrY_paternal_1.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000001;gene_id=HG003_chrY_G0000001;Parent=HG003_chrY_T0000001;transcript_name=hg002_chrY_paternal_1.1;gene_name=LOC124905300;ID=intron:HG003_chrY_T0000001:0;Name=LOC124905300;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	68882	69252	.	-	.	source_transcript=hg002_chrY_paternal_1.1;source_transcript_name=hg002_chrY_paternal_1.1;source_gene=hg002_chrY_paternal_1;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_1.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_1.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905300;alternative_source_transcripts=hg002_chrY_paternal_1.1,hg002_chrY_paternal_1.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000001;gene_id=HG003_chrY_G0000001;Parent=HG003_chrY_T0000001;transcript_name=hg002_chrY_paternal_1.1;gene_name=LOC124905300;ID=exon:HG003_chrY_T0000001:1;Name=LOC124905300;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	68882	69252	.	-	2	source_transcript=hg002_chrY_paternal_1.1;source_transcript_name=hg002_chrY_paternal_1.1;source_gene=hg002_chrY_paternal_1;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_1.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_1.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905300;alternative_source_transcripts=hg002_chrY_paternal_1.1,hg002_chrY_paternal_1.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000001;gene_id=HG003_chrY_G0000001;Parent=HG003_chrY_T0000001;transcript_name=hg002_chrY_paternal_1.1;gene_name=LOC124905300;ID=CDS:HG003_chrY_T0000001:1;Name=LOC124905300;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	69253	69559	.	-	.	source_transcript=hg002_chrY_paternal_1.1;source_transcript_name=hg002_chrY_paternal_1.1;source_gene=hg002_chrY_paternal_1;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_1.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_1.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905300;alternative_source_transcripts=hg002_chrY_paternal_1.1,hg002_chrY_paternal_1.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000001;gene_id=HG003_chrY_G0000001;Parent=HG003_chrY_T0000001;transcript_name=hg002_chrY_paternal_1.1;gene_name=LOC124905300;ID=intron:HG003_chrY_T0000001:1;Name=LOC124905300;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	69560	69597	.	-	.	source_transcript=hg002_chrY_paternal_1.1;source_transcript_name=hg002_chrY_paternal_1.1;source_gene=hg002_chrY_paternal_1;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_1.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_1.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905300;alternative_source_transcripts=hg002_chrY_paternal_1.1,hg002_chrY_paternal_1.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000001;gene_id=HG003_chrY_G0000001;Parent=HG003_chrY_T0000001;transcript_name=hg002_chrY_paternal_1.1;gene_name=LOC124905300;ID=exon:HG003_chrY_T0000001:2;Name=LOC124905300;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	69560	69597	.	-	1	source_transcript=hg002_chrY_paternal_1.1;source_transcript_name=hg002_chrY_paternal_1.1;source_gene=hg002_chrY_paternal_1;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_1.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_1.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905300;alternative_source_transcripts=hg002_chrY_paternal_1.1,hg002_chrY_paternal_1.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000001;gene_id=HG003_chrY_G0000001;Parent=HG003_chrY_T0000001;transcript_name=hg002_chrY_paternal_1.1;gene_name=LOC124905300;ID=CDS:HG003_chrY_T0000001:2;Name=LOC124905300;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	69598	69776	.	-	.	source_transcript=hg002_chrY_paternal_1.1;source_transcript_name=hg002_chrY_paternal_1.1;source_gene=hg002_chrY_paternal_1;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_1.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_1.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905300;alternative_source_transcripts=hg002_chrY_paternal_1.1,hg002_chrY_paternal_1.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000001;gene_id=HG003_chrY_G0000001;Parent=HG003_chrY_T0000001;transcript_name=hg002_chrY_paternal_1.1;gene_name=LOC124905300;ID=intron:HG003_chrY_T0000001:2;Name=LOC124905300;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	69777	69817	.	-	.	source_transcript=hg002_chrY_paternal_1.1;source_transcript_name=hg002_chrY_paternal_1.1;source_gene=hg002_chrY_paternal_1;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_1.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_1.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905300;alternative_source_transcripts=hg002_chrY_paternal_1.1,hg002_chrY_paternal_1.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000001;gene_id=HG003_chrY_G0000001;Parent=HG003_chrY_T0000001;transcript_name=hg002_chrY_paternal_1.1;gene_name=LOC124905300;ID=exon:HG003_chrY_T0000001:3;Name=LOC124905300;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	69777	69817	.	-	0	source_transcript=hg002_chrY_paternal_1.1;source_transcript_name=hg002_chrY_paternal_1.1;source_gene=hg002_chrY_paternal_1;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_1.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_1.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905300;alternative_source_transcripts=hg002_chrY_paternal_1.1,hg002_chrY_paternal_1.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000001;gene_id=HG003_chrY_G0000001;Parent=HG003_chrY_T0000001;transcript_name=hg002_chrY_paternal_1.1;gene_name=LOC124905300;ID=CDS:HG003_chrY_T0000001:3;Name=LOC124905300;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	69815	69817	.	-	0	source_transcript=hg002_chrY_paternal_1.1;source_transcript_name=hg002_chrY_paternal_1.1;source_gene=hg002_chrY_paternal_1;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_1.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_1.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905300;alternative_source_transcripts=hg002_chrY_paternal_1.1,hg002_chrY_paternal_1.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000001;gene_id=HG003_chrY_G0000001;Parent=HG003_chrY_T0000001;transcript_name=hg002_chrY_paternal_1.1;gene_name=LOC124905300;ID=start_codon:HG003_chrY_T0000001;Name=LOC124905300;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	76397	96217	.	+	.	source_gene_common_name=PLCXD1;source_gene=hg002_chrY_paternal_2;gene_id=HG003_chrY_G0000002;gene_biotype=protein_coding;gene_name=PLCXD1;gene_sources=liftoff,augTM,transMap;ID=HG003_chrY_G0000002;Name=PLCXD1
HG003_chrY	CAT	transcript	76397	96217	9920	+	.	source_transcript=hg002_chrY_paternal_2.10;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.10;transcript_score=216.56366666666665;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000002;gene_id=HG003_chrY_G0000002;Parent=HG003_chrY_G0000002;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=HG003_chrY_T0000002;Name=PLCXD1
HG003_chrY	CAT	exon	76397	76511	.	+	.	source_transcript=hg002_chrY_paternal_2.10;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.10;transcript_score=216.56366666666665;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000002;gene_id=HG003_chrY_G0000002;Parent=HG003_chrY_T0000002;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000002:0;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	76512	77045	.	+	.	source_transcript=hg002_chrY_paternal_2.10;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.10;transcript_score=216.56366666666665;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000002;gene_id=HG003_chrY_G0000002;Parent=HG003_chrY_T0000002;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=intron:HG003_chrY_T0000002:0;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	77046	77193	.	+	.	source_transcript=hg002_chrY_paternal_2.10;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.10;transcript_score=216.56366666666665;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000002;gene_id=HG003_chrY_G0000002;Parent=HG003_chrY_T0000002;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000002:1;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	77067	77193	.	+	0	source_transcript=hg002_chrY_paternal_2.10;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.10;transcript_score=216.56366666666665;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000002;gene_id=HG003_chrY_G0000002;Parent=HG003_chrY_T0000002;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=CDS:HG003_chrY_T0000002:0;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	77067	77069	.	+	0	source_transcript=hg002_chrY_paternal_2.10;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.10;transcript_score=216.56366666666665;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000002;gene_id=HG003_chrY_G0000002;Parent=HG003_chrY_T0000002;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=start_codon:HG003_chrY_T0000002;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	77194	81603	.	+	.	source_transcript=hg002_chrY_paternal_2.10;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.10;transcript_score=216.56366666666665;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000002;gene_id=HG003_chrY_G0000002;Parent=HG003_chrY_T0000002;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=intron:HG003_chrY_T0000002:1;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	81604	81740	.	+	.	source_transcript=hg002_chrY_paternal_2.10;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.10;transcript_score=216.56366666666665;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000002;gene_id=HG003_chrY_G0000002;Parent=HG003_chrY_T0000002;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000002:2;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	81604	81740	.	+	2	source_transcript=hg002_chrY_paternal_2.10;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.10;transcript_score=216.56366666666665;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000002;gene_id=HG003_chrY_G0000002;Parent=HG003_chrY_T0000002;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=CDS:HG003_chrY_T0000002:1;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	81741	83518	.	+	.	source_transcript=hg002_chrY_paternal_2.10;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.10;transcript_score=216.56366666666665;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000002;gene_id=HG003_chrY_G0000002;Parent=HG003_chrY_T0000002;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=intron:HG003_chrY_T0000002:2;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	83519	83647	.	+	.	source_transcript=hg002_chrY_paternal_2.10;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.10;transcript_score=216.56366666666665;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000002;gene_id=HG003_chrY_G0000002;Parent=HG003_chrY_T0000002;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000002:3;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	83519	83647	.	+	0	source_transcript=hg002_chrY_paternal_2.10;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.10;transcript_score=216.56366666666665;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000002;gene_id=HG003_chrY_G0000002;Parent=HG003_chrY_T0000002;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=CDS:HG003_chrY_T0000002:2;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	83648	84369	.	+	.	source_transcript=hg002_chrY_paternal_2.10;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.10;transcript_score=216.56366666666665;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000002;gene_id=HG003_chrY_G0000002;Parent=HG003_chrY_T0000002;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=intron:HG003_chrY_T0000002:3;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	84370	84525	.	+	.	source_transcript=hg002_chrY_paternal_2.10;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.10;transcript_score=216.56366666666665;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000002;gene_id=HG003_chrY_G0000002;Parent=HG003_chrY_T0000002;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000002:4;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	84370	84525	.	+	0	source_transcript=hg002_chrY_paternal_2.10;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.10;transcript_score=216.56366666666665;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000002;gene_id=HG003_chrY_G0000002;Parent=HG003_chrY_T0000002;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=CDS:HG003_chrY_T0000002:3;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	84526	85905	.	+	.	source_transcript=hg002_chrY_paternal_2.10;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.10;transcript_score=216.56366666666665;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000002;gene_id=HG003_chrY_G0000002;Parent=HG003_chrY_T0000002;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=intron:HG003_chrY_T0000002:4;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	85906	86089	.	+	.	source_transcript=hg002_chrY_paternal_2.10;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.10;transcript_score=216.56366666666665;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000002;gene_id=HG003_chrY_G0000002;Parent=HG003_chrY_T0000002;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000002:5;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	85906	86089	.	+	0	source_transcript=hg002_chrY_paternal_2.10;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.10;transcript_score=216.56366666666665;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000002;gene_id=HG003_chrY_G0000002;Parent=HG003_chrY_T0000002;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=CDS:HG003_chrY_T0000002:4;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	86090	91967	.	+	.	source_transcript=hg002_chrY_paternal_2.10;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.10;transcript_score=216.56366666666665;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000002;gene_id=HG003_chrY_G0000002;Parent=HG003_chrY_T0000002;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=intron:HG003_chrY_T0000002:5;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	91968	96217	.	+	.	source_transcript=hg002_chrY_paternal_2.10;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.10;transcript_score=216.56366666666665;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000002;gene_id=HG003_chrY_G0000002;Parent=HG003_chrY_T0000002;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000002:6;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	91968	92206	.	+	2	source_transcript=hg002_chrY_paternal_2.10;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.10;transcript_score=216.56366666666665;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000002;gene_id=HG003_chrY_G0000002;Parent=HG003_chrY_T0000002;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=CDS:HG003_chrY_T0000002:5;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	92204	92206	.	+	0	source_transcript=hg002_chrY_paternal_2.10;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.10;transcript_score=216.56366666666665;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000002;gene_id=HG003_chrY_G0000002;Parent=HG003_chrY_T0000002;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=stop_codon:HG003_chrY_T0000002;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	97621	115465	.	-	.	source_gene_common_name=GTPBP6;source_gene=hg002_chrY_paternal_3;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;gene_id=HG003_chrY_G0000003;gene_biotype=protein_coding;gene_name=GTPBP6;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000003;Name=GTPBP6
HG003_chrY	CAT	transcript	97621	113524	100	-	.	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_G0000003;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=HG003_chrY_T0000003;Name=GTPBP6
HG003_chrY	CAT	exon	97621	98059	.	-	.	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000003:0;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	97936	98059	.	-	1	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000003:0;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	97936	97938	.	-	0	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=stop_codon:HG003_chrY_T0000003;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	98060	100169	.	-	.	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000003:0;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	100170	100322	.	-	.	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000003:1;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	100170	100322	.	-	1	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000003:1;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	100323	100541	.	-	.	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000003:1;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	100542	100690	.	-	.	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000003:2;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	100542	100690	.	-	0	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000003:2;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	100691	105348	.	-	.	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000003:2;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	105349	105557	.	-	.	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000003:3;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	105349	105557	.	-	2	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000003:3;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	105558	106555	.	-	.	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000003:3;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	106556	106954	.	-	.	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000003:4;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	106556	106954	.	-	2	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000003:4;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	106955	108179	.	-	.	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000003:4;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	108180	108247	.	-	.	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000003:5;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	108180	108247	.	-	1	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000003:5;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	108248	108919	.	-	.	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000003:5;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	108920	109050	.	-	.	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000003:6;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	108920	109050	.	-	0	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000003:6;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	109051	109255	.	-	.	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000003:6;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	109256	109326	.	-	.	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000003:7;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	109256	109273	.	-	0	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000003:7;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	109271	109273	.	-	0	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=start_codon:HG003_chrY_T0000003;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	109327	113458	.	-	.	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000003:7;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	113459	113524	.	-	.	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000003:8;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	97621	115465	100	-	.	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000004;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_G0000003;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=HG003_chrY_T0000004;Name=GTPBP6
HG003_chrY	CAT	exon	97621	98059	.	-	.	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000004;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000004;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000004:0;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	97936	98059	.	-	1	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000004;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000004;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000004:0;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	97936	97938	.	-	0	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000004;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000004;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=stop_codon:HG003_chrY_T0000004;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	98060	100169	.	-	.	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000004;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000004;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000004:0;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	100170	100322	.	-	.	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000004;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000004;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000004:1;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	100170	100322	.	-	1	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000004;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000004;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000004:1;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	100323	100541	.	-	.	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000004;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000004;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000004:1;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	100542	100690	.	-	.	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000004;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000004;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000004:2;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	100542	100690	.	-	0	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000004;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000004;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000004:2;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	100691	105348	.	-	.	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000004;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000004;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000004:2;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	105349	105557	.	-	.	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000004;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000004;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000004:3;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	105349	105557	.	-	2	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000004;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000004;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000004:3;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	105558	106795	.	-	.	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000004;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000004;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000004:3;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	106796	106954	.	-	.	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000004;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000004;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000004:4;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	106796	106954	.	-	2	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000004;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000004;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000004:4;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	106955	108179	.	-	.	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000004;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000004;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000004:4;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	108180	108247	.	-	.	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000004;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000004;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000004:5;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	108180	108247	.	-	1	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000004;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000004;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000004:5;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	108248	108919	.	-	.	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000004;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000004;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000004:5;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	108920	109050	.	-	.	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000004;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000004;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000004:6;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	108920	109050	.	-	0	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000004;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000004;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000004:6;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	109051	109255	.	-	.	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000004;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000004;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000004:6;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	109256	109326	.	-	.	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000004;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000004;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000004:7;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	109256	109326	.	-	2	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000004;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000004;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000004:7;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	109327	113592	.	-	.	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000004;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000004;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000004:7;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	113593	113730	.	-	.	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000004;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000004;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000004:8;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	113593	113730	.	-	2	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000004;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000004;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000004:8;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	113731	115107	.	-	.	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000004;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000004;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000004:8;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	115108	115465	.	-	.	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000004;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000004;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000004:9;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	115108	115456	.	-	0	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000004;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000004;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000004:9;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	115454	115456	.	-	0	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000004;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000004;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=start_codon:HG003_chrY_T0000004;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	97621	115465	100	-	.	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000005;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_G0000003;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=HG003_chrY_T0000005;Name=GTPBP6
HG003_chrY	CAT	exon	97621	98059	.	-	.	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000005;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000005:0;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	97936	98059	.	-	1	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000005;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000005:0;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	97936	97938	.	-	0	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000005;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=stop_codon:HG003_chrY_T0000005;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	98060	100169	.	-	.	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000005;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000005:0;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	100170	100322	.	-	.	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000005;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000005:1;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	100170	100322	.	-	1	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000005;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000005:1;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	100323	100541	.	-	.	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000005;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000005:1;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	100542	100690	.	-	.	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000005;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000005:2;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	100542	100690	.	-	0	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000005;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000005:2;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	100691	105348	.	-	.	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000005;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000005:2;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	105349	105557	.	-	.	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000005;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000005:3;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	105349	105557	.	-	2	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000005;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000005:3;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	105558	106555	.	-	.	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000005;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000005:3;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	106556	106954	.	-	.	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000005;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000005:4;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	106556	106954	.	-	2	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000005;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000005:4;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	106955	108179	.	-	.	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000005;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000005:4;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	108180	108247	.	-	.	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000005;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000005:5;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	108180	108247	.	-	1	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000005;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000005:5;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	108248	108919	.	-	.	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000005;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000005:5;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	108920	109050	.	-	.	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000005;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000005:6;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	108920	109050	.	-	0	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000005;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000005:6;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	109051	109255	.	-	.	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000005;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000005:6;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	109256	109326	.	-	.	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000005;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000005:7;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	109256	109326	.	-	2	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000005;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000005:7;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	109327	113592	.	-	.	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000005;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000005:7;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	113593	113730	.	-	.	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000005;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000005:8;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	113593	113730	.	-	2	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000005;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000005:8;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	113731	115107	.	-	.	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000005;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000005:8;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	115108	115465	.	-	.	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000005;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000005:9;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	115108	115456	.	-	0	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000005;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000005:9;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	115454	115456	.	-	0	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000005;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=start_codon:HG003_chrY_T0000005;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	97621	115465	100	-	.	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000006;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_G0000003;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=HG003_chrY_T0000006;Name=GTPBP6
HG003_chrY	CAT	exon	97621	98059	.	-	.	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000006;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000006:0;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	97936	98059	.	-	1	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000006;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000006:0;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	97936	97938	.	-	0	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000006;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=stop_codon:HG003_chrY_T0000006;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	98060	100169	.	-	.	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000006;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000006:0;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	100170	100322	.	-	.	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000006;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000006:1;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	100170	100322	.	-	1	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000006;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000006:1;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	100323	100541	.	-	.	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000006;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000006:1;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	100542	100690	.	-	.	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000006;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000006:2;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	100542	100690	.	-	0	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000006;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000006:2;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	100691	105348	.	-	.	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000006;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000006:2;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	105349	105557	.	-	.	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000006;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000006:3;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	105349	105557	.	-	2	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000006;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000006:3;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	105558	106555	.	-	.	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000006;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000006:3;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	106556	106954	.	-	.	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000006;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000006:4;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	106556	106954	.	-	2	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000006;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000006:4;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	106955	108179	.	-	.	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000006;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000006:4;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	108180	108247	.	-	.	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000006;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000006:5;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	108180	108247	.	-	1	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000006;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000006:5;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	108248	108919	.	-	.	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000006;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000006:5;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	108920	109050	.	-	.	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000006;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000006:6;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	108920	109050	.	-	0	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000006;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000006:6;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	109051	109255	.	-	.	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000006;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000006:6;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	109256	109326	.	-	.	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000006;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000006:7;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	109256	109326	.	-	2	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000006;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000006:7;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	109327	113592	.	-	.	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000006;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000006:7;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	113593	113730	.	-	.	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000006;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000006:8;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	113593	113662	.	-	0	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000006;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000006:8;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	113660	113662	.	-	0	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000006;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=start_codon:HG003_chrY_T0000006;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	113731	113957	.	-	.	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000006;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000006:8;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	113958	114163	.	-	.	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000006;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000006:9;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	114164	115107	.	-	.	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000006;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000006:9;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	115108	115465	.	-	.	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000006;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000006:10;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	97621	115465	100	-	.	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000007;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_G0000003;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=HG003_chrY_T0000007;Name=GTPBP6
HG003_chrY	CAT	exon	97621	98059	.	-	.	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000007;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000007:0;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	97936	98059	.	-	1	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000007;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000007:0;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	97936	97938	.	-	0	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000007;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=stop_codon:HG003_chrY_T0000007;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	98060	100169	.	-	.	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000007;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000007:0;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	100170	100322	.	-	.	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000007;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000007:1;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	100170	100322	.	-	1	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000007;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000007:1;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	100323	100541	.	-	.	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000007;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000007:1;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	100542	100690	.	-	.	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000007;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000007:2;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	100542	100690	.	-	0	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000007;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000007:2;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	100691	105348	.	-	.	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000007;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000007:2;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	105349	105557	.	-	.	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000007;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000007:3;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	105349	105557	.	-	2	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000007;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000007:3;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	105558	106555	.	-	.	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000007;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000007:3;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	106556	106954	.	-	.	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000007;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000007:4;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	106556	106954	.	-	2	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000007;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000007:4;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	106955	108179	.	-	.	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000007;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000007:4;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	108180	108247	.	-	.	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000007;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000007:5;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	108180	108247	.	-	1	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000007;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000007:5;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	108248	108919	.	-	.	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000007;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000007:5;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	108920	109050	.	-	.	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000007;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000007:6;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	108920	109050	.	-	0	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000007;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000007:6;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	109051	109255	.	-	.	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000007;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000007:6;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	109256	109326	.	-	.	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000007;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000007:7;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	109256	109326	.	-	2	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000007;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000007:7;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	109327	113592	.	-	.	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000007;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000007:7;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	113593	113730	.	-	.	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000007;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000007:8;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	113593	113662	.	-	0	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000007;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000007:8;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	113660	113662	.	-	0	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000007;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=start_codon:HG003_chrY_T0000007;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	113731	113957	.	-	.	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000007;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000007:8;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	113958	114098	.	-	.	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000007;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000007:9;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	114099	115107	.	-	.	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000007;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000007:9;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	115108	115465	.	-	.	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000007;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000007:10;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	115814	118001	.	+	.	source_gene_common_name=LINC00685;source_gene=hg002_chrY_paternal_4;alternative_source_transcripts=hg002_chrY_paternal_4.1,hg002_chrY_paternal_4.1;gene_id=HG003_chrY_G0000004;gene_biotype=lncRNA;gene_name=LINC00685;gene_sources=liftoff;ID=HG003_chrY_G0000004;Name=LINC00685
HG003_chrY	CAT	transcript	115814	118001	1000	+	.	source_transcript=hg002_chrY_paternal_4.1;source_transcript_name=hg002_chrY_paternal_4.1;source_gene=hg002_chrY_paternal_4;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_4;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_4.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_4.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00685;alternative_source_transcripts=hg002_chrY_paternal_4.1,hg002_chrY_paternal_4.1;transcript_id=HG003_chrY_T0000008;gene_id=HG003_chrY_G0000004;Parent=HG003_chrY_G0000004;transcript_name=hg002_chrY_paternal_4.1;gene_name=LINC00685;ID=HG003_chrY_T0000008;Name=LINC00685
HG003_chrY	CAT	exon	115814	116220	.	+	.	source_transcript=hg002_chrY_paternal_4.1;source_transcript_name=hg002_chrY_paternal_4.1;source_gene=hg002_chrY_paternal_4;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_4;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_4.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_4.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00685;alternative_source_transcripts=hg002_chrY_paternal_4.1,hg002_chrY_paternal_4.1;transcript_id=HG003_chrY_T0000008;gene_id=HG003_chrY_G0000004;Parent=HG003_chrY_T0000008;transcript_name=hg002_chrY_paternal_4.1;gene_name=LINC00685;ID=exon:HG003_chrY_T0000008:0;Name=LINC00685;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	116221	116876	.	+	.	source_transcript=hg002_chrY_paternal_4.1;source_transcript_name=hg002_chrY_paternal_4.1;source_gene=hg002_chrY_paternal_4;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_4;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_4.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_4.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00685;alternative_source_transcripts=hg002_chrY_paternal_4.1,hg002_chrY_paternal_4.1;transcript_id=HG003_chrY_T0000008;gene_id=HG003_chrY_G0000004;Parent=HG003_chrY_T0000008;transcript_name=hg002_chrY_paternal_4.1;gene_name=LINC00685;ID=intron:HG003_chrY_T0000008:0;Name=LINC00685;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	116877	118001	.	+	.	source_transcript=hg002_chrY_paternal_4.1;source_transcript_name=hg002_chrY_paternal_4.1;source_gene=hg002_chrY_paternal_4;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_4;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_4.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_4.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00685;alternative_source_transcripts=hg002_chrY_paternal_4.1,hg002_chrY_paternal_4.1;transcript_id=HG003_chrY_T0000008;gene_id=HG003_chrY_G0000004;Parent=HG003_chrY_T0000008;transcript_name=hg002_chrY_paternal_4.1;gene_name=LINC00685;ID=exon:HG003_chrY_T0000008:1;Name=LINC00685;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	115814	118001	1000	+	.	source_transcript=hg002_chrY_paternal_4.2;source_transcript_name=hg002_chrY_paternal_4.1;source_gene=hg002_chrY_paternal_4;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_4;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_4.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_4.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00685;alternative_source_transcripts=hg002_chrY_paternal_4.2,hg002_chrY_paternal_4.2;transcript_id=HG003_chrY_T0000009;gene_id=HG003_chrY_G0000004;Parent=HG003_chrY_G0000004;transcript_name=hg002_chrY_paternal_4.1;gene_name=LINC00685;ID=HG003_chrY_T0000009;Name=LINC00685
HG003_chrY	CAT	exon	115814	118001	.	+	.	source_transcript=hg002_chrY_paternal_4.2;source_transcript_name=hg002_chrY_paternal_4.1;source_gene=hg002_chrY_paternal_4;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_4;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_4.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_4.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00685;alternative_source_transcripts=hg002_chrY_paternal_4.2,hg002_chrY_paternal_4.2;transcript_id=HG003_chrY_T0000009;gene_id=HG003_chrY_G0000004;Parent=HG003_chrY_T0000009;transcript_name=hg002_chrY_paternal_4.1;gene_name=LINC00685;ID=exon:HG003_chrY_T0000009:0;Name=LINC00685;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	130621	174526	.	-	.	source_gene_common_name=PPP2R3B;source_gene=hg002_chrY_paternal_5;gene_id=HG003_chrY_G0000005;gene_biotype=protein_coding;gene_name=PPP2R3B;gene_sources=liftoff,augTM,transMap;ID=HG003_chrY_G0000005;Name=PPP2R3B
HG003_chrY	CAT	transcript	130621	174526	9930	-	.	source_transcript=hg002_chrY_paternal_5.1;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.1;transcript_score=299.635;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_G0000005;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=HG003_chrY_T0000010;Name=PPP2R3B
HG003_chrY	CAT	exon	130621	131205	.	-	.	source_transcript=hg002_chrY_paternal_5.1;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.1;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000010;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000010:0;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	131055	131205	.	-	1	source_transcript=hg002_chrY_paternal_5.1;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.1;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000010;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:HG003_chrY_T0000010:0;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	131055	131057	.	-	0	source_transcript=hg002_chrY_paternal_5.1;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.1;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000010;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=stop_codon:HG003_chrY_T0000010;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	131206	135293	.	-	.	source_transcript=hg002_chrY_paternal_5.1;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.1;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000010;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000010:0;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	135294	135400	.	-	.	source_transcript=hg002_chrY_paternal_5.1;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.1;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000010;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000010:1;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	135294	135400	.	-	0	source_transcript=hg002_chrY_paternal_5.1;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.1;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000010;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:HG003_chrY_T0000010:1;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	135401	135467	.	-	.	source_transcript=hg002_chrY_paternal_5.1;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.1;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000010;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000010:1;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	135468	135586	.	-	.	source_transcript=hg002_chrY_paternal_5.1;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.1;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000010;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000010:2;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	135468	135586	.	-	2	source_transcript=hg002_chrY_paternal_5.1;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.1;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000010;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:HG003_chrY_T0000010:2;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	135587	137574	.	-	.	source_transcript=hg002_chrY_paternal_5.1;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.1;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000010;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000010:2;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	137575	137750	.	-	.	source_transcript=hg002_chrY_paternal_5.1;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.1;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000010;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000010:3;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	137575	137750	.	-	1	source_transcript=hg002_chrY_paternal_5.1;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.1;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000010;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:HG003_chrY_T0000010:3;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	137751	138077	.	-	.	source_transcript=hg002_chrY_paternal_5.1;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.1;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000010;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000010:3;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	138078	138167	.	-	.	source_transcript=hg002_chrY_paternal_5.1;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.1;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000010;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000010:4;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	138078	138167	.	-	1	source_transcript=hg002_chrY_paternal_5.1;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.1;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000010;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:HG003_chrY_T0000010:4;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	138168	138663	.	-	.	source_transcript=hg002_chrY_paternal_5.1;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.1;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000010;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000010:4;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	138664	138712	.	-	.	source_transcript=hg002_chrY_paternal_5.1;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.1;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000010;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000010:5;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	138664	138712	.	-	2	source_transcript=hg002_chrY_paternal_5.1;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.1;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000010;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:HG003_chrY_T0000010:5;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	138713	141890	.	-	.	source_transcript=hg002_chrY_paternal_5.1;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.1;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000010;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000010:5;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	141891	142047	.	-	.	source_transcript=hg002_chrY_paternal_5.1;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.1;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000010;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000010:6;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	141891	142047	.	-	0	source_transcript=hg002_chrY_paternal_5.1;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.1;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000010;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:HG003_chrY_T0000010:6;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	142048	142555	.	-	.	source_transcript=hg002_chrY_paternal_5.1;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.1;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000010;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000010:6;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	142556	142642	.	-	.	source_transcript=hg002_chrY_paternal_5.1;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.1;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000010;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000010:7;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	142556	142642	.	-	0	source_transcript=hg002_chrY_paternal_5.1;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.1;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000010;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:HG003_chrY_T0000010:7;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	142643	143082	.	-	.	source_transcript=hg002_chrY_paternal_5.1;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.1;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000010;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000010:7;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	143083	143157	.	-	.	source_transcript=hg002_chrY_paternal_5.1;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.1;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000010;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000010:8;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	143083	143157	.	-	0	source_transcript=hg002_chrY_paternal_5.1;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.1;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000010;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:HG003_chrY_T0000010:8;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	143158	143583	.	-	.	source_transcript=hg002_chrY_paternal_5.1;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.1;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000010;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000010:8;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	143584	143686	.	-	.	source_transcript=hg002_chrY_paternal_5.1;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.1;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000010;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000010:9;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	143584	143686	.	-	1	source_transcript=hg002_chrY_paternal_5.1;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.1;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000010;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:HG003_chrY_T0000010:9;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	143687	143939	.	-	.	source_transcript=hg002_chrY_paternal_5.1;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.1;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000010;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000010:9;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	143940	144043	.	-	.	source_transcript=hg002_chrY_paternal_5.1;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.1;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000010;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000010:10;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	143940	144043	.	-	0	source_transcript=hg002_chrY_paternal_5.1;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.1;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000010;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:HG003_chrY_T0000010:10;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	144044	157739	.	-	.	source_transcript=hg002_chrY_paternal_5.1;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.1;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000010;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000010:10;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	157740	157925	.	-	.	source_transcript=hg002_chrY_paternal_5.1;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.1;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000010;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000010:11;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	157740	157925	.	-	0	source_transcript=hg002_chrY_paternal_5.1;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.1;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000010;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:HG003_chrY_T0000010:11;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	157926	171820	.	-	.	source_transcript=hg002_chrY_paternal_5.1;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.1;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000010;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000010:11;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	171821	174526	.	-	.	source_transcript=hg002_chrY_paternal_5.1;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.1;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000010;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000010:12;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	171821	172060	.	-	0	source_transcript=hg002_chrY_paternal_5.1;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.1;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000010;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:HG003_chrY_T0000010:12;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	172058	172060	.	-	0	source_transcript=hg002_chrY_paternal_5.1;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.1;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000010;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=start_codon:HG003_chrY_T0000010;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	130926	174526	9940	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.635;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_G0000005;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=HG003_chrY_T0000011;Name=PPP2R3B
HG003_chrY	CAT	exon	130926	131751	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000011;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000011:0;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	131055	131751	.	-	1	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000011;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:HG003_chrY_T0000011:0;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	131055	131057	.	-	0	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000011;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=stop_codon:HG003_chrY_T0000011;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	131752	135293	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000011;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000011:0;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	135294	135400	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000011;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000011:1;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	135294	135400	.	-	0	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000011;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:HG003_chrY_T0000011:1;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	135401	135467	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000011;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000011:1;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	135468	135586	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000011;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000011:2;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	135468	135586	.	-	2	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000011;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:HG003_chrY_T0000011:2;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	135587	137574	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000011;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000011:2;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	137575	137750	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000011;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000011:3;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	137575	137750	.	-	1	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000011;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:HG003_chrY_T0000011:3;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	137751	138077	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000011;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000011:3;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	138078	138167	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000011;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000011:4;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	138078	138167	.	-	1	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000011;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:HG003_chrY_T0000011:4;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	138168	138663	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000011;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000011:4;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	138664	138712	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000011;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000011:5;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	138664	138712	.	-	2	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000011;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:HG003_chrY_T0000011:5;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	138713	141890	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000011;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000011:5;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	141891	142047	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000011;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000011:6;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	141891	142047	.	-	0	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000011;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:HG003_chrY_T0000011:6;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	142048	142555	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000011;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000011:6;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	142556	142642	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000011;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000011:7;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	142556	142642	.	-	0	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000011;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:HG003_chrY_T0000011:7;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	142643	143082	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000011;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000011:7;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	143083	143157	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000011;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000011:8;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	143083	143157	.	-	0	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000011;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:HG003_chrY_T0000011:8;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	143158	143583	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000011;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000011:8;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	143584	143686	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000011;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000011:9;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	143584	143686	.	-	1	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000011;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:HG003_chrY_T0000011:9;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	143687	143939	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000011;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000011:9;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	143940	144043	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000011;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000011:10;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	143940	144043	.	-	0	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000011;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:HG003_chrY_T0000011:10;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	144044	157739	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000011;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000011:10;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	157740	157925	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000011;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000011:11;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	157740	157925	.	-	0	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000011;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:HG003_chrY_T0000011:11;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	157926	171820	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000011;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000011:11;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	171821	174526	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000011;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000011:12;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	171821	172060	.	-	0	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000011;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:HG003_chrY_T0000011:12;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	172058	172060	.	-	0	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000011;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=start_codon:HG003_chrY_T0000011;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	228409	271919	.	+	.	source_gene_common_name=LOC102724521;source_gene=hg002_chrY_paternal_6;gene_id=HG003_chrY_G0000006;gene_biotype=lncRNA;gene_name=LOC102724521;gene_sources=liftoff,transMap_pairwise;ID=HG003_chrY_G0000006;Name=LOC102724521
HG003_chrY	CAT	transcript	228409	271919	1000	+	.	source_transcript=hg002_chrY_paternal_6.1;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_6.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000012;gene_id=HG003_chrY_G0000006;Parent=HG003_chrY_G0000006;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=HG003_chrY_T0000012;Name=LOC102724521
HG003_chrY	CAT	exon	228409	228877	.	+	.	source_transcript=hg002_chrY_paternal_6.1;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_6.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000012;gene_id=HG003_chrY_G0000006;Parent=HG003_chrY_T0000012;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=exon:HG003_chrY_T0000012:0;Name=LOC102724521;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	228878	232224	.	+	.	source_transcript=hg002_chrY_paternal_6.1;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_6.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000012;gene_id=HG003_chrY_G0000006;Parent=HG003_chrY_T0000012;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=intron:HG003_chrY_T0000012:0;Name=LOC102724521;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	232225	232482	.	+	.	source_transcript=hg002_chrY_paternal_6.1;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_6.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000012;gene_id=HG003_chrY_G0000006;Parent=HG003_chrY_T0000012;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=exon:HG003_chrY_T0000012:1;Name=LOC102724521;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	232483	233966	.	+	.	source_transcript=hg002_chrY_paternal_6.1;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_6.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000012;gene_id=HG003_chrY_G0000006;Parent=HG003_chrY_T0000012;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=intron:HG003_chrY_T0000012:1;Name=LOC102724521;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	233967	234081	.	+	.	source_transcript=hg002_chrY_paternal_6.1;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_6.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000012;gene_id=HG003_chrY_G0000006;Parent=HG003_chrY_T0000012;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=exon:HG003_chrY_T0000012:2;Name=LOC102724521;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	234082	235610	.	+	.	source_transcript=hg002_chrY_paternal_6.1;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_6.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000012;gene_id=HG003_chrY_G0000006;Parent=HG003_chrY_T0000012;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=intron:HG003_chrY_T0000012:2;Name=LOC102724521;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	235611	235777	.	+	.	source_transcript=hg002_chrY_paternal_6.1;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_6.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000012;gene_id=HG003_chrY_G0000006;Parent=HG003_chrY_T0000012;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=exon:HG003_chrY_T0000012:3;Name=LOC102724521;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	235778	239322	.	+	.	source_transcript=hg002_chrY_paternal_6.1;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_6.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000012;gene_id=HG003_chrY_G0000006;Parent=HG003_chrY_T0000012;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=intron:HG003_chrY_T0000012:3;Name=LOC102724521;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	239323	239395	.	+	.	source_transcript=hg002_chrY_paternal_6.1;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_6.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000012;gene_id=HG003_chrY_G0000006;Parent=HG003_chrY_T0000012;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=exon:HG003_chrY_T0000012:4;Name=LOC102724521;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	239396	239628	.	+	.	source_transcript=hg002_chrY_paternal_6.1;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_6.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000012;gene_id=HG003_chrY_G0000006;Parent=HG003_chrY_T0000012;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=intron:HG003_chrY_T0000012:4;Name=LOC102724521;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	239629	239933	.	+	.	source_transcript=hg002_chrY_paternal_6.1;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_6.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000012;gene_id=HG003_chrY_G0000006;Parent=HG003_chrY_T0000012;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=exon:HG003_chrY_T0000012:5;Name=LOC102724521;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	239934	258608	.	+	.	source_transcript=hg002_chrY_paternal_6.1;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_6.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000012;gene_id=HG003_chrY_G0000006;Parent=HG003_chrY_T0000012;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=intron:HG003_chrY_T0000012:5;Name=LOC102724521;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	258609	259221	.	+	.	source_transcript=hg002_chrY_paternal_6.1;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_6.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000012;gene_id=HG003_chrY_G0000006;Parent=HG003_chrY_T0000012;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=exon:HG003_chrY_T0000012:6;Name=LOC102724521;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	259222	268681	.	+	.	source_transcript=hg002_chrY_paternal_6.1;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_6.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000012;gene_id=HG003_chrY_G0000006;Parent=HG003_chrY_T0000012;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=intron:HG003_chrY_T0000012:6;Name=LOC102724521;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	268682	268802	.	+	.	source_transcript=hg002_chrY_paternal_6.1;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_6.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000012;gene_id=HG003_chrY_G0000006;Parent=HG003_chrY_T0000012;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=exon:HG003_chrY_T0000012:7;Name=LOC102724521;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	268803	269878	.	+	.	source_transcript=hg002_chrY_paternal_6.1;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_6.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000012;gene_id=HG003_chrY_G0000006;Parent=HG003_chrY_T0000012;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=intron:HG003_chrY_T0000012:7;Name=LOC102724521;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	269879	270077	.	+	.	source_transcript=hg002_chrY_paternal_6.1;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_6.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000012;gene_id=HG003_chrY_G0000006;Parent=HG003_chrY_T0000012;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=exon:HG003_chrY_T0000012:8;Name=LOC102724521;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	270078	270683	.	+	.	source_transcript=hg002_chrY_paternal_6.1;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_6.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000012;gene_id=HG003_chrY_G0000006;Parent=HG003_chrY_T0000012;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=intron:HG003_chrY_T0000012:8;Name=LOC102724521;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	270684	271919	.	+	.	source_transcript=hg002_chrY_paternal_6.1;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_6.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000012;gene_id=HG003_chrY_G0000006;Parent=HG003_chrY_T0000012;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=exon:HG003_chrY_T0000012:9;Name=LOC102724521;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	434572	468841	.	+	.	source_gene_common_name=SHOX;source_gene=hg002_chrY_paternal_9;alternative_source_transcripts=hg002_chrY_paternal_9.1,hg002_chrY_paternal_9.1;gene_id=HG003_chrY_G0000007;gene_biotype=protein_coding;gene_name=SHOX;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000007;Name=SHOX
HG003_chrY	CAT	transcript	434572	468841	100	+	.	source_transcript=hg002_chrY_paternal_9.1;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.1,hg002_chrY_paternal_9.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000013;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_G0000007;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=HG003_chrY_T0000013;Name=SHOX
HG003_chrY	CAT	exon	434572	434833	.	+	.	source_transcript=hg002_chrY_paternal_9.1;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.1,hg002_chrY_paternal_9.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000013;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000013;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=exon:HG003_chrY_T0000013:0;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	434834	440721	.	+	.	source_transcript=hg002_chrY_paternal_9.1;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.1,hg002_chrY_paternal_9.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000013;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000013;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=intron:HG003_chrY_T0000013:0;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	440722	441430	.	+	.	source_transcript=hg002_chrY_paternal_9.1;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.1,hg002_chrY_paternal_9.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000013;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000013;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=exon:HG003_chrY_T0000013:1;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	441154	441430	.	+	0	source_transcript=hg002_chrY_paternal_9.1;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.1,hg002_chrY_paternal_9.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000013;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000013;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=CDS:HG003_chrY_T0000013:0;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	441154	441156	.	+	0	source_transcript=hg002_chrY_paternal_9.1;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.1,hg002_chrY_paternal_9.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000013;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000013;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=start_codon:HG003_chrY_T0000013;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	441431	444874	.	+	.	source_transcript=hg002_chrY_paternal_9.1;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.1,hg002_chrY_paternal_9.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000013;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000013;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=intron:HG003_chrY_T0000013:1;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	444875	445083	.	+	.	source_transcript=hg002_chrY_paternal_9.1;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.1,hg002_chrY_paternal_9.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000013;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000013;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=exon:HG003_chrY_T0000013:2;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	444875	445083	.	+	2	source_transcript=hg002_chrY_paternal_9.1;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.1,hg002_chrY_paternal_9.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000013;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000013;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=CDS:HG003_chrY_T0000013:1;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	445084	450906	.	+	.	source_transcript=hg002_chrY_paternal_9.1;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.1,hg002_chrY_paternal_9.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000013;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000013;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=intron:HG003_chrY_T0000013:2;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	450907	450964	.	+	.	source_transcript=hg002_chrY_paternal_9.1;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.1,hg002_chrY_paternal_9.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000013;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000013;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=exon:HG003_chrY_T0000013:3;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	450907	450964	.	+	0	source_transcript=hg002_chrY_paternal_9.1;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.1,hg002_chrY_paternal_9.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000013;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000013;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=CDS:HG003_chrY_T0000013:2;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	450965	451084	.	+	.	source_transcript=hg002_chrY_paternal_9.1;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.1,hg002_chrY_paternal_9.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000013;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000013;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=intron:HG003_chrY_T0000013:3;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	451085	451173	.	+	.	source_transcript=hg002_chrY_paternal_9.1;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.1,hg002_chrY_paternal_9.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000013;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000013;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=exon:HG003_chrY_T0000013:4;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	451085	451173	.	+	2	source_transcript=hg002_chrY_paternal_9.1;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.1,hg002_chrY_paternal_9.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000013;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000013;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=CDS:HG003_chrY_T0000013:3;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	451174	468214	.	+	.	source_transcript=hg002_chrY_paternal_9.1;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.1,hg002_chrY_paternal_9.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000013;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000013;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=intron:HG003_chrY_T0000013:4;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	468215	468841	.	+	.	source_transcript=hg002_chrY_paternal_9.1;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.1,hg002_chrY_paternal_9.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000013;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000013;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=exon:HG003_chrY_T0000013:5;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	468215	468259	.	+	0	source_transcript=hg002_chrY_paternal_9.1;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.1,hg002_chrY_paternal_9.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000013;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000013;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=CDS:HG003_chrY_T0000013:4;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	468257	468259	.	+	0	source_transcript=hg002_chrY_paternal_9.1;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.1,hg002_chrY_paternal_9.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000013;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000013;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=stop_codon:HG003_chrY_T0000013;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	441047	461019	100	+	.	source_transcript=hg002_chrY_paternal_9.2;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.2,hg002_chrY_paternal_9.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_G0000007;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=HG003_chrY_T0000014;Name=SHOX
HG003_chrY	CAT	exon	441047	441430	.	+	.	source_transcript=hg002_chrY_paternal_9.2;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.2,hg002_chrY_paternal_9.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000014;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=exon:HG003_chrY_T0000014:0;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	441154	441430	.	+	0	source_transcript=hg002_chrY_paternal_9.2;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.2,hg002_chrY_paternal_9.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000014;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=CDS:HG003_chrY_T0000014:0;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	441154	441156	.	+	0	source_transcript=hg002_chrY_paternal_9.2;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.2,hg002_chrY_paternal_9.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000014;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=start_codon:HG003_chrY_T0000014;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	441431	444874	.	+	.	source_transcript=hg002_chrY_paternal_9.2;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.2,hg002_chrY_paternal_9.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000014;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=intron:HG003_chrY_T0000014:0;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	444875	445083	.	+	.	source_transcript=hg002_chrY_paternal_9.2;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.2,hg002_chrY_paternal_9.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000014;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=exon:HG003_chrY_T0000014:1;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	444875	445083	.	+	2	source_transcript=hg002_chrY_paternal_9.2;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.2,hg002_chrY_paternal_9.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000014;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=CDS:HG003_chrY_T0000014:1;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	445084	450906	.	+	.	source_transcript=hg002_chrY_paternal_9.2;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.2,hg002_chrY_paternal_9.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000014;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=intron:HG003_chrY_T0000014:1;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	450907	450964	.	+	.	source_transcript=hg002_chrY_paternal_9.2;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.2,hg002_chrY_paternal_9.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000014;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=exon:HG003_chrY_T0000014:2;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	450907	450964	.	+	0	source_transcript=hg002_chrY_paternal_9.2;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.2,hg002_chrY_paternal_9.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000014;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=CDS:HG003_chrY_T0000014:2;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	450965	451084	.	+	.	source_transcript=hg002_chrY_paternal_9.2;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.2,hg002_chrY_paternal_9.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000014;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=intron:HG003_chrY_T0000014:2;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	451085	451173	.	+	.	source_transcript=hg002_chrY_paternal_9.2;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.2,hg002_chrY_paternal_9.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000014;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=exon:HG003_chrY_T0000014:3;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	451085	451173	.	+	2	source_transcript=hg002_chrY_paternal_9.2;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.2,hg002_chrY_paternal_9.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000014;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=CDS:HG003_chrY_T0000014:3;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	451174	454475	.	+	.	source_transcript=hg002_chrY_paternal_9.2;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.2,hg002_chrY_paternal_9.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000014;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=intron:HG003_chrY_T0000014:3;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	454476	461019	.	+	.	source_transcript=hg002_chrY_paternal_9.2;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.2,hg002_chrY_paternal_9.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000014;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=exon:HG003_chrY_T0000014:4;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	454476	454721	.	+	0	source_transcript=hg002_chrY_paternal_9.2;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.2,hg002_chrY_paternal_9.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000014;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=CDS:HG003_chrY_T0000014:4;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	454719	454721	.	+	0	source_transcript=hg002_chrY_paternal_9.2;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.2,hg002_chrY_paternal_9.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000014;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=stop_codon:HG003_chrY_T0000014;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	1004982	1027229	.	-	.	source_gene_common_name=CRLF2;source_gene=hg002_chrY_paternal_13;alternative_source_transcripts=hg002_chrY_paternal_13.1,hg002_chrY_paternal_13.1;gene_id=HG003_chrY_G0000008;gene_biotype=protein_coding;gene_name=CRLF2;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000008;Name=CRLF2
HG003_chrY	CAT	transcript	1004982	1027229	100	-	.	source_transcript=hg002_chrY_paternal_13.1;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.1,hg002_chrY_paternal_13.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000015;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_G0000008;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=HG003_chrY_T0000015;Name=CRLF2
HG003_chrY	CAT	exon	1004982	1005652	.	-	.	source_transcript=hg002_chrY_paternal_13.1;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.1,hg002_chrY_paternal_13.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000015;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000015;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=exon:HG003_chrY_T0000015:0;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1005389	1005652	.	-	0	source_transcript=hg002_chrY_paternal_13.1;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.1,hg002_chrY_paternal_13.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000015;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000015;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=CDS:HG003_chrY_T0000015:0;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1005389	1005391	.	-	0	source_transcript=hg002_chrY_paternal_13.1;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.1,hg002_chrY_paternal_13.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000015;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000015;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=stop_codon:HG003_chrY_T0000015;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1005653	1007721	.	-	.	source_transcript=hg002_chrY_paternal_13.1;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.1,hg002_chrY_paternal_13.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000015;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000015;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=intron:HG003_chrY_T0000015:0;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1007722	1007806	.	-	.	source_transcript=hg002_chrY_paternal_13.1;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.1,hg002_chrY_paternal_13.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000015;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000015;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=exon:HG003_chrY_T0000015:1;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1007722	1007806	.	-	1	source_transcript=hg002_chrY_paternal_13.1;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.1,hg002_chrY_paternal_13.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000015;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000015;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=CDS:HG003_chrY_T0000015:1;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1007807	1011285	.	-	.	source_transcript=hg002_chrY_paternal_13.1;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.1,hg002_chrY_paternal_13.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000015;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000015;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=intron:HG003_chrY_T0000015:1;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1011286	1011406	.	-	.	source_transcript=hg002_chrY_paternal_13.1;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.1,hg002_chrY_paternal_13.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000015;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000015;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=exon:HG003_chrY_T0000015:2;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1011286	1011406	.	-	2	source_transcript=hg002_chrY_paternal_13.1;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.1,hg002_chrY_paternal_13.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000015;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000015;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=CDS:HG003_chrY_T0000015:2;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1011407	1013102	.	-	.	source_transcript=hg002_chrY_paternal_13.1;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.1,hg002_chrY_paternal_13.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000015;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000015;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=intron:HG003_chrY_T0000015:2;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1013103	1013265	.	-	.	source_transcript=hg002_chrY_paternal_13.1;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.1,hg002_chrY_paternal_13.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000015;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000015;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=exon:HG003_chrY_T0000015:3;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1013103	1013265	.	-	0	source_transcript=hg002_chrY_paternal_13.1;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.1,hg002_chrY_paternal_13.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000015;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000015;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=CDS:HG003_chrY_T0000015:3;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1013266	1016951	.	-	.	source_transcript=hg002_chrY_paternal_13.1;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.1,hg002_chrY_paternal_13.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000015;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000015;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=intron:HG003_chrY_T0000015:3;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1016952	1017085	.	-	.	source_transcript=hg002_chrY_paternal_13.1;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.1,hg002_chrY_paternal_13.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000015;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000015;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=exon:HG003_chrY_T0000015:4;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1016952	1017085	.	-	2	source_transcript=hg002_chrY_paternal_13.1;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.1,hg002_chrY_paternal_13.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000015;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000015;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=CDS:HG003_chrY_T0000015:4;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1017086	1021007	.	-	.	source_transcript=hg002_chrY_paternal_13.1;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.1,hg002_chrY_paternal_13.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000015;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000015;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=intron:HG003_chrY_T0000015:4;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1021008	1021174	.	-	.	source_transcript=hg002_chrY_paternal_13.1;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.1,hg002_chrY_paternal_13.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000015;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000015;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=exon:HG003_chrY_T0000015:5;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1021008	1021020	.	-	0	source_transcript=hg002_chrY_paternal_13.1;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.1,hg002_chrY_paternal_13.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000015;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000015;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=CDS:HG003_chrY_T0000015:5;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1021018	1021020	.	-	0	source_transcript=hg002_chrY_paternal_13.1;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.1,hg002_chrY_paternal_13.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000015;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000015;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=start_codon:HG003_chrY_T0000015;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1021175	1027135	.	-	.	source_transcript=hg002_chrY_paternal_13.1;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.1,hg002_chrY_paternal_13.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000015;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000015;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=intron:HG003_chrY_T0000015:5;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1027136	1027229	.	-	.	source_transcript=hg002_chrY_paternal_13.1;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.1,hg002_chrY_paternal_13.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000015;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000015;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=exon:HG003_chrY_T0000015:6;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1004982	1027229	100	-	.	source_transcript=hg002_chrY_paternal_13.2;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.2,hg002_chrY_paternal_13.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000016;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_G0000008;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=HG003_chrY_T0000016;Name=CRLF2
HG003_chrY	CAT	exon	1004982	1005652	.	-	.	source_transcript=hg002_chrY_paternal_13.2;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.2,hg002_chrY_paternal_13.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000016;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000016;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=exon:HG003_chrY_T0000016:0;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1005389	1005652	.	-	0	source_transcript=hg002_chrY_paternal_13.2;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.2,hg002_chrY_paternal_13.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000016;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000016;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=CDS:HG003_chrY_T0000016:0;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1005389	1005391	.	-	0	source_transcript=hg002_chrY_paternal_13.2;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.2,hg002_chrY_paternal_13.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000016;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000016;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=stop_codon:HG003_chrY_T0000016;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1005653	1007721	.	-	.	source_transcript=hg002_chrY_paternal_13.2;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.2,hg002_chrY_paternal_13.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000016;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000016;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=intron:HG003_chrY_T0000016:0;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1007722	1007806	.	-	.	source_transcript=hg002_chrY_paternal_13.2;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.2,hg002_chrY_paternal_13.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000016;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000016;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=exon:HG003_chrY_T0000016:1;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1007722	1007806	.	-	1	source_transcript=hg002_chrY_paternal_13.2;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.2,hg002_chrY_paternal_13.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000016;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000016;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=CDS:HG003_chrY_T0000016:1;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1007807	1011285	.	-	.	source_transcript=hg002_chrY_paternal_13.2;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.2,hg002_chrY_paternal_13.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000016;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000016;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=intron:HG003_chrY_T0000016:1;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1011286	1011406	.	-	.	source_transcript=hg002_chrY_paternal_13.2;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.2,hg002_chrY_paternal_13.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000016;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000016;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=exon:HG003_chrY_T0000016:2;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1011286	1011406	.	-	2	source_transcript=hg002_chrY_paternal_13.2;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.2,hg002_chrY_paternal_13.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000016;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000016;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=CDS:HG003_chrY_T0000016:2;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1011407	1013102	.	-	.	source_transcript=hg002_chrY_paternal_13.2;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.2,hg002_chrY_paternal_13.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000016;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000016;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=intron:HG003_chrY_T0000016:2;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1013103	1013265	.	-	.	source_transcript=hg002_chrY_paternal_13.2;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.2,hg002_chrY_paternal_13.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000016;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000016;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=exon:HG003_chrY_T0000016:3;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1013103	1013265	.	-	0	source_transcript=hg002_chrY_paternal_13.2;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.2,hg002_chrY_paternal_13.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000016;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000016;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=CDS:HG003_chrY_T0000016:3;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1013266	1016951	.	-	.	source_transcript=hg002_chrY_paternal_13.2;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.2,hg002_chrY_paternal_13.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000016;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000016;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=intron:HG003_chrY_T0000016:3;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1016952	1017085	.	-	.	source_transcript=hg002_chrY_paternal_13.2;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.2,hg002_chrY_paternal_13.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000016;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000016;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=exon:HG003_chrY_T0000016:4;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1016952	1017085	.	-	2	source_transcript=hg002_chrY_paternal_13.2;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.2,hg002_chrY_paternal_13.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000016;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000016;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=CDS:HG003_chrY_T0000016:4;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1017086	1021007	.	-	.	source_transcript=hg002_chrY_paternal_13.2;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.2,hg002_chrY_paternal_13.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000016;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000016;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=intron:HG003_chrY_T0000016:4;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1021008	1021174	.	-	.	source_transcript=hg002_chrY_paternal_13.2;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.2,hg002_chrY_paternal_13.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000016;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000016;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=exon:HG003_chrY_T0000016:5;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1021008	1021174	.	-	1	source_transcript=hg002_chrY_paternal_13.2;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.2,hg002_chrY_paternal_13.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000016;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000016;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=CDS:HG003_chrY_T0000016:5;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1021175	1023377	.	-	.	source_transcript=hg002_chrY_paternal_13.2;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.2,hg002_chrY_paternal_13.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000016;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000016;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=intron:HG003_chrY_T0000016:5;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1023378	1023480	.	-	.	source_transcript=hg002_chrY_paternal_13.2;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.2,hg002_chrY_paternal_13.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000016;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000016;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=exon:HG003_chrY_T0000016:6;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1023378	1023480	.	-	2	source_transcript=hg002_chrY_paternal_13.2;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.2,hg002_chrY_paternal_13.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000016;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000016;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=CDS:HG003_chrY_T0000016:6;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1023481	1027135	.	-	.	source_transcript=hg002_chrY_paternal_13.2;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.2,hg002_chrY_paternal_13.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000016;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000016;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=intron:HG003_chrY_T0000016:6;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1027136	1027229	.	-	.	source_transcript=hg002_chrY_paternal_13.2;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.2,hg002_chrY_paternal_13.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000016;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000016;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=exon:HG003_chrY_T0000016:7;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1027136	1027214	.	-	0	source_transcript=hg002_chrY_paternal_13.2;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.2,hg002_chrY_paternal_13.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000016;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000016;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=CDS:HG003_chrY_T0000016:7;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1027212	1027214	.	-	0	source_transcript=hg002_chrY_paternal_13.2;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.2,hg002_chrY_paternal_13.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000016;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000016;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=start_codon:HG003_chrY_T0000016;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1004982	1027229	100	-	.	source_transcript=hg002_chrY_paternal_13.4;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.4,hg002_chrY_paternal_13.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000017;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_G0000008;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=HG003_chrY_T0000017;Name=CRLF2
HG003_chrY	CAT	exon	1004982	1005652	.	-	.	source_transcript=hg002_chrY_paternal_13.4;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.4,hg002_chrY_paternal_13.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000017;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000017;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=exon:HG003_chrY_T0000017:0;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1005389	1005652	.	-	0	source_transcript=hg002_chrY_paternal_13.4;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.4,hg002_chrY_paternal_13.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000017;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000017;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=CDS:HG003_chrY_T0000017:0;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1005389	1005391	.	-	0	source_transcript=hg002_chrY_paternal_13.4;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.4,hg002_chrY_paternal_13.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000017;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000017;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=stop_codon:HG003_chrY_T0000017;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1005653	1007721	.	-	.	source_transcript=hg002_chrY_paternal_13.4;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.4,hg002_chrY_paternal_13.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000017;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000017;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=intron:HG003_chrY_T0000017:0;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1007722	1007806	.	-	.	source_transcript=hg002_chrY_paternal_13.4;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.4,hg002_chrY_paternal_13.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000017;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000017;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=exon:HG003_chrY_T0000017:1;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1007722	1007806	.	-	1	source_transcript=hg002_chrY_paternal_13.4;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.4,hg002_chrY_paternal_13.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000017;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000017;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=CDS:HG003_chrY_T0000017:1;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1007807	1011285	.	-	.	source_transcript=hg002_chrY_paternal_13.4;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.4,hg002_chrY_paternal_13.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000017;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000017;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=intron:HG003_chrY_T0000017:1;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1011286	1011406	.	-	.	source_transcript=hg002_chrY_paternal_13.4;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.4,hg002_chrY_paternal_13.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000017;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000017;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=exon:HG003_chrY_T0000017:2;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1011286	1011406	.	-	2	source_transcript=hg002_chrY_paternal_13.4;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.4,hg002_chrY_paternal_13.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000017;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000017;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=CDS:HG003_chrY_T0000017:2;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1011407	1013102	.	-	.	source_transcript=hg002_chrY_paternal_13.4;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.4,hg002_chrY_paternal_13.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000017;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000017;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=intron:HG003_chrY_T0000017:2;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1013103	1013265	.	-	.	source_transcript=hg002_chrY_paternal_13.4;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.4,hg002_chrY_paternal_13.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000017;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000017;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=exon:HG003_chrY_T0000017:3;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1013103	1013265	.	-	0	source_transcript=hg002_chrY_paternal_13.4;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.4,hg002_chrY_paternal_13.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000017;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000017;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=CDS:HG003_chrY_T0000017:3;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1013266	1016951	.	-	.	source_transcript=hg002_chrY_paternal_13.4;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.4,hg002_chrY_paternal_13.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000017;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000017;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=intron:HG003_chrY_T0000017:3;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1016952	1017085	.	-	.	source_transcript=hg002_chrY_paternal_13.4;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.4,hg002_chrY_paternal_13.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000017;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000017;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=exon:HG003_chrY_T0000017:4;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1016952	1017085	.	-	2	source_transcript=hg002_chrY_paternal_13.4;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.4,hg002_chrY_paternal_13.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000017;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000017;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=CDS:HG003_chrY_T0000017:4;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1017086	1021007	.	-	.	source_transcript=hg002_chrY_paternal_13.4;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.4,hg002_chrY_paternal_13.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000017;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000017;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=intron:HG003_chrY_T0000017:4;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1021008	1021174	.	-	.	source_transcript=hg002_chrY_paternal_13.4;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.4,hg002_chrY_paternal_13.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000017;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000017;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=exon:HG003_chrY_T0000017:5;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1021008	1021174	.	-	1	source_transcript=hg002_chrY_paternal_13.4;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.4,hg002_chrY_paternal_13.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000017;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000017;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=CDS:HG003_chrY_T0000017:5;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1021175	1023377	.	-	.	source_transcript=hg002_chrY_paternal_13.4;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.4,hg002_chrY_paternal_13.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000017;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000017;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=intron:HG003_chrY_T0000017:5;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1023378	1023477	.	-	.	source_transcript=hg002_chrY_paternal_13.4;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.4,hg002_chrY_paternal_13.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000017;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000017;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=exon:HG003_chrY_T0000017:6;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1023378	1023477	.	-	2	source_transcript=hg002_chrY_paternal_13.4;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.4,hg002_chrY_paternal_13.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000017;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000017;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=CDS:HG003_chrY_T0000017:6;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1023478	1027135	.	-	.	source_transcript=hg002_chrY_paternal_13.4;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.4,hg002_chrY_paternal_13.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000017;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000017;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=intron:HG003_chrY_T0000017:6;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1027136	1027229	.	-	.	source_transcript=hg002_chrY_paternal_13.4;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.4,hg002_chrY_paternal_13.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000017;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000017;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=exon:HG003_chrY_T0000017:7;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1027136	1027214	.	-	0	source_transcript=hg002_chrY_paternal_13.4;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.4,hg002_chrY_paternal_13.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000017;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000017;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=CDS:HG003_chrY_T0000017:7;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1027212	1027214	.	-	0	source_transcript=hg002_chrY_paternal_13.4;source_transcript_name=hg002_chrY_paternal_13.4;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_13.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.4,hg002_chrY_paternal_13.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000017;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000017;transcript_name=hg002_chrY_paternal_13.4;gene_name=CRLF2;ID=start_codon:HG003_chrY_T0000017;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1004982	1027229	1000	-	.	source_transcript=hg002_chrY_paternal_13.3;source_transcript_name=hg002_chrY_paternal_13.1;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_13.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.3,hg002_chrY_paternal_13.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_G0000008;transcript_name=hg002_chrY_paternal_13.1;gene_name=CRLF2;ID=HG003_chrY_T0000018;Name=CRLF2
HG003_chrY	CAT	exon	1004982	1005652	.	-	.	source_transcript=hg002_chrY_paternal_13.3;source_transcript_name=hg002_chrY_paternal_13.1;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_13.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.3,hg002_chrY_paternal_13.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000018;transcript_name=hg002_chrY_paternal_13.1;gene_name=CRLF2;ID=exon:HG003_chrY_T0000018:0;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1005653	1007721	.	-	.	source_transcript=hg002_chrY_paternal_13.3;source_transcript_name=hg002_chrY_paternal_13.1;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_13.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.3,hg002_chrY_paternal_13.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000018;transcript_name=hg002_chrY_paternal_13.1;gene_name=CRLF2;ID=intron:HG003_chrY_T0000018:0;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1007722	1007806	.	-	.	source_transcript=hg002_chrY_paternal_13.3;source_transcript_name=hg002_chrY_paternal_13.1;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_13.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.3,hg002_chrY_paternal_13.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000018;transcript_name=hg002_chrY_paternal_13.1;gene_name=CRLF2;ID=exon:HG003_chrY_T0000018:1;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1007807	1011285	.	-	.	source_transcript=hg002_chrY_paternal_13.3;source_transcript_name=hg002_chrY_paternal_13.1;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_13.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.3,hg002_chrY_paternal_13.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000018;transcript_name=hg002_chrY_paternal_13.1;gene_name=CRLF2;ID=intron:HG003_chrY_T0000018:1;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1011286	1011406	.	-	.	source_transcript=hg002_chrY_paternal_13.3;source_transcript_name=hg002_chrY_paternal_13.1;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_13.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.3,hg002_chrY_paternal_13.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000018;transcript_name=hg002_chrY_paternal_13.1;gene_name=CRLF2;ID=exon:HG003_chrY_T0000018:2;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1011407	1013343	.	-	.	source_transcript=hg002_chrY_paternal_13.3;source_transcript_name=hg002_chrY_paternal_13.1;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_13.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.3,hg002_chrY_paternal_13.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000018;transcript_name=hg002_chrY_paternal_13.1;gene_name=CRLF2;ID=intron:HG003_chrY_T0000018:2;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1013344	1013688	.	-	.	source_transcript=hg002_chrY_paternal_13.3;source_transcript_name=hg002_chrY_paternal_13.1;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_13.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.3,hg002_chrY_paternal_13.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000018;transcript_name=hg002_chrY_paternal_13.1;gene_name=CRLF2;ID=exon:HG003_chrY_T0000018:3;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1013689	1016951	.	-	.	source_transcript=hg002_chrY_paternal_13.3;source_transcript_name=hg002_chrY_paternal_13.1;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_13.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.3,hg002_chrY_paternal_13.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000018;transcript_name=hg002_chrY_paternal_13.1;gene_name=CRLF2;ID=intron:HG003_chrY_T0000018:3;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1016952	1017085	.	-	.	source_transcript=hg002_chrY_paternal_13.3;source_transcript_name=hg002_chrY_paternal_13.1;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_13.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.3,hg002_chrY_paternal_13.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000018;transcript_name=hg002_chrY_paternal_13.1;gene_name=CRLF2;ID=exon:HG003_chrY_T0000018:4;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1017086	1021007	.	-	.	source_transcript=hg002_chrY_paternal_13.3;source_transcript_name=hg002_chrY_paternal_13.1;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_13.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.3,hg002_chrY_paternal_13.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000018;transcript_name=hg002_chrY_paternal_13.1;gene_name=CRLF2;ID=intron:HG003_chrY_T0000018:4;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1021008	1021174	.	-	.	source_transcript=hg002_chrY_paternal_13.3;source_transcript_name=hg002_chrY_paternal_13.1;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_13.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.3,hg002_chrY_paternal_13.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000018;transcript_name=hg002_chrY_paternal_13.1;gene_name=CRLF2;ID=exon:HG003_chrY_T0000018:5;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1021175	1023377	.	-	.	source_transcript=hg002_chrY_paternal_13.3;source_transcript_name=hg002_chrY_paternal_13.1;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_13.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.3,hg002_chrY_paternal_13.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000018;transcript_name=hg002_chrY_paternal_13.1;gene_name=CRLF2;ID=intron:HG003_chrY_T0000018:5;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1023378	1023477	.	-	.	source_transcript=hg002_chrY_paternal_13.3;source_transcript_name=hg002_chrY_paternal_13.1;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_13.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.3,hg002_chrY_paternal_13.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000018;transcript_name=hg002_chrY_paternal_13.1;gene_name=CRLF2;ID=exon:HG003_chrY_T0000018:6;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1023478	1027135	.	-	.	source_transcript=hg002_chrY_paternal_13.3;source_transcript_name=hg002_chrY_paternal_13.1;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_13.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.3,hg002_chrY_paternal_13.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000018;transcript_name=hg002_chrY_paternal_13.1;gene_name=CRLF2;ID=intron:HG003_chrY_T0000018:6;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1027136	1027229	.	-	.	source_transcript=hg002_chrY_paternal_13.3;source_transcript_name=hg002_chrY_paternal_13.1;source_gene=hg002_chrY_paternal_13;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_13;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_13.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_13.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=hg002_chrY_paternal_13.3,hg002_chrY_paternal_13.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000018;transcript_name=hg002_chrY_paternal_13.1;gene_name=CRLF2;ID=exon:HG003_chrY_T0000018:7;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	1083966	1143787	.	+	.	source_gene_common_name=CSF2RA;source_gene=hg002_chrY_paternal_14;alternative_source_transcripts=hg002_chrY_paternal_14.1,hg002_chrY_paternal_14.1;gene_id=HG003_chrY_G0000009;gene_biotype=protein_coding;gene_name=CSF2RA;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000009;Name=CSF2RA
HG003_chrY	CAT	transcript	1083966	1124377	100	+	.	source_transcript=hg002_chrY_paternal_14.1;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.1,hg002_chrY_paternal_14.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000019;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_G0000009;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=HG003_chrY_T0000019;Name=CSF2RA
HG003_chrY	CAT	exon	1083966	1084031	.	+	.	source_transcript=hg002_chrY_paternal_14.1;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.1,hg002_chrY_paternal_14.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000019;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000019;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000019:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1091734	.	+	.	source_transcript=hg002_chrY_paternal_14.1;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.1,hg002_chrY_paternal_14.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000019;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000019;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000019:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1091735	1091822	.	+	.	source_transcript=hg002_chrY_paternal_14.1;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.1,hg002_chrY_paternal_14.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000019;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000019;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000019:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1091823	1099694	.	+	.	source_transcript=hg002_chrY_paternal_14.1;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.1,hg002_chrY_paternal_14.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000019;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000019;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000019:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=hg002_chrY_paternal_14.1;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.1,hg002_chrY_paternal_14.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000019;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000019;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000019:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=hg002_chrY_paternal_14.1;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.1,hg002_chrY_paternal_14.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000019;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000019;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000019:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=hg002_chrY_paternal_14.1;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.1,hg002_chrY_paternal_14.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000019;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000019;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000019;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=hg002_chrY_paternal_14.1;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.1,hg002_chrY_paternal_14.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000019;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000019;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000019:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=hg002_chrY_paternal_14.1;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.1,hg002_chrY_paternal_14.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000019;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000019;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000019:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=hg002_chrY_paternal_14.1;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.1,hg002_chrY_paternal_14.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000019;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000019;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000019:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=hg002_chrY_paternal_14.1;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.1,hg002_chrY_paternal_14.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000019;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000019;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000019:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=hg002_chrY_paternal_14.1;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.1,hg002_chrY_paternal_14.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000019;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000019;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000019:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=hg002_chrY_paternal_14.1;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.1,hg002_chrY_paternal_14.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000019;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000019;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000019:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=hg002_chrY_paternal_14.1;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.1,hg002_chrY_paternal_14.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000019;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000019;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000019:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=hg002_chrY_paternal_14.1;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.1,hg002_chrY_paternal_14.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000019;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000019;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000019:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=hg002_chrY_paternal_14.1;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.1,hg002_chrY_paternal_14.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000019;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000019;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000019:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=hg002_chrY_paternal_14.1;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.1,hg002_chrY_paternal_14.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000019;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000019;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000019:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=hg002_chrY_paternal_14.1;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.1,hg002_chrY_paternal_14.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000019;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000019;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000019:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=hg002_chrY_paternal_14.1;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.1,hg002_chrY_paternal_14.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000019;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000019;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000019:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=hg002_chrY_paternal_14.1;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.1,hg002_chrY_paternal_14.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000019;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000019;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000019:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=hg002_chrY_paternal_14.1;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.1,hg002_chrY_paternal_14.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000019;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000019;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000019:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111756	.	+	2	source_transcript=hg002_chrY_paternal_14.1;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.1,hg002_chrY_paternal_14.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000019;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000019;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000019:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=hg002_chrY_paternal_14.1;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.1,hg002_chrY_paternal_14.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000019;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000019;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000019:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=hg002_chrY_paternal_14.1;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.1,hg002_chrY_paternal_14.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000019;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000019;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000019:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1112722	1112751	.	+	0	source_transcript=hg002_chrY_paternal_14.1;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.1,hg002_chrY_paternal_14.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000019;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000019;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000019:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=hg002_chrY_paternal_14.1;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.1,hg002_chrY_paternal_14.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000019;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000019;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000019:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=hg002_chrY_paternal_14.1;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.1,hg002_chrY_paternal_14.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000019;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000019;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000019:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1118926	1119061	.	+	0	source_transcript=hg002_chrY_paternal_14.1;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.1,hg002_chrY_paternal_14.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000019;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000019;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000019:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1122358	.	+	.	source_transcript=hg002_chrY_paternal_14.1;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.1,hg002_chrY_paternal_14.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000019;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000019;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000019:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1122359	1122455	.	+	.	source_transcript=hg002_chrY_paternal_14.1;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.1,hg002_chrY_paternal_14.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000019;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000019;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000019:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1122359	1122455	.	+	2	source_transcript=hg002_chrY_paternal_14.1;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.1,hg002_chrY_paternal_14.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000019;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000019;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000019:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1122456	1123881	.	+	.	source_transcript=hg002_chrY_paternal_14.1;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.1,hg002_chrY_paternal_14.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000019;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000019;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000019:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=hg002_chrY_paternal_14.1;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.1,hg002_chrY_paternal_14.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000019;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000019;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000019:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1123882	1123963	.	+	1	source_transcript=hg002_chrY_paternal_14.1;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.1,hg002_chrY_paternal_14.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000019;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000019;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000019:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1124063	.	+	.	source_transcript=hg002_chrY_paternal_14.1;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.1,hg002_chrY_paternal_14.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000019;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000019;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000019:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1124064	1124377	.	+	.	source_transcript=hg002_chrY_paternal_14.1;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.1,hg002_chrY_paternal_14.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000019;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000019;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000019:12;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1124064	1124171	.	+	0	source_transcript=hg002_chrY_paternal_14.1;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.1,hg002_chrY_paternal_14.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000019;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000019;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000019:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1124169	1124171	.	+	0	source_transcript=hg002_chrY_paternal_14.1;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.1,hg002_chrY_paternal_14.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000019;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000019;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000019;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083966	1128726	100	+	.	source_transcript=hg002_chrY_paternal_14.10;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.10;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.10,hg002_chrY_paternal_14.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_G0000009;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=HG003_chrY_T0000020;Name=CSF2RA
HG003_chrY	CAT	exon	1083966	1084031	.	+	.	source_transcript=hg002_chrY_paternal_14.10;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.10,hg002_chrY_paternal_14.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000020;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000020:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1099694	.	+	.	source_transcript=hg002_chrY_paternal_14.10;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.10,hg002_chrY_paternal_14.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000020;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000020:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=hg002_chrY_paternal_14.10;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.10,hg002_chrY_paternal_14.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000020;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000020:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=hg002_chrY_paternal_14.10;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.10,hg002_chrY_paternal_14.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000020;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000020:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=hg002_chrY_paternal_14.10;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.10,hg002_chrY_paternal_14.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000020;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000020;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=hg002_chrY_paternal_14.10;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.10,hg002_chrY_paternal_14.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000020;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000020:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=hg002_chrY_paternal_14.10;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.10,hg002_chrY_paternal_14.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000020;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000020:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=hg002_chrY_paternal_14.10;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.10,hg002_chrY_paternal_14.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000020;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000020:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=hg002_chrY_paternal_14.10;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.10,hg002_chrY_paternal_14.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000020;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000020:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=hg002_chrY_paternal_14.10;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.10,hg002_chrY_paternal_14.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000020;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000020:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=hg002_chrY_paternal_14.10;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.10,hg002_chrY_paternal_14.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000020;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000020:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=hg002_chrY_paternal_14.10;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.10,hg002_chrY_paternal_14.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000020;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000020:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=hg002_chrY_paternal_14.10;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.10,hg002_chrY_paternal_14.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000020;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000020:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=hg002_chrY_paternal_14.10;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.10,hg002_chrY_paternal_14.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000020;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000020:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=hg002_chrY_paternal_14.10;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.10,hg002_chrY_paternal_14.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000020;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000020:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=hg002_chrY_paternal_14.10;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.10,hg002_chrY_paternal_14.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000020;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000020:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=hg002_chrY_paternal_14.10;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.10,hg002_chrY_paternal_14.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000020;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000020:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=hg002_chrY_paternal_14.10;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.10,hg002_chrY_paternal_14.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000020;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000020:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=hg002_chrY_paternal_14.10;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.10,hg002_chrY_paternal_14.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000020;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000020:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111756	.	+	2	source_transcript=hg002_chrY_paternal_14.10;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.10,hg002_chrY_paternal_14.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000020;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000020:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=hg002_chrY_paternal_14.10;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.10,hg002_chrY_paternal_14.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000020;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000020:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=hg002_chrY_paternal_14.10;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.10,hg002_chrY_paternal_14.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000020;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000020:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1112722	1112751	.	+	0	source_transcript=hg002_chrY_paternal_14.10;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.10,hg002_chrY_paternal_14.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000020;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000020:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=hg002_chrY_paternal_14.10;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.10,hg002_chrY_paternal_14.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000020;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000020:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=hg002_chrY_paternal_14.10;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.10,hg002_chrY_paternal_14.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000020;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000020:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1118926	1119061	.	+	0	source_transcript=hg002_chrY_paternal_14.10;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.10,hg002_chrY_paternal_14.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000020;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000020:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1121696	.	+	.	source_transcript=hg002_chrY_paternal_14.10;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.10,hg002_chrY_paternal_14.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000020;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000020:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1121697	1121798	.	+	.	source_transcript=hg002_chrY_paternal_14.10;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.10,hg002_chrY_paternal_14.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000020;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000020:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1121697	1121798	.	+	2	source_transcript=hg002_chrY_paternal_14.10;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.10,hg002_chrY_paternal_14.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000020;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000020:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1121799	1122358	.	+	.	source_transcript=hg002_chrY_paternal_14.10;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.10,hg002_chrY_paternal_14.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000020;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000020:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1122359	1122455	.	+	.	source_transcript=hg002_chrY_paternal_14.10;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.10,hg002_chrY_paternal_14.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000020;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000020:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1122359	1122455	.	+	2	source_transcript=hg002_chrY_paternal_14.10;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.10,hg002_chrY_paternal_14.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000020;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000020:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1122456	1123881	.	+	.	source_transcript=hg002_chrY_paternal_14.10;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.10,hg002_chrY_paternal_14.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000020;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000020:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=hg002_chrY_paternal_14.10;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.10,hg002_chrY_paternal_14.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000020;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000020:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1123882	1123963	.	+	1	source_transcript=hg002_chrY_paternal_14.10;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.10,hg002_chrY_paternal_14.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000020;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000020:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1128192	.	+	.	source_transcript=hg002_chrY_paternal_14.10;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.10,hg002_chrY_paternal_14.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000020;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000020:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1128193	1128726	.	+	.	source_transcript=hg002_chrY_paternal_14.10;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.10,hg002_chrY_paternal_14.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000020;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000020:12;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1128193	1128270	.	+	0	source_transcript=hg002_chrY_paternal_14.10;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.10,hg002_chrY_paternal_14.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000020;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000020:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1128268	1128270	.	+	0	source_transcript=hg002_chrY_paternal_14.10;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.10,hg002_chrY_paternal_14.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000020;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000020;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083966	1128726	100	+	.	source_transcript=hg002_chrY_paternal_14.11;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.11;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.11,hg002_chrY_paternal_14.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_G0000009;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=HG003_chrY_T0000021;Name=CSF2RA
HG003_chrY	CAT	exon	1083966	1084031	.	+	.	source_transcript=hg002_chrY_paternal_14.11;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.11,hg002_chrY_paternal_14.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000021;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000021:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1091734	.	+	.	source_transcript=hg002_chrY_paternal_14.11;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.11,hg002_chrY_paternal_14.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000021;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000021:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1091735	1091822	.	+	.	source_transcript=hg002_chrY_paternal_14.11;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.11,hg002_chrY_paternal_14.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000021;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000021:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1091823	1099694	.	+	.	source_transcript=hg002_chrY_paternal_14.11;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.11,hg002_chrY_paternal_14.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000021;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000021:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=hg002_chrY_paternal_14.11;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.11,hg002_chrY_paternal_14.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000021;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000021:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=hg002_chrY_paternal_14.11;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.11,hg002_chrY_paternal_14.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000021;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000021:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=hg002_chrY_paternal_14.11;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.11,hg002_chrY_paternal_14.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000021;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000021;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=hg002_chrY_paternal_14.11;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.11,hg002_chrY_paternal_14.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000021;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000021:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=hg002_chrY_paternal_14.11;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.11,hg002_chrY_paternal_14.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000021;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000021:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=hg002_chrY_paternal_14.11;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.11,hg002_chrY_paternal_14.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000021;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000021:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=hg002_chrY_paternal_14.11;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.11,hg002_chrY_paternal_14.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000021;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000021:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=hg002_chrY_paternal_14.11;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.11,hg002_chrY_paternal_14.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000021;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000021:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=hg002_chrY_paternal_14.11;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.11,hg002_chrY_paternal_14.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000021;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000021:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=hg002_chrY_paternal_14.11;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.11,hg002_chrY_paternal_14.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000021;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000021:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=hg002_chrY_paternal_14.11;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.11,hg002_chrY_paternal_14.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000021;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000021:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=hg002_chrY_paternal_14.11;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.11,hg002_chrY_paternal_14.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000021;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000021:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=hg002_chrY_paternal_14.11;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.11,hg002_chrY_paternal_14.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000021;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000021:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=hg002_chrY_paternal_14.11;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.11,hg002_chrY_paternal_14.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000021;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000021:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=hg002_chrY_paternal_14.11;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.11,hg002_chrY_paternal_14.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000021;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000021:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=hg002_chrY_paternal_14.11;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.11,hg002_chrY_paternal_14.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000021;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000021:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=hg002_chrY_paternal_14.11;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.11,hg002_chrY_paternal_14.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000021;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000021:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111756	.	+	2	source_transcript=hg002_chrY_paternal_14.11;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.11,hg002_chrY_paternal_14.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000021;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000021:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=hg002_chrY_paternal_14.11;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.11,hg002_chrY_paternal_14.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000021;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000021:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=hg002_chrY_paternal_14.11;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.11,hg002_chrY_paternal_14.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000021;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000021:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1112722	1112751	.	+	0	source_transcript=hg002_chrY_paternal_14.11;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.11,hg002_chrY_paternal_14.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000021;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000021:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=hg002_chrY_paternal_14.11;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.11,hg002_chrY_paternal_14.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000021;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000021:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=hg002_chrY_paternal_14.11;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.11,hg002_chrY_paternal_14.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000021;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000021:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1118926	1119061	.	+	0	source_transcript=hg002_chrY_paternal_14.11;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.11,hg002_chrY_paternal_14.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000021;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000021:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1121696	.	+	.	source_transcript=hg002_chrY_paternal_14.11;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.11,hg002_chrY_paternal_14.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000021;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000021:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1121697	1121798	.	+	.	source_transcript=hg002_chrY_paternal_14.11;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.11,hg002_chrY_paternal_14.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000021;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000021:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1121697	1121798	.	+	2	source_transcript=hg002_chrY_paternal_14.11;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.11,hg002_chrY_paternal_14.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000021;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000021:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1121799	1122358	.	+	.	source_transcript=hg002_chrY_paternal_14.11;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.11,hg002_chrY_paternal_14.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000021;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000021:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1122359	1122455	.	+	.	source_transcript=hg002_chrY_paternal_14.11;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.11,hg002_chrY_paternal_14.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000021;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000021:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1122359	1122455	.	+	2	source_transcript=hg002_chrY_paternal_14.11;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.11,hg002_chrY_paternal_14.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000021;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000021:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1122456	1123881	.	+	.	source_transcript=hg002_chrY_paternal_14.11;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.11,hg002_chrY_paternal_14.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000021;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000021:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=hg002_chrY_paternal_14.11;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.11,hg002_chrY_paternal_14.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000021;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000021:12;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1123882	1123963	.	+	1	source_transcript=hg002_chrY_paternal_14.11;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.11,hg002_chrY_paternal_14.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000021;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000021:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1128192	.	+	.	source_transcript=hg002_chrY_paternal_14.11;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.11,hg002_chrY_paternal_14.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000021;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000021:12;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1128193	1128726	.	+	.	source_transcript=hg002_chrY_paternal_14.11;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.11,hg002_chrY_paternal_14.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000021;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000021:13;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1128193	1128270	.	+	0	source_transcript=hg002_chrY_paternal_14.11;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.11,hg002_chrY_paternal_14.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000021;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000021:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1128268	1128270	.	+	0	source_transcript=hg002_chrY_paternal_14.11;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.11,hg002_chrY_paternal_14.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000021;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000021;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083966	1128726	100	+	.	source_transcript=hg002_chrY_paternal_14.12;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.12;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.12,hg002_chrY_paternal_14.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000022;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_G0000009;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=HG003_chrY_T0000022;Name=CSF2RA
HG003_chrY	CAT	exon	1083966	1084031	.	+	.	source_transcript=hg002_chrY_paternal_14.12;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.12,hg002_chrY_paternal_14.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000022;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000022;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000022:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1099694	.	+	.	source_transcript=hg002_chrY_paternal_14.12;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.12,hg002_chrY_paternal_14.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000022;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000022;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000022:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=hg002_chrY_paternal_14.12;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.12,hg002_chrY_paternal_14.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000022;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000022;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000022:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=hg002_chrY_paternal_14.12;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.12,hg002_chrY_paternal_14.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000022;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000022;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000022:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=hg002_chrY_paternal_14.12;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.12,hg002_chrY_paternal_14.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000022;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000022;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000022;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=hg002_chrY_paternal_14.12;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.12,hg002_chrY_paternal_14.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000022;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000022;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000022:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=hg002_chrY_paternal_14.12;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.12,hg002_chrY_paternal_14.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000022;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000022;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000022:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=hg002_chrY_paternal_14.12;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.12,hg002_chrY_paternal_14.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000022;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000022;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000022:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=hg002_chrY_paternal_14.12;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.12,hg002_chrY_paternal_14.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000022;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000022;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000022:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=hg002_chrY_paternal_14.12;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.12,hg002_chrY_paternal_14.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000022;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000022;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000022:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=hg002_chrY_paternal_14.12;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.12,hg002_chrY_paternal_14.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000022;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000022;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000022:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=hg002_chrY_paternal_14.12;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.12,hg002_chrY_paternal_14.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000022;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000022;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000022:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=hg002_chrY_paternal_14.12;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.12,hg002_chrY_paternal_14.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000022;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000022;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000022:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=hg002_chrY_paternal_14.12;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.12,hg002_chrY_paternal_14.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000022;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000022;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000022:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=hg002_chrY_paternal_14.12;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.12,hg002_chrY_paternal_14.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000022;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000022;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000022:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=hg002_chrY_paternal_14.12;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.12,hg002_chrY_paternal_14.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000022;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000022;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000022:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=hg002_chrY_paternal_14.12;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.12,hg002_chrY_paternal_14.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000022;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000022;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000022:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=hg002_chrY_paternal_14.12;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.12,hg002_chrY_paternal_14.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000022;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000022;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000022:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=hg002_chrY_paternal_14.12;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.12,hg002_chrY_paternal_14.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000022;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000022;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000022:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111756	.	+	2	source_transcript=hg002_chrY_paternal_14.12;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.12,hg002_chrY_paternal_14.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000022;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000022;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000022:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=hg002_chrY_paternal_14.12;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.12,hg002_chrY_paternal_14.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000022;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000022;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000022:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=hg002_chrY_paternal_14.12;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.12,hg002_chrY_paternal_14.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000022;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000022;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000022:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1112722	1112751	.	+	0	source_transcript=hg002_chrY_paternal_14.12;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.12,hg002_chrY_paternal_14.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000022;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000022;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000022:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=hg002_chrY_paternal_14.12;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.12,hg002_chrY_paternal_14.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000022;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000022;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000022:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=hg002_chrY_paternal_14.12;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.12,hg002_chrY_paternal_14.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000022;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000022;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000022:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1118926	1119061	.	+	0	source_transcript=hg002_chrY_paternal_14.12;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.12,hg002_chrY_paternal_14.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000022;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000022;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000022:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1122358	.	+	.	source_transcript=hg002_chrY_paternal_14.12;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.12,hg002_chrY_paternal_14.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000022;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000022;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000022:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1122359	1122455	.	+	.	source_transcript=hg002_chrY_paternal_14.12;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.12,hg002_chrY_paternal_14.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000022;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000022;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000022:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1122359	1122455	.	+	2	source_transcript=hg002_chrY_paternal_14.12;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.12,hg002_chrY_paternal_14.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000022;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000022;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000022:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1122456	1123881	.	+	.	source_transcript=hg002_chrY_paternal_14.12;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.12,hg002_chrY_paternal_14.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000022;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000022;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000022:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=hg002_chrY_paternal_14.12;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.12,hg002_chrY_paternal_14.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000022;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000022;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000022:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1123882	1123963	.	+	1	source_transcript=hg002_chrY_paternal_14.12;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.12,hg002_chrY_paternal_14.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000022;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000022;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000022:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1128192	.	+	.	source_transcript=hg002_chrY_paternal_14.12;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.12,hg002_chrY_paternal_14.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000022;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000022;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000022:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1128193	1128726	.	+	.	source_transcript=hg002_chrY_paternal_14.12;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.12,hg002_chrY_paternal_14.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000022;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000022;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000022:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1128193	1128270	.	+	0	source_transcript=hg002_chrY_paternal_14.12;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.12,hg002_chrY_paternal_14.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000022;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000022;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000022:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1128268	1128270	.	+	0	source_transcript=hg002_chrY_paternal_14.12;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.12,hg002_chrY_paternal_14.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000022;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000022;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000022;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083966	1128726	100	+	.	source_transcript=hg002_chrY_paternal_14.13;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.13;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.13,hg002_chrY_paternal_14.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_G0000009;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=HG003_chrY_T0000023;Name=CSF2RA
HG003_chrY	CAT	exon	1083966	1084031	.	+	.	source_transcript=hg002_chrY_paternal_14.13;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.13,hg002_chrY_paternal_14.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000023;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000023:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1091744	.	+	.	source_transcript=hg002_chrY_paternal_14.13;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.13,hg002_chrY_paternal_14.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000023;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000023:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1091745	1091798	.	+	.	source_transcript=hg002_chrY_paternal_14.13;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.13,hg002_chrY_paternal_14.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000023;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000023:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1091799	1099694	.	+	.	source_transcript=hg002_chrY_paternal_14.13;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.13,hg002_chrY_paternal_14.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000023;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000023:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=hg002_chrY_paternal_14.13;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.13,hg002_chrY_paternal_14.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000023;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000023:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=hg002_chrY_paternal_14.13;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.13,hg002_chrY_paternal_14.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000023;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000023:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=hg002_chrY_paternal_14.13;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.13,hg002_chrY_paternal_14.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000023;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000023;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=hg002_chrY_paternal_14.13;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.13,hg002_chrY_paternal_14.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000023;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000023:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=hg002_chrY_paternal_14.13;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.13,hg002_chrY_paternal_14.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000023;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000023:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=hg002_chrY_paternal_14.13;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.13,hg002_chrY_paternal_14.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000023;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000023:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=hg002_chrY_paternal_14.13;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.13,hg002_chrY_paternal_14.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000023;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000023:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=hg002_chrY_paternal_14.13;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.13,hg002_chrY_paternal_14.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000023;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000023:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=hg002_chrY_paternal_14.13;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.13,hg002_chrY_paternal_14.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000023;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000023:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=hg002_chrY_paternal_14.13;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.13,hg002_chrY_paternal_14.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000023;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000023:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=hg002_chrY_paternal_14.13;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.13,hg002_chrY_paternal_14.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000023;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000023:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=hg002_chrY_paternal_14.13;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.13,hg002_chrY_paternal_14.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000023;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000023:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=hg002_chrY_paternal_14.13;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.13,hg002_chrY_paternal_14.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000023;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000023:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=hg002_chrY_paternal_14.13;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.13,hg002_chrY_paternal_14.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000023;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000023:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=hg002_chrY_paternal_14.13;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.13,hg002_chrY_paternal_14.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000023;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000023:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=hg002_chrY_paternal_14.13;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.13,hg002_chrY_paternal_14.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000023;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000023:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=hg002_chrY_paternal_14.13;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.13,hg002_chrY_paternal_14.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000023;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000023:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111756	.	+	2	source_transcript=hg002_chrY_paternal_14.13;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.13,hg002_chrY_paternal_14.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000023;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000023:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=hg002_chrY_paternal_14.13;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.13,hg002_chrY_paternal_14.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000023;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000023:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=hg002_chrY_paternal_14.13;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.13,hg002_chrY_paternal_14.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000023;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000023:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1112722	1112751	.	+	0	source_transcript=hg002_chrY_paternal_14.13;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.13,hg002_chrY_paternal_14.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000023;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000023:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=hg002_chrY_paternal_14.13;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.13,hg002_chrY_paternal_14.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000023;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000023:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=hg002_chrY_paternal_14.13;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.13,hg002_chrY_paternal_14.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000023;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000023:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1118926	1119061	.	+	0	source_transcript=hg002_chrY_paternal_14.13;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.13,hg002_chrY_paternal_14.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000023;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000023:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1122358	.	+	.	source_transcript=hg002_chrY_paternal_14.13;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.13,hg002_chrY_paternal_14.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000023;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000023:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1122359	1122455	.	+	.	source_transcript=hg002_chrY_paternal_14.13;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.13,hg002_chrY_paternal_14.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000023;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000023:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1122359	1122455	.	+	2	source_transcript=hg002_chrY_paternal_14.13;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.13,hg002_chrY_paternal_14.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000023;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000023:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1122456	1123881	.	+	.	source_transcript=hg002_chrY_paternal_14.13;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.13,hg002_chrY_paternal_14.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000023;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000023:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=hg002_chrY_paternal_14.13;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.13,hg002_chrY_paternal_14.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000023;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000023:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1123882	1123963	.	+	1	source_transcript=hg002_chrY_paternal_14.13;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.13,hg002_chrY_paternal_14.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000023;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000023:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1128192	.	+	.	source_transcript=hg002_chrY_paternal_14.13;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.13,hg002_chrY_paternal_14.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000023;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000023:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1128193	1128726	.	+	.	source_transcript=hg002_chrY_paternal_14.13;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.13,hg002_chrY_paternal_14.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000023;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000023:12;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1128193	1128270	.	+	0	source_transcript=hg002_chrY_paternal_14.13;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.13,hg002_chrY_paternal_14.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000023;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000023:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1128268	1128270	.	+	0	source_transcript=hg002_chrY_paternal_14.13;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.13,hg002_chrY_paternal_14.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000023;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000023;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083966	1128726	100	+	.	source_transcript=hg002_chrY_paternal_14.14;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.14;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.14,hg002_chrY_paternal_14.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_G0000009;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=HG003_chrY_T0000024;Name=CSF2RA
HG003_chrY	CAT	exon	1083966	1084031	.	+	.	source_transcript=hg002_chrY_paternal_14.14;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.14,hg002_chrY_paternal_14.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000024;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000024:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1091734	.	+	.	source_transcript=hg002_chrY_paternal_14.14;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.14,hg002_chrY_paternal_14.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000024;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000024:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1091735	1091798	.	+	.	source_transcript=hg002_chrY_paternal_14.14;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.14,hg002_chrY_paternal_14.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000024;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000024:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1091799	1099694	.	+	.	source_transcript=hg002_chrY_paternal_14.14;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.14,hg002_chrY_paternal_14.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000024;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000024:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=hg002_chrY_paternal_14.14;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.14,hg002_chrY_paternal_14.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000024;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000024:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=hg002_chrY_paternal_14.14;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.14,hg002_chrY_paternal_14.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000024;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000024:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=hg002_chrY_paternal_14.14;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.14,hg002_chrY_paternal_14.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000024;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000024;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=hg002_chrY_paternal_14.14;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.14,hg002_chrY_paternal_14.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000024;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000024:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=hg002_chrY_paternal_14.14;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.14,hg002_chrY_paternal_14.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000024;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000024:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=hg002_chrY_paternal_14.14;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.14,hg002_chrY_paternal_14.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000024;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000024:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=hg002_chrY_paternal_14.14;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.14,hg002_chrY_paternal_14.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000024;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000024:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=hg002_chrY_paternal_14.14;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.14,hg002_chrY_paternal_14.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000024;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000024:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=hg002_chrY_paternal_14.14;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.14,hg002_chrY_paternal_14.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000024;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000024:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=hg002_chrY_paternal_14.14;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.14,hg002_chrY_paternal_14.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000024;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000024:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=hg002_chrY_paternal_14.14;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.14,hg002_chrY_paternal_14.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000024;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000024:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=hg002_chrY_paternal_14.14;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.14,hg002_chrY_paternal_14.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000024;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000024:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=hg002_chrY_paternal_14.14;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.14,hg002_chrY_paternal_14.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000024;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000024:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=hg002_chrY_paternal_14.14;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.14,hg002_chrY_paternal_14.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000024;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000024:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=hg002_chrY_paternal_14.14;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.14,hg002_chrY_paternal_14.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000024;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000024:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=hg002_chrY_paternal_14.14;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.14,hg002_chrY_paternal_14.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000024;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000024:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=hg002_chrY_paternal_14.14;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.14,hg002_chrY_paternal_14.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000024;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000024:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111756	.	+	2	source_transcript=hg002_chrY_paternal_14.14;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.14,hg002_chrY_paternal_14.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000024;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000024:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1118925	.	+	.	source_transcript=hg002_chrY_paternal_14.14;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.14,hg002_chrY_paternal_14.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000024;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000024:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=hg002_chrY_paternal_14.14;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.14,hg002_chrY_paternal_14.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000024;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000024:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1118926	1119061	.	+	0	source_transcript=hg002_chrY_paternal_14.14;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.14,hg002_chrY_paternal_14.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000024;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000024:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1122358	.	+	.	source_transcript=hg002_chrY_paternal_14.14;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.14,hg002_chrY_paternal_14.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000024;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000024:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1122359	1122455	.	+	.	source_transcript=hg002_chrY_paternal_14.14;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.14,hg002_chrY_paternal_14.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000024;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000024:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1122359	1122455	.	+	2	source_transcript=hg002_chrY_paternal_14.14;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.14,hg002_chrY_paternal_14.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000024;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000024:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1122456	1123881	.	+	.	source_transcript=hg002_chrY_paternal_14.14;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.14,hg002_chrY_paternal_14.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000024;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000024:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=hg002_chrY_paternal_14.14;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.14,hg002_chrY_paternal_14.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000024;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000024:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1123882	1123963	.	+	1	source_transcript=hg002_chrY_paternal_14.14;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.14,hg002_chrY_paternal_14.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000024;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000024:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1128192	.	+	.	source_transcript=hg002_chrY_paternal_14.14;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.14,hg002_chrY_paternal_14.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000024;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000024:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1128193	1128726	.	+	.	source_transcript=hg002_chrY_paternal_14.14;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.14,hg002_chrY_paternal_14.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000024;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000024:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1128193	1128270	.	+	0	source_transcript=hg002_chrY_paternal_14.14;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.14,hg002_chrY_paternal_14.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000024;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000024:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1128268	1128270	.	+	0	source_transcript=hg002_chrY_paternal_14.14;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.14,hg002_chrY_paternal_14.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000024;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000024;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083966	1128726	100	+	.	source_transcript=hg002_chrY_paternal_14.15;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.15;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.15,hg002_chrY_paternal_14.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000025;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_G0000009;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=HG003_chrY_T0000025;Name=CSF2RA
HG003_chrY	CAT	exon	1083966	1084031	.	+	.	source_transcript=hg002_chrY_paternal_14.15;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.15,hg002_chrY_paternal_14.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000025;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000025;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000025:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1091734	.	+	.	source_transcript=hg002_chrY_paternal_14.15;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.15,hg002_chrY_paternal_14.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000025;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000025;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000025:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1091735	1091798	.	+	.	source_transcript=hg002_chrY_paternal_14.15;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.15,hg002_chrY_paternal_14.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000025;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000025;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000025:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1091799	1099694	.	+	.	source_transcript=hg002_chrY_paternal_14.15;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.15,hg002_chrY_paternal_14.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000025;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000025;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000025:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=hg002_chrY_paternal_14.15;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.15,hg002_chrY_paternal_14.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000025;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000025;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000025:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=hg002_chrY_paternal_14.15;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.15,hg002_chrY_paternal_14.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000025;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000025;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000025:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=hg002_chrY_paternal_14.15;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.15,hg002_chrY_paternal_14.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000025;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000025;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000025;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=hg002_chrY_paternal_14.15;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.15,hg002_chrY_paternal_14.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000025;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000025;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000025:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=hg002_chrY_paternal_14.15;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.15,hg002_chrY_paternal_14.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000025;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000025;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000025:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=hg002_chrY_paternal_14.15;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.15,hg002_chrY_paternal_14.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000025;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000025;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000025:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=hg002_chrY_paternal_14.15;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.15,hg002_chrY_paternal_14.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000025;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000025;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000025:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=hg002_chrY_paternal_14.15;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.15,hg002_chrY_paternal_14.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000025;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000025;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000025:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=hg002_chrY_paternal_14.15;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.15,hg002_chrY_paternal_14.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000025;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000025;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000025:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=hg002_chrY_paternal_14.15;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.15,hg002_chrY_paternal_14.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000025;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000025;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000025:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=hg002_chrY_paternal_14.15;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.15,hg002_chrY_paternal_14.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000025;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000025;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000025:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=hg002_chrY_paternal_14.15;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.15,hg002_chrY_paternal_14.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000025;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000025;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000025:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=hg002_chrY_paternal_14.15;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.15,hg002_chrY_paternal_14.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000025;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000025;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000025:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=hg002_chrY_paternal_14.15;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.15,hg002_chrY_paternal_14.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000025;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000025;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000025:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=hg002_chrY_paternal_14.15;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.15,hg002_chrY_paternal_14.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000025;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000025;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000025:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111641	.	+	.	source_transcript=hg002_chrY_paternal_14.15;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.15,hg002_chrY_paternal_14.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000025;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000025;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000025:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111642	1111756	.	+	.	source_transcript=hg002_chrY_paternal_14.15;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.15,hg002_chrY_paternal_14.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000025;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000025;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000025:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111642	1111756	.	+	2	source_transcript=hg002_chrY_paternal_14.15;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.15,hg002_chrY_paternal_14.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000025;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000025;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000025:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=hg002_chrY_paternal_14.15;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.15,hg002_chrY_paternal_14.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000025;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000025;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000025:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=hg002_chrY_paternal_14.15;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.15,hg002_chrY_paternal_14.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000025;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000025;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000025:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1112722	1112751	.	+	1	source_transcript=hg002_chrY_paternal_14.15;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.15,hg002_chrY_paternal_14.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000025;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000025;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000025:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1117437	.	+	.	source_transcript=hg002_chrY_paternal_14.15;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.15,hg002_chrY_paternal_14.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000025;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000025;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000025:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1117438	1117500	.	+	.	source_transcript=hg002_chrY_paternal_14.15;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.15,hg002_chrY_paternal_14.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000025;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000025;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000025:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1117438	1117500	.	+	1	source_transcript=hg002_chrY_paternal_14.15;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.15,hg002_chrY_paternal_14.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000025;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000025;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000025:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1117501	1123881	.	+	.	source_transcript=hg002_chrY_paternal_14.15;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.15,hg002_chrY_paternal_14.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000025;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000025;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000025:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=hg002_chrY_paternal_14.15;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.15,hg002_chrY_paternal_14.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000025;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000025;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000025:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1123882	1123963	.	+	1	source_transcript=hg002_chrY_paternal_14.15;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.15,hg002_chrY_paternal_14.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000025;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000025;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000025:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1128192	.	+	.	source_transcript=hg002_chrY_paternal_14.15;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.15,hg002_chrY_paternal_14.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000025;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000025;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000025:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1128193	1128726	.	+	.	source_transcript=hg002_chrY_paternal_14.15;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.15,hg002_chrY_paternal_14.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000025;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000025;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000025:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1128193	1128270	.	+	0	source_transcript=hg002_chrY_paternal_14.15;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.15,hg002_chrY_paternal_14.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000025;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000025;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000025:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1128268	1128270	.	+	0	source_transcript=hg002_chrY_paternal_14.15;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.15,hg002_chrY_paternal_14.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000025;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000025;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000025;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083966	1128726	100	+	.	source_transcript=hg002_chrY_paternal_14.16;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.16;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.16,hg002_chrY_paternal_14.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000026;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_G0000009;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=HG003_chrY_T0000026;Name=CSF2RA
HG003_chrY	CAT	exon	1083966	1084031	.	+	.	source_transcript=hg002_chrY_paternal_14.16;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.16,hg002_chrY_paternal_14.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000026;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000026;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000026:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1087802	.	+	.	source_transcript=hg002_chrY_paternal_14.16;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.16,hg002_chrY_paternal_14.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000026;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000026;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000026:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1087803	1087924	.	+	.	source_transcript=hg002_chrY_paternal_14.16;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.16,hg002_chrY_paternal_14.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000026;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000026;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000026:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1087925	1091734	.	+	.	source_transcript=hg002_chrY_paternal_14.16;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.16,hg002_chrY_paternal_14.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000026;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000026;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000026:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1091735	1091822	.	+	.	source_transcript=hg002_chrY_paternal_14.16;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.16,hg002_chrY_paternal_14.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000026;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000026;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000026:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1091823	1099694	.	+	.	source_transcript=hg002_chrY_paternal_14.16;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.16,hg002_chrY_paternal_14.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000026;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000026;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000026:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=hg002_chrY_paternal_14.16;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.16,hg002_chrY_paternal_14.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000026;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000026;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000026:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=hg002_chrY_paternal_14.16;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.16,hg002_chrY_paternal_14.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000026;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000026;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000026:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=hg002_chrY_paternal_14.16;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.16,hg002_chrY_paternal_14.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000026;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000026;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000026;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=hg002_chrY_paternal_14.16;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.16,hg002_chrY_paternal_14.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000026;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000026;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000026:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=hg002_chrY_paternal_14.16;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.16,hg002_chrY_paternal_14.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000026;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000026;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000026:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=hg002_chrY_paternal_14.16;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.16,hg002_chrY_paternal_14.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000026;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000026;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000026:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=hg002_chrY_paternal_14.16;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.16,hg002_chrY_paternal_14.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000026;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000026;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000026:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=hg002_chrY_paternal_14.16;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.16,hg002_chrY_paternal_14.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000026;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000026;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000026:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=hg002_chrY_paternal_14.16;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.16,hg002_chrY_paternal_14.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000026;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000026;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000026:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=hg002_chrY_paternal_14.16;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.16,hg002_chrY_paternal_14.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000026;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000026;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000026:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=hg002_chrY_paternal_14.16;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.16,hg002_chrY_paternal_14.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000026;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000026;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000026:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=hg002_chrY_paternal_14.16;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.16,hg002_chrY_paternal_14.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000026;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000026;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000026:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=hg002_chrY_paternal_14.16;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.16,hg002_chrY_paternal_14.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000026;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000026;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000026:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=hg002_chrY_paternal_14.16;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.16,hg002_chrY_paternal_14.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000026;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000026;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000026:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=hg002_chrY_paternal_14.16;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.16,hg002_chrY_paternal_14.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000026;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000026;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000026:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=hg002_chrY_paternal_14.16;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.16,hg002_chrY_paternal_14.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000026;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000026;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000026:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=hg002_chrY_paternal_14.16;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.16,hg002_chrY_paternal_14.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000026;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000026;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000026:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111756	.	+	2	source_transcript=hg002_chrY_paternal_14.16;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.16,hg002_chrY_paternal_14.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000026;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000026;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000026:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=hg002_chrY_paternal_14.16;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.16,hg002_chrY_paternal_14.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000026;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000026;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000026:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=hg002_chrY_paternal_14.16;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.16,hg002_chrY_paternal_14.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000026;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000026;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000026:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1112722	1112751	.	+	0	source_transcript=hg002_chrY_paternal_14.16;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.16,hg002_chrY_paternal_14.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000026;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000026;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000026:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=hg002_chrY_paternal_14.16;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.16,hg002_chrY_paternal_14.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000026;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000026;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000026:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=hg002_chrY_paternal_14.16;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.16,hg002_chrY_paternal_14.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000026;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000026;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000026:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1118926	1119061	.	+	0	source_transcript=hg002_chrY_paternal_14.16;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.16,hg002_chrY_paternal_14.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000026;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000026;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000026:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1123881	.	+	.	source_transcript=hg002_chrY_paternal_14.16;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.16,hg002_chrY_paternal_14.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000026;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000026;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000026:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=hg002_chrY_paternal_14.16;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.16,hg002_chrY_paternal_14.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000026;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000026;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000026:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1123882	1123937	.	+	2	source_transcript=hg002_chrY_paternal_14.16;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.16,hg002_chrY_paternal_14.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000026;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000026;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000026:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1123935	1123937	.	+	0	source_transcript=hg002_chrY_paternal_14.16;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.16,hg002_chrY_paternal_14.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000026;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000026;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000026;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1128192	.	+	.	source_transcript=hg002_chrY_paternal_14.16;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.16,hg002_chrY_paternal_14.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000026;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000026;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000026:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1128193	1128726	.	+	.	source_transcript=hg002_chrY_paternal_14.16;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.16,hg002_chrY_paternal_14.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000026;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000026;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000026:12;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083966	1128726	100	+	.	source_transcript=hg002_chrY_paternal_14.17;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.17;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.17,hg002_chrY_paternal_14.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000027;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_G0000009;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=HG003_chrY_T0000027;Name=CSF2RA
HG003_chrY	CAT	exon	1083966	1084031	.	+	.	source_transcript=hg002_chrY_paternal_14.17;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.17,hg002_chrY_paternal_14.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000027;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000027;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000027:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1099694	.	+	.	source_transcript=hg002_chrY_paternal_14.17;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.17,hg002_chrY_paternal_14.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000027;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000027;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000027:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=hg002_chrY_paternal_14.17;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.17,hg002_chrY_paternal_14.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000027;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000027;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000027:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=hg002_chrY_paternal_14.17;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.17,hg002_chrY_paternal_14.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000027;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000027;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000027:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=hg002_chrY_paternal_14.17;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.17,hg002_chrY_paternal_14.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000027;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000027;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000027;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=hg002_chrY_paternal_14.17;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.17,hg002_chrY_paternal_14.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000027;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000027;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000027:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=hg002_chrY_paternal_14.17;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.17,hg002_chrY_paternal_14.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000027;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000027;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000027:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=hg002_chrY_paternal_14.17;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.17,hg002_chrY_paternal_14.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000027;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000027;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000027:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=hg002_chrY_paternal_14.17;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.17,hg002_chrY_paternal_14.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000027;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000027;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000027:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=hg002_chrY_paternal_14.17;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.17,hg002_chrY_paternal_14.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000027;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000027;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000027:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=hg002_chrY_paternal_14.17;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.17,hg002_chrY_paternal_14.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000027;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000027;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000027:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=hg002_chrY_paternal_14.17;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.17,hg002_chrY_paternal_14.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000027;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000027;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000027:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=hg002_chrY_paternal_14.17;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.17,hg002_chrY_paternal_14.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000027;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000027;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000027:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=hg002_chrY_paternal_14.17;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.17,hg002_chrY_paternal_14.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000027;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000027;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000027:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=hg002_chrY_paternal_14.17;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.17,hg002_chrY_paternal_14.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000027;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000027;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000027:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=hg002_chrY_paternal_14.17;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.17,hg002_chrY_paternal_14.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000027;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000027;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000027:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=hg002_chrY_paternal_14.17;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.17,hg002_chrY_paternal_14.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000027;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000027;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000027:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=hg002_chrY_paternal_14.17;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.17,hg002_chrY_paternal_14.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000027;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000027;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000027:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=hg002_chrY_paternal_14.17;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.17,hg002_chrY_paternal_14.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000027;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000027;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000027:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111756	.	+	2	source_transcript=hg002_chrY_paternal_14.17;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.17,hg002_chrY_paternal_14.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000027;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000027;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000027:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=hg002_chrY_paternal_14.17;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.17,hg002_chrY_paternal_14.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000027;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000027;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000027:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=hg002_chrY_paternal_14.17;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.17,hg002_chrY_paternal_14.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000027;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000027;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000027:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1112722	1112751	.	+	0	source_transcript=hg002_chrY_paternal_14.17;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.17,hg002_chrY_paternal_14.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000027;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000027;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000027:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=hg002_chrY_paternal_14.17;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.17,hg002_chrY_paternal_14.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000027;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000027;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000027:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=hg002_chrY_paternal_14.17;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.17,hg002_chrY_paternal_14.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000027;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000027;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000027:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1118926	1119061	.	+	0	source_transcript=hg002_chrY_paternal_14.17;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.17,hg002_chrY_paternal_14.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000027;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000027;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000027:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1123881	.	+	.	source_transcript=hg002_chrY_paternal_14.17;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.17,hg002_chrY_paternal_14.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000027;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000027;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000027:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=hg002_chrY_paternal_14.17;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.17,hg002_chrY_paternal_14.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000027;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000027;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000027:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1123882	1123937	.	+	2	source_transcript=hg002_chrY_paternal_14.17;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.17,hg002_chrY_paternal_14.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000027;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000027;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000027:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1123935	1123937	.	+	0	source_transcript=hg002_chrY_paternal_14.17;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.17,hg002_chrY_paternal_14.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000027;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000027;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000027;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1128192	.	+	.	source_transcript=hg002_chrY_paternal_14.17;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.17,hg002_chrY_paternal_14.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000027;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000027;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000027:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1128193	1128726	.	+	.	source_transcript=hg002_chrY_paternal_14.17;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.17,hg002_chrY_paternal_14.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000027;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000027;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000027:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083966	1128726	100	+	.	source_transcript=hg002_chrY_paternal_14.18;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.18;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.18,hg002_chrY_paternal_14.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_G0000009;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=HG003_chrY_T0000028;Name=CSF2RA
HG003_chrY	CAT	exon	1083966	1084031	.	+	.	source_transcript=hg002_chrY_paternal_14.18;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.18,hg002_chrY_paternal_14.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000028;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000028:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1091734	.	+	.	source_transcript=hg002_chrY_paternal_14.18;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.18,hg002_chrY_paternal_14.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000028;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000028:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1091735	1091822	.	+	.	source_transcript=hg002_chrY_paternal_14.18;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.18,hg002_chrY_paternal_14.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000028;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000028:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1091823	1099694	.	+	.	source_transcript=hg002_chrY_paternal_14.18;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.18,hg002_chrY_paternal_14.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000028;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000028:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=hg002_chrY_paternal_14.18;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.18,hg002_chrY_paternal_14.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000028;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000028:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=hg002_chrY_paternal_14.18;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.18,hg002_chrY_paternal_14.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000028;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000028:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=hg002_chrY_paternal_14.18;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.18,hg002_chrY_paternal_14.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000028;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000028;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=hg002_chrY_paternal_14.18;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.18,hg002_chrY_paternal_14.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000028;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000028:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=hg002_chrY_paternal_14.18;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.18,hg002_chrY_paternal_14.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000028;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000028:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=hg002_chrY_paternal_14.18;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.18,hg002_chrY_paternal_14.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000028;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000028:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=hg002_chrY_paternal_14.18;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.18,hg002_chrY_paternal_14.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000028;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000028:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=hg002_chrY_paternal_14.18;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.18,hg002_chrY_paternal_14.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000028;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000028:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=hg002_chrY_paternal_14.18;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.18,hg002_chrY_paternal_14.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000028;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000028:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=hg002_chrY_paternal_14.18;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.18,hg002_chrY_paternal_14.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000028;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000028:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=hg002_chrY_paternal_14.18;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.18,hg002_chrY_paternal_14.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000028;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000028:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=hg002_chrY_paternal_14.18;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.18,hg002_chrY_paternal_14.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000028;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000028:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=hg002_chrY_paternal_14.18;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.18,hg002_chrY_paternal_14.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000028;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000028:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=hg002_chrY_paternal_14.18;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.18,hg002_chrY_paternal_14.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000028;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000028:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=hg002_chrY_paternal_14.18;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.18,hg002_chrY_paternal_14.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000028;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000028:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=hg002_chrY_paternal_14.18;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.18,hg002_chrY_paternal_14.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000028;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000028:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=hg002_chrY_paternal_14.18;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.18,hg002_chrY_paternal_14.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000028;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000028:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111756	.	+	2	source_transcript=hg002_chrY_paternal_14.18;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.18,hg002_chrY_paternal_14.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000028;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000028:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=hg002_chrY_paternal_14.18;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.18,hg002_chrY_paternal_14.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000028;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000028:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=hg002_chrY_paternal_14.18;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.18,hg002_chrY_paternal_14.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000028;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000028:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1112722	1112751	.	+	0	source_transcript=hg002_chrY_paternal_14.18;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.18,hg002_chrY_paternal_14.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000028;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000028:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=hg002_chrY_paternal_14.18;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.18,hg002_chrY_paternal_14.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000028;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000028:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=hg002_chrY_paternal_14.18;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.18,hg002_chrY_paternal_14.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000028;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000028:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1118926	1119061	.	+	0	source_transcript=hg002_chrY_paternal_14.18;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.18,hg002_chrY_paternal_14.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000028;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000028:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1123881	.	+	.	source_transcript=hg002_chrY_paternal_14.18;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.18,hg002_chrY_paternal_14.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000028;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000028:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=hg002_chrY_paternal_14.18;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.18,hg002_chrY_paternal_14.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000028;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000028:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1123882	1123937	.	+	2	source_transcript=hg002_chrY_paternal_14.18;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.18,hg002_chrY_paternal_14.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000028;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000028:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1123935	1123937	.	+	0	source_transcript=hg002_chrY_paternal_14.18;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.18,hg002_chrY_paternal_14.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000028;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000028;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1128192	.	+	.	source_transcript=hg002_chrY_paternal_14.18;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.18,hg002_chrY_paternal_14.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000028;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000028:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1128193	1128726	.	+	.	source_transcript=hg002_chrY_paternal_14.18;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.18,hg002_chrY_paternal_14.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000028;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000028:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083966	1128726	100	+	.	source_transcript=hg002_chrY_paternal_14.19;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.19;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.19,hg002_chrY_paternal_14.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000029;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_G0000009;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=HG003_chrY_T0000029;Name=CSF2RA
HG003_chrY	CAT	exon	1083966	1084031	.	+	.	source_transcript=hg002_chrY_paternal_14.19;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.19,hg002_chrY_paternal_14.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000029;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000029;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000029:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1091734	.	+	.	source_transcript=hg002_chrY_paternal_14.19;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.19,hg002_chrY_paternal_14.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000029;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000029;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000029:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1091735	1091822	.	+	.	source_transcript=hg002_chrY_paternal_14.19;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.19,hg002_chrY_paternal_14.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000029;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000029;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000029:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1091823	1099694	.	+	.	source_transcript=hg002_chrY_paternal_14.19;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.19,hg002_chrY_paternal_14.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000029;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000029;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000029:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=hg002_chrY_paternal_14.19;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.19,hg002_chrY_paternal_14.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000029;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000029;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000029:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=hg002_chrY_paternal_14.19;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.19,hg002_chrY_paternal_14.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000029;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000029;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000029:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=hg002_chrY_paternal_14.19;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.19,hg002_chrY_paternal_14.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000029;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000029;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000029;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=hg002_chrY_paternal_14.19;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.19,hg002_chrY_paternal_14.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000029;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000029;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000029:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=hg002_chrY_paternal_14.19;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.19,hg002_chrY_paternal_14.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000029;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000029;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000029:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=hg002_chrY_paternal_14.19;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.19,hg002_chrY_paternal_14.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000029;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000029;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000029:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=hg002_chrY_paternal_14.19;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.19,hg002_chrY_paternal_14.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000029;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000029;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000029:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=hg002_chrY_paternal_14.19;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.19,hg002_chrY_paternal_14.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000029;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000029;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000029:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=hg002_chrY_paternal_14.19;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.19,hg002_chrY_paternal_14.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000029;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000029;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000029:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=hg002_chrY_paternal_14.19;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.19,hg002_chrY_paternal_14.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000029;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000029;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000029:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=hg002_chrY_paternal_14.19;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.19,hg002_chrY_paternal_14.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000029;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000029;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000029:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=hg002_chrY_paternal_14.19;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.19,hg002_chrY_paternal_14.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000029;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000029;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000029:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=hg002_chrY_paternal_14.19;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.19,hg002_chrY_paternal_14.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000029;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000029;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000029:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=hg002_chrY_paternal_14.19;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.19,hg002_chrY_paternal_14.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000029;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000029;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000029:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=hg002_chrY_paternal_14.19;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.19,hg002_chrY_paternal_14.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000029;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000029;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000029:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=hg002_chrY_paternal_14.19;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.19,hg002_chrY_paternal_14.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000029;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000029;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000029:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=hg002_chrY_paternal_14.19;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.19,hg002_chrY_paternal_14.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000029;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000029;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000029:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111756	.	+	2	source_transcript=hg002_chrY_paternal_14.19;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.19,hg002_chrY_paternal_14.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000029;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000029;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000029:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=hg002_chrY_paternal_14.19;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.19,hg002_chrY_paternal_14.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000029;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000029;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000029:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=hg002_chrY_paternal_14.19;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.19,hg002_chrY_paternal_14.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000029;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000029;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000029:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1112722	1112751	.	+	0	source_transcript=hg002_chrY_paternal_14.19;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.19,hg002_chrY_paternal_14.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000029;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000029;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000029:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=hg002_chrY_paternal_14.19;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.19,hg002_chrY_paternal_14.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000029;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000029;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000029:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=hg002_chrY_paternal_14.19;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.19,hg002_chrY_paternal_14.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000029;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000029;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000029:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1118926	1119061	.	+	0	source_transcript=hg002_chrY_paternal_14.19;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.19,hg002_chrY_paternal_14.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000029;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000029;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000029:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1122358	.	+	.	source_transcript=hg002_chrY_paternal_14.19;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.19,hg002_chrY_paternal_14.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000029;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000029;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000029:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1122359	1122455	.	+	.	source_transcript=hg002_chrY_paternal_14.19;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.19,hg002_chrY_paternal_14.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000029;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000029;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000029:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1122359	1122455	.	+	2	source_transcript=hg002_chrY_paternal_14.19;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.19,hg002_chrY_paternal_14.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000029;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000029;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000029:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1122456	1123881	.	+	.	source_transcript=hg002_chrY_paternal_14.19;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.19,hg002_chrY_paternal_14.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000029;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000029;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000029:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=hg002_chrY_paternal_14.19;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.19,hg002_chrY_paternal_14.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000029;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000029;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000029:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1123882	1123963	.	+	1	source_transcript=hg002_chrY_paternal_14.19;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.19,hg002_chrY_paternal_14.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000029;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000029;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000029:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1128192	.	+	.	source_transcript=hg002_chrY_paternal_14.19;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.19,hg002_chrY_paternal_14.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000029;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000029;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000029:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1128193	1128726	.	+	.	source_transcript=hg002_chrY_paternal_14.19;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.19,hg002_chrY_paternal_14.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000029;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000029;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000029:12;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1128193	1128270	.	+	0	source_transcript=hg002_chrY_paternal_14.19;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.19,hg002_chrY_paternal_14.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000029;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000029;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000029:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1128268	1128270	.	+	0	source_transcript=hg002_chrY_paternal_14.19;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.19,hg002_chrY_paternal_14.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000029;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000029;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000029;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083966	1124377	100	+	.	source_transcript=hg002_chrY_paternal_14.2;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.2,hg002_chrY_paternal_14.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000030;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_G0000009;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=HG003_chrY_T0000030;Name=CSF2RA
HG003_chrY	CAT	exon	1083966	1084031	.	+	.	source_transcript=hg002_chrY_paternal_14.2;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.2,hg002_chrY_paternal_14.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000030;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000030;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000030:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1091734	.	+	.	source_transcript=hg002_chrY_paternal_14.2;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.2,hg002_chrY_paternal_14.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000030;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000030;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000030:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1091735	1091798	.	+	.	source_transcript=hg002_chrY_paternal_14.2;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.2,hg002_chrY_paternal_14.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000030;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000030;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000030:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1091799	1099694	.	+	.	source_transcript=hg002_chrY_paternal_14.2;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.2,hg002_chrY_paternal_14.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000030;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000030;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000030:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=hg002_chrY_paternal_14.2;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.2,hg002_chrY_paternal_14.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000030;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000030;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000030:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=hg002_chrY_paternal_14.2;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.2,hg002_chrY_paternal_14.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000030;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000030;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000030:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=hg002_chrY_paternal_14.2;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.2,hg002_chrY_paternal_14.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000030;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000030;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000030;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=hg002_chrY_paternal_14.2;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.2,hg002_chrY_paternal_14.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000030;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000030;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000030:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=hg002_chrY_paternal_14.2;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.2,hg002_chrY_paternal_14.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000030;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000030;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000030:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=hg002_chrY_paternal_14.2;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.2,hg002_chrY_paternal_14.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000030;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000030;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000030:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=hg002_chrY_paternal_14.2;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.2,hg002_chrY_paternal_14.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000030;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000030;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000030:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=hg002_chrY_paternal_14.2;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.2,hg002_chrY_paternal_14.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000030;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000030;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000030:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=hg002_chrY_paternal_14.2;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.2,hg002_chrY_paternal_14.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000030;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000030;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000030:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=hg002_chrY_paternal_14.2;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.2,hg002_chrY_paternal_14.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000030;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000030;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000030:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=hg002_chrY_paternal_14.2;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.2,hg002_chrY_paternal_14.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000030;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000030;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000030:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=hg002_chrY_paternal_14.2;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.2,hg002_chrY_paternal_14.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000030;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000030;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000030:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=hg002_chrY_paternal_14.2;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.2,hg002_chrY_paternal_14.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000030;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000030;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000030:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=hg002_chrY_paternal_14.2;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.2,hg002_chrY_paternal_14.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000030;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000030;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000030:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=hg002_chrY_paternal_14.2;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.2,hg002_chrY_paternal_14.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000030;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000030;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000030:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=hg002_chrY_paternal_14.2;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.2,hg002_chrY_paternal_14.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000030;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000030;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000030:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=hg002_chrY_paternal_14.2;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.2,hg002_chrY_paternal_14.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000030;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000030;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000030:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111756	.	+	2	source_transcript=hg002_chrY_paternal_14.2;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.2,hg002_chrY_paternal_14.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000030;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000030;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000030:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=hg002_chrY_paternal_14.2;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.2,hg002_chrY_paternal_14.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000030;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000030;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000030:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=hg002_chrY_paternal_14.2;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.2,hg002_chrY_paternal_14.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000030;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000030;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000030:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1112722	1112751	.	+	0	source_transcript=hg002_chrY_paternal_14.2;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.2,hg002_chrY_paternal_14.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000030;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000030;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000030:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=hg002_chrY_paternal_14.2;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.2,hg002_chrY_paternal_14.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000030;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000030;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000030:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=hg002_chrY_paternal_14.2;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.2,hg002_chrY_paternal_14.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000030;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000030;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000030:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1118926	1119061	.	+	0	source_transcript=hg002_chrY_paternal_14.2;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.2,hg002_chrY_paternal_14.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000030;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000030;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000030:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1122358	.	+	.	source_transcript=hg002_chrY_paternal_14.2;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.2,hg002_chrY_paternal_14.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000030;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000030;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000030:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1122359	1122455	.	+	.	source_transcript=hg002_chrY_paternal_14.2;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.2,hg002_chrY_paternal_14.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000030;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000030;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000030:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1122359	1122455	.	+	2	source_transcript=hg002_chrY_paternal_14.2;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.2,hg002_chrY_paternal_14.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000030;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000030;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000030:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1122456	1123881	.	+	.	source_transcript=hg002_chrY_paternal_14.2;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.2,hg002_chrY_paternal_14.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000030;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000030;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000030:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=hg002_chrY_paternal_14.2;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.2,hg002_chrY_paternal_14.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000030;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000030;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000030:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1123882	1123963	.	+	1	source_transcript=hg002_chrY_paternal_14.2;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.2,hg002_chrY_paternal_14.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000030;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000030;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000030:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1124063	.	+	.	source_transcript=hg002_chrY_paternal_14.2;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.2,hg002_chrY_paternal_14.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000030;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000030;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000030:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1124064	1124377	.	+	.	source_transcript=hg002_chrY_paternal_14.2;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.2,hg002_chrY_paternal_14.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000030;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000030;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000030:12;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1124064	1124171	.	+	0	source_transcript=hg002_chrY_paternal_14.2;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.2,hg002_chrY_paternal_14.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000030;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000030;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000030:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1124169	1124171	.	+	0	source_transcript=hg002_chrY_paternal_14.2;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.2,hg002_chrY_paternal_14.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000030;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000030;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000030;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083966	1128726	100	+	.	source_transcript=hg002_chrY_paternal_14.20;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.20;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.20,hg002_chrY_paternal_14.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_G0000009;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=HG003_chrY_T0000031;Name=CSF2RA
HG003_chrY	CAT	exon	1083966	1084031	.	+	.	source_transcript=hg002_chrY_paternal_14.20;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.20,hg002_chrY_paternal_14.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000031;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000031:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1091734	.	+	.	source_transcript=hg002_chrY_paternal_14.20;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.20,hg002_chrY_paternal_14.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000031;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000031:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1091735	1091798	.	+	.	source_transcript=hg002_chrY_paternal_14.20;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.20,hg002_chrY_paternal_14.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000031;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000031:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1091799	1099694	.	+	.	source_transcript=hg002_chrY_paternal_14.20;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.20,hg002_chrY_paternal_14.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000031;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000031:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=hg002_chrY_paternal_14.20;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.20,hg002_chrY_paternal_14.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000031;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000031:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=hg002_chrY_paternal_14.20;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.20,hg002_chrY_paternal_14.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000031;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000031:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=hg002_chrY_paternal_14.20;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.20,hg002_chrY_paternal_14.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000031;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000031;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=hg002_chrY_paternal_14.20;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.20,hg002_chrY_paternal_14.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000031;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000031:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=hg002_chrY_paternal_14.20;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.20,hg002_chrY_paternal_14.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000031;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000031:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=hg002_chrY_paternal_14.20;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.20,hg002_chrY_paternal_14.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000031;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000031:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=hg002_chrY_paternal_14.20;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.20,hg002_chrY_paternal_14.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000031;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000031:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=hg002_chrY_paternal_14.20;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.20,hg002_chrY_paternal_14.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000031;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000031:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=hg002_chrY_paternal_14.20;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.20,hg002_chrY_paternal_14.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000031;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000031:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=hg002_chrY_paternal_14.20;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.20,hg002_chrY_paternal_14.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000031;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000031:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=hg002_chrY_paternal_14.20;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.20,hg002_chrY_paternal_14.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000031;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000031:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=hg002_chrY_paternal_14.20;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.20,hg002_chrY_paternal_14.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000031;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000031:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=hg002_chrY_paternal_14.20;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.20,hg002_chrY_paternal_14.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000031;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000031:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=hg002_chrY_paternal_14.20;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.20,hg002_chrY_paternal_14.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000031;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000031:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=hg002_chrY_paternal_14.20;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.20,hg002_chrY_paternal_14.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000031;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000031:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=hg002_chrY_paternal_14.20;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.20,hg002_chrY_paternal_14.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000031;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000031:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=hg002_chrY_paternal_14.20;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.20,hg002_chrY_paternal_14.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000031;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000031:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111756	.	+	2	source_transcript=hg002_chrY_paternal_14.20;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.20,hg002_chrY_paternal_14.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000031;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000031:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=hg002_chrY_paternal_14.20;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.20,hg002_chrY_paternal_14.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000031;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000031:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=hg002_chrY_paternal_14.20;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.20,hg002_chrY_paternal_14.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000031;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000031:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1112722	1112751	.	+	0	source_transcript=hg002_chrY_paternal_14.20;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.20,hg002_chrY_paternal_14.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000031;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000031:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=hg002_chrY_paternal_14.20;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.20,hg002_chrY_paternal_14.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000031;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000031:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=hg002_chrY_paternal_14.20;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.20,hg002_chrY_paternal_14.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000031;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000031:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1118926	1119061	.	+	0	source_transcript=hg002_chrY_paternal_14.20;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.20,hg002_chrY_paternal_14.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000031;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000031:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1122358	.	+	.	source_transcript=hg002_chrY_paternal_14.20;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.20,hg002_chrY_paternal_14.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000031;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000031:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1122359	1122455	.	+	.	source_transcript=hg002_chrY_paternal_14.20;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.20,hg002_chrY_paternal_14.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000031;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000031:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1122359	1122455	.	+	2	source_transcript=hg002_chrY_paternal_14.20;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.20,hg002_chrY_paternal_14.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000031;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000031:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1122456	1123881	.	+	.	source_transcript=hg002_chrY_paternal_14.20;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.20,hg002_chrY_paternal_14.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000031;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000031:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=hg002_chrY_paternal_14.20;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.20,hg002_chrY_paternal_14.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000031;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000031:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1123882	1123963	.	+	1	source_transcript=hg002_chrY_paternal_14.20;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.20,hg002_chrY_paternal_14.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000031;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000031:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1128192	.	+	.	source_transcript=hg002_chrY_paternal_14.20;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.20,hg002_chrY_paternal_14.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000031;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000031:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1128193	1128726	.	+	.	source_transcript=hg002_chrY_paternal_14.20;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.20,hg002_chrY_paternal_14.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000031;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000031:12;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1128193	1128270	.	+	0	source_transcript=hg002_chrY_paternal_14.20;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.20,hg002_chrY_paternal_14.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000031;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000031:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1128268	1128270	.	+	0	source_transcript=hg002_chrY_paternal_14.20;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.20,hg002_chrY_paternal_14.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000031;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000031;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083966	1141239	100	+	.	source_transcript=hg002_chrY_paternal_14.21;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.21;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.21,hg002_chrY_paternal_14.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000032;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_G0000009;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=HG003_chrY_T0000032;Name=CSF2RA
HG003_chrY	CAT	exon	1083966	1084031	.	+	.	source_transcript=hg002_chrY_paternal_14.21;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.21,hg002_chrY_paternal_14.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000032;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000032;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000032:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1099694	.	+	.	source_transcript=hg002_chrY_paternal_14.21;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.21,hg002_chrY_paternal_14.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000032;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000032;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000032:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=hg002_chrY_paternal_14.21;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.21,hg002_chrY_paternal_14.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000032;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000032;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000032:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=hg002_chrY_paternal_14.21;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.21,hg002_chrY_paternal_14.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000032;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000032;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000032:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=hg002_chrY_paternal_14.21;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.21,hg002_chrY_paternal_14.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000032;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000032;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000032;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=hg002_chrY_paternal_14.21;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.21,hg002_chrY_paternal_14.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000032;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000032;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000032:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=hg002_chrY_paternal_14.21;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.21,hg002_chrY_paternal_14.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000032;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000032;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000032:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=hg002_chrY_paternal_14.21;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.21,hg002_chrY_paternal_14.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000032;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000032;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000032:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=hg002_chrY_paternal_14.21;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.21,hg002_chrY_paternal_14.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000032;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000032;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000032:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=hg002_chrY_paternal_14.21;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.21,hg002_chrY_paternal_14.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000032;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000032;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000032:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=hg002_chrY_paternal_14.21;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.21,hg002_chrY_paternal_14.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000032;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000032;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000032:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=hg002_chrY_paternal_14.21;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.21,hg002_chrY_paternal_14.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000032;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000032;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000032:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=hg002_chrY_paternal_14.21;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.21,hg002_chrY_paternal_14.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000032;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000032;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000032:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=hg002_chrY_paternal_14.21;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.21,hg002_chrY_paternal_14.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000032;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000032;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000032:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=hg002_chrY_paternal_14.21;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.21,hg002_chrY_paternal_14.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000032;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000032;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000032:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=hg002_chrY_paternal_14.21;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.21,hg002_chrY_paternal_14.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000032;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000032;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000032:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=hg002_chrY_paternal_14.21;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.21,hg002_chrY_paternal_14.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000032;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000032;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000032:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=hg002_chrY_paternal_14.21;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.21,hg002_chrY_paternal_14.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000032;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000032;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000032:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=hg002_chrY_paternal_14.21;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.21,hg002_chrY_paternal_14.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000032;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000032;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000032:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111756	.	+	2	source_transcript=hg002_chrY_paternal_14.21;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.21,hg002_chrY_paternal_14.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000032;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000032;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000032:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=hg002_chrY_paternal_14.21;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.21,hg002_chrY_paternal_14.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000032;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000032;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000032:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=hg002_chrY_paternal_14.21;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.21,hg002_chrY_paternal_14.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000032;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000032;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000032:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1112722	1112751	.	+	0	source_transcript=hg002_chrY_paternal_14.21;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.21,hg002_chrY_paternal_14.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000032;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000032;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000032:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=hg002_chrY_paternal_14.21;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.21,hg002_chrY_paternal_14.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000032;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000032;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000032:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=hg002_chrY_paternal_14.21;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.21,hg002_chrY_paternal_14.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000032;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000032;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000032:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1118926	1119061	.	+	0	source_transcript=hg002_chrY_paternal_14.21;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.21,hg002_chrY_paternal_14.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000032;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000032;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000032:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1122358	.	+	.	source_transcript=hg002_chrY_paternal_14.21;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.21,hg002_chrY_paternal_14.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000032;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000032;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000032:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1122359	1122455	.	+	.	source_transcript=hg002_chrY_paternal_14.21;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.21,hg002_chrY_paternal_14.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000032;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000032;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000032:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1122359	1122455	.	+	2	source_transcript=hg002_chrY_paternal_14.21;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.21,hg002_chrY_paternal_14.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000032;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000032;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000032:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1122456	1123881	.	+	.	source_transcript=hg002_chrY_paternal_14.21;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.21,hg002_chrY_paternal_14.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000032;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000032;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000032:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=hg002_chrY_paternal_14.21;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.21,hg002_chrY_paternal_14.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000032;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000032;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000032:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1123882	1123963	.	+	1	source_transcript=hg002_chrY_paternal_14.21;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.21,hg002_chrY_paternal_14.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000032;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000032;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000032:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1141038	.	+	.	source_transcript=hg002_chrY_paternal_14.21;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.21,hg002_chrY_paternal_14.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000032;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000032;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000032:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1141039	1141057	.	+	.	source_transcript=hg002_chrY_paternal_14.21;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.21,hg002_chrY_paternal_14.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000032;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000032;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000032:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1141039	1141057	.	+	0	source_transcript=hg002_chrY_paternal_14.21;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.21,hg002_chrY_paternal_14.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000032;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000032;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000032:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1141058	1141145	.	+	.	source_transcript=hg002_chrY_paternal_14.21;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.21,hg002_chrY_paternal_14.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000032;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000032;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000032:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1141146	1141239	.	+	.	source_transcript=hg002_chrY_paternal_14.21;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.21,hg002_chrY_paternal_14.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000032;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000032;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000032:12;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1141146	1141162	.	+	2	source_transcript=hg002_chrY_paternal_14.21;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.21,hg002_chrY_paternal_14.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000032;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000032;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000032:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1141160	1141162	.	+	0	source_transcript=hg002_chrY_paternal_14.21;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.21,hg002_chrY_paternal_14.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000032;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000032;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000032;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083966	1141416	100	+	.	source_transcript=hg002_chrY_paternal_14.22;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.22;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.22,hg002_chrY_paternal_14.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000033;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_G0000009;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=HG003_chrY_T0000033;Name=CSF2RA
HG003_chrY	CAT	exon	1083966	1084031	.	+	.	source_transcript=hg002_chrY_paternal_14.22;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.22,hg002_chrY_paternal_14.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000033;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000033;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000033:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1099694	.	+	.	source_transcript=hg002_chrY_paternal_14.22;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.22,hg002_chrY_paternal_14.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000033;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000033;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000033:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=hg002_chrY_paternal_14.22;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.22,hg002_chrY_paternal_14.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000033;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000033;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000033:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=hg002_chrY_paternal_14.22;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.22,hg002_chrY_paternal_14.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000033;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000033;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000033:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=hg002_chrY_paternal_14.22;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.22,hg002_chrY_paternal_14.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000033;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000033;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000033;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=hg002_chrY_paternal_14.22;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.22,hg002_chrY_paternal_14.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000033;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000033;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000033:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=hg002_chrY_paternal_14.22;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.22,hg002_chrY_paternal_14.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000033;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000033;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000033:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=hg002_chrY_paternal_14.22;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.22,hg002_chrY_paternal_14.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000033;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000033;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000033:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=hg002_chrY_paternal_14.22;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.22,hg002_chrY_paternal_14.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000033;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000033;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000033:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=hg002_chrY_paternal_14.22;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.22,hg002_chrY_paternal_14.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000033;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000033;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000033:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=hg002_chrY_paternal_14.22;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.22,hg002_chrY_paternal_14.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000033;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000033;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000033:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=hg002_chrY_paternal_14.22;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.22,hg002_chrY_paternal_14.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000033;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000033;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000033:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=hg002_chrY_paternal_14.22;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.22,hg002_chrY_paternal_14.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000033;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000033;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000033:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=hg002_chrY_paternal_14.22;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.22,hg002_chrY_paternal_14.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000033;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000033;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000033:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=hg002_chrY_paternal_14.22;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.22,hg002_chrY_paternal_14.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000033;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000033;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000033:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=hg002_chrY_paternal_14.22;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.22,hg002_chrY_paternal_14.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000033;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000033;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000033:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=hg002_chrY_paternal_14.22;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.22,hg002_chrY_paternal_14.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000033;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000033;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000033:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=hg002_chrY_paternal_14.22;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.22,hg002_chrY_paternal_14.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000033;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000033;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000033:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=hg002_chrY_paternal_14.22;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.22,hg002_chrY_paternal_14.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000033;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000033;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000033:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111756	.	+	2	source_transcript=hg002_chrY_paternal_14.22;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.22,hg002_chrY_paternal_14.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000033;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000033;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000033:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=hg002_chrY_paternal_14.22;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.22,hg002_chrY_paternal_14.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000033;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000033;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000033:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=hg002_chrY_paternal_14.22;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.22,hg002_chrY_paternal_14.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000033;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000033;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000033:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1112722	1112751	.	+	0	source_transcript=hg002_chrY_paternal_14.22;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.22,hg002_chrY_paternal_14.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000033;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000033;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000033:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=hg002_chrY_paternal_14.22;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.22,hg002_chrY_paternal_14.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000033;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000033;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000033:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=hg002_chrY_paternal_14.22;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.22,hg002_chrY_paternal_14.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000033;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000033;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000033:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1118926	1119061	.	+	0	source_transcript=hg002_chrY_paternal_14.22;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.22,hg002_chrY_paternal_14.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000033;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000033;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000033:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1122358	.	+	.	source_transcript=hg002_chrY_paternal_14.22;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.22,hg002_chrY_paternal_14.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000033;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000033;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000033:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1122359	1122455	.	+	.	source_transcript=hg002_chrY_paternal_14.22;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.22,hg002_chrY_paternal_14.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000033;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000033;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000033:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1122359	1122455	.	+	2	source_transcript=hg002_chrY_paternal_14.22;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.22,hg002_chrY_paternal_14.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000033;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000033;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000033:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1122456	1123881	.	+	.	source_transcript=hg002_chrY_paternal_14.22;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.22,hg002_chrY_paternal_14.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000033;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000033;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000033:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=hg002_chrY_paternal_14.22;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.22,hg002_chrY_paternal_14.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000033;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000033;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000033:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1123882	1123963	.	+	1	source_transcript=hg002_chrY_paternal_14.22;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.22,hg002_chrY_paternal_14.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000033;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000033;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000033:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1141034	.	+	.	source_transcript=hg002_chrY_paternal_14.22;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.22,hg002_chrY_paternal_14.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000033;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000033;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000033:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1141035	1141057	.	+	.	source_transcript=hg002_chrY_paternal_14.22;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.22,hg002_chrY_paternal_14.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000033;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000033;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000033:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1141035	1141057	.	+	0	source_transcript=hg002_chrY_paternal_14.22;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.22,hg002_chrY_paternal_14.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000033;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000033;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000033:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1141058	1141145	.	+	.	source_transcript=hg002_chrY_paternal_14.22;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.22,hg002_chrY_paternal_14.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000033;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000033;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000033:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1141146	1141416	.	+	.	source_transcript=hg002_chrY_paternal_14.22;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.22,hg002_chrY_paternal_14.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000033;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000033;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000033:12;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1141146	1141284	.	+	1	source_transcript=hg002_chrY_paternal_14.22;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.22,hg002_chrY_paternal_14.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000033;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000033;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000033:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1141282	1141284	.	+	0	source_transcript=hg002_chrY_paternal_14.22;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.22,hg002_chrY_paternal_14.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000033;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000033;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000033;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083966	1141416	100	+	.	source_transcript=hg002_chrY_paternal_14.23;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.23;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.23,hg002_chrY_paternal_14.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000034;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_G0000009;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=HG003_chrY_T0000034;Name=CSF2RA
HG003_chrY	CAT	exon	1083966	1084031	.	+	.	source_transcript=hg002_chrY_paternal_14.23;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.23,hg002_chrY_paternal_14.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000034;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000034;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000034:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1091734	.	+	.	source_transcript=hg002_chrY_paternal_14.23;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.23,hg002_chrY_paternal_14.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000034;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000034;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000034:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1091735	1091822	.	+	.	source_transcript=hg002_chrY_paternal_14.23;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.23,hg002_chrY_paternal_14.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000034;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000034;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000034:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1091823	1099694	.	+	.	source_transcript=hg002_chrY_paternal_14.23;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.23,hg002_chrY_paternal_14.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000034;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000034;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000034:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=hg002_chrY_paternal_14.23;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.23,hg002_chrY_paternal_14.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000034;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000034;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000034:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=hg002_chrY_paternal_14.23;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.23,hg002_chrY_paternal_14.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000034;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000034;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000034:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=hg002_chrY_paternal_14.23;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.23,hg002_chrY_paternal_14.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000034;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000034;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000034;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=hg002_chrY_paternal_14.23;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.23,hg002_chrY_paternal_14.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000034;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000034;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000034:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=hg002_chrY_paternal_14.23;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.23,hg002_chrY_paternal_14.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000034;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000034;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000034:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=hg002_chrY_paternal_14.23;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.23,hg002_chrY_paternal_14.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000034;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000034;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000034:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=hg002_chrY_paternal_14.23;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.23,hg002_chrY_paternal_14.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000034;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000034;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000034:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=hg002_chrY_paternal_14.23;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.23,hg002_chrY_paternal_14.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000034;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000034;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000034:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=hg002_chrY_paternal_14.23;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.23,hg002_chrY_paternal_14.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000034;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000034;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000034:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=hg002_chrY_paternal_14.23;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.23,hg002_chrY_paternal_14.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000034;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000034;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000034:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=hg002_chrY_paternal_14.23;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.23,hg002_chrY_paternal_14.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000034;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000034;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000034:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=hg002_chrY_paternal_14.23;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.23,hg002_chrY_paternal_14.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000034;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000034;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000034:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=hg002_chrY_paternal_14.23;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.23,hg002_chrY_paternal_14.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000034;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000034;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000034:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=hg002_chrY_paternal_14.23;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.23,hg002_chrY_paternal_14.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000034;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000034;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000034:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=hg002_chrY_paternal_14.23;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.23,hg002_chrY_paternal_14.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000034;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000034;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000034:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=hg002_chrY_paternal_14.23;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.23,hg002_chrY_paternal_14.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000034;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000034;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000034:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=hg002_chrY_paternal_14.23;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.23,hg002_chrY_paternal_14.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000034;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000034;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000034:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111756	.	+	2	source_transcript=hg002_chrY_paternal_14.23;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.23,hg002_chrY_paternal_14.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000034;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000034;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000034:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=hg002_chrY_paternal_14.23;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.23,hg002_chrY_paternal_14.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000034;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000034;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000034:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=hg002_chrY_paternal_14.23;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.23,hg002_chrY_paternal_14.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000034;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000034;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000034:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1112722	1112751	.	+	0	source_transcript=hg002_chrY_paternal_14.23;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.23,hg002_chrY_paternal_14.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000034;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000034;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000034:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=hg002_chrY_paternal_14.23;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.23,hg002_chrY_paternal_14.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000034;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000034;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000034:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=hg002_chrY_paternal_14.23;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.23,hg002_chrY_paternal_14.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000034;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000034;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000034:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1118926	1119061	.	+	0	source_transcript=hg002_chrY_paternal_14.23;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.23,hg002_chrY_paternal_14.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000034;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000034;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000034:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1122358	.	+	.	source_transcript=hg002_chrY_paternal_14.23;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.23,hg002_chrY_paternal_14.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000034;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000034;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000034:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1122359	1122455	.	+	.	source_transcript=hg002_chrY_paternal_14.23;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.23,hg002_chrY_paternal_14.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000034;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000034;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000034:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1122359	1122455	.	+	2	source_transcript=hg002_chrY_paternal_14.23;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.23,hg002_chrY_paternal_14.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000034;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000034;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000034:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1122456	1123881	.	+	.	source_transcript=hg002_chrY_paternal_14.23;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.23,hg002_chrY_paternal_14.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000034;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000034;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000034:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=hg002_chrY_paternal_14.23;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.23,hg002_chrY_paternal_14.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000034;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000034;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000034:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1123882	1123963	.	+	1	source_transcript=hg002_chrY_paternal_14.23;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.23,hg002_chrY_paternal_14.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000034;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000034;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000034:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1141034	.	+	.	source_transcript=hg002_chrY_paternal_14.23;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.23,hg002_chrY_paternal_14.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000034;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000034;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000034:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1141035	1141057	.	+	.	source_transcript=hg002_chrY_paternal_14.23;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.23,hg002_chrY_paternal_14.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000034;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000034;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000034:12;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1141035	1141057	.	+	0	source_transcript=hg002_chrY_paternal_14.23;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.23,hg002_chrY_paternal_14.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000034;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000034;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000034:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1141058	1141145	.	+	.	source_transcript=hg002_chrY_paternal_14.23;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.23,hg002_chrY_paternal_14.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000034;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000034;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000034:12;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1141146	1141416	.	+	.	source_transcript=hg002_chrY_paternal_14.23;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.23,hg002_chrY_paternal_14.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000034;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000034;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000034:13;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1141146	1141284	.	+	1	source_transcript=hg002_chrY_paternal_14.23;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.23,hg002_chrY_paternal_14.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000034;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000034;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000034:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1141282	1141284	.	+	0	source_transcript=hg002_chrY_paternal_14.23;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.23,hg002_chrY_paternal_14.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000034;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000034;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000034;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083966	1141416	100	+	.	source_transcript=hg002_chrY_paternal_14.24;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.24;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.24,hg002_chrY_paternal_14.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_G0000009;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=HG003_chrY_T0000035;Name=CSF2RA
HG003_chrY	CAT	exon	1083966	1084031	.	+	.	source_transcript=hg002_chrY_paternal_14.24;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.24,hg002_chrY_paternal_14.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000035;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000035:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1091734	.	+	.	source_transcript=hg002_chrY_paternal_14.24;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.24,hg002_chrY_paternal_14.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000035;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000035:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1091735	1091798	.	+	.	source_transcript=hg002_chrY_paternal_14.24;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.24,hg002_chrY_paternal_14.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000035;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000035:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1091799	1099694	.	+	.	source_transcript=hg002_chrY_paternal_14.24;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.24,hg002_chrY_paternal_14.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000035;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000035:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=hg002_chrY_paternal_14.24;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.24,hg002_chrY_paternal_14.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000035;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000035:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=hg002_chrY_paternal_14.24;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.24,hg002_chrY_paternal_14.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000035;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000035:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=hg002_chrY_paternal_14.24;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.24,hg002_chrY_paternal_14.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000035;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000035;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=hg002_chrY_paternal_14.24;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.24,hg002_chrY_paternal_14.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000035;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000035:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=hg002_chrY_paternal_14.24;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.24,hg002_chrY_paternal_14.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000035;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000035:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=hg002_chrY_paternal_14.24;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.24,hg002_chrY_paternal_14.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000035;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000035:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=hg002_chrY_paternal_14.24;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.24,hg002_chrY_paternal_14.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000035;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000035:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=hg002_chrY_paternal_14.24;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.24,hg002_chrY_paternal_14.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000035;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000035:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=hg002_chrY_paternal_14.24;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.24,hg002_chrY_paternal_14.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000035;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000035:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=hg002_chrY_paternal_14.24;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.24,hg002_chrY_paternal_14.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000035;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000035:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=hg002_chrY_paternal_14.24;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.24,hg002_chrY_paternal_14.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000035;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000035:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=hg002_chrY_paternal_14.24;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.24,hg002_chrY_paternal_14.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000035;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000035:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=hg002_chrY_paternal_14.24;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.24,hg002_chrY_paternal_14.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000035;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000035:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=hg002_chrY_paternal_14.24;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.24,hg002_chrY_paternal_14.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000035;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000035:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=hg002_chrY_paternal_14.24;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.24,hg002_chrY_paternal_14.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000035;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000035:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=hg002_chrY_paternal_14.24;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.24,hg002_chrY_paternal_14.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000035;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000035:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=hg002_chrY_paternal_14.24;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.24,hg002_chrY_paternal_14.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000035;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000035:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111756	.	+	2	source_transcript=hg002_chrY_paternal_14.24;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.24,hg002_chrY_paternal_14.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000035;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000035:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=hg002_chrY_paternal_14.24;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.24,hg002_chrY_paternal_14.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000035;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000035:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=hg002_chrY_paternal_14.24;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.24,hg002_chrY_paternal_14.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000035;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000035:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1112722	1112751	.	+	0	source_transcript=hg002_chrY_paternal_14.24;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.24,hg002_chrY_paternal_14.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000035;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000035:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=hg002_chrY_paternal_14.24;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.24,hg002_chrY_paternal_14.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000035;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000035:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=hg002_chrY_paternal_14.24;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.24,hg002_chrY_paternal_14.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000035;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000035:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1118926	1119061	.	+	0	source_transcript=hg002_chrY_paternal_14.24;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.24,hg002_chrY_paternal_14.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000035;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000035:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1122358	.	+	.	source_transcript=hg002_chrY_paternal_14.24;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.24,hg002_chrY_paternal_14.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000035;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000035:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1122359	1122455	.	+	.	source_transcript=hg002_chrY_paternal_14.24;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.24,hg002_chrY_paternal_14.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000035;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000035:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1122359	1122455	.	+	2	source_transcript=hg002_chrY_paternal_14.24;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.24,hg002_chrY_paternal_14.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000035;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000035:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1122456	1123881	.	+	.	source_transcript=hg002_chrY_paternal_14.24;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.24,hg002_chrY_paternal_14.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000035;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000035:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=hg002_chrY_paternal_14.24;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.24,hg002_chrY_paternal_14.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000035;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000035:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1123882	1123963	.	+	1	source_transcript=hg002_chrY_paternal_14.24;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.24,hg002_chrY_paternal_14.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000035;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000035:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1141034	.	+	.	source_transcript=hg002_chrY_paternal_14.24;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.24,hg002_chrY_paternal_14.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000035;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000035:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1141035	1141057	.	+	.	source_transcript=hg002_chrY_paternal_14.24;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.24,hg002_chrY_paternal_14.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000035;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000035:12;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1141035	1141057	.	+	0	source_transcript=hg002_chrY_paternal_14.24;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.24,hg002_chrY_paternal_14.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000035;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000035:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1141058	1141145	.	+	.	source_transcript=hg002_chrY_paternal_14.24;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.24,hg002_chrY_paternal_14.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000035;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000035:12;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1141146	1141416	.	+	.	source_transcript=hg002_chrY_paternal_14.24;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.24,hg002_chrY_paternal_14.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000035;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000035:13;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1141146	1141284	.	+	1	source_transcript=hg002_chrY_paternal_14.24;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.24,hg002_chrY_paternal_14.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000035;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000035:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1141282	1141284	.	+	0	source_transcript=hg002_chrY_paternal_14.24;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.24,hg002_chrY_paternal_14.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000035;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000035;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083966	1141698	100	+	.	source_transcript=hg002_chrY_paternal_14.25;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.25;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.25,hg002_chrY_paternal_14.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_G0000009;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=HG003_chrY_T0000036;Name=CSF2RA
HG003_chrY	CAT	exon	1083966	1084031	.	+	.	source_transcript=hg002_chrY_paternal_14.25;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.25,hg002_chrY_paternal_14.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000036;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000036:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1091734	.	+	.	source_transcript=hg002_chrY_paternal_14.25;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.25,hg002_chrY_paternal_14.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000036;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000036:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1091735	1091798	.	+	.	source_transcript=hg002_chrY_paternal_14.25;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.25,hg002_chrY_paternal_14.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000036;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000036:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1091799	1099694	.	+	.	source_transcript=hg002_chrY_paternal_14.25;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.25,hg002_chrY_paternal_14.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000036;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000036:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=hg002_chrY_paternal_14.25;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.25,hg002_chrY_paternal_14.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000036;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000036:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=hg002_chrY_paternal_14.25;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.25,hg002_chrY_paternal_14.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000036;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000036:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=hg002_chrY_paternal_14.25;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.25,hg002_chrY_paternal_14.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000036;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000036;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=hg002_chrY_paternal_14.25;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.25,hg002_chrY_paternal_14.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000036;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000036:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=hg002_chrY_paternal_14.25;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.25,hg002_chrY_paternal_14.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000036;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000036:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=hg002_chrY_paternal_14.25;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.25,hg002_chrY_paternal_14.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000036;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000036:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=hg002_chrY_paternal_14.25;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.25,hg002_chrY_paternal_14.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000036;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000036:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=hg002_chrY_paternal_14.25;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.25,hg002_chrY_paternal_14.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000036;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000036:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=hg002_chrY_paternal_14.25;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.25,hg002_chrY_paternal_14.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000036;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000036:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=hg002_chrY_paternal_14.25;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.25,hg002_chrY_paternal_14.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000036;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000036:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=hg002_chrY_paternal_14.25;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.25,hg002_chrY_paternal_14.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000036;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000036:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=hg002_chrY_paternal_14.25;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.25,hg002_chrY_paternal_14.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000036;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000036:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=hg002_chrY_paternal_14.25;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.25,hg002_chrY_paternal_14.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000036;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000036:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=hg002_chrY_paternal_14.25;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.25,hg002_chrY_paternal_14.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000036;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000036:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=hg002_chrY_paternal_14.25;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.25,hg002_chrY_paternal_14.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000036;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000036:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=hg002_chrY_paternal_14.25;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.25,hg002_chrY_paternal_14.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000036;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000036:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=hg002_chrY_paternal_14.25;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.25,hg002_chrY_paternal_14.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000036;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000036:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111756	.	+	2	source_transcript=hg002_chrY_paternal_14.25;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.25,hg002_chrY_paternal_14.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000036;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000036:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=hg002_chrY_paternal_14.25;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.25,hg002_chrY_paternal_14.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000036;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000036:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=hg002_chrY_paternal_14.25;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.25,hg002_chrY_paternal_14.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000036;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000036:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1112722	1112751	.	+	0	source_transcript=hg002_chrY_paternal_14.25;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.25,hg002_chrY_paternal_14.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000036;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000036:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=hg002_chrY_paternal_14.25;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.25,hg002_chrY_paternal_14.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000036;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000036:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=hg002_chrY_paternal_14.25;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.25,hg002_chrY_paternal_14.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000036;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000036:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1118926	1119061	.	+	0	source_transcript=hg002_chrY_paternal_14.25;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.25,hg002_chrY_paternal_14.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000036;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000036:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1122358	.	+	.	source_transcript=hg002_chrY_paternal_14.25;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.25,hg002_chrY_paternal_14.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000036;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000036:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1122359	1122455	.	+	.	source_transcript=hg002_chrY_paternal_14.25;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.25,hg002_chrY_paternal_14.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000036;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000036:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1122359	1122455	.	+	2	source_transcript=hg002_chrY_paternal_14.25;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.25,hg002_chrY_paternal_14.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000036;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000036:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1122456	1123881	.	+	.	source_transcript=hg002_chrY_paternal_14.25;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.25,hg002_chrY_paternal_14.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000036;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000036:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=hg002_chrY_paternal_14.25;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.25,hg002_chrY_paternal_14.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000036;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000036:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1123882	1123963	.	+	1	source_transcript=hg002_chrY_paternal_14.25;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.25,hg002_chrY_paternal_14.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000036;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000036:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1141038	.	+	.	source_transcript=hg002_chrY_paternal_14.25;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.25,hg002_chrY_paternal_14.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000036;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000036:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1141039	1141698	.	+	.	source_transcript=hg002_chrY_paternal_14.25;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.25,hg002_chrY_paternal_14.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000036;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000036:12;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1141039	1141083	.	+	0	source_transcript=hg002_chrY_paternal_14.25;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.25,hg002_chrY_paternal_14.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000036;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000036:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1141081	1141083	.	+	0	source_transcript=hg002_chrY_paternal_14.25;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.25,hg002_chrY_paternal_14.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000036;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000036;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083966	1141698	100	+	.	source_transcript=hg002_chrY_paternal_14.26;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.26;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.26,hg002_chrY_paternal_14.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000037;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_G0000009;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=HG003_chrY_T0000037;Name=CSF2RA
HG003_chrY	CAT	exon	1083966	1084031	.	+	.	source_transcript=hg002_chrY_paternal_14.26;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.26,hg002_chrY_paternal_14.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000037;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000037;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000037:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1091734	.	+	.	source_transcript=hg002_chrY_paternal_14.26;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.26,hg002_chrY_paternal_14.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000037;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000037;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000037:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1091735	1091822	.	+	.	source_transcript=hg002_chrY_paternal_14.26;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.26,hg002_chrY_paternal_14.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000037;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000037;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000037:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1091823	1099694	.	+	.	source_transcript=hg002_chrY_paternal_14.26;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.26,hg002_chrY_paternal_14.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000037;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000037;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000037:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=hg002_chrY_paternal_14.26;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.26,hg002_chrY_paternal_14.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000037;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000037;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000037:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=hg002_chrY_paternal_14.26;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.26,hg002_chrY_paternal_14.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000037;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000037;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000037:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=hg002_chrY_paternal_14.26;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.26,hg002_chrY_paternal_14.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000037;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000037;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000037;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=hg002_chrY_paternal_14.26;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.26,hg002_chrY_paternal_14.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000037;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000037;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000037:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=hg002_chrY_paternal_14.26;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.26,hg002_chrY_paternal_14.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000037;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000037;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000037:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=hg002_chrY_paternal_14.26;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.26,hg002_chrY_paternal_14.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000037;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000037;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000037:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=hg002_chrY_paternal_14.26;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.26,hg002_chrY_paternal_14.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000037;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000037;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000037:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=hg002_chrY_paternal_14.26;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.26,hg002_chrY_paternal_14.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000037;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000037;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000037:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=hg002_chrY_paternal_14.26;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.26,hg002_chrY_paternal_14.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000037;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000037;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000037:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=hg002_chrY_paternal_14.26;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.26,hg002_chrY_paternal_14.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000037;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000037;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000037:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=hg002_chrY_paternal_14.26;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.26,hg002_chrY_paternal_14.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000037;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000037;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000037:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=hg002_chrY_paternal_14.26;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.26,hg002_chrY_paternal_14.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000037;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000037;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000037:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=hg002_chrY_paternal_14.26;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.26,hg002_chrY_paternal_14.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000037;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000037;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000037:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=hg002_chrY_paternal_14.26;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.26,hg002_chrY_paternal_14.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000037;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000037;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000037:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=hg002_chrY_paternal_14.26;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.26,hg002_chrY_paternal_14.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000037;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000037;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000037:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=hg002_chrY_paternal_14.26;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.26,hg002_chrY_paternal_14.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000037;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000037;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000037:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=hg002_chrY_paternal_14.26;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.26,hg002_chrY_paternal_14.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000037;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000037;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000037:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111756	.	+	2	source_transcript=hg002_chrY_paternal_14.26;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.26,hg002_chrY_paternal_14.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000037;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000037;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000037:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=hg002_chrY_paternal_14.26;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.26,hg002_chrY_paternal_14.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000037;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000037;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000037:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=hg002_chrY_paternal_14.26;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.26,hg002_chrY_paternal_14.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000037;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000037;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000037:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1112722	1112751	.	+	0	source_transcript=hg002_chrY_paternal_14.26;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.26,hg002_chrY_paternal_14.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000037;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000037;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000037:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=hg002_chrY_paternal_14.26;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.26,hg002_chrY_paternal_14.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000037;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000037;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000037:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=hg002_chrY_paternal_14.26;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.26,hg002_chrY_paternal_14.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000037;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000037;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000037:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1118926	1119061	.	+	0	source_transcript=hg002_chrY_paternal_14.26;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.26,hg002_chrY_paternal_14.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000037;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000037;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000037:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1122358	.	+	.	source_transcript=hg002_chrY_paternal_14.26;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.26,hg002_chrY_paternal_14.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000037;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000037;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000037:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1122359	1122455	.	+	.	source_transcript=hg002_chrY_paternal_14.26;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.26,hg002_chrY_paternal_14.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000037;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000037;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000037:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1122359	1122455	.	+	2	source_transcript=hg002_chrY_paternal_14.26;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.26,hg002_chrY_paternal_14.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000037;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000037;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000037:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1122456	1123881	.	+	.	source_transcript=hg002_chrY_paternal_14.26;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.26,hg002_chrY_paternal_14.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000037;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000037;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000037:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=hg002_chrY_paternal_14.26;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.26,hg002_chrY_paternal_14.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000037;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000037;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000037:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1123882	1123963	.	+	1	source_transcript=hg002_chrY_paternal_14.26;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.26,hg002_chrY_paternal_14.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000037;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000037;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000037:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1141034	.	+	.	source_transcript=hg002_chrY_paternal_14.26;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.26,hg002_chrY_paternal_14.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000037;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000037;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000037:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1141035	1141698	.	+	.	source_transcript=hg002_chrY_paternal_14.26;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.26,hg002_chrY_paternal_14.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000037;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000037;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000037:12;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1141035	1141061	.	+	0	source_transcript=hg002_chrY_paternal_14.26;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.26,hg002_chrY_paternal_14.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000037;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000037;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000037:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1141059	1141061	.	+	0	source_transcript=hg002_chrY_paternal_14.26;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.26,hg002_chrY_paternal_14.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000037;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000037;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000037;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083966	1141698	100	+	.	source_transcript=hg002_chrY_paternal_14.27;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.27;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.27;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.27,hg002_chrY_paternal_14.27;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000038;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_G0000009;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=HG003_chrY_T0000038;Name=CSF2RA
HG003_chrY	CAT	exon	1083966	1084031	.	+	.	source_transcript=hg002_chrY_paternal_14.27;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.27;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.27;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.27,hg002_chrY_paternal_14.27;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000038;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000038;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000038:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1091734	.	+	.	source_transcript=hg002_chrY_paternal_14.27;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.27;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.27;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.27,hg002_chrY_paternal_14.27;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000038;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000038;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000038:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1091735	1091798	.	+	.	source_transcript=hg002_chrY_paternal_14.27;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.27;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.27;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.27,hg002_chrY_paternal_14.27;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000038;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000038;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000038:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1091799	1099694	.	+	.	source_transcript=hg002_chrY_paternal_14.27;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.27;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.27;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.27,hg002_chrY_paternal_14.27;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000038;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000038;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000038:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=hg002_chrY_paternal_14.27;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.27;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.27;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.27,hg002_chrY_paternal_14.27;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000038;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000038;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000038:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=hg002_chrY_paternal_14.27;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.27;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.27;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.27,hg002_chrY_paternal_14.27;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000038;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000038;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000038:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=hg002_chrY_paternal_14.27;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.27;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.27;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.27,hg002_chrY_paternal_14.27;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000038;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000038;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000038;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=hg002_chrY_paternal_14.27;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.27;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.27;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.27,hg002_chrY_paternal_14.27;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000038;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000038;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000038:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=hg002_chrY_paternal_14.27;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.27;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.27;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.27,hg002_chrY_paternal_14.27;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000038;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000038;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000038:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=hg002_chrY_paternal_14.27;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.27;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.27;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.27,hg002_chrY_paternal_14.27;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000038;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000038;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000038:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=hg002_chrY_paternal_14.27;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.27;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.27;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.27,hg002_chrY_paternal_14.27;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000038;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000038;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000038:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=hg002_chrY_paternal_14.27;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.27;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.27;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.27,hg002_chrY_paternal_14.27;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000038;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000038;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000038:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=hg002_chrY_paternal_14.27;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.27;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.27;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.27,hg002_chrY_paternal_14.27;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000038;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000038;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000038:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=hg002_chrY_paternal_14.27;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.27;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.27;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.27,hg002_chrY_paternal_14.27;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000038;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000038;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000038:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=hg002_chrY_paternal_14.27;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.27;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.27;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.27,hg002_chrY_paternal_14.27;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000038;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000038;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000038:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=hg002_chrY_paternal_14.27;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.27;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.27;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.27,hg002_chrY_paternal_14.27;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000038;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000038;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000038:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=hg002_chrY_paternal_14.27;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.27;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.27;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.27,hg002_chrY_paternal_14.27;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000038;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000038;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000038:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=hg002_chrY_paternal_14.27;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.27;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.27;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.27,hg002_chrY_paternal_14.27;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000038;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000038;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000038:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=hg002_chrY_paternal_14.27;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.27;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.27;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.27,hg002_chrY_paternal_14.27;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000038;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000038;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000038:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=hg002_chrY_paternal_14.27;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.27;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.27;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.27,hg002_chrY_paternal_14.27;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000038;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000038;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000038:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=hg002_chrY_paternal_14.27;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.27;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.27;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.27,hg002_chrY_paternal_14.27;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000038;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000038;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000038:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111756	.	+	2	source_transcript=hg002_chrY_paternal_14.27;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.27;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.27;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.27,hg002_chrY_paternal_14.27;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000038;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000038;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000038:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=hg002_chrY_paternal_14.27;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.27;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.27;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.27,hg002_chrY_paternal_14.27;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000038;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000038;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000038:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=hg002_chrY_paternal_14.27;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.27;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.27;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.27,hg002_chrY_paternal_14.27;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000038;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000038;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000038:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1112722	1112751	.	+	0	source_transcript=hg002_chrY_paternal_14.27;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.27;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.27;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.27,hg002_chrY_paternal_14.27;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000038;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000038;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000038:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=hg002_chrY_paternal_14.27;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.27;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.27;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.27,hg002_chrY_paternal_14.27;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000038;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000038;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000038:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=hg002_chrY_paternal_14.27;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.27;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.27;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.27,hg002_chrY_paternal_14.27;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000038;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000038;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000038:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1118926	1119061	.	+	0	source_transcript=hg002_chrY_paternal_14.27;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.27;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.27;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.27,hg002_chrY_paternal_14.27;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000038;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000038;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000038:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1122358	.	+	.	source_transcript=hg002_chrY_paternal_14.27;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.27;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.27;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.27,hg002_chrY_paternal_14.27;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000038;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000038;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000038:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1122359	1122455	.	+	.	source_transcript=hg002_chrY_paternal_14.27;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.27;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.27;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.27,hg002_chrY_paternal_14.27;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000038;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000038;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000038:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1122359	1122455	.	+	2	source_transcript=hg002_chrY_paternal_14.27;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.27;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.27;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.27,hg002_chrY_paternal_14.27;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000038;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000038;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000038:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1122456	1123881	.	+	.	source_transcript=hg002_chrY_paternal_14.27;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.27;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.27;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.27,hg002_chrY_paternal_14.27;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000038;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000038;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000038:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=hg002_chrY_paternal_14.27;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.27;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.27;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.27,hg002_chrY_paternal_14.27;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000038;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000038;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000038:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1123882	1123963	.	+	1	source_transcript=hg002_chrY_paternal_14.27;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.27;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.27;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.27,hg002_chrY_paternal_14.27;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000038;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000038;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000038:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1141034	.	+	.	source_transcript=hg002_chrY_paternal_14.27;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.27;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.27;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.27,hg002_chrY_paternal_14.27;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000038;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000038;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000038:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1141035	1141698	.	+	.	source_transcript=hg002_chrY_paternal_14.27;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.27;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.27;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.27,hg002_chrY_paternal_14.27;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000038;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000038;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000038:12;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1141035	1141061	.	+	0	source_transcript=hg002_chrY_paternal_14.27;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.27;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.27;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.27,hg002_chrY_paternal_14.27;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000038;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000038;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000038:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1141059	1141061	.	+	0	source_transcript=hg002_chrY_paternal_14.27;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.27;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.27;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.27,hg002_chrY_paternal_14.27;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000038;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000038;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000038;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083966	1141698	100	+	.	source_transcript=hg002_chrY_paternal_14.28;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.28;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.28;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.28,hg002_chrY_paternal_14.28;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000039;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_G0000009;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=HG003_chrY_T0000039;Name=CSF2RA
HG003_chrY	CAT	exon	1083966	1084031	.	+	.	source_transcript=hg002_chrY_paternal_14.28;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.28;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.28;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.28,hg002_chrY_paternal_14.28;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000039;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000039;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000039:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1099694	.	+	.	source_transcript=hg002_chrY_paternal_14.28;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.28;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.28;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.28,hg002_chrY_paternal_14.28;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000039;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000039;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000039:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=hg002_chrY_paternal_14.28;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.28;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.28;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.28,hg002_chrY_paternal_14.28;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000039;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000039;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000039:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=hg002_chrY_paternal_14.28;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.28;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.28;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.28,hg002_chrY_paternal_14.28;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000039;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000039;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000039:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=hg002_chrY_paternal_14.28;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.28;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.28;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.28,hg002_chrY_paternal_14.28;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000039;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000039;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000039;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=hg002_chrY_paternal_14.28;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.28;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.28;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.28,hg002_chrY_paternal_14.28;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000039;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000039;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000039:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=hg002_chrY_paternal_14.28;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.28;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.28;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.28,hg002_chrY_paternal_14.28;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000039;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000039;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000039:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=hg002_chrY_paternal_14.28;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.28;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.28;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.28,hg002_chrY_paternal_14.28;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000039;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000039;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000039:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=hg002_chrY_paternal_14.28;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.28;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.28;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.28,hg002_chrY_paternal_14.28;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000039;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000039;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000039:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=hg002_chrY_paternal_14.28;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.28;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.28;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.28,hg002_chrY_paternal_14.28;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000039;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000039;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000039:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=hg002_chrY_paternal_14.28;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.28;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.28;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.28,hg002_chrY_paternal_14.28;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000039;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000039;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000039:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=hg002_chrY_paternal_14.28;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.28;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.28;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.28,hg002_chrY_paternal_14.28;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000039;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000039;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000039:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=hg002_chrY_paternal_14.28;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.28;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.28;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.28,hg002_chrY_paternal_14.28;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000039;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000039;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000039:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=hg002_chrY_paternal_14.28;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.28;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.28;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.28,hg002_chrY_paternal_14.28;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000039;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000039;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000039:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=hg002_chrY_paternal_14.28;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.28;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.28;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.28,hg002_chrY_paternal_14.28;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000039;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000039;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000039:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=hg002_chrY_paternal_14.28;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.28;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.28;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.28,hg002_chrY_paternal_14.28;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000039;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000039;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000039:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=hg002_chrY_paternal_14.28;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.28;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.28;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.28,hg002_chrY_paternal_14.28;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000039;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000039;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000039:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=hg002_chrY_paternal_14.28;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.28;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.28;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.28,hg002_chrY_paternal_14.28;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000039;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000039;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000039:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=hg002_chrY_paternal_14.28;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.28;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.28;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.28,hg002_chrY_paternal_14.28;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000039;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000039;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000039:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111756	.	+	2	source_transcript=hg002_chrY_paternal_14.28;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.28;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.28;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.28,hg002_chrY_paternal_14.28;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000039;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000039;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000039:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=hg002_chrY_paternal_14.28;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.28;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.28;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.28,hg002_chrY_paternal_14.28;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000039;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000039;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000039:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=hg002_chrY_paternal_14.28;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.28;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.28;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.28,hg002_chrY_paternal_14.28;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000039;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000039;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000039:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1112722	1112751	.	+	0	source_transcript=hg002_chrY_paternal_14.28;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.28;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.28;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.28,hg002_chrY_paternal_14.28;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000039;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000039;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000039:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=hg002_chrY_paternal_14.28;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.28;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.28;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.28,hg002_chrY_paternal_14.28;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000039;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000039;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000039:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=hg002_chrY_paternal_14.28;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.28;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.28;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.28,hg002_chrY_paternal_14.28;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000039;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000039;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000039:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1118926	1119061	.	+	0	source_transcript=hg002_chrY_paternal_14.28;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.28;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.28;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.28,hg002_chrY_paternal_14.28;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000039;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000039;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000039:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1122358	.	+	.	source_transcript=hg002_chrY_paternal_14.28;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.28;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.28;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.28,hg002_chrY_paternal_14.28;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000039;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000039;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000039:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1122359	1122455	.	+	.	source_transcript=hg002_chrY_paternal_14.28;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.28;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.28;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.28,hg002_chrY_paternal_14.28;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000039;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000039;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000039:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1122359	1122455	.	+	2	source_transcript=hg002_chrY_paternal_14.28;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.28;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.28;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.28,hg002_chrY_paternal_14.28;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000039;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000039;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000039:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1122456	1123881	.	+	.	source_transcript=hg002_chrY_paternal_14.28;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.28;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.28;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.28,hg002_chrY_paternal_14.28;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000039;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000039;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000039:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=hg002_chrY_paternal_14.28;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.28;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.28;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.28,hg002_chrY_paternal_14.28;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000039;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000039;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000039:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1123882	1123963	.	+	1	source_transcript=hg002_chrY_paternal_14.28;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.28;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.28;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.28,hg002_chrY_paternal_14.28;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000039;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000039;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000039:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1141038	.	+	.	source_transcript=hg002_chrY_paternal_14.28;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.28;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.28;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.28,hg002_chrY_paternal_14.28;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000039;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000039;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000039:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1141039	1141698	.	+	.	source_transcript=hg002_chrY_paternal_14.28;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.28;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.28;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.28,hg002_chrY_paternal_14.28;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000039;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000039;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000039:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1141039	1141083	.	+	0	source_transcript=hg002_chrY_paternal_14.28;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.28;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.28;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.28,hg002_chrY_paternal_14.28;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000039;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000039;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000039:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1141081	1141083	.	+	0	source_transcript=hg002_chrY_paternal_14.28;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.28;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.28;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.28,hg002_chrY_paternal_14.28;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000039;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000039;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000039;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083966	1141698	100	+	.	source_transcript=hg002_chrY_paternal_14.29;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.29;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.29;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.29,hg002_chrY_paternal_14.29;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000040;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_G0000009;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=HG003_chrY_T0000040;Name=CSF2RA
HG003_chrY	CAT	exon	1083966	1084031	.	+	.	source_transcript=hg002_chrY_paternal_14.29;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.29;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.29;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.29,hg002_chrY_paternal_14.29;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000040;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000040;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000040:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1099694	.	+	.	source_transcript=hg002_chrY_paternal_14.29;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.29;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.29;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.29,hg002_chrY_paternal_14.29;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000040;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000040;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000040:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=hg002_chrY_paternal_14.29;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.29;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.29;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.29,hg002_chrY_paternal_14.29;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000040;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000040;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000040:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=hg002_chrY_paternal_14.29;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.29;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.29;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.29,hg002_chrY_paternal_14.29;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000040;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000040;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000040:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=hg002_chrY_paternal_14.29;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.29;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.29;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.29,hg002_chrY_paternal_14.29;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000040;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000040;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000040;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=hg002_chrY_paternal_14.29;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.29;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.29;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.29,hg002_chrY_paternal_14.29;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000040;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000040;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000040:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=hg002_chrY_paternal_14.29;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.29;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.29;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.29,hg002_chrY_paternal_14.29;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000040;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000040;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000040:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=hg002_chrY_paternal_14.29;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.29;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.29;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.29,hg002_chrY_paternal_14.29;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000040;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000040;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000040:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=hg002_chrY_paternal_14.29;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.29;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.29;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.29,hg002_chrY_paternal_14.29;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000040;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000040;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000040:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=hg002_chrY_paternal_14.29;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.29;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.29;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.29,hg002_chrY_paternal_14.29;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000040;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000040;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000040:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=hg002_chrY_paternal_14.29;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.29;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.29;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.29,hg002_chrY_paternal_14.29;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000040;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000040;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000040:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=hg002_chrY_paternal_14.29;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.29;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.29;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.29,hg002_chrY_paternal_14.29;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000040;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000040;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000040:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=hg002_chrY_paternal_14.29;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.29;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.29;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.29,hg002_chrY_paternal_14.29;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000040;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000040;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000040:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=hg002_chrY_paternal_14.29;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.29;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.29;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.29,hg002_chrY_paternal_14.29;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000040;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000040;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000040:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=hg002_chrY_paternal_14.29;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.29;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.29;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.29,hg002_chrY_paternal_14.29;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000040;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000040;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000040:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=hg002_chrY_paternal_14.29;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.29;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.29;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.29,hg002_chrY_paternal_14.29;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000040;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000040;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000040:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=hg002_chrY_paternal_14.29;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.29;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.29;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.29,hg002_chrY_paternal_14.29;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000040;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000040;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000040:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=hg002_chrY_paternal_14.29;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.29;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.29;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.29,hg002_chrY_paternal_14.29;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000040;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000040;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000040:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=hg002_chrY_paternal_14.29;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.29;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.29;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.29,hg002_chrY_paternal_14.29;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000040;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000040;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000040:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111756	.	+	2	source_transcript=hg002_chrY_paternal_14.29;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.29;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.29;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.29,hg002_chrY_paternal_14.29;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000040;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000040;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000040:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=hg002_chrY_paternal_14.29;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.29;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.29;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.29,hg002_chrY_paternal_14.29;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000040;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000040;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000040:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=hg002_chrY_paternal_14.29;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.29;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.29;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.29,hg002_chrY_paternal_14.29;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000040;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000040;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000040:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1112722	1112751	.	+	0	source_transcript=hg002_chrY_paternal_14.29;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.29;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.29;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.29,hg002_chrY_paternal_14.29;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000040;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000040;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000040:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=hg002_chrY_paternal_14.29;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.29;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.29;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.29,hg002_chrY_paternal_14.29;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000040;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000040;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000040:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=hg002_chrY_paternal_14.29;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.29;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.29;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.29,hg002_chrY_paternal_14.29;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000040;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000040;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000040:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1118926	1119061	.	+	0	source_transcript=hg002_chrY_paternal_14.29;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.29;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.29;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.29,hg002_chrY_paternal_14.29;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000040;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000040;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000040:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1123881	.	+	.	source_transcript=hg002_chrY_paternal_14.29;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.29;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.29;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.29,hg002_chrY_paternal_14.29;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000040;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000040;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000040:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=hg002_chrY_paternal_14.29;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.29;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.29;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.29,hg002_chrY_paternal_14.29;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000040;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000040;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000040:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1123882	1123937	.	+	2	source_transcript=hg002_chrY_paternal_14.29;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.29;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.29;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.29,hg002_chrY_paternal_14.29;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000040;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000040;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000040:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1123935	1123937	.	+	0	source_transcript=hg002_chrY_paternal_14.29;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.29;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.29;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.29,hg002_chrY_paternal_14.29;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000040;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000040;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000040;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1141034	.	+	.	source_transcript=hg002_chrY_paternal_14.29;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.29;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.29;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.29,hg002_chrY_paternal_14.29;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000040;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000040;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000040:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1141035	1141698	.	+	.	source_transcript=hg002_chrY_paternal_14.29;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.29;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.29;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.29,hg002_chrY_paternal_14.29;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000040;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000040;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000040:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083966	1128726	100	+	.	source_transcript=hg002_chrY_paternal_14.3;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.3,hg002_chrY_paternal_14.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000041;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_G0000009;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=HG003_chrY_T0000041;Name=CSF2RA
HG003_chrY	CAT	exon	1083966	1084031	.	+	.	source_transcript=hg002_chrY_paternal_14.3;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.3,hg002_chrY_paternal_14.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000041;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000041;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000041:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1091734	.	+	.	source_transcript=hg002_chrY_paternal_14.3;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.3,hg002_chrY_paternal_14.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000041;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000041;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000041:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1091735	1091822	.	+	.	source_transcript=hg002_chrY_paternal_14.3;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.3,hg002_chrY_paternal_14.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000041;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000041;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000041:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1091823	1099694	.	+	.	source_transcript=hg002_chrY_paternal_14.3;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.3,hg002_chrY_paternal_14.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000041;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000041;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000041:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=hg002_chrY_paternal_14.3;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.3,hg002_chrY_paternal_14.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000041;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000041;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000041:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=hg002_chrY_paternal_14.3;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.3,hg002_chrY_paternal_14.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000041;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000041;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000041:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=hg002_chrY_paternal_14.3;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.3,hg002_chrY_paternal_14.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000041;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000041;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000041;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=hg002_chrY_paternal_14.3;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.3,hg002_chrY_paternal_14.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000041;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000041;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000041:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=hg002_chrY_paternal_14.3;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.3,hg002_chrY_paternal_14.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000041;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000041;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000041:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=hg002_chrY_paternal_14.3;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.3,hg002_chrY_paternal_14.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000041;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000041;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000041:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=hg002_chrY_paternal_14.3;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.3,hg002_chrY_paternal_14.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000041;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000041;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000041:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=hg002_chrY_paternal_14.3;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.3,hg002_chrY_paternal_14.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000041;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000041;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000041:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=hg002_chrY_paternal_14.3;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.3,hg002_chrY_paternal_14.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000041;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000041;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000041:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=hg002_chrY_paternal_14.3;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.3,hg002_chrY_paternal_14.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000041;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000041;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000041:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=hg002_chrY_paternal_14.3;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.3,hg002_chrY_paternal_14.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000041;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000041;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000041:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=hg002_chrY_paternal_14.3;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.3,hg002_chrY_paternal_14.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000041;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000041;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000041:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=hg002_chrY_paternal_14.3;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.3,hg002_chrY_paternal_14.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000041;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000041;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000041:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=hg002_chrY_paternal_14.3;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.3,hg002_chrY_paternal_14.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000041;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000041;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000041:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=hg002_chrY_paternal_14.3;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.3,hg002_chrY_paternal_14.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000041;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000041;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000041:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=hg002_chrY_paternal_14.3;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.3,hg002_chrY_paternal_14.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000041;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000041;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000041:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=hg002_chrY_paternal_14.3;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.3,hg002_chrY_paternal_14.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000041;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000041;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000041:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111756	.	+	2	source_transcript=hg002_chrY_paternal_14.3;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.3,hg002_chrY_paternal_14.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000041;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000041;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000041:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=hg002_chrY_paternal_14.3;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.3,hg002_chrY_paternal_14.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000041;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000041;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000041:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=hg002_chrY_paternal_14.3;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.3,hg002_chrY_paternal_14.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000041;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000041;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000041:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1112722	1112751	.	+	0	source_transcript=hg002_chrY_paternal_14.3;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.3,hg002_chrY_paternal_14.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000041;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000041;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000041:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=hg002_chrY_paternal_14.3;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.3,hg002_chrY_paternal_14.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000041;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000041;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000041:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=hg002_chrY_paternal_14.3;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.3,hg002_chrY_paternal_14.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000041;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000041;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000041:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1118926	1119061	.	+	0	source_transcript=hg002_chrY_paternal_14.3;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.3,hg002_chrY_paternal_14.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000041;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000041;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000041:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1128192	.	+	.	source_transcript=hg002_chrY_paternal_14.3;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.3,hg002_chrY_paternal_14.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000041;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000041;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000041:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1128193	1128726	.	+	.	source_transcript=hg002_chrY_paternal_14.3;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.3,hg002_chrY_paternal_14.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000041;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000041;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000041:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1128193	1128380	.	+	2	source_transcript=hg002_chrY_paternal_14.3;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.3,hg002_chrY_paternal_14.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000041;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000041;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000041:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1128378	1128380	.	+	0	source_transcript=hg002_chrY_paternal_14.3;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.3,hg002_chrY_paternal_14.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000041;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000041;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000041;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083966	1141698	100	+	.	source_transcript=hg002_chrY_paternal_14.30;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.30;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.30;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.30,hg002_chrY_paternal_14.30;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000042;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_G0000009;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=HG003_chrY_T0000042;Name=CSF2RA
HG003_chrY	CAT	exon	1083966	1084031	.	+	.	source_transcript=hg002_chrY_paternal_14.30;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.30;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.30;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.30,hg002_chrY_paternal_14.30;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000042;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000042;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000042:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1091734	.	+	.	source_transcript=hg002_chrY_paternal_14.30;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.30;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.30;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.30,hg002_chrY_paternal_14.30;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000042;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000042;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000042:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1091735	1091822	.	+	.	source_transcript=hg002_chrY_paternal_14.30;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.30;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.30;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.30,hg002_chrY_paternal_14.30;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000042;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000042;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000042:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1091823	1099694	.	+	.	source_transcript=hg002_chrY_paternal_14.30;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.30;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.30;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.30,hg002_chrY_paternal_14.30;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000042;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000042;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000042:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=hg002_chrY_paternal_14.30;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.30;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.30;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.30,hg002_chrY_paternal_14.30;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000042;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000042;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000042:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=hg002_chrY_paternal_14.30;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.30;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.30;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.30,hg002_chrY_paternal_14.30;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000042;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000042;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000042:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=hg002_chrY_paternal_14.30;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.30;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.30;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.30,hg002_chrY_paternal_14.30;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000042;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000042;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000042;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=hg002_chrY_paternal_14.30;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.30;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.30;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.30,hg002_chrY_paternal_14.30;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000042;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000042;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000042:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=hg002_chrY_paternal_14.30;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.30;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.30;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.30,hg002_chrY_paternal_14.30;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000042;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000042;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000042:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=hg002_chrY_paternal_14.30;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.30;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.30;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.30,hg002_chrY_paternal_14.30;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000042;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000042;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000042:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=hg002_chrY_paternal_14.30;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.30;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.30;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.30,hg002_chrY_paternal_14.30;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000042;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000042;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000042:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=hg002_chrY_paternal_14.30;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.30;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.30;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.30,hg002_chrY_paternal_14.30;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000042;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000042;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000042:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=hg002_chrY_paternal_14.30;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.30;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.30;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.30,hg002_chrY_paternal_14.30;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000042;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000042;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000042:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=hg002_chrY_paternal_14.30;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.30;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.30;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.30,hg002_chrY_paternal_14.30;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000042;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000042;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000042:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=hg002_chrY_paternal_14.30;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.30;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.30;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.30,hg002_chrY_paternal_14.30;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000042;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000042;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000042:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=hg002_chrY_paternal_14.30;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.30;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.30;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.30,hg002_chrY_paternal_14.30;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000042;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000042;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000042:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=hg002_chrY_paternal_14.30;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.30;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.30;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.30,hg002_chrY_paternal_14.30;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000042;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000042;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000042:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=hg002_chrY_paternal_14.30;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.30;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.30;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.30,hg002_chrY_paternal_14.30;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000042;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000042;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000042:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=hg002_chrY_paternal_14.30;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.30;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.30;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.30,hg002_chrY_paternal_14.30;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000042;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000042;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000042:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=hg002_chrY_paternal_14.30;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.30;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.30;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.30,hg002_chrY_paternal_14.30;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000042;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000042;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000042:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=hg002_chrY_paternal_14.30;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.30;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.30;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.30,hg002_chrY_paternal_14.30;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000042;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000042;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000042:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111756	.	+	2	source_transcript=hg002_chrY_paternal_14.30;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.30;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.30;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.30,hg002_chrY_paternal_14.30;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000042;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000042;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000042:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=hg002_chrY_paternal_14.30;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.30;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.30;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.30,hg002_chrY_paternal_14.30;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000042;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000042;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000042:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=hg002_chrY_paternal_14.30;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.30;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.30;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.30,hg002_chrY_paternal_14.30;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000042;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000042;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000042:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1112722	1112751	.	+	0	source_transcript=hg002_chrY_paternal_14.30;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.30;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.30;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.30,hg002_chrY_paternal_14.30;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000042;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000042;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000042:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=hg002_chrY_paternal_14.30;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.30;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.30;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.30,hg002_chrY_paternal_14.30;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000042;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000042;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000042:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=hg002_chrY_paternal_14.30;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.30;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.30;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.30,hg002_chrY_paternal_14.30;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000042;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000042;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000042:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1118926	1119061	.	+	0	source_transcript=hg002_chrY_paternal_14.30;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.30;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.30;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.30,hg002_chrY_paternal_14.30;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000042;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000042;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000042:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1122358	.	+	.	source_transcript=hg002_chrY_paternal_14.30;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.30;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.30;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.30,hg002_chrY_paternal_14.30;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000042;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000042;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000042:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1122359	1122455	.	+	.	source_transcript=hg002_chrY_paternal_14.30;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.30;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.30;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.30,hg002_chrY_paternal_14.30;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000042;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000042;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000042:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1122359	1122455	.	+	2	source_transcript=hg002_chrY_paternal_14.30;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.30;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.30;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.30,hg002_chrY_paternal_14.30;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000042;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000042;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000042:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1122456	1123881	.	+	.	source_transcript=hg002_chrY_paternal_14.30;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.30;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.30;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.30,hg002_chrY_paternal_14.30;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000042;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000042;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000042:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=hg002_chrY_paternal_14.30;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.30;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.30;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.30,hg002_chrY_paternal_14.30;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000042;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000042;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000042:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1123882	1123963	.	+	1	source_transcript=hg002_chrY_paternal_14.30;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.30;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.30;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.30,hg002_chrY_paternal_14.30;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000042;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000042;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000042:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1141038	.	+	.	source_transcript=hg002_chrY_paternal_14.30;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.30;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.30;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.30,hg002_chrY_paternal_14.30;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000042;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000042;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000042:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1141039	1141698	.	+	.	source_transcript=hg002_chrY_paternal_14.30;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.30;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.30;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.30,hg002_chrY_paternal_14.30;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000042;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000042;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000042:12;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1141039	1141083	.	+	0	source_transcript=hg002_chrY_paternal_14.30;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.30;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.30;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.30,hg002_chrY_paternal_14.30;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000042;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000042;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000042:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1141081	1141083	.	+	0	source_transcript=hg002_chrY_paternal_14.30;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.30;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.30;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.30,hg002_chrY_paternal_14.30;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000042;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000042;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000042;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083966	1141698	100	+	.	source_transcript=hg002_chrY_paternal_14.31;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.31;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.31;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.31,hg002_chrY_paternal_14.31;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000043;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_G0000009;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=HG003_chrY_T0000043;Name=CSF2RA
HG003_chrY	CAT	exon	1083966	1084031	.	+	.	source_transcript=hg002_chrY_paternal_14.31;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.31;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.31;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.31,hg002_chrY_paternal_14.31;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000043;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000043;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000043:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1099694	.	+	.	source_transcript=hg002_chrY_paternal_14.31;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.31;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.31;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.31,hg002_chrY_paternal_14.31;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000043;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000043;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000043:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=hg002_chrY_paternal_14.31;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.31;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.31;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.31,hg002_chrY_paternal_14.31;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000043;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000043;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000043:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=hg002_chrY_paternal_14.31;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.31;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.31;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.31,hg002_chrY_paternal_14.31;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000043;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000043;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000043:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=hg002_chrY_paternal_14.31;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.31;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.31;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.31,hg002_chrY_paternal_14.31;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000043;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000043;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000043;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=hg002_chrY_paternal_14.31;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.31;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.31;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.31,hg002_chrY_paternal_14.31;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000043;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000043;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000043:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=hg002_chrY_paternal_14.31;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.31;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.31;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.31,hg002_chrY_paternal_14.31;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000043;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000043;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000043:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=hg002_chrY_paternal_14.31;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.31;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.31;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.31,hg002_chrY_paternal_14.31;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000043;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000043;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000043:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=hg002_chrY_paternal_14.31;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.31;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.31;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.31,hg002_chrY_paternal_14.31;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000043;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000043;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000043:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=hg002_chrY_paternal_14.31;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.31;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.31;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.31,hg002_chrY_paternal_14.31;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000043;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000043;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000043:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=hg002_chrY_paternal_14.31;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.31;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.31;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.31,hg002_chrY_paternal_14.31;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000043;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000043;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000043:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=hg002_chrY_paternal_14.31;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.31;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.31;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.31,hg002_chrY_paternal_14.31;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000043;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000043;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000043:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=hg002_chrY_paternal_14.31;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.31;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.31;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.31,hg002_chrY_paternal_14.31;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000043;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000043;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000043:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=hg002_chrY_paternal_14.31;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.31;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.31;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.31,hg002_chrY_paternal_14.31;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000043;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000043;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000043:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=hg002_chrY_paternal_14.31;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.31;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.31;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.31,hg002_chrY_paternal_14.31;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000043;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000043;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000043:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=hg002_chrY_paternal_14.31;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.31;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.31;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.31,hg002_chrY_paternal_14.31;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000043;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000043;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000043:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=hg002_chrY_paternal_14.31;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.31;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.31;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.31,hg002_chrY_paternal_14.31;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000043;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000043;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000043:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=hg002_chrY_paternal_14.31;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.31;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.31;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.31,hg002_chrY_paternal_14.31;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000043;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000043;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000043:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=hg002_chrY_paternal_14.31;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.31;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.31;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.31,hg002_chrY_paternal_14.31;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000043;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000043;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000043:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111756	.	+	2	source_transcript=hg002_chrY_paternal_14.31;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.31;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.31;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.31,hg002_chrY_paternal_14.31;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000043;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000043;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000043:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=hg002_chrY_paternal_14.31;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.31;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.31;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.31,hg002_chrY_paternal_14.31;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000043;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000043;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000043:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=hg002_chrY_paternal_14.31;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.31;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.31;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.31,hg002_chrY_paternal_14.31;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000043;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000043;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000043:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1112722	1112751	.	+	0	source_transcript=hg002_chrY_paternal_14.31;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.31;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.31;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.31,hg002_chrY_paternal_14.31;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000043;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000043;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000043:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=hg002_chrY_paternal_14.31;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.31;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.31;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.31,hg002_chrY_paternal_14.31;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000043;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000043;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000043:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=hg002_chrY_paternal_14.31;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.31;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.31;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.31,hg002_chrY_paternal_14.31;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000043;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000043;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000043:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1118926	1119061	.	+	0	source_transcript=hg002_chrY_paternal_14.31;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.31;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.31;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.31,hg002_chrY_paternal_14.31;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000043;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000043;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000043:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1123881	.	+	.	source_transcript=hg002_chrY_paternal_14.31;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.31;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.31;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.31,hg002_chrY_paternal_14.31;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000043;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000043;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000043:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=hg002_chrY_paternal_14.31;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.31;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.31;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.31,hg002_chrY_paternal_14.31;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000043;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000043;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000043:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1123882	1123937	.	+	2	source_transcript=hg002_chrY_paternal_14.31;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.31;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.31;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.31,hg002_chrY_paternal_14.31;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000043;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000043;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000043:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1123935	1123937	.	+	0	source_transcript=hg002_chrY_paternal_14.31;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.31;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.31;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.31,hg002_chrY_paternal_14.31;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000043;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000043;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000043;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1141038	.	+	.	source_transcript=hg002_chrY_paternal_14.31;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.31;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.31;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.31,hg002_chrY_paternal_14.31;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000043;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000043;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000043:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1141039	1141698	.	+	.	source_transcript=hg002_chrY_paternal_14.31;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.31;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.31;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.31,hg002_chrY_paternal_14.31;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000043;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000043;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000043:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083966	1143787	100	+	.	source_transcript=hg002_chrY_paternal_14.32;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.32;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.32;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.32,hg002_chrY_paternal_14.32;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000044;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_G0000009;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=HG003_chrY_T0000044;Name=CSF2RA
HG003_chrY	CAT	exon	1083966	1084031	.	+	.	source_transcript=hg002_chrY_paternal_14.32;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.32;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.32;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.32,hg002_chrY_paternal_14.32;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000044;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000044;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000044:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1091734	.	+	.	source_transcript=hg002_chrY_paternal_14.32;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.32;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.32;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.32,hg002_chrY_paternal_14.32;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000044;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000044;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000044:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1091735	1091798	.	+	.	source_transcript=hg002_chrY_paternal_14.32;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.32;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.32;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.32,hg002_chrY_paternal_14.32;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000044;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000044;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000044:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1091799	1099694	.	+	.	source_transcript=hg002_chrY_paternal_14.32;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.32;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.32;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.32,hg002_chrY_paternal_14.32;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000044;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000044;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000044:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=hg002_chrY_paternal_14.32;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.32;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.32;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.32,hg002_chrY_paternal_14.32;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000044;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000044;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000044:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=hg002_chrY_paternal_14.32;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.32;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.32;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.32,hg002_chrY_paternal_14.32;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000044;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000044;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000044:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=hg002_chrY_paternal_14.32;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.32;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.32;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.32,hg002_chrY_paternal_14.32;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000044;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000044;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000044;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=hg002_chrY_paternal_14.32;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.32;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.32;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.32,hg002_chrY_paternal_14.32;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000044;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000044;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000044:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=hg002_chrY_paternal_14.32;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.32;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.32;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.32,hg002_chrY_paternal_14.32;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000044;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000044;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000044:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=hg002_chrY_paternal_14.32;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.32;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.32;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.32,hg002_chrY_paternal_14.32;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000044;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000044;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000044:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=hg002_chrY_paternal_14.32;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.32;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.32;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.32,hg002_chrY_paternal_14.32;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000044;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000044;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000044:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=hg002_chrY_paternal_14.32;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.32;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.32;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.32,hg002_chrY_paternal_14.32;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000044;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000044;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000044:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=hg002_chrY_paternal_14.32;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.32;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.32;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.32,hg002_chrY_paternal_14.32;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000044;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000044;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000044:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=hg002_chrY_paternal_14.32;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.32;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.32;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.32,hg002_chrY_paternal_14.32;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000044;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000044;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000044:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=hg002_chrY_paternal_14.32;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.32;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.32;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.32,hg002_chrY_paternal_14.32;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000044;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000044;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000044:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=hg002_chrY_paternal_14.32;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.32;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.32;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.32,hg002_chrY_paternal_14.32;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000044;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000044;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000044:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=hg002_chrY_paternal_14.32;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.32;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.32;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.32,hg002_chrY_paternal_14.32;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000044;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000044;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000044:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=hg002_chrY_paternal_14.32;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.32;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.32;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.32,hg002_chrY_paternal_14.32;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000044;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000044;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000044:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=hg002_chrY_paternal_14.32;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.32;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.32;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.32,hg002_chrY_paternal_14.32;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000044;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000044;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000044:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=hg002_chrY_paternal_14.32;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.32;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.32;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.32,hg002_chrY_paternal_14.32;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000044;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000044;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000044:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=hg002_chrY_paternal_14.32;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.32;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.32;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.32,hg002_chrY_paternal_14.32;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000044;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000044;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000044:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111756	.	+	2	source_transcript=hg002_chrY_paternal_14.32;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.32;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.32;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.32,hg002_chrY_paternal_14.32;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000044;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000044;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000044:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=hg002_chrY_paternal_14.32;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.32;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.32;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.32,hg002_chrY_paternal_14.32;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000044;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000044;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000044:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=hg002_chrY_paternal_14.32;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.32;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.32;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.32,hg002_chrY_paternal_14.32;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000044;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000044;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000044:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1112722	1112751	.	+	0	source_transcript=hg002_chrY_paternal_14.32;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.32;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.32;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.32,hg002_chrY_paternal_14.32;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000044;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000044;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000044:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=hg002_chrY_paternal_14.32;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.32;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.32;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.32,hg002_chrY_paternal_14.32;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000044;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000044;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000044:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=hg002_chrY_paternal_14.32;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.32;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.32;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.32,hg002_chrY_paternal_14.32;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000044;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000044;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000044:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1118926	1119061	.	+	0	source_transcript=hg002_chrY_paternal_14.32;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.32;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.32;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.32,hg002_chrY_paternal_14.32;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000044;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000044;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000044:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1122358	.	+	.	source_transcript=hg002_chrY_paternal_14.32;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.32;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.32;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.32,hg002_chrY_paternal_14.32;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000044;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000044;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000044:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1122359	1122455	.	+	.	source_transcript=hg002_chrY_paternal_14.32;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.32;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.32;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.32,hg002_chrY_paternal_14.32;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000044;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000044;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000044:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1122359	1122455	.	+	2	source_transcript=hg002_chrY_paternal_14.32;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.32;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.32;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.32,hg002_chrY_paternal_14.32;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000044;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000044;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000044:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1122456	1123881	.	+	.	source_transcript=hg002_chrY_paternal_14.32;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.32;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.32;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.32,hg002_chrY_paternal_14.32;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000044;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000044;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000044:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=hg002_chrY_paternal_14.32;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.32;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.32;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.32,hg002_chrY_paternal_14.32;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000044;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000044;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000044:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1123882	1123963	.	+	1	source_transcript=hg002_chrY_paternal_14.32;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.32;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.32;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.32,hg002_chrY_paternal_14.32;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000044;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000044;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000044:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1131059	.	+	.	source_transcript=hg002_chrY_paternal_14.32;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.32;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.32;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.32,hg002_chrY_paternal_14.32;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000044;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000044;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000044:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1131060	1131166	.	+	.	source_transcript=hg002_chrY_paternal_14.32;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.32;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.32;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.32,hg002_chrY_paternal_14.32;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000044;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000044;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000044:12;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1131060	1131128	.	+	0	source_transcript=hg002_chrY_paternal_14.32;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.32;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.32;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.32,hg002_chrY_paternal_14.32;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000044;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000044;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000044:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1131126	1131128	.	+	0	source_transcript=hg002_chrY_paternal_14.32;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.32;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.32;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.32,hg002_chrY_paternal_14.32;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000044;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000044;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000044;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1131167	1143596	.	+	.	source_transcript=hg002_chrY_paternal_14.32;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.32;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.32;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.32,hg002_chrY_paternal_14.32;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000044;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000044;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000044:12;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1143597	1143787	.	+	.	source_transcript=hg002_chrY_paternal_14.32;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.32;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.32;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.32,hg002_chrY_paternal_14.32;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000044;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000044;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000044:13;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083966	1143787	100	+	.	source_transcript=hg002_chrY_paternal_14.33;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.33;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.33;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.33,hg002_chrY_paternal_14.33;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000045;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_G0000009;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=HG003_chrY_T0000045;Name=CSF2RA
HG003_chrY	CAT	exon	1083966	1084031	.	+	.	source_transcript=hg002_chrY_paternal_14.33;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.33;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.33;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.33,hg002_chrY_paternal_14.33;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000045;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000045;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000045:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1099694	.	+	.	source_transcript=hg002_chrY_paternal_14.33;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.33;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.33;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.33,hg002_chrY_paternal_14.33;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000045;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000045;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000045:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=hg002_chrY_paternal_14.33;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.33;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.33;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.33,hg002_chrY_paternal_14.33;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000045;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000045;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000045:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=hg002_chrY_paternal_14.33;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.33;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.33;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.33,hg002_chrY_paternal_14.33;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000045;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000045;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000045:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=hg002_chrY_paternal_14.33;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.33;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.33;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.33,hg002_chrY_paternal_14.33;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000045;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000045;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000045;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=hg002_chrY_paternal_14.33;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.33;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.33;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.33,hg002_chrY_paternal_14.33;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000045;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000045;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000045:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=hg002_chrY_paternal_14.33;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.33;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.33;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.33,hg002_chrY_paternal_14.33;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000045;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000045;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000045:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=hg002_chrY_paternal_14.33;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.33;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.33;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.33,hg002_chrY_paternal_14.33;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000045;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000045;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000045:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=hg002_chrY_paternal_14.33;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.33;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.33;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.33,hg002_chrY_paternal_14.33;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000045;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000045;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000045:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=hg002_chrY_paternal_14.33;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.33;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.33;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.33,hg002_chrY_paternal_14.33;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000045;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000045;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000045:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=hg002_chrY_paternal_14.33;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.33;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.33;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.33,hg002_chrY_paternal_14.33;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000045;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000045;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000045:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=hg002_chrY_paternal_14.33;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.33;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.33;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.33,hg002_chrY_paternal_14.33;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000045;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000045;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000045:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=hg002_chrY_paternal_14.33;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.33;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.33;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.33,hg002_chrY_paternal_14.33;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000045;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000045;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000045:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=hg002_chrY_paternal_14.33;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.33;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.33;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.33,hg002_chrY_paternal_14.33;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000045;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000045;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000045:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=hg002_chrY_paternal_14.33;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.33;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.33;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.33,hg002_chrY_paternal_14.33;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000045;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000045;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000045:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=hg002_chrY_paternal_14.33;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.33;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.33;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.33,hg002_chrY_paternal_14.33;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000045;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000045;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000045:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=hg002_chrY_paternal_14.33;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.33;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.33;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.33,hg002_chrY_paternal_14.33;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000045;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000045;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000045:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=hg002_chrY_paternal_14.33;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.33;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.33;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.33,hg002_chrY_paternal_14.33;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000045;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000045;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000045:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=hg002_chrY_paternal_14.33;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.33;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.33;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.33,hg002_chrY_paternal_14.33;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000045;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000045;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000045:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111756	.	+	2	source_transcript=hg002_chrY_paternal_14.33;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.33;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.33;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.33,hg002_chrY_paternal_14.33;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000045;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000045;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000045:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=hg002_chrY_paternal_14.33;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.33;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.33;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.33,hg002_chrY_paternal_14.33;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000045;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000045;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000045:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=hg002_chrY_paternal_14.33;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.33;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.33;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.33,hg002_chrY_paternal_14.33;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000045;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000045;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000045:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1112722	1112751	.	+	0	source_transcript=hg002_chrY_paternal_14.33;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.33;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.33;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.33,hg002_chrY_paternal_14.33;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000045;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000045;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000045:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=hg002_chrY_paternal_14.33;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.33;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.33;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.33,hg002_chrY_paternal_14.33;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000045;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000045;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000045:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=hg002_chrY_paternal_14.33;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.33;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.33;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.33,hg002_chrY_paternal_14.33;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000045;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000045;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000045:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1118926	1119061	.	+	0	source_transcript=hg002_chrY_paternal_14.33;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.33;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.33;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.33,hg002_chrY_paternal_14.33;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000045;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000045;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000045:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1122358	.	+	.	source_transcript=hg002_chrY_paternal_14.33;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.33;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.33;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.33,hg002_chrY_paternal_14.33;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000045;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000045;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000045:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1122359	1122455	.	+	.	source_transcript=hg002_chrY_paternal_14.33;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.33;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.33;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.33,hg002_chrY_paternal_14.33;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000045;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000045;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000045:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1122359	1122455	.	+	2	source_transcript=hg002_chrY_paternal_14.33;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.33;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.33;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.33,hg002_chrY_paternal_14.33;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000045;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000045;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000045:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1122456	1123881	.	+	.	source_transcript=hg002_chrY_paternal_14.33;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.33;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.33;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.33,hg002_chrY_paternal_14.33;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000045;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000045;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000045:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=hg002_chrY_paternal_14.33;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.33;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.33;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.33,hg002_chrY_paternal_14.33;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000045;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000045;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000045:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1123882	1123963	.	+	1	source_transcript=hg002_chrY_paternal_14.33;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.33;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.33;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.33,hg002_chrY_paternal_14.33;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000045;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000045;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000045:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1143596	.	+	.	source_transcript=hg002_chrY_paternal_14.33;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.33;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.33;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.33,hg002_chrY_paternal_14.33;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000045;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000045;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000045:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1143597	1143787	.	+	.	source_transcript=hg002_chrY_paternal_14.33;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.33;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.33;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.33,hg002_chrY_paternal_14.33;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000045;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000045;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000045:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1143597	1143632	.	+	0	source_transcript=hg002_chrY_paternal_14.33;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.33;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.33;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.33,hg002_chrY_paternal_14.33;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000045;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000045;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000045:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1143630	1143632	.	+	0	source_transcript=hg002_chrY_paternal_14.33;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.33;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.33;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.33,hg002_chrY_paternal_14.33;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000045;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000045;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000045;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083966	1143787	100	+	.	source_transcript=hg002_chrY_paternal_14.34;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.34;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.34;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.34,hg002_chrY_paternal_14.34;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000046;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_G0000009;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=HG003_chrY_T0000046;Name=CSF2RA
HG003_chrY	CAT	exon	1083966	1084031	.	+	.	source_transcript=hg002_chrY_paternal_14.34;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.34;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.34;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.34,hg002_chrY_paternal_14.34;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000046;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000046;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000046:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1091734	.	+	.	source_transcript=hg002_chrY_paternal_14.34;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.34;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.34;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.34,hg002_chrY_paternal_14.34;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000046;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000046;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000046:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1091735	1091822	.	+	.	source_transcript=hg002_chrY_paternal_14.34;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.34;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.34;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.34,hg002_chrY_paternal_14.34;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000046;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000046;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000046:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1091823	1099694	.	+	.	source_transcript=hg002_chrY_paternal_14.34;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.34;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.34;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.34,hg002_chrY_paternal_14.34;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000046;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000046;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000046:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=hg002_chrY_paternal_14.34;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.34;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.34;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.34,hg002_chrY_paternal_14.34;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000046;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000046;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000046:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=hg002_chrY_paternal_14.34;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.34;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.34;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.34,hg002_chrY_paternal_14.34;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000046;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000046;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000046:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=hg002_chrY_paternal_14.34;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.34;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.34;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.34,hg002_chrY_paternal_14.34;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000046;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000046;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000046;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=hg002_chrY_paternal_14.34;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.34;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.34;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.34,hg002_chrY_paternal_14.34;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000046;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000046;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000046:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=hg002_chrY_paternal_14.34;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.34;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.34;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.34,hg002_chrY_paternal_14.34;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000046;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000046;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000046:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=hg002_chrY_paternal_14.34;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.34;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.34;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.34,hg002_chrY_paternal_14.34;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000046;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000046;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000046:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=hg002_chrY_paternal_14.34;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.34;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.34;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.34,hg002_chrY_paternal_14.34;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000046;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000046;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000046:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=hg002_chrY_paternal_14.34;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.34;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.34;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.34,hg002_chrY_paternal_14.34;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000046;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000046;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000046:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=hg002_chrY_paternal_14.34;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.34;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.34;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.34,hg002_chrY_paternal_14.34;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000046;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000046;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000046:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=hg002_chrY_paternal_14.34;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.34;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.34;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.34,hg002_chrY_paternal_14.34;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000046;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000046;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000046:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=hg002_chrY_paternal_14.34;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.34;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.34;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.34,hg002_chrY_paternal_14.34;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000046;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000046;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000046:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=hg002_chrY_paternal_14.34;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.34;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.34;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.34,hg002_chrY_paternal_14.34;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000046;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000046;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000046:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=hg002_chrY_paternal_14.34;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.34;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.34;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.34,hg002_chrY_paternal_14.34;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000046;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000046;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000046:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=hg002_chrY_paternal_14.34;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.34;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.34;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.34,hg002_chrY_paternal_14.34;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000046;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000046;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000046:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=hg002_chrY_paternal_14.34;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.34;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.34;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.34,hg002_chrY_paternal_14.34;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000046;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000046;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000046:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=hg002_chrY_paternal_14.34;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.34;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.34;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.34,hg002_chrY_paternal_14.34;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000046;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000046;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000046:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=hg002_chrY_paternal_14.34;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.34;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.34;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.34,hg002_chrY_paternal_14.34;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000046;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000046;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000046:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111756	.	+	2	source_transcript=hg002_chrY_paternal_14.34;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.34;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.34;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.34,hg002_chrY_paternal_14.34;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000046;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000046;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000046:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=hg002_chrY_paternal_14.34;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.34;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.34;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.34,hg002_chrY_paternal_14.34;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000046;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000046;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000046:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=hg002_chrY_paternal_14.34;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.34;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.34;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.34,hg002_chrY_paternal_14.34;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000046;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000046;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000046:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1112722	1112751	.	+	0	source_transcript=hg002_chrY_paternal_14.34;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.34;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.34;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.34,hg002_chrY_paternal_14.34;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000046;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000046;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000046:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=hg002_chrY_paternal_14.34;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.34;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.34;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.34,hg002_chrY_paternal_14.34;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000046;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000046;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000046:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=hg002_chrY_paternal_14.34;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.34;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.34;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.34,hg002_chrY_paternal_14.34;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000046;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000046;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000046:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1118926	1119061	.	+	0	source_transcript=hg002_chrY_paternal_14.34;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.34;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.34;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.34,hg002_chrY_paternal_14.34;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000046;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000046;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000046:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1122358	.	+	.	source_transcript=hg002_chrY_paternal_14.34;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.34;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.34;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.34,hg002_chrY_paternal_14.34;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000046;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000046;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000046:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1122359	1122455	.	+	.	source_transcript=hg002_chrY_paternal_14.34;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.34;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.34;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.34,hg002_chrY_paternal_14.34;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000046;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000046;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000046:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1122359	1122455	.	+	2	source_transcript=hg002_chrY_paternal_14.34;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.34;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.34;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.34,hg002_chrY_paternal_14.34;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000046;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000046;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000046:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1122456	1123881	.	+	.	source_transcript=hg002_chrY_paternal_14.34;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.34;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.34;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.34,hg002_chrY_paternal_14.34;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000046;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000046;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000046:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=hg002_chrY_paternal_14.34;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.34;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.34;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.34,hg002_chrY_paternal_14.34;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000046;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000046;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000046:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1123882	1123963	.	+	1	source_transcript=hg002_chrY_paternal_14.34;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.34;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.34;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.34,hg002_chrY_paternal_14.34;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000046;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000046;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000046:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1143596	.	+	.	source_transcript=hg002_chrY_paternal_14.34;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.34;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.34;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.34,hg002_chrY_paternal_14.34;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000046;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000046;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000046:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1143597	1143787	.	+	.	source_transcript=hg002_chrY_paternal_14.34;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.34;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.34;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.34,hg002_chrY_paternal_14.34;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000046;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000046;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000046:12;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1143597	1143632	.	+	0	source_transcript=hg002_chrY_paternal_14.34;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.34;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.34;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.34,hg002_chrY_paternal_14.34;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000046;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000046;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000046:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1143630	1143632	.	+	0	source_transcript=hg002_chrY_paternal_14.34;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.34;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.34;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.34,hg002_chrY_paternal_14.34;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000046;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000046;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000046;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083966	1143787	100	+	.	source_transcript=hg002_chrY_paternal_14.35;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.35;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.35;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.35,hg002_chrY_paternal_14.35;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000047;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_G0000009;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=HG003_chrY_T0000047;Name=CSF2RA
HG003_chrY	CAT	exon	1083966	1084031	.	+	.	source_transcript=hg002_chrY_paternal_14.35;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.35;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.35;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.35,hg002_chrY_paternal_14.35;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000047;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000047;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000047:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1099694	.	+	.	source_transcript=hg002_chrY_paternal_14.35;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.35;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.35;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.35,hg002_chrY_paternal_14.35;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000047;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000047;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000047:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=hg002_chrY_paternal_14.35;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.35;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.35;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.35,hg002_chrY_paternal_14.35;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000047;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000047;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000047:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=hg002_chrY_paternal_14.35;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.35;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.35;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.35,hg002_chrY_paternal_14.35;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000047;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000047;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000047:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=hg002_chrY_paternal_14.35;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.35;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.35;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.35,hg002_chrY_paternal_14.35;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000047;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000047;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000047;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=hg002_chrY_paternal_14.35;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.35;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.35;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.35,hg002_chrY_paternal_14.35;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000047;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000047;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000047:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=hg002_chrY_paternal_14.35;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.35;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.35;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.35,hg002_chrY_paternal_14.35;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000047;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000047;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000047:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=hg002_chrY_paternal_14.35;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.35;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.35;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.35,hg002_chrY_paternal_14.35;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000047;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000047;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000047:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=hg002_chrY_paternal_14.35;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.35;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.35;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.35,hg002_chrY_paternal_14.35;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000047;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000047;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000047:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=hg002_chrY_paternal_14.35;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.35;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.35;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.35,hg002_chrY_paternal_14.35;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000047;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000047;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000047:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=hg002_chrY_paternal_14.35;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.35;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.35;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.35,hg002_chrY_paternal_14.35;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000047;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000047;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000047:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=hg002_chrY_paternal_14.35;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.35;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.35;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.35,hg002_chrY_paternal_14.35;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000047;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000047;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000047:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=hg002_chrY_paternal_14.35;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.35;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.35;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.35,hg002_chrY_paternal_14.35;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000047;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000047;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000047:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=hg002_chrY_paternal_14.35;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.35;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.35;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.35,hg002_chrY_paternal_14.35;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000047;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000047;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000047:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=hg002_chrY_paternal_14.35;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.35;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.35;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.35,hg002_chrY_paternal_14.35;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000047;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000047;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000047:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=hg002_chrY_paternal_14.35;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.35;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.35;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.35,hg002_chrY_paternal_14.35;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000047;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000047;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000047:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=hg002_chrY_paternal_14.35;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.35;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.35;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.35,hg002_chrY_paternal_14.35;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000047;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000047;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000047:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=hg002_chrY_paternal_14.35;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.35;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.35;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.35,hg002_chrY_paternal_14.35;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000047;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000047;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000047:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=hg002_chrY_paternal_14.35;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.35;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.35;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.35,hg002_chrY_paternal_14.35;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000047;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000047;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000047:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111756	.	+	2	source_transcript=hg002_chrY_paternal_14.35;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.35;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.35;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.35,hg002_chrY_paternal_14.35;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000047;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000047;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000047:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=hg002_chrY_paternal_14.35;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.35;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.35;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.35,hg002_chrY_paternal_14.35;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000047;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000047;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000047:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=hg002_chrY_paternal_14.35;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.35;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.35;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.35,hg002_chrY_paternal_14.35;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000047;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000047;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000047:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1112722	1112751	.	+	0	source_transcript=hg002_chrY_paternal_14.35;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.35;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.35;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.35,hg002_chrY_paternal_14.35;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000047;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000047;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000047:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=hg002_chrY_paternal_14.35;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.35;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.35;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.35,hg002_chrY_paternal_14.35;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000047;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000047;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000047:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=hg002_chrY_paternal_14.35;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.35;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.35;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.35,hg002_chrY_paternal_14.35;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000047;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000047;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000047:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1118926	1119061	.	+	0	source_transcript=hg002_chrY_paternal_14.35;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.35;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.35;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.35,hg002_chrY_paternal_14.35;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000047;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000047;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000047:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1123881	.	+	.	source_transcript=hg002_chrY_paternal_14.35;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.35;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.35;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.35,hg002_chrY_paternal_14.35;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000047;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000047;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000047:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=hg002_chrY_paternal_14.35;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.35;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.35;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.35,hg002_chrY_paternal_14.35;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000047;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000047;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000047:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1123882	1123937	.	+	2	source_transcript=hg002_chrY_paternal_14.35;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.35;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.35;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.35,hg002_chrY_paternal_14.35;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000047;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000047;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000047:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1123935	1123937	.	+	0	source_transcript=hg002_chrY_paternal_14.35;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.35;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.35;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.35,hg002_chrY_paternal_14.35;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000047;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000047;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000047;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1143596	.	+	.	source_transcript=hg002_chrY_paternal_14.35;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.35;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.35;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.35,hg002_chrY_paternal_14.35;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000047;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000047;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000047:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1143597	1143787	.	+	.	source_transcript=hg002_chrY_paternal_14.35;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.35;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.35;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.35,hg002_chrY_paternal_14.35;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000047;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000047;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000047:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083966	1143787	100	+	.	source_transcript=hg002_chrY_paternal_14.36;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.36;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.36;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.36,hg002_chrY_paternal_14.36;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000048;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_G0000009;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=HG003_chrY_T0000048;Name=CSF2RA
HG003_chrY	CAT	exon	1083966	1084031	.	+	.	source_transcript=hg002_chrY_paternal_14.36;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.36;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.36;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.36,hg002_chrY_paternal_14.36;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000048;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000048;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000048:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1091734	.	+	.	source_transcript=hg002_chrY_paternal_14.36;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.36;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.36;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.36,hg002_chrY_paternal_14.36;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000048;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000048;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000048:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1091735	1091798	.	+	.	source_transcript=hg002_chrY_paternal_14.36;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.36;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.36;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.36,hg002_chrY_paternal_14.36;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000048;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000048;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000048:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1091799	1099694	.	+	.	source_transcript=hg002_chrY_paternal_14.36;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.36;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.36;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.36,hg002_chrY_paternal_14.36;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000048;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000048;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000048:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=hg002_chrY_paternal_14.36;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.36;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.36;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.36,hg002_chrY_paternal_14.36;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000048;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000048;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000048:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=hg002_chrY_paternal_14.36;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.36;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.36;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.36,hg002_chrY_paternal_14.36;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000048;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000048;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000048:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=hg002_chrY_paternal_14.36;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.36;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.36;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.36,hg002_chrY_paternal_14.36;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000048;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000048;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000048;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=hg002_chrY_paternal_14.36;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.36;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.36;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.36,hg002_chrY_paternal_14.36;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000048;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000048;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000048:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=hg002_chrY_paternal_14.36;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.36;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.36;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.36,hg002_chrY_paternal_14.36;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000048;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000048;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000048:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=hg002_chrY_paternal_14.36;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.36;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.36;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.36,hg002_chrY_paternal_14.36;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000048;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000048;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000048:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=hg002_chrY_paternal_14.36;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.36;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.36;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.36,hg002_chrY_paternal_14.36;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000048;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000048;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000048:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=hg002_chrY_paternal_14.36;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.36;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.36;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.36,hg002_chrY_paternal_14.36;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000048;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000048;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000048:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=hg002_chrY_paternal_14.36;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.36;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.36;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.36,hg002_chrY_paternal_14.36;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000048;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000048;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000048:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=hg002_chrY_paternal_14.36;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.36;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.36;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.36,hg002_chrY_paternal_14.36;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000048;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000048;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000048:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=hg002_chrY_paternal_14.36;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.36;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.36;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.36,hg002_chrY_paternal_14.36;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000048;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000048;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000048:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=hg002_chrY_paternal_14.36;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.36;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.36;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.36,hg002_chrY_paternal_14.36;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000048;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000048;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000048:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=hg002_chrY_paternal_14.36;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.36;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.36;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.36,hg002_chrY_paternal_14.36;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000048;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000048;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000048:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=hg002_chrY_paternal_14.36;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.36;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.36;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.36,hg002_chrY_paternal_14.36;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000048;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000048;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000048:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=hg002_chrY_paternal_14.36;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.36;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.36;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.36,hg002_chrY_paternal_14.36;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000048;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000048;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000048:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=hg002_chrY_paternal_14.36;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.36;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.36;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.36,hg002_chrY_paternal_14.36;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000048;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000048;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000048:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=hg002_chrY_paternal_14.36;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.36;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.36;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.36,hg002_chrY_paternal_14.36;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000048;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000048;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000048:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111756	.	+	2	source_transcript=hg002_chrY_paternal_14.36;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.36;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.36;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.36,hg002_chrY_paternal_14.36;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000048;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000048;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000048:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=hg002_chrY_paternal_14.36;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.36;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.36;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.36,hg002_chrY_paternal_14.36;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000048;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000048;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000048:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=hg002_chrY_paternal_14.36;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.36;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.36;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.36,hg002_chrY_paternal_14.36;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000048;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000048;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000048:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1112722	1112751	.	+	0	source_transcript=hg002_chrY_paternal_14.36;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.36;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.36;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.36,hg002_chrY_paternal_14.36;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000048;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000048;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000048:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=hg002_chrY_paternal_14.36;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.36;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.36;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.36,hg002_chrY_paternal_14.36;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000048;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000048;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000048:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=hg002_chrY_paternal_14.36;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.36;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.36;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.36,hg002_chrY_paternal_14.36;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000048;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000048;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000048:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1118926	1119061	.	+	0	source_transcript=hg002_chrY_paternal_14.36;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.36;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.36;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.36,hg002_chrY_paternal_14.36;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000048;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000048;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000048:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1122358	.	+	.	source_transcript=hg002_chrY_paternal_14.36;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.36;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.36;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.36,hg002_chrY_paternal_14.36;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000048;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000048;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000048:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1122359	1122455	.	+	.	source_transcript=hg002_chrY_paternal_14.36;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.36;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.36;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.36,hg002_chrY_paternal_14.36;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000048;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000048;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000048:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1122359	1122455	.	+	2	source_transcript=hg002_chrY_paternal_14.36;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.36;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.36;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.36,hg002_chrY_paternal_14.36;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000048;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000048;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000048:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1122456	1123881	.	+	.	source_transcript=hg002_chrY_paternal_14.36;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.36;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.36;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.36,hg002_chrY_paternal_14.36;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000048;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000048;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000048:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=hg002_chrY_paternal_14.36;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.36;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.36;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.36,hg002_chrY_paternal_14.36;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000048;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000048;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000048:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1123882	1123963	.	+	1	source_transcript=hg002_chrY_paternal_14.36;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.36;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.36;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.36,hg002_chrY_paternal_14.36;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000048;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000048;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000048:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1143596	.	+	.	source_transcript=hg002_chrY_paternal_14.36;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.36;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.36;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.36,hg002_chrY_paternal_14.36;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000048;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000048;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000048:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1143597	1143787	.	+	.	source_transcript=hg002_chrY_paternal_14.36;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.36;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.36;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.36,hg002_chrY_paternal_14.36;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000048;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000048;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000048:12;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1143597	1143632	.	+	0	source_transcript=hg002_chrY_paternal_14.36;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.36;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.36;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.36,hg002_chrY_paternal_14.36;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000048;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000048;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000048:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1143630	1143632	.	+	0	source_transcript=hg002_chrY_paternal_14.36;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.36;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.36;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.36,hg002_chrY_paternal_14.36;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000048;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000048;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000048;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083966	1128726	100	+	.	source_transcript=hg002_chrY_paternal_14.4;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.4,hg002_chrY_paternal_14.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_G0000009;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=HG003_chrY_T0000049;Name=CSF2RA
HG003_chrY	CAT	exon	1083966	1084031	.	+	.	source_transcript=hg002_chrY_paternal_14.4;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.4,hg002_chrY_paternal_14.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000049;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000049:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1091734	.	+	.	source_transcript=hg002_chrY_paternal_14.4;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.4,hg002_chrY_paternal_14.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000049;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000049:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1091735	1091798	.	+	.	source_transcript=hg002_chrY_paternal_14.4;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.4,hg002_chrY_paternal_14.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000049;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000049:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1091799	1099694	.	+	.	source_transcript=hg002_chrY_paternal_14.4;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.4,hg002_chrY_paternal_14.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000049;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000049:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=hg002_chrY_paternal_14.4;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.4,hg002_chrY_paternal_14.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000049;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000049:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=hg002_chrY_paternal_14.4;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.4,hg002_chrY_paternal_14.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000049;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000049:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=hg002_chrY_paternal_14.4;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.4,hg002_chrY_paternal_14.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000049;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000049;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=hg002_chrY_paternal_14.4;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.4,hg002_chrY_paternal_14.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000049;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000049:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=hg002_chrY_paternal_14.4;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.4,hg002_chrY_paternal_14.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000049;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000049:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=hg002_chrY_paternal_14.4;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.4,hg002_chrY_paternal_14.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000049;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000049:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=hg002_chrY_paternal_14.4;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.4,hg002_chrY_paternal_14.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000049;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000049:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=hg002_chrY_paternal_14.4;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.4,hg002_chrY_paternal_14.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000049;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000049:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=hg002_chrY_paternal_14.4;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.4,hg002_chrY_paternal_14.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000049;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000049:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=hg002_chrY_paternal_14.4;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.4,hg002_chrY_paternal_14.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000049;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000049:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=hg002_chrY_paternal_14.4;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.4,hg002_chrY_paternal_14.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000049;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000049:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=hg002_chrY_paternal_14.4;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.4,hg002_chrY_paternal_14.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000049;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000049:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=hg002_chrY_paternal_14.4;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.4,hg002_chrY_paternal_14.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000049;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000049:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=hg002_chrY_paternal_14.4;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.4,hg002_chrY_paternal_14.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000049;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000049:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=hg002_chrY_paternal_14.4;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.4,hg002_chrY_paternal_14.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000049;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000049:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=hg002_chrY_paternal_14.4;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.4,hg002_chrY_paternal_14.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000049;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000049:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=hg002_chrY_paternal_14.4;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.4,hg002_chrY_paternal_14.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000049;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000049:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111756	.	+	2	source_transcript=hg002_chrY_paternal_14.4;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.4,hg002_chrY_paternal_14.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000049;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000049:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=hg002_chrY_paternal_14.4;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.4,hg002_chrY_paternal_14.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000049;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000049:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=hg002_chrY_paternal_14.4;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.4,hg002_chrY_paternal_14.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000049;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000049:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1112722	1112751	.	+	0	source_transcript=hg002_chrY_paternal_14.4;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.4,hg002_chrY_paternal_14.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000049;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000049:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=hg002_chrY_paternal_14.4;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.4,hg002_chrY_paternal_14.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000049;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000049:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=hg002_chrY_paternal_14.4;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.4,hg002_chrY_paternal_14.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000049;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000049:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1118926	1119061	.	+	0	source_transcript=hg002_chrY_paternal_14.4;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.4,hg002_chrY_paternal_14.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000049;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000049:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1123881	.	+	.	source_transcript=hg002_chrY_paternal_14.4;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.4,hg002_chrY_paternal_14.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000049;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000049:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=hg002_chrY_paternal_14.4;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.4,hg002_chrY_paternal_14.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000049;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000049:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1123882	1123937	.	+	2	source_transcript=hg002_chrY_paternal_14.4;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.4,hg002_chrY_paternal_14.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000049;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000049:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1123935	1123937	.	+	0	source_transcript=hg002_chrY_paternal_14.4;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.4,hg002_chrY_paternal_14.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000049;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000049;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1128192	.	+	.	source_transcript=hg002_chrY_paternal_14.4;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.4,hg002_chrY_paternal_14.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000049;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000049:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1128193	1128726	.	+	.	source_transcript=hg002_chrY_paternal_14.4;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.4,hg002_chrY_paternal_14.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000049;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000049:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083966	1128726	100	+	.	source_transcript=hg002_chrY_paternal_14.5;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.5,hg002_chrY_paternal_14.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000050;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_G0000009;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=HG003_chrY_T0000050;Name=CSF2RA
HG003_chrY	CAT	exon	1083966	1084031	.	+	.	source_transcript=hg002_chrY_paternal_14.5;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.5,hg002_chrY_paternal_14.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000050;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000050;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000050:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1091734	.	+	.	source_transcript=hg002_chrY_paternal_14.5;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.5,hg002_chrY_paternal_14.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000050;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000050;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000050:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1091735	1091822	.	+	.	source_transcript=hg002_chrY_paternal_14.5;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.5,hg002_chrY_paternal_14.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000050;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000050;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000050:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1091823	1099694	.	+	.	source_transcript=hg002_chrY_paternal_14.5;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.5,hg002_chrY_paternal_14.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000050;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000050;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000050:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=hg002_chrY_paternal_14.5;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.5,hg002_chrY_paternal_14.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000050;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000050;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000050:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=hg002_chrY_paternal_14.5;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.5,hg002_chrY_paternal_14.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000050;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000050;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000050:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=hg002_chrY_paternal_14.5;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.5,hg002_chrY_paternal_14.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000050;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000050;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000050;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=hg002_chrY_paternal_14.5;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.5,hg002_chrY_paternal_14.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000050;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000050;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000050:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=hg002_chrY_paternal_14.5;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.5,hg002_chrY_paternal_14.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000050;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000050;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000050:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=hg002_chrY_paternal_14.5;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.5,hg002_chrY_paternal_14.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000050;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000050;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000050:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=hg002_chrY_paternal_14.5;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.5,hg002_chrY_paternal_14.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000050;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000050;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000050:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=hg002_chrY_paternal_14.5;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.5,hg002_chrY_paternal_14.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000050;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000050;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000050:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=hg002_chrY_paternal_14.5;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.5,hg002_chrY_paternal_14.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000050;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000050;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000050:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=hg002_chrY_paternal_14.5;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.5,hg002_chrY_paternal_14.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000050;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000050;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000050:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=hg002_chrY_paternal_14.5;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.5,hg002_chrY_paternal_14.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000050;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000050;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000050:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=hg002_chrY_paternal_14.5;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.5,hg002_chrY_paternal_14.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000050;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000050;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000050:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=hg002_chrY_paternal_14.5;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.5,hg002_chrY_paternal_14.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000050;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000050;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000050:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=hg002_chrY_paternal_14.5;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.5,hg002_chrY_paternal_14.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000050;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000050;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000050:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=hg002_chrY_paternal_14.5;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.5,hg002_chrY_paternal_14.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000050;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000050;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000050:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1123881	.	+	.	source_transcript=hg002_chrY_paternal_14.5;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.5,hg002_chrY_paternal_14.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000050;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000050;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000050:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=hg002_chrY_paternal_14.5;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.5,hg002_chrY_paternal_14.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000050;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000050;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000050:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1123882	1123937	.	+	2	source_transcript=hg002_chrY_paternal_14.5;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.5,hg002_chrY_paternal_14.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000050;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000050;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000050:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1123935	1123937	.	+	0	source_transcript=hg002_chrY_paternal_14.5;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.5,hg002_chrY_paternal_14.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000050;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000050;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000050;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1128192	.	+	.	source_transcript=hg002_chrY_paternal_14.5;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.5,hg002_chrY_paternal_14.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000050;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000050;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000050:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1128193	1128726	.	+	.	source_transcript=hg002_chrY_paternal_14.5;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.5,hg002_chrY_paternal_14.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000050;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000050;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000050:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083966	1128726	100	+	.	source_transcript=hg002_chrY_paternal_14.7;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.7;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.7,hg002_chrY_paternal_14.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_G0000009;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=HG003_chrY_T0000051;Name=CSF2RA
HG003_chrY	CAT	exon	1083966	1084031	.	+	.	source_transcript=hg002_chrY_paternal_14.7;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.7,hg002_chrY_paternal_14.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000051;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000051:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1091734	.	+	.	source_transcript=hg002_chrY_paternal_14.7;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.7,hg002_chrY_paternal_14.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000051;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000051:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1091735	1091798	.	+	.	source_transcript=hg002_chrY_paternal_14.7;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.7,hg002_chrY_paternal_14.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000051;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000051:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1091799	1099425	.	+	.	source_transcript=hg002_chrY_paternal_14.7;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.7,hg002_chrY_paternal_14.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000051;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000051:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099426	1099577	.	+	.	source_transcript=hg002_chrY_paternal_14.7;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.7,hg002_chrY_paternal_14.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000051;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000051:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099578	1099694	.	+	.	source_transcript=hg002_chrY_paternal_14.7;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.7,hg002_chrY_paternal_14.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000051;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000051:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=hg002_chrY_paternal_14.7;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.7,hg002_chrY_paternal_14.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000051;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000051:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=hg002_chrY_paternal_14.7;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.7,hg002_chrY_paternal_14.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000051;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000051:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=hg002_chrY_paternal_14.7;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.7,hg002_chrY_paternal_14.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000051;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000051;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=hg002_chrY_paternal_14.7;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.7,hg002_chrY_paternal_14.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000051;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000051:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=hg002_chrY_paternal_14.7;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.7,hg002_chrY_paternal_14.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000051;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000051:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=hg002_chrY_paternal_14.7;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.7,hg002_chrY_paternal_14.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000051;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000051:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=hg002_chrY_paternal_14.7;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.7,hg002_chrY_paternal_14.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000051;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000051:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=hg002_chrY_paternal_14.7;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.7,hg002_chrY_paternal_14.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000051;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000051:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=hg002_chrY_paternal_14.7;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.7,hg002_chrY_paternal_14.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000051;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000051:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=hg002_chrY_paternal_14.7;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.7,hg002_chrY_paternal_14.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000051;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000051:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=hg002_chrY_paternal_14.7;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.7,hg002_chrY_paternal_14.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000051;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000051:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=hg002_chrY_paternal_14.7;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.7,hg002_chrY_paternal_14.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000051;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000051:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=hg002_chrY_paternal_14.7;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.7,hg002_chrY_paternal_14.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000051;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000051:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=hg002_chrY_paternal_14.7;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.7,hg002_chrY_paternal_14.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000051;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000051:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=hg002_chrY_paternal_14.7;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.7,hg002_chrY_paternal_14.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000051;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000051:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=hg002_chrY_paternal_14.7;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.7,hg002_chrY_paternal_14.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000051;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000051:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=hg002_chrY_paternal_14.7;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.7,hg002_chrY_paternal_14.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000051;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000051:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111756	.	+	2	source_transcript=hg002_chrY_paternal_14.7;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.7,hg002_chrY_paternal_14.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000051;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000051:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=hg002_chrY_paternal_14.7;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.7,hg002_chrY_paternal_14.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000051;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000051:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=hg002_chrY_paternal_14.7;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.7,hg002_chrY_paternal_14.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000051;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000051:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1112722	1112751	.	+	0	source_transcript=hg002_chrY_paternal_14.7;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.7,hg002_chrY_paternal_14.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000051;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000051:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=hg002_chrY_paternal_14.7;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.7,hg002_chrY_paternal_14.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000051;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000051:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=hg002_chrY_paternal_14.7;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.7,hg002_chrY_paternal_14.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000051;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000051:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1118926	1119061	.	+	0	source_transcript=hg002_chrY_paternal_14.7;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.7,hg002_chrY_paternal_14.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000051;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000051:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1122358	.	+	.	source_transcript=hg002_chrY_paternal_14.7;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.7,hg002_chrY_paternal_14.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000051;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000051:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1122359	1122455	.	+	.	source_transcript=hg002_chrY_paternal_14.7;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.7,hg002_chrY_paternal_14.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000051;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000051:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1122359	1122455	.	+	2	source_transcript=hg002_chrY_paternal_14.7;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.7,hg002_chrY_paternal_14.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000051;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000051:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1122456	1123881	.	+	.	source_transcript=hg002_chrY_paternal_14.7;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.7,hg002_chrY_paternal_14.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000051;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000051:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=hg002_chrY_paternal_14.7;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.7,hg002_chrY_paternal_14.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000051;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000051:12;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1123882	1123963	.	+	1	source_transcript=hg002_chrY_paternal_14.7;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.7,hg002_chrY_paternal_14.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000051;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000051:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1128192	.	+	.	source_transcript=hg002_chrY_paternal_14.7;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.7,hg002_chrY_paternal_14.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000051;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000051:12;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1128193	1128726	.	+	.	source_transcript=hg002_chrY_paternal_14.7;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.7,hg002_chrY_paternal_14.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000051;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000051:13;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1128193	1128270	.	+	0	source_transcript=hg002_chrY_paternal_14.7;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.7,hg002_chrY_paternal_14.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000051;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000051:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1128268	1128270	.	+	0	source_transcript=hg002_chrY_paternal_14.7;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.7,hg002_chrY_paternal_14.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000051;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000051;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083966	1128726	100	+	.	source_transcript=hg002_chrY_paternal_14.8;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.8;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.8,hg002_chrY_paternal_14.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_G0000009;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=HG003_chrY_T0000052;Name=CSF2RA
HG003_chrY	CAT	exon	1083966	1084031	.	+	.	source_transcript=hg002_chrY_paternal_14.8;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.8,hg002_chrY_paternal_14.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000052;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000052:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1091734	.	+	.	source_transcript=hg002_chrY_paternal_14.8;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.8,hg002_chrY_paternal_14.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000052;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000052:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1091735	1091798	.	+	.	source_transcript=hg002_chrY_paternal_14.8;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.8,hg002_chrY_paternal_14.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000052;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000052:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1091799	1099694	.	+	.	source_transcript=hg002_chrY_paternal_14.8;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.8,hg002_chrY_paternal_14.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000052;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000052:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=hg002_chrY_paternal_14.8;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.8,hg002_chrY_paternal_14.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000052;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000052:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=hg002_chrY_paternal_14.8;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.8,hg002_chrY_paternal_14.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000052;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000052:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=hg002_chrY_paternal_14.8;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.8,hg002_chrY_paternal_14.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000052;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000052;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=hg002_chrY_paternal_14.8;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.8,hg002_chrY_paternal_14.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000052;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000052:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=hg002_chrY_paternal_14.8;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.8,hg002_chrY_paternal_14.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000052;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000052:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=hg002_chrY_paternal_14.8;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.8,hg002_chrY_paternal_14.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000052;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000052:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=hg002_chrY_paternal_14.8;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.8,hg002_chrY_paternal_14.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000052;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000052:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=hg002_chrY_paternal_14.8;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.8,hg002_chrY_paternal_14.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000052;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000052:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=hg002_chrY_paternal_14.8;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.8,hg002_chrY_paternal_14.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000052;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000052:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=hg002_chrY_paternal_14.8;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.8,hg002_chrY_paternal_14.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000052;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000052:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=hg002_chrY_paternal_14.8;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.8,hg002_chrY_paternal_14.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000052;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000052:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=hg002_chrY_paternal_14.8;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.8,hg002_chrY_paternal_14.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000052;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000052:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=hg002_chrY_paternal_14.8;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.8,hg002_chrY_paternal_14.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000052;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000052:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=hg002_chrY_paternal_14.8;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.8,hg002_chrY_paternal_14.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000052;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000052:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=hg002_chrY_paternal_14.8;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.8,hg002_chrY_paternal_14.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000052;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000052:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=hg002_chrY_paternal_14.8;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.8,hg002_chrY_paternal_14.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000052;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000052:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=hg002_chrY_paternal_14.8;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.8,hg002_chrY_paternal_14.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000052;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000052:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111756	.	+	2	source_transcript=hg002_chrY_paternal_14.8;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.8,hg002_chrY_paternal_14.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000052;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000052:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=hg002_chrY_paternal_14.8;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.8,hg002_chrY_paternal_14.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000052;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000052:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=hg002_chrY_paternal_14.8;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.8,hg002_chrY_paternal_14.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000052;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000052:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1112722	1112751	.	+	0	source_transcript=hg002_chrY_paternal_14.8;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.8,hg002_chrY_paternal_14.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000052;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000052:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=hg002_chrY_paternal_14.8;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.8,hg002_chrY_paternal_14.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000052;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000052:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=hg002_chrY_paternal_14.8;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.8,hg002_chrY_paternal_14.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000052;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000052:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1118926	1119061	.	+	0	source_transcript=hg002_chrY_paternal_14.8;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.8,hg002_chrY_paternal_14.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000052;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000052:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1121696	.	+	.	source_transcript=hg002_chrY_paternal_14.8;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.8,hg002_chrY_paternal_14.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000052;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000052:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1121697	1121798	.	+	.	source_transcript=hg002_chrY_paternal_14.8;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.8,hg002_chrY_paternal_14.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000052;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000052:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1121697	1121798	.	+	2	source_transcript=hg002_chrY_paternal_14.8;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.8,hg002_chrY_paternal_14.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000052;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000052:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1121799	1122358	.	+	.	source_transcript=hg002_chrY_paternal_14.8;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.8,hg002_chrY_paternal_14.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000052;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000052:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1122359	1122455	.	+	.	source_transcript=hg002_chrY_paternal_14.8;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.8,hg002_chrY_paternal_14.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000052;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000052:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1122359	1122455	.	+	2	source_transcript=hg002_chrY_paternal_14.8;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.8,hg002_chrY_paternal_14.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000052;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000052:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1122456	1123881	.	+	.	source_transcript=hg002_chrY_paternal_14.8;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.8,hg002_chrY_paternal_14.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000052;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000052:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=hg002_chrY_paternal_14.8;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.8,hg002_chrY_paternal_14.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000052;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000052:12;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1123882	1123963	.	+	1	source_transcript=hg002_chrY_paternal_14.8;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.8,hg002_chrY_paternal_14.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000052;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000052:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1128192	.	+	.	source_transcript=hg002_chrY_paternal_14.8;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.8,hg002_chrY_paternal_14.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000052;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000052:12;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1128193	1128726	.	+	.	source_transcript=hg002_chrY_paternal_14.8;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.8,hg002_chrY_paternal_14.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000052;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000052:13;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1128193	1128270	.	+	0	source_transcript=hg002_chrY_paternal_14.8;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.8,hg002_chrY_paternal_14.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000052;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000052:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1128268	1128270	.	+	0	source_transcript=hg002_chrY_paternal_14.8;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.8,hg002_chrY_paternal_14.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000052;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000052;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083966	1128726	100	+	.	source_transcript=hg002_chrY_paternal_14.9;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.9;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.9,hg002_chrY_paternal_14.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000053;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_G0000009;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=HG003_chrY_T0000053;Name=CSF2RA
HG003_chrY	CAT	exon	1083966	1084031	.	+	.	source_transcript=hg002_chrY_paternal_14.9;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.9,hg002_chrY_paternal_14.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000053;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000053;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000053:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1099694	.	+	.	source_transcript=hg002_chrY_paternal_14.9;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.9,hg002_chrY_paternal_14.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000053;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000053;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000053:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=hg002_chrY_paternal_14.9;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.9,hg002_chrY_paternal_14.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000053;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000053;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000053:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1105517	.	+	.	source_transcript=hg002_chrY_paternal_14.9;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.9,hg002_chrY_paternal_14.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000053;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000053;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000053:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=hg002_chrY_paternal_14.9;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.9,hg002_chrY_paternal_14.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000053;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000053;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000053:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=hg002_chrY_paternal_14.9;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.9,hg002_chrY_paternal_14.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000053;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000053;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000053:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=hg002_chrY_paternal_14.9;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.9,hg002_chrY_paternal_14.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000053;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000053;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000053:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105814	1105887	.	+	0	source_transcript=hg002_chrY_paternal_14.9;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.9,hg002_chrY_paternal_14.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000053;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000053;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000053:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1105814	1105816	.	+	0	source_transcript=hg002_chrY_paternal_14.9;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.9,hg002_chrY_paternal_14.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000053;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000053;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000053;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=hg002_chrY_paternal_14.9;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.9,hg002_chrY_paternal_14.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000053;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000053;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000053:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=hg002_chrY_paternal_14.9;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.9,hg002_chrY_paternal_14.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000053;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000053;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000053:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=hg002_chrY_paternal_14.9;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.9,hg002_chrY_paternal_14.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000053;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000053;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000053:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=hg002_chrY_paternal_14.9;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.9,hg002_chrY_paternal_14.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000053;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000053;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000053:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=hg002_chrY_paternal_14.9;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.9,hg002_chrY_paternal_14.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000053;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000053;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000053:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111756	.	+	2	source_transcript=hg002_chrY_paternal_14.9;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.9,hg002_chrY_paternal_14.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000053;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000053;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000053:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=hg002_chrY_paternal_14.9;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.9,hg002_chrY_paternal_14.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000053;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000053;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000053:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=hg002_chrY_paternal_14.9;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.9,hg002_chrY_paternal_14.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000053;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000053;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000053:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1112722	1112751	.	+	0	source_transcript=hg002_chrY_paternal_14.9;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.9,hg002_chrY_paternal_14.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000053;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000053;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000053:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=hg002_chrY_paternal_14.9;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.9,hg002_chrY_paternal_14.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000053;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000053;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000053:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=hg002_chrY_paternal_14.9;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.9,hg002_chrY_paternal_14.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000053;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000053;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000053:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1118926	1119061	.	+	0	source_transcript=hg002_chrY_paternal_14.9;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.9,hg002_chrY_paternal_14.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000053;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000053;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000053:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1122358	.	+	.	source_transcript=hg002_chrY_paternal_14.9;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.9,hg002_chrY_paternal_14.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000053;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000053;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000053:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1122359	1122455	.	+	.	source_transcript=hg002_chrY_paternal_14.9;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.9,hg002_chrY_paternal_14.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000053;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000053;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000053:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1122359	1122455	.	+	2	source_transcript=hg002_chrY_paternal_14.9;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.9,hg002_chrY_paternal_14.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000053;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000053;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000053:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1122456	1123881	.	+	.	source_transcript=hg002_chrY_paternal_14.9;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.9,hg002_chrY_paternal_14.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000053;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000053;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000053:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=hg002_chrY_paternal_14.9;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.9,hg002_chrY_paternal_14.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000053;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000053;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000053:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1123882	1123963	.	+	1	source_transcript=hg002_chrY_paternal_14.9;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.9,hg002_chrY_paternal_14.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000053;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000053;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000053:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1128192	.	+	.	source_transcript=hg002_chrY_paternal_14.9;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.9,hg002_chrY_paternal_14.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000053;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000053;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000053:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1128193	1128726	.	+	.	source_transcript=hg002_chrY_paternal_14.9;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.9,hg002_chrY_paternal_14.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000053;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000053;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000053:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1128193	1128270	.	+	0	source_transcript=hg002_chrY_paternal_14.9;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.9,hg002_chrY_paternal_14.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000053;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000053;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000053:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1128268	1128270	.	+	0	source_transcript=hg002_chrY_paternal_14.9;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.9,hg002_chrY_paternal_14.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000053;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000053;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000053;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083966	1128726	1000	+	.	source_transcript=hg002_chrY_paternal_14.6;source_transcript_name=hg002_chrY_paternal_14.1;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_14.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.6;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.6,hg002_chrY_paternal_14.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000054;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_G0000009;transcript_name=hg002_chrY_paternal_14.1;gene_name=CSF2RA;ID=HG003_chrY_T0000054;Name=CSF2RA
HG003_chrY	CAT	exon	1083966	1084031	.	+	.	source_transcript=hg002_chrY_paternal_14.6;source_transcript_name=hg002_chrY_paternal_14.1;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_14.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.6,hg002_chrY_paternal_14.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000054;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000054;transcript_name=hg002_chrY_paternal_14.1;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000054:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1091734	.	+	.	source_transcript=hg002_chrY_paternal_14.6;source_transcript_name=hg002_chrY_paternal_14.1;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_14.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.6,hg002_chrY_paternal_14.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000054;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000054;transcript_name=hg002_chrY_paternal_14.1;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000054:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1091735	1091822	.	+	.	source_transcript=hg002_chrY_paternal_14.6;source_transcript_name=hg002_chrY_paternal_14.1;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_14.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.6,hg002_chrY_paternal_14.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000054;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000054;transcript_name=hg002_chrY_paternal_14.1;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000054:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1091823	1099694	.	+	.	source_transcript=hg002_chrY_paternal_14.6;source_transcript_name=hg002_chrY_paternal_14.1;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_14.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.6,hg002_chrY_paternal_14.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000054;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000054;transcript_name=hg002_chrY_paternal_14.1;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000054:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=hg002_chrY_paternal_14.6;source_transcript_name=hg002_chrY_paternal_14.1;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_14.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.6,hg002_chrY_paternal_14.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000054;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000054;transcript_name=hg002_chrY_paternal_14.1;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000054:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=hg002_chrY_paternal_14.6;source_transcript_name=hg002_chrY_paternal_14.1;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_14.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.6,hg002_chrY_paternal_14.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000054;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000054;transcript_name=hg002_chrY_paternal_14.1;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000054:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=hg002_chrY_paternal_14.6;source_transcript_name=hg002_chrY_paternal_14.1;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_14.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.6,hg002_chrY_paternal_14.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000054;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000054;transcript_name=hg002_chrY_paternal_14.1;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000054:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=hg002_chrY_paternal_14.6;source_transcript_name=hg002_chrY_paternal_14.1;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_14.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.6,hg002_chrY_paternal_14.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000054;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000054;transcript_name=hg002_chrY_paternal_14.1;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000054:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=hg002_chrY_paternal_14.6;source_transcript_name=hg002_chrY_paternal_14.1;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_14.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.6,hg002_chrY_paternal_14.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000054;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000054;transcript_name=hg002_chrY_paternal_14.1;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000054:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=hg002_chrY_paternal_14.6;source_transcript_name=hg002_chrY_paternal_14.1;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_14.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.6,hg002_chrY_paternal_14.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000054;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000054;transcript_name=hg002_chrY_paternal_14.1;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000054:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=hg002_chrY_paternal_14.6;source_transcript_name=hg002_chrY_paternal_14.1;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_14.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.6,hg002_chrY_paternal_14.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000054;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000054;transcript_name=hg002_chrY_paternal_14.1;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000054:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=hg002_chrY_paternal_14.6;source_transcript_name=hg002_chrY_paternal_14.1;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_14.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.6,hg002_chrY_paternal_14.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000054;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000054;transcript_name=hg002_chrY_paternal_14.1;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000054:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=hg002_chrY_paternal_14.6;source_transcript_name=hg002_chrY_paternal_14.1;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_14.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.6,hg002_chrY_paternal_14.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000054;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000054;transcript_name=hg002_chrY_paternal_14.1;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000054:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=hg002_chrY_paternal_14.6;source_transcript_name=hg002_chrY_paternal_14.1;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_14.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.6,hg002_chrY_paternal_14.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000054;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000054;transcript_name=hg002_chrY_paternal_14.1;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000054:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=hg002_chrY_paternal_14.6;source_transcript_name=hg002_chrY_paternal_14.1;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_14.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.6,hg002_chrY_paternal_14.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000054;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000054;transcript_name=hg002_chrY_paternal_14.1;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000054:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=hg002_chrY_paternal_14.6;source_transcript_name=hg002_chrY_paternal_14.1;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_14.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.6,hg002_chrY_paternal_14.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000054;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000054;transcript_name=hg002_chrY_paternal_14.1;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000054:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=hg002_chrY_paternal_14.6;source_transcript_name=hg002_chrY_paternal_14.1;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_14.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.6,hg002_chrY_paternal_14.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000054;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000054;transcript_name=hg002_chrY_paternal_14.1;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000054:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1122358	.	+	.	source_transcript=hg002_chrY_paternal_14.6;source_transcript_name=hg002_chrY_paternal_14.1;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_14.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.6,hg002_chrY_paternal_14.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000054;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000054;transcript_name=hg002_chrY_paternal_14.1;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000054:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1122359	1122455	.	+	.	source_transcript=hg002_chrY_paternal_14.6;source_transcript_name=hg002_chrY_paternal_14.1;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_14.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.6,hg002_chrY_paternal_14.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000054;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000054;transcript_name=hg002_chrY_paternal_14.1;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000054:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1122456	1123881	.	+	.	source_transcript=hg002_chrY_paternal_14.6;source_transcript_name=hg002_chrY_paternal_14.1;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_14.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.6,hg002_chrY_paternal_14.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000054;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000054;transcript_name=hg002_chrY_paternal_14.1;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000054:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=hg002_chrY_paternal_14.6;source_transcript_name=hg002_chrY_paternal_14.1;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_14.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.6,hg002_chrY_paternal_14.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000054;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000054;transcript_name=hg002_chrY_paternal_14.1;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000054:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1128192	.	+	.	source_transcript=hg002_chrY_paternal_14.6;source_transcript_name=hg002_chrY_paternal_14.1;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_14.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.6,hg002_chrY_paternal_14.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000054;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000054;transcript_name=hg002_chrY_paternal_14.1;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000054:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1128193	1128726	.	+	.	source_transcript=hg002_chrY_paternal_14.6;source_transcript_name=hg002_chrY_paternal_14.1;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_14.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.6,hg002_chrY_paternal_14.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000054;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000054;transcript_name=hg002_chrY_paternal_14.1;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000054:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1099253	1141416	100	+	.	source_transcript=hg002_chrY_paternal_14.37;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.37;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.37;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.37,hg002_chrY_paternal_14.37;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000055;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_G0000009;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=HG003_chrY_T0000055;Name=CSF2RA
HG003_chrY	CAT	exon	1099253	1099577	.	+	.	source_transcript=hg002_chrY_paternal_14.37;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.37;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.37;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.37,hg002_chrY_paternal_14.37;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000055;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000055;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000055:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099578	1099694	.	+	.	source_transcript=hg002_chrY_paternal_14.37;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.37;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.37;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.37,hg002_chrY_paternal_14.37;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000055;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000055;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000055:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=hg002_chrY_paternal_14.37;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.37;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.37;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.37,hg002_chrY_paternal_14.37;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000055;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000055;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000055:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=hg002_chrY_paternal_14.37;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.37;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.37;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.37,hg002_chrY_paternal_14.37;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000055;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000055;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000055:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=hg002_chrY_paternal_14.37;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.37;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.37;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.37,hg002_chrY_paternal_14.37;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000055;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000055;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000055;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=hg002_chrY_paternal_14.37;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.37;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.37;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.37,hg002_chrY_paternal_14.37;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000055;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000055;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000055:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=hg002_chrY_paternal_14.37;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.37;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.37;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.37,hg002_chrY_paternal_14.37;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000055;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000055;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000055:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=hg002_chrY_paternal_14.37;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.37;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.37;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.37,hg002_chrY_paternal_14.37;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000055;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000055;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000055:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=hg002_chrY_paternal_14.37;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.37;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.37;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.37,hg002_chrY_paternal_14.37;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000055;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000055;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000055:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=hg002_chrY_paternal_14.37;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.37;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.37;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.37,hg002_chrY_paternal_14.37;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000055;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000055;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000055:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=hg002_chrY_paternal_14.37;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.37;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.37;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.37,hg002_chrY_paternal_14.37;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000055;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000055;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000055:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=hg002_chrY_paternal_14.37;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.37;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.37;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.37,hg002_chrY_paternal_14.37;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000055;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000055;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000055:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=hg002_chrY_paternal_14.37;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.37;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.37;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.37,hg002_chrY_paternal_14.37;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000055;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000055;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000055:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=hg002_chrY_paternal_14.37;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.37;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.37;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.37,hg002_chrY_paternal_14.37;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000055;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000055;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000055:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=hg002_chrY_paternal_14.37;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.37;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.37;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.37,hg002_chrY_paternal_14.37;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000055;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000055;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000055:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=hg002_chrY_paternal_14.37;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.37;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.37;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.37,hg002_chrY_paternal_14.37;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000055;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000055;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000055:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=hg002_chrY_paternal_14.37;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.37;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.37;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.37,hg002_chrY_paternal_14.37;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000055;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000055;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000055:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=hg002_chrY_paternal_14.37;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.37;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.37;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.37,hg002_chrY_paternal_14.37;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000055;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000055;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000055:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=hg002_chrY_paternal_14.37;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.37;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.37;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.37,hg002_chrY_paternal_14.37;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000055;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000055;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000055:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111756	.	+	2	source_transcript=hg002_chrY_paternal_14.37;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.37;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.37;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.37,hg002_chrY_paternal_14.37;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000055;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000055;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000055:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=hg002_chrY_paternal_14.37;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.37;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.37;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.37,hg002_chrY_paternal_14.37;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000055;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000055;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000055:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=hg002_chrY_paternal_14.37;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.37;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.37;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.37,hg002_chrY_paternal_14.37;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000055;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000055;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000055:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1112722	1112751	.	+	0	source_transcript=hg002_chrY_paternal_14.37;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.37;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.37;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.37,hg002_chrY_paternal_14.37;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000055;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000055;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000055:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=hg002_chrY_paternal_14.37;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.37;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.37;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.37,hg002_chrY_paternal_14.37;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000055;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000055;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000055:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=hg002_chrY_paternal_14.37;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.37;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.37;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.37,hg002_chrY_paternal_14.37;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000055;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000055;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000055:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1118926	1119061	.	+	0	source_transcript=hg002_chrY_paternal_14.37;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.37;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.37;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.37,hg002_chrY_paternal_14.37;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000055;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000055;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000055:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1122358	.	+	.	source_transcript=hg002_chrY_paternal_14.37;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.37;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.37;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.37,hg002_chrY_paternal_14.37;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000055;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000055;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000055:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1122359	1122455	.	+	.	source_transcript=hg002_chrY_paternal_14.37;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.37;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.37;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.37,hg002_chrY_paternal_14.37;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000055;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000055;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000055:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1122359	1122455	.	+	2	source_transcript=hg002_chrY_paternal_14.37;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.37;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.37;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.37,hg002_chrY_paternal_14.37;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000055;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000055;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000055:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1122456	1123881	.	+	.	source_transcript=hg002_chrY_paternal_14.37;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.37;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.37;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.37,hg002_chrY_paternal_14.37;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000055;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000055;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000055:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=hg002_chrY_paternal_14.37;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.37;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.37;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.37,hg002_chrY_paternal_14.37;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000055;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000055;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000055:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1123882	1123963	.	+	1	source_transcript=hg002_chrY_paternal_14.37;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.37;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.37;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.37,hg002_chrY_paternal_14.37;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000055;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000055;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000055:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1141034	.	+	.	source_transcript=hg002_chrY_paternal_14.37;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.37;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.37;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.37,hg002_chrY_paternal_14.37;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000055;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000055;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000055:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1141035	1141057	.	+	.	source_transcript=hg002_chrY_paternal_14.37;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.37;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.37;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.37,hg002_chrY_paternal_14.37;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000055;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000055;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000055:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1141035	1141057	.	+	0	source_transcript=hg002_chrY_paternal_14.37;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.37;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.37;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.37,hg002_chrY_paternal_14.37;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000055;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000055;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000055:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1141058	1141145	.	+	.	source_transcript=hg002_chrY_paternal_14.37;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.37;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.37;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.37,hg002_chrY_paternal_14.37;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000055;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000055;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000055:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1141146	1141416	.	+	.	source_transcript=hg002_chrY_paternal_14.37;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.37;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.37;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.37,hg002_chrY_paternal_14.37;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000055;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000055;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000055:12;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1141146	1141284	.	+	1	source_transcript=hg002_chrY_paternal_14.37;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.37;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.37;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.37,hg002_chrY_paternal_14.37;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000055;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000055;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000055:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1141282	1141284	.	+	0	source_transcript=hg002_chrY_paternal_14.37;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.37;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.37;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.37,hg002_chrY_paternal_14.37;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000055;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000055;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000055;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1099820	1141420	100	+	.	source_transcript=hg002_chrY_paternal_14.38;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.38;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.38;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.38,hg002_chrY_paternal_14.38;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000056;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_G0000009;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=HG003_chrY_T0000056;Name=CSF2RA
HG003_chrY	CAT	exon	1099820	1100059	.	+	.	source_transcript=hg002_chrY_paternal_14.38;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.38;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.38;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.38,hg002_chrY_paternal_14.38;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000056;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000056;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000056:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1100060	1102784	.	+	.	source_transcript=hg002_chrY_paternal_14.38;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.38;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.38;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.38,hg002_chrY_paternal_14.38;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000056;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000056;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000056:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=hg002_chrY_paternal_14.38;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.38;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.38;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.38,hg002_chrY_paternal_14.38;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000056;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000056;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000056:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102841	1102927	.	+	0	source_transcript=hg002_chrY_paternal_14.38;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.38;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.38;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.38,hg002_chrY_paternal_14.38;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000056;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000056;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000056:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1102841	1102843	.	+	0	source_transcript=hg002_chrY_paternal_14.38;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.38;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.38;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.38,hg002_chrY_paternal_14.38;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000056;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000056;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000056;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=hg002_chrY_paternal_14.38;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.38;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.38;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.38,hg002_chrY_paternal_14.38;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000056;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000056;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000056:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=hg002_chrY_paternal_14.38;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.38;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.38;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.38,hg002_chrY_paternal_14.38;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000056;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000056;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000056:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=hg002_chrY_paternal_14.38;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.38;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.38;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.38,hg002_chrY_paternal_14.38;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000056;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000056;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000056:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=hg002_chrY_paternal_14.38;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.38;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.38;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.38,hg002_chrY_paternal_14.38;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000056;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000056;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000056:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=hg002_chrY_paternal_14.38;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.38;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.38;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.38,hg002_chrY_paternal_14.38;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000056;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000056;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000056:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=hg002_chrY_paternal_14.38;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.38;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.38;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.38,hg002_chrY_paternal_14.38;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000056;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000056;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000056:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=hg002_chrY_paternal_14.38;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.38;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.38;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.38,hg002_chrY_paternal_14.38;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000056;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000056;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000056:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=hg002_chrY_paternal_14.38;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.38;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.38;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.38,hg002_chrY_paternal_14.38;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000056;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000056;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000056:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=hg002_chrY_paternal_14.38;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.38;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.38;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.38,hg002_chrY_paternal_14.38;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000056;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000056;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000056:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=hg002_chrY_paternal_14.38;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.38;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.38;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.38,hg002_chrY_paternal_14.38;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000056;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000056;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000056:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=hg002_chrY_paternal_14.38;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.38;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.38;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.38,hg002_chrY_paternal_14.38;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000056;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000056;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000056:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111756	.	+	2	source_transcript=hg002_chrY_paternal_14.38;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.38;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.38;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.38,hg002_chrY_paternal_14.38;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000056;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000056;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000056:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=hg002_chrY_paternal_14.38;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.38;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.38;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.38,hg002_chrY_paternal_14.38;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000056;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000056;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000056:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=hg002_chrY_paternal_14.38;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.38;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.38;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.38,hg002_chrY_paternal_14.38;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000056;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000056;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000056:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1112722	1112751	.	+	0	source_transcript=hg002_chrY_paternal_14.38;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.38;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.38;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.38,hg002_chrY_paternal_14.38;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000056;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000056;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000056:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=hg002_chrY_paternal_14.38;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.38;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.38;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.38,hg002_chrY_paternal_14.38;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000056;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000056;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000056:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=hg002_chrY_paternal_14.38;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.38;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.38;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.38,hg002_chrY_paternal_14.38;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000056;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000056;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000056:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1118926	1119061	.	+	0	source_transcript=hg002_chrY_paternal_14.38;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.38;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.38;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.38,hg002_chrY_paternal_14.38;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000056;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000056;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000056:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1122358	.	+	.	source_transcript=hg002_chrY_paternal_14.38;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.38;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.38;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.38,hg002_chrY_paternal_14.38;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000056;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000056;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000056:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1122359	1122455	.	+	.	source_transcript=hg002_chrY_paternal_14.38;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.38;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.38;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.38,hg002_chrY_paternal_14.38;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000056;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000056;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000056:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1122359	1122455	.	+	2	source_transcript=hg002_chrY_paternal_14.38;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.38;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.38;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.38,hg002_chrY_paternal_14.38;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000056;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000056;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000056:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1122456	1123881	.	+	.	source_transcript=hg002_chrY_paternal_14.38;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.38;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.38;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.38,hg002_chrY_paternal_14.38;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000056;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000056;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000056:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=hg002_chrY_paternal_14.38;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.38;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.38;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.38,hg002_chrY_paternal_14.38;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000056;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000056;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000056:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1123882	1123963	.	+	1	source_transcript=hg002_chrY_paternal_14.38;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.38;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.38;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.38,hg002_chrY_paternal_14.38;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000056;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000056;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000056:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1141034	.	+	.	source_transcript=hg002_chrY_paternal_14.38;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.38;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.38;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.38,hg002_chrY_paternal_14.38;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000056;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000056;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000056:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1141035	1141057	.	+	.	source_transcript=hg002_chrY_paternal_14.38;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.38;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.38;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.38,hg002_chrY_paternal_14.38;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000056;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000056;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000056:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1141035	1141057	.	+	0	source_transcript=hg002_chrY_paternal_14.38;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.38;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.38;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.38,hg002_chrY_paternal_14.38;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000056;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000056;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000056:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1141058	1141145	.	+	.	source_transcript=hg002_chrY_paternal_14.38;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.38;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.38;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.38,hg002_chrY_paternal_14.38;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000056;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000056;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000056:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1141146	1141420	.	+	.	source_transcript=hg002_chrY_paternal_14.38;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.38;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.38;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.38,hg002_chrY_paternal_14.38;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000056;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000056;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000056:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1141146	1141284	.	+	1	source_transcript=hg002_chrY_paternal_14.38;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.38;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.38;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.38,hg002_chrY_paternal_14.38;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000056;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000056;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000056:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1141282	1141284	.	+	0	source_transcript=hg002_chrY_paternal_14.38;source_transcript_name=hg002_chrY_paternal_14.38;source_gene=hg002_chrY_paternal_14;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_14.38;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_14.38;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=hg002_chrY_paternal_14.38,hg002_chrY_paternal_14.38;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000056;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000056;transcript_name=hg002_chrY_paternal_14.38;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000056;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	1110536	1110988	.	-	.	source_gene_common_name=LOC124905238;source_gene=hg002_chrY_paternal_15;alternative_source_transcripts=hg002_chrY_paternal_15.1;gene_id=HG003_chrY_G0000010;gene_biotype=lncRNA;gene_name=LOC124905238;gene_sources=liftoff,transMap;ID=HG003_chrY_G0000010;Name=LOC124905238
HG003_chrY	CAT	transcript	1110536	1110988	1000	-	.	source_transcript=hg002_chrY_paternal_15.1;source_transcript_name=hg002_chrY_paternal_15.1;source_gene=hg002_chrY_paternal_15;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_15;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_15.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_15.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905238;alternative_source_transcripts=hg002_chrY_paternal_15.1;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000057;gene_id=HG003_chrY_G0000010;Parent=HG003_chrY_G0000010;transcript_name=hg002_chrY_paternal_15.1;gene_name=LOC124905238;ID=HG003_chrY_T0000057;Name=LOC124905238
HG003_chrY	CAT	exon	1110536	1110572	.	-	.	source_transcript=hg002_chrY_paternal_15.1;source_transcript_name=hg002_chrY_paternal_15.1;source_gene=hg002_chrY_paternal_15;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_15;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_15.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_15.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905238;alternative_source_transcripts=hg002_chrY_paternal_15.1;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000057;gene_id=HG003_chrY_G0000010;Parent=HG003_chrY_T0000057;transcript_name=hg002_chrY_paternal_15.1;gene_name=LOC124905238;ID=exon:HG003_chrY_T0000057:0;Name=LOC124905238;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1110573	1110832	.	-	.	source_transcript=hg002_chrY_paternal_15.1;source_transcript_name=hg002_chrY_paternal_15.1;source_gene=hg002_chrY_paternal_15;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_15;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_15.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_15.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905238;alternative_source_transcripts=hg002_chrY_paternal_15.1;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000057;gene_id=HG003_chrY_G0000010;Parent=HG003_chrY_T0000057;transcript_name=hg002_chrY_paternal_15.1;gene_name=LOC124905238;ID=intron:HG003_chrY_T0000057:0;Name=LOC124905238;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1110833	1110988	.	-	.	source_transcript=hg002_chrY_paternal_15.1;source_transcript_name=hg002_chrY_paternal_15.1;source_gene=hg002_chrY_paternal_15;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_15;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_15.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_15.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905238;alternative_source_transcripts=hg002_chrY_paternal_15.1;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000057;gene_id=HG003_chrY_G0000010;Parent=HG003_chrY_T0000057;transcript_name=hg002_chrY_paternal_15.1;gene_name=LOC124905238;ID=exon:HG003_chrY_T0000057:1;Name=LOC124905238;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	1110605	1110636	.	+	.	source_gene_common_name=MIR3690;source_gene=hg002_chrY_paternal_16;alternative_source_transcripts=hg002_chrY_paternal_16.1,hg002_chrY_paternal_16.1;gene_id=HG003_chrY_G0000011;gene_biotype=miRNA;gene_name=MIR3690;gene_sources=liftoff;ID=HG003_chrY_G0000011;Name=MIR3690
HG003_chrY	CAT	transcript	1110605	1110679	1000	+	.	source_transcript=hg002_chrY_paternal_16.1;source_transcript_name=hg002_chrY_paternal_16.1;source_gene=hg002_chrY_paternal_16;source_gene_biotype=miRNA;original_gene_id=hg002_chrY_paternal_16;gene_biotype=miRNA;transcript_biotype=primary_transcript;alignment_id=hg002_chrY_paternal_16.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_16.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MIR3690;alternative_source_transcripts=hg002_chrY_paternal_16.1,hg002_chrY_paternal_16.1;transcript_id=HG003_chrY_T0000058;gene_id=HG003_chrY_G0000011;Parent=HG003_chrY_G0000011;transcript_name=hg002_chrY_paternal_16.1;gene_name=MIR3690;ID=HG003_chrY_T0000058;Name=MIR3690
HG003_chrY	CAT	exon	1110605	1110679	.	+	.	source_transcript=hg002_chrY_paternal_16.1;source_transcript_name=hg002_chrY_paternal_16.1;source_gene=hg002_chrY_paternal_16;source_gene_biotype=miRNA;original_gene_id=hg002_chrY_paternal_16;gene_biotype=miRNA;transcript_biotype=primary_transcript;alignment_id=hg002_chrY_paternal_16.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_16.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MIR3690;alternative_source_transcripts=hg002_chrY_paternal_16.1,hg002_chrY_paternal_16.1;transcript_id=HG003_chrY_T0000058;gene_id=HG003_chrY_G0000011;Parent=HG003_chrY_T0000058;transcript_name=hg002_chrY_paternal_16.1;gene_name=MIR3690;ID=exon:HG003_chrY_T0000058:0;Name=MIR3690;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1110614	1110636	1000	+	.	source_transcript=hg002_chrY_paternal_16.2;source_transcript_name=hg002_chrY_paternal_16.1;source_gene=hg002_chrY_paternal_16;source_gene_biotype=miRNA;original_gene_id=hg002_chrY_paternal_16;gene_biotype=miRNA;transcript_biotype=miRNA;alignment_id=hg002_chrY_paternal_16.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_16.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MIR3690;alternative_source_transcripts=hg002_chrY_paternal_16.2,hg002_chrY_paternal_16.2;transcript_id=HG003_chrY_T0000059;gene_id=HG003_chrY_G0000011;Parent=HG003_chrY_G0000011;transcript_name=hg002_chrY_paternal_16.1;gene_name=MIR3690;ID=HG003_chrY_T0000059;Name=MIR3690
HG003_chrY	CAT	exon	1110614	1110636	.	+	.	source_transcript=hg002_chrY_paternal_16.2;source_transcript_name=hg002_chrY_paternal_16.1;source_gene=hg002_chrY_paternal_16;source_gene_biotype=miRNA;original_gene_id=hg002_chrY_paternal_16;gene_biotype=miRNA;transcript_biotype=miRNA;alignment_id=hg002_chrY_paternal_16.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_16.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MIR3690;alternative_source_transcripts=hg002_chrY_paternal_16.2,hg002_chrY_paternal_16.2;transcript_id=HG003_chrY_T0000059;gene_id=HG003_chrY_G0000011;Parent=HG003_chrY_T0000059;transcript_name=hg002_chrY_paternal_16.1;gene_name=MIR3690;ID=exon:HG003_chrY_T0000059:0;Name=MIR3690;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	1110908	1110939	.	+	.	source_gene_common_name=MIR3690;source_gene=hg002_chrY_paternal_17;alternative_source_transcripts=hg002_chrY_paternal_17.1,hg002_chrY_paternal_17.1;gene_id=HG003_chrY_G0000012;gene_biotype=miRNA;gene_name=MIR3690;gene_sources=liftoff;ID=HG003_chrY_G0000012;Name=MIR3690
HG003_chrY	CAT	transcript	1110908	1110982	1000	+	.	source_transcript=hg002_chrY_paternal_17.1;source_transcript_name=hg002_chrY_paternal_17.1;source_gene=hg002_chrY_paternal_17;source_gene_biotype=miRNA;original_gene_id=hg002_chrY_paternal_17;gene_biotype=miRNA;transcript_biotype=primary_transcript;alignment_id=hg002_chrY_paternal_17.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_17.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MIR3690;alternative_source_transcripts=hg002_chrY_paternal_17.1,hg002_chrY_paternal_17.1;transcript_id=HG003_chrY_T0000060;gene_id=HG003_chrY_G0000012;Parent=HG003_chrY_G0000012;transcript_name=hg002_chrY_paternal_17.1;gene_name=MIR3690;ID=HG003_chrY_T0000060;Name=MIR3690
HG003_chrY	CAT	exon	1110908	1110982	.	+	.	source_transcript=hg002_chrY_paternal_17.1;source_transcript_name=hg002_chrY_paternal_17.1;source_gene=hg002_chrY_paternal_17;source_gene_biotype=miRNA;original_gene_id=hg002_chrY_paternal_17;gene_biotype=miRNA;transcript_biotype=primary_transcript;alignment_id=hg002_chrY_paternal_17.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_17.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MIR3690;alternative_source_transcripts=hg002_chrY_paternal_17.1,hg002_chrY_paternal_17.1;transcript_id=HG003_chrY_T0000060;gene_id=HG003_chrY_G0000012;Parent=HG003_chrY_T0000060;transcript_name=hg002_chrY_paternal_17.1;gene_name=MIR3690;ID=exon:HG003_chrY_T0000060:0;Name=MIR3690;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1110917	1110939	1000	+	.	source_transcript=hg002_chrY_paternal_17.2;source_transcript_name=hg002_chrY_paternal_17.1;source_gene=hg002_chrY_paternal_17;source_gene_biotype=miRNA;original_gene_id=hg002_chrY_paternal_17;gene_biotype=miRNA;transcript_biotype=miRNA;alignment_id=hg002_chrY_paternal_17.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_17.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MIR3690;alternative_source_transcripts=hg002_chrY_paternal_17.2,hg002_chrY_paternal_17.2;transcript_id=HG003_chrY_T0000061;gene_id=HG003_chrY_G0000012;Parent=HG003_chrY_G0000012;transcript_name=hg002_chrY_paternal_17.1;gene_name=MIR3690;ID=HG003_chrY_T0000061;Name=MIR3690
HG003_chrY	CAT	exon	1110917	1110939	.	+	.	source_transcript=hg002_chrY_paternal_17.2;source_transcript_name=hg002_chrY_paternal_17.1;source_gene=hg002_chrY_paternal_17;source_gene_biotype=miRNA;original_gene_id=hg002_chrY_paternal_17;gene_biotype=miRNA;transcript_biotype=miRNA;alignment_id=hg002_chrY_paternal_17.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_17.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MIR3690;alternative_source_transcripts=hg002_chrY_paternal_17.2,hg002_chrY_paternal_17.2;transcript_id=HG003_chrY_T0000061;gene_id=HG003_chrY_G0000012;Parent=HG003_chrY_T0000061;transcript_name=hg002_chrY_paternal_17.1;gene_name=MIR3690;ID=exon:HG003_chrY_T0000061:0;Name=MIR3690;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	1111211	1111242	.	+	.	source_gene_common_name=MIR3690;source_gene=hg002_chrY_paternal_18;alternative_source_transcripts=hg002_chrY_paternal_18.1,hg002_chrY_paternal_18.1;gene_id=HG003_chrY_G0000013;gene_biotype=miRNA;gene_name=MIR3690;gene_sources=liftoff;ID=HG003_chrY_G0000013;Name=MIR3690
HG003_chrY	CAT	transcript	1111211	1111285	1000	+	.	source_transcript=hg002_chrY_paternal_18.1;source_transcript_name=hg002_chrY_paternal_18.1;source_gene=hg002_chrY_paternal_18;source_gene_biotype=miRNA;original_gene_id=hg002_chrY_paternal_18;gene_biotype=miRNA;transcript_biotype=primary_transcript;alignment_id=hg002_chrY_paternal_18.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_18.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MIR3690;alternative_source_transcripts=hg002_chrY_paternal_18.1,hg002_chrY_paternal_18.1;transcript_id=HG003_chrY_T0000062;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_G0000013;transcript_name=hg002_chrY_paternal_18.1;gene_name=MIR3690;ID=HG003_chrY_T0000062;Name=MIR3690
HG003_chrY	CAT	exon	1111211	1111285	.	+	.	source_transcript=hg002_chrY_paternal_18.1;source_transcript_name=hg002_chrY_paternal_18.1;source_gene=hg002_chrY_paternal_18;source_gene_biotype=miRNA;original_gene_id=hg002_chrY_paternal_18;gene_biotype=miRNA;transcript_biotype=primary_transcript;alignment_id=hg002_chrY_paternal_18.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_18.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MIR3690;alternative_source_transcripts=hg002_chrY_paternal_18.1,hg002_chrY_paternal_18.1;transcript_id=HG003_chrY_T0000062;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000062;transcript_name=hg002_chrY_paternal_18.1;gene_name=MIR3690;ID=exon:HG003_chrY_T0000062:0;Name=MIR3690;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1111220	1111242	1000	+	.	source_transcript=hg002_chrY_paternal_18.2;source_transcript_name=hg002_chrY_paternal_18.1;source_gene=hg002_chrY_paternal_18;source_gene_biotype=miRNA;original_gene_id=hg002_chrY_paternal_18;gene_biotype=miRNA;transcript_biotype=miRNA;alignment_id=hg002_chrY_paternal_18.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_18.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MIR3690;alternative_source_transcripts=hg002_chrY_paternal_18.2,hg002_chrY_paternal_18.2;transcript_id=HG003_chrY_T0000063;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_G0000013;transcript_name=hg002_chrY_paternal_18.1;gene_name=MIR3690;ID=HG003_chrY_T0000063;Name=MIR3690
HG003_chrY	CAT	exon	1111220	1111242	.	+	.	source_transcript=hg002_chrY_paternal_18.2;source_transcript_name=hg002_chrY_paternal_18.1;source_gene=hg002_chrY_paternal_18;source_gene_biotype=miRNA;original_gene_id=hg002_chrY_paternal_18;gene_biotype=miRNA;transcript_biotype=miRNA;alignment_id=hg002_chrY_paternal_18.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_18.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MIR3690;alternative_source_transcripts=hg002_chrY_paternal_18.2,hg002_chrY_paternal_18.2;transcript_id=HG003_chrY_T0000063;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000063;transcript_name=hg002_chrY_paternal_18.1;gene_name=MIR3690;ID=exon:HG003_chrY_T0000063:0;Name=MIR3690;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	1156096	1200962	.	+	.	source_gene_common_name=IL3RA;source_gene=hg002_chrY_paternal_20;alternative_source_transcripts=hg002_chrY_paternal_20.1,hg002_chrY_paternal_20.1;gene_id=HG003_chrY_G0000014;gene_biotype=protein_coding;gene_name=IL3RA;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000014;Name=IL3RA
HG003_chrY	CAT	transcript	1156096	1200962	100	+	.	source_transcript=hg002_chrY_paternal_20.1;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.1,hg002_chrY_paternal_20.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_G0000014;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=HG003_chrY_T0000064;Name=IL3RA
HG003_chrY	CAT	exon	1156096	1156237	.	+	.	source_transcript=hg002_chrY_paternal_20.1;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.1,hg002_chrY_paternal_20.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000064;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000064:0;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1156238	1161035	.	+	.	source_transcript=hg002_chrY_paternal_20.1;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.1,hg002_chrY_paternal_20.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000064;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000064:0;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1161036	1161137	.	+	.	source_transcript=hg002_chrY_paternal_20.1;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.1,hg002_chrY_paternal_20.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000064;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000064:1;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1161074	1161137	.	+	0	source_transcript=hg002_chrY_paternal_20.1;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.1,hg002_chrY_paternal_20.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000064;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000064:0;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1161074	1161076	.	+	0	source_transcript=hg002_chrY_paternal_20.1;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.1,hg002_chrY_paternal_20.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000064;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=start_codon:HG003_chrY_T0000064;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1161138	1171422	.	+	.	source_transcript=hg002_chrY_paternal_20.1;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.1,hg002_chrY_paternal_20.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000064;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000064:1;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1171423	1171555	.	+	.	source_transcript=hg002_chrY_paternal_20.1;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.1,hg002_chrY_paternal_20.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000064;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000064:2;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1171423	1171555	.	+	2	source_transcript=hg002_chrY_paternal_20.1;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.1,hg002_chrY_paternal_20.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000064;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000064:1;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1171556	1171644	.	+	.	source_transcript=hg002_chrY_paternal_20.1;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.1,hg002_chrY_paternal_20.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000064;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000064:2;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1171645	1171829	.	+	.	source_transcript=hg002_chrY_paternal_20.1;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.1,hg002_chrY_paternal_20.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000064;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000064:3;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1171645	1171829	.	+	1	source_transcript=hg002_chrY_paternal_20.1;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.1,hg002_chrY_paternal_20.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000064;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000064:2;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1171830	1175457	.	+	.	source_transcript=hg002_chrY_paternal_20.1;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.1,hg002_chrY_paternal_20.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000064;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000064:3;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1175458	1175573	.	+	.	source_transcript=hg002_chrY_paternal_20.1;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.1,hg002_chrY_paternal_20.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000064;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000064:4;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1175458	1175573	.	+	2	source_transcript=hg002_chrY_paternal_20.1;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.1,hg002_chrY_paternal_20.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000064;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000064:3;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1175574	1178096	.	+	.	source_transcript=hg002_chrY_paternal_20.1;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.1,hg002_chrY_paternal_20.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000064;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000064:4;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1178097	1178123	.	+	.	source_transcript=hg002_chrY_paternal_20.1;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.1,hg002_chrY_paternal_20.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000064;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000064:5;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1178097	1178123	.	+	0	source_transcript=hg002_chrY_paternal_20.1;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.1,hg002_chrY_paternal_20.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000064;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000064:4;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1178124	1184416	.	+	.	source_transcript=hg002_chrY_paternal_20.1;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.1,hg002_chrY_paternal_20.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000064;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000064:5;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1184417	1184531	.	+	.	source_transcript=hg002_chrY_paternal_20.1;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.1,hg002_chrY_paternal_20.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000064;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000064:6;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1184417	1184531	.	+	0	source_transcript=hg002_chrY_paternal_20.1;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.1,hg002_chrY_paternal_20.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000064;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000064:5;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1184532	1196833	.	+	.	source_transcript=hg002_chrY_paternal_20.1;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.1,hg002_chrY_paternal_20.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000064;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000064:6;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1196834	1196939	.	+	.	source_transcript=hg002_chrY_paternal_20.1;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.1,hg002_chrY_paternal_20.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000064;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000064:7;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1196834	1196939	.	+	2	source_transcript=hg002_chrY_paternal_20.1;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.1,hg002_chrY_paternal_20.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000064;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000064:6;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1196940	1199216	.	+	.	source_transcript=hg002_chrY_paternal_20.1;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.1,hg002_chrY_paternal_20.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000064;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000064:7;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1199217	1199298	.	+	.	source_transcript=hg002_chrY_paternal_20.1;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.1,hg002_chrY_paternal_20.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000064;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000064:8;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1199217	1199298	.	+	1	source_transcript=hg002_chrY_paternal_20.1;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.1,hg002_chrY_paternal_20.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000064;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000064:7;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1199299	1200662	.	+	.	source_transcript=hg002_chrY_paternal_20.1;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.1,hg002_chrY_paternal_20.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000064;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000064:8;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1200663	1200962	.	+	.	source_transcript=hg002_chrY_paternal_20.1;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.1,hg002_chrY_paternal_20.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000064;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000064:9;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1200663	1200737	.	+	0	source_transcript=hg002_chrY_paternal_20.1;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.1,hg002_chrY_paternal_20.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000064;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000064:8;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1200735	1200737	.	+	0	source_transcript=hg002_chrY_paternal_20.1;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.1,hg002_chrY_paternal_20.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000064;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=stop_codon:HG003_chrY_T0000064;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1156096	1200962	100	+	.	source_transcript=hg002_chrY_paternal_20.2;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000065;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_G0000014;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=HG003_chrY_T0000065;Name=IL3RA
HG003_chrY	CAT	exon	1156096	1156237	.	+	.	source_transcript=hg002_chrY_paternal_20.2;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000065;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000065;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000065:0;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1156238	1161035	.	+	.	source_transcript=hg002_chrY_paternal_20.2;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000065;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000065;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000065:0;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1161036	1161137	.	+	.	source_transcript=hg002_chrY_paternal_20.2;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000065;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000065;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000065:1;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1161074	1161137	.	+	0	source_transcript=hg002_chrY_paternal_20.2;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000065;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000065;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000065:0;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1161074	1161076	.	+	0	source_transcript=hg002_chrY_paternal_20.2;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000065;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000065;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=start_codon:HG003_chrY_T0000065;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1161138	1164627	.	+	.	source_transcript=hg002_chrY_paternal_20.2;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000065;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000065;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000065:1;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1164628	1164746	.	+	.	source_transcript=hg002_chrY_paternal_20.2;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000065;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000065;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000065:2;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1164628	1164746	.	+	2	source_transcript=hg002_chrY_paternal_20.2;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000065;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000065;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000065:1;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1164747	1167745	.	+	.	source_transcript=hg002_chrY_paternal_20.2;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000065;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000065;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000065:2;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1167746	1167860	.	+	.	source_transcript=hg002_chrY_paternal_20.2;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000065;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000065;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000065:3;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1167746	1167860	.	+	0	source_transcript=hg002_chrY_paternal_20.2;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000065;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000065;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000065:2;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1167861	1171422	.	+	.	source_transcript=hg002_chrY_paternal_20.2;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000065;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000065;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000065:3;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1171423	1171555	.	+	.	source_transcript=hg002_chrY_paternal_20.2;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000065;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000065;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000065:4;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1171423	1171555	.	+	2	source_transcript=hg002_chrY_paternal_20.2;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000065;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000065;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000065:3;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1171556	1171644	.	+	.	source_transcript=hg002_chrY_paternal_20.2;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000065;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000065;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000065:4;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1171645	1171829	.	+	.	source_transcript=hg002_chrY_paternal_20.2;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000065;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000065;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000065:5;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1171645	1171829	.	+	1	source_transcript=hg002_chrY_paternal_20.2;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000065;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000065;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000065:4;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1171830	1175457	.	+	.	source_transcript=hg002_chrY_paternal_20.2;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000065;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000065;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000065:5;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1175458	1175573	.	+	.	source_transcript=hg002_chrY_paternal_20.2;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000065;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000065;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000065:6;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1175458	1175573	.	+	2	source_transcript=hg002_chrY_paternal_20.2;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000065;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000065;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000065:5;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1175574	1178096	.	+	.	source_transcript=hg002_chrY_paternal_20.2;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000065;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000065;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000065:6;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1178097	1178123	.	+	.	source_transcript=hg002_chrY_paternal_20.2;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000065;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000065;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000065:7;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1178097	1178123	.	+	0	source_transcript=hg002_chrY_paternal_20.2;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000065;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000065;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000065:6;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1178124	1184416	.	+	.	source_transcript=hg002_chrY_paternal_20.2;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000065;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000065;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000065:7;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1184417	1184531	.	+	.	source_transcript=hg002_chrY_paternal_20.2;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000065;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000065;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000065:8;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1184417	1184531	.	+	0	source_transcript=hg002_chrY_paternal_20.2;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000065;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000065;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000065:7;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1184532	1196833	.	+	.	source_transcript=hg002_chrY_paternal_20.2;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000065;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000065;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000065:8;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1196834	1196939	.	+	.	source_transcript=hg002_chrY_paternal_20.2;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000065;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000065;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000065:9;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1196834	1196939	.	+	2	source_transcript=hg002_chrY_paternal_20.2;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000065;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000065;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000065:8;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1196940	1199216	.	+	.	source_transcript=hg002_chrY_paternal_20.2;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000065;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000065;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000065:9;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1199217	1199298	.	+	.	source_transcript=hg002_chrY_paternal_20.2;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000065;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000065;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000065:10;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1199217	1199298	.	+	1	source_transcript=hg002_chrY_paternal_20.2;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000065;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000065;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000065:9;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1199299	1200662	.	+	.	source_transcript=hg002_chrY_paternal_20.2;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000065;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000065;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000065:10;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1200663	1200962	.	+	.	source_transcript=hg002_chrY_paternal_20.2;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000065;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000065;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000065:11;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1200663	1200737	.	+	0	source_transcript=hg002_chrY_paternal_20.2;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000065;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000065;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000065:10;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1200735	1200737	.	+	0	source_transcript=hg002_chrY_paternal_20.2;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000065;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000065;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=stop_codon:HG003_chrY_T0000065;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1156096	1200962	100	+	.	source_transcript=hg002_chrY_paternal_20.3;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000066;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_G0000014;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=HG003_chrY_T0000066;Name=IL3RA
HG003_chrY	CAT	exon	1156096	1156237	.	+	.	source_transcript=hg002_chrY_paternal_20.3;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000066;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000066;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000066:0;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1156238	1161038	.	+	.	source_transcript=hg002_chrY_paternal_20.3;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000066;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000066;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000066:0;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1161039	1161137	.	+	.	source_transcript=hg002_chrY_paternal_20.3;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000066;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000066;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000066:1;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1161074	1161137	.	+	0	source_transcript=hg002_chrY_paternal_20.3;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000066;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000066;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000066:0;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1161074	1161076	.	+	0	source_transcript=hg002_chrY_paternal_20.3;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000066;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000066;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=start_codon:HG003_chrY_T0000066;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1161138	1164627	.	+	.	source_transcript=hg002_chrY_paternal_20.3;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000066;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000066;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000066:1;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1164628	1164746	.	+	.	source_transcript=hg002_chrY_paternal_20.3;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000066;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000066;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000066:2;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1164628	1164746	.	+	2	source_transcript=hg002_chrY_paternal_20.3;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000066;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000066;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000066:1;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1164747	1167745	.	+	.	source_transcript=hg002_chrY_paternal_20.3;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000066;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000066;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000066:2;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1167746	1167860	.	+	.	source_transcript=hg002_chrY_paternal_20.3;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000066;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000066;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000066:3;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1167746	1167860	.	+	0	source_transcript=hg002_chrY_paternal_20.3;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000066;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000066;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000066:2;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1167861	1171422	.	+	.	source_transcript=hg002_chrY_paternal_20.3;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000066;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000066;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000066:3;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1171423	1171555	.	+	.	source_transcript=hg002_chrY_paternal_20.3;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000066;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000066;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000066:4;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1171423	1171555	.	+	2	source_transcript=hg002_chrY_paternal_20.3;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000066;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000066;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000066:3;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1171556	1171644	.	+	.	source_transcript=hg002_chrY_paternal_20.3;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000066;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000066;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000066:4;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1171645	1171829	.	+	.	source_transcript=hg002_chrY_paternal_20.3;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000066;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000066;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000066:5;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1171645	1171829	.	+	1	source_transcript=hg002_chrY_paternal_20.3;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000066;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000066;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000066:4;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1171830	1175457	.	+	.	source_transcript=hg002_chrY_paternal_20.3;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000066;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000066;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000066:5;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1175458	1175573	.	+	.	source_transcript=hg002_chrY_paternal_20.3;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000066;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000066;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000066:6;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1175458	1175573	.	+	2	source_transcript=hg002_chrY_paternal_20.3;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000066;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000066;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000066:5;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1175574	1178096	.	+	.	source_transcript=hg002_chrY_paternal_20.3;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000066;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000066;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000066:6;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1178097	1178123	.	+	.	source_transcript=hg002_chrY_paternal_20.3;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000066;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000066;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000066:7;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1178097	1178123	.	+	0	source_transcript=hg002_chrY_paternal_20.3;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000066;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000066;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000066:6;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1178124	1184416	.	+	.	source_transcript=hg002_chrY_paternal_20.3;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000066;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000066;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000066:7;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1184417	1184531	.	+	.	source_transcript=hg002_chrY_paternal_20.3;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000066;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000066;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000066:8;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1184417	1184531	.	+	0	source_transcript=hg002_chrY_paternal_20.3;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000066;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000066;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000066:7;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1184532	1196833	.	+	.	source_transcript=hg002_chrY_paternal_20.3;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000066;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000066;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000066:8;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1196834	1196939	.	+	.	source_transcript=hg002_chrY_paternal_20.3;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000066;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000066;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000066:9;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1196834	1196939	.	+	2	source_transcript=hg002_chrY_paternal_20.3;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000066;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000066;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000066:8;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1196940	1199216	.	+	.	source_transcript=hg002_chrY_paternal_20.3;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000066;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000066;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000066:9;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1199217	1199298	.	+	.	source_transcript=hg002_chrY_paternal_20.3;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000066;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000066;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000066:10;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1199217	1199298	.	+	1	source_transcript=hg002_chrY_paternal_20.3;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000066;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000066;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000066:9;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1199299	1200662	.	+	.	source_transcript=hg002_chrY_paternal_20.3;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000066;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000066;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000066:10;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1200663	1200962	.	+	.	source_transcript=hg002_chrY_paternal_20.3;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000066;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000066;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000066:11;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1200663	1200737	.	+	0	source_transcript=hg002_chrY_paternal_20.3;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000066;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000066;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000066:10;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1200735	1200737	.	+	0	source_transcript=hg002_chrY_paternal_20.3;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000066;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000066;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=stop_codon:HG003_chrY_T0000066;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1156096	1200962	100	+	.	source_transcript=hg002_chrY_paternal_20.4;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000067;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_G0000014;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=HG003_chrY_T0000067;Name=IL3RA
HG003_chrY	CAT	exon	1156096	1156237	.	+	.	source_transcript=hg002_chrY_paternal_20.4;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000067;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000067;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000067:0;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1156238	1161035	.	+	.	source_transcript=hg002_chrY_paternal_20.4;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000067;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000067;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000067:0;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1161036	1161137	.	+	.	source_transcript=hg002_chrY_paternal_20.4;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000067;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000067;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000067:1;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1161074	1161137	.	+	0	source_transcript=hg002_chrY_paternal_20.4;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000067;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000067;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000067:0;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1161074	1161076	.	+	0	source_transcript=hg002_chrY_paternal_20.4;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000067;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000067;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=start_codon:HG003_chrY_T0000067;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1161138	1164627	.	+	.	source_transcript=hg002_chrY_paternal_20.4;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000067;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000067;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000067:1;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1164628	1164746	.	+	.	source_transcript=hg002_chrY_paternal_20.4;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000067;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000067;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000067:2;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1164628	1164746	.	+	2	source_transcript=hg002_chrY_paternal_20.4;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000067;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000067;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000067:1;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1164747	1167745	.	+	.	source_transcript=hg002_chrY_paternal_20.4;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000067;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000067;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000067:2;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1167746	1167860	.	+	.	source_transcript=hg002_chrY_paternal_20.4;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000067;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000067;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000067:3;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1167746	1167860	.	+	0	source_transcript=hg002_chrY_paternal_20.4;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000067;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000067;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000067:2;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1167861	1171422	.	+	.	source_transcript=hg002_chrY_paternal_20.4;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000067;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000067;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000067:3;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1171423	1171555	.	+	.	source_transcript=hg002_chrY_paternal_20.4;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000067;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000067;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000067:4;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1171423	1171555	.	+	2	source_transcript=hg002_chrY_paternal_20.4;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000067;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000067;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000067:3;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1171556	1171647	.	+	.	source_transcript=hg002_chrY_paternal_20.4;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000067;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000067;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000067:4;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1171648	1171829	.	+	.	source_transcript=hg002_chrY_paternal_20.4;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000067;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000067;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000067:5;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1171648	1171829	.	+	1	source_transcript=hg002_chrY_paternal_20.4;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000067;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000067;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000067:4;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1171830	1175457	.	+	.	source_transcript=hg002_chrY_paternal_20.4;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000067;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000067;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000067:5;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1175458	1175573	.	+	.	source_transcript=hg002_chrY_paternal_20.4;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000067;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000067;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000067:6;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1175458	1175573	.	+	2	source_transcript=hg002_chrY_paternal_20.4;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000067;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000067;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000067:5;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1175574	1178096	.	+	.	source_transcript=hg002_chrY_paternal_20.4;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000067;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000067;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000067:6;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1178097	1178123	.	+	.	source_transcript=hg002_chrY_paternal_20.4;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000067;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000067;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000067:7;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1178097	1178123	.	+	0	source_transcript=hg002_chrY_paternal_20.4;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000067;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000067;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000067:6;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1178124	1184416	.	+	.	source_transcript=hg002_chrY_paternal_20.4;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000067;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000067;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000067:7;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1184417	1184531	.	+	.	source_transcript=hg002_chrY_paternal_20.4;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000067;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000067;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000067:8;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1184417	1184531	.	+	0	source_transcript=hg002_chrY_paternal_20.4;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000067;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000067;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000067:7;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1184532	1196833	.	+	.	source_transcript=hg002_chrY_paternal_20.4;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000067;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000067;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000067:8;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1196834	1196939	.	+	.	source_transcript=hg002_chrY_paternal_20.4;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000067;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000067;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000067:9;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1196834	1196939	.	+	2	source_transcript=hg002_chrY_paternal_20.4;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000067;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000067;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000067:8;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1196940	1199216	.	+	.	source_transcript=hg002_chrY_paternal_20.4;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000067;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000067;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000067:9;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1199217	1199298	.	+	.	source_transcript=hg002_chrY_paternal_20.4;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000067;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000067;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000067:10;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1199217	1199298	.	+	1	source_transcript=hg002_chrY_paternal_20.4;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000067;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000067;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000067:9;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1199299	1200662	.	+	.	source_transcript=hg002_chrY_paternal_20.4;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000067;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000067;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000067:10;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1200663	1200962	.	+	.	source_transcript=hg002_chrY_paternal_20.4;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000067;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000067;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000067:11;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1200663	1200737	.	+	0	source_transcript=hg002_chrY_paternal_20.4;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000067;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000067;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000067:10;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1200735	1200737	.	+	0	source_transcript=hg002_chrY_paternal_20.4;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000067;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000067;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=stop_codon:HG003_chrY_T0000067;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1156096	1200962	100	+	.	source_transcript=hg002_chrY_paternal_20.5;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000068;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_G0000014;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=HG003_chrY_T0000068;Name=IL3RA
HG003_chrY	CAT	exon	1156096	1156237	.	+	.	source_transcript=hg002_chrY_paternal_20.5;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000068;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000068;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000068:0;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1156238	1161038	.	+	.	source_transcript=hg002_chrY_paternal_20.5;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000068;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000068;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000068:0;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1161039	1161137	.	+	.	source_transcript=hg002_chrY_paternal_20.5;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000068;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000068;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000068:1;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1161074	1161137	.	+	0	source_transcript=hg002_chrY_paternal_20.5;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000068;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000068;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000068:0;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1161074	1161076	.	+	0	source_transcript=hg002_chrY_paternal_20.5;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000068;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000068;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=start_codon:HG003_chrY_T0000068;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1161138	1164627	.	+	.	source_transcript=hg002_chrY_paternal_20.5;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000068;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000068;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000068:1;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1164628	1164746	.	+	.	source_transcript=hg002_chrY_paternal_20.5;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000068;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000068;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000068:2;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1164628	1164746	.	+	2	source_transcript=hg002_chrY_paternal_20.5;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000068;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000068;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000068:1;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1164747	1167745	.	+	.	source_transcript=hg002_chrY_paternal_20.5;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000068;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000068;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000068:2;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1167746	1167860	.	+	.	source_transcript=hg002_chrY_paternal_20.5;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000068;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000068;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000068:3;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1167746	1167860	.	+	0	source_transcript=hg002_chrY_paternal_20.5;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000068;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000068;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000068:2;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1167861	1171422	.	+	.	source_transcript=hg002_chrY_paternal_20.5;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000068;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000068;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000068:3;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1171423	1171555	.	+	.	source_transcript=hg002_chrY_paternal_20.5;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000068;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000068;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000068:4;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1171423	1171555	.	+	2	source_transcript=hg002_chrY_paternal_20.5;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000068;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000068;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000068:3;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1171556	1171647	.	+	.	source_transcript=hg002_chrY_paternal_20.5;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000068;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000068;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000068:4;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1171648	1171829	.	+	.	source_transcript=hg002_chrY_paternal_20.5;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000068;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000068;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000068:5;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1171648	1171829	.	+	1	source_transcript=hg002_chrY_paternal_20.5;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000068;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000068;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000068:4;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1171830	1175457	.	+	.	source_transcript=hg002_chrY_paternal_20.5;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000068;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000068;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000068:5;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1175458	1175573	.	+	.	source_transcript=hg002_chrY_paternal_20.5;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000068;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000068;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000068:6;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1175458	1175573	.	+	2	source_transcript=hg002_chrY_paternal_20.5;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000068;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000068;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000068:5;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1175574	1178096	.	+	.	source_transcript=hg002_chrY_paternal_20.5;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000068;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000068;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000068:6;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1178097	1178123	.	+	.	source_transcript=hg002_chrY_paternal_20.5;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000068;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000068;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000068:7;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1178097	1178123	.	+	0	source_transcript=hg002_chrY_paternal_20.5;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000068;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000068;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000068:6;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1178124	1184416	.	+	.	source_transcript=hg002_chrY_paternal_20.5;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000068;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000068;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000068:7;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1184417	1184531	.	+	.	source_transcript=hg002_chrY_paternal_20.5;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000068;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000068;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000068:8;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1184417	1184531	.	+	0	source_transcript=hg002_chrY_paternal_20.5;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000068;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000068;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000068:7;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1184532	1196833	.	+	.	source_transcript=hg002_chrY_paternal_20.5;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000068;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000068;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000068:8;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1196834	1196939	.	+	.	source_transcript=hg002_chrY_paternal_20.5;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000068;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000068;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000068:9;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1196834	1196939	.	+	2	source_transcript=hg002_chrY_paternal_20.5;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000068;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000068;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000068:8;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1196940	1199216	.	+	.	source_transcript=hg002_chrY_paternal_20.5;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000068;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000068;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000068:9;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1199217	1199298	.	+	.	source_transcript=hg002_chrY_paternal_20.5;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000068;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000068;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000068:10;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1199217	1199298	.	+	1	source_transcript=hg002_chrY_paternal_20.5;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000068;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000068;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000068:9;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1199299	1200662	.	+	.	source_transcript=hg002_chrY_paternal_20.5;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000068;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000068;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000068:10;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1200663	1200962	.	+	.	source_transcript=hg002_chrY_paternal_20.5;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000068;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000068;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000068:11;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1200663	1200737	.	+	0	source_transcript=hg002_chrY_paternal_20.5;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000068;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000068;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000068:10;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1200735	1200737	.	+	0	source_transcript=hg002_chrY_paternal_20.5;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000068;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000068;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=stop_codon:HG003_chrY_T0000068;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1160890	1200962	100	+	.	source_transcript=hg002_chrY_paternal_20.6;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.6,hg002_chrY_paternal_20.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_G0000014;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=HG003_chrY_T0000070;Name=IL3RA
HG003_chrY	CAT	exon	1160890	1161137	.	+	.	source_transcript=hg002_chrY_paternal_20.6;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.6,hg002_chrY_paternal_20.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000070;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000070:0;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1160894	1161137	.	+	0	source_transcript=hg002_chrY_paternal_20.6;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.6,hg002_chrY_paternal_20.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000070;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000070:0;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1160894	1160896	.	+	0	source_transcript=hg002_chrY_paternal_20.6;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.6,hg002_chrY_paternal_20.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000070;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=start_codon:HG003_chrY_T0000070;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1161138	1164627	.	+	.	source_transcript=hg002_chrY_paternal_20.6;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.6,hg002_chrY_paternal_20.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000070;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000070:0;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1164628	1164746	.	+	.	source_transcript=hg002_chrY_paternal_20.6;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.6,hg002_chrY_paternal_20.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000070;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000070:1;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1164628	1164746	.	+	2	source_transcript=hg002_chrY_paternal_20.6;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.6,hg002_chrY_paternal_20.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000070;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000070:1;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1164747	1167745	.	+	.	source_transcript=hg002_chrY_paternal_20.6;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.6,hg002_chrY_paternal_20.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000070;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000070:1;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1167746	1167860	.	+	.	source_transcript=hg002_chrY_paternal_20.6;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.6,hg002_chrY_paternal_20.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000070;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000070:2;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1167746	1167860	.	+	0	source_transcript=hg002_chrY_paternal_20.6;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.6,hg002_chrY_paternal_20.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000070;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000070:2;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1167861	1171422	.	+	.	source_transcript=hg002_chrY_paternal_20.6;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.6,hg002_chrY_paternal_20.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000070;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000070:2;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1171423	1171555	.	+	.	source_transcript=hg002_chrY_paternal_20.6;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.6,hg002_chrY_paternal_20.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000070;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000070:3;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1171423	1171555	.	+	2	source_transcript=hg002_chrY_paternal_20.6;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.6,hg002_chrY_paternal_20.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000070;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000070:3;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1171556	1171644	.	+	.	source_transcript=hg002_chrY_paternal_20.6;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.6,hg002_chrY_paternal_20.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000070;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000070:3;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1171645	1171829	.	+	.	source_transcript=hg002_chrY_paternal_20.6;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.6,hg002_chrY_paternal_20.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000070;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000070:4;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1171645	1171829	.	+	1	source_transcript=hg002_chrY_paternal_20.6;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.6,hg002_chrY_paternal_20.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000070;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000070:4;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1171830	1175457	.	+	.	source_transcript=hg002_chrY_paternal_20.6;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.6,hg002_chrY_paternal_20.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000070;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000070:4;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1175458	1175573	.	+	.	source_transcript=hg002_chrY_paternal_20.6;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.6,hg002_chrY_paternal_20.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000070;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000070:5;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1175458	1175573	.	+	2	source_transcript=hg002_chrY_paternal_20.6;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.6,hg002_chrY_paternal_20.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000070;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000070:5;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1175574	1178096	.	+	.	source_transcript=hg002_chrY_paternal_20.6;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.6,hg002_chrY_paternal_20.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000070;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000070:5;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1178097	1178123	.	+	.	source_transcript=hg002_chrY_paternal_20.6;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.6,hg002_chrY_paternal_20.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000070;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000070:6;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1178097	1178123	.	+	0	source_transcript=hg002_chrY_paternal_20.6;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.6,hg002_chrY_paternal_20.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000070;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000070:6;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1178124	1184416	.	+	.	source_transcript=hg002_chrY_paternal_20.6;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.6,hg002_chrY_paternal_20.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000070;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000070:6;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1184417	1184531	.	+	.	source_transcript=hg002_chrY_paternal_20.6;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.6,hg002_chrY_paternal_20.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000070;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000070:7;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1184417	1184531	.	+	0	source_transcript=hg002_chrY_paternal_20.6;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.6,hg002_chrY_paternal_20.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000070;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000070:7;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1184532	1196833	.	+	.	source_transcript=hg002_chrY_paternal_20.6;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.6,hg002_chrY_paternal_20.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000070;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000070:7;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1196834	1196939	.	+	.	source_transcript=hg002_chrY_paternal_20.6;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.6,hg002_chrY_paternal_20.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000070;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000070:8;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1196834	1196939	.	+	2	source_transcript=hg002_chrY_paternal_20.6;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.6,hg002_chrY_paternal_20.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000070;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000070:8;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1196940	1199216	.	+	.	source_transcript=hg002_chrY_paternal_20.6;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.6,hg002_chrY_paternal_20.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000070;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000070:8;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1199217	1199298	.	+	.	source_transcript=hg002_chrY_paternal_20.6;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.6,hg002_chrY_paternal_20.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000070;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000070:9;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1199217	1199298	.	+	1	source_transcript=hg002_chrY_paternal_20.6;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.6,hg002_chrY_paternal_20.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000070;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000070:9;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1199299	1200662	.	+	.	source_transcript=hg002_chrY_paternal_20.6;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.6,hg002_chrY_paternal_20.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000070;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000070:9;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1200663	1200962	.	+	.	source_transcript=hg002_chrY_paternal_20.6;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.6,hg002_chrY_paternal_20.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000070;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000070:10;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1200663	1200737	.	+	0	source_transcript=hg002_chrY_paternal_20.6;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.6,hg002_chrY_paternal_20.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000070;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000070:10;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1200735	1200737	.	+	0	source_transcript=hg002_chrY_paternal_20.6;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.6,hg002_chrY_paternal_20.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000070;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=stop_codon:HG003_chrY_T0000070;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1160890	1200962	100	+	.	source_transcript=hg002_chrY_paternal_20.7;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.7;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.7,hg002_chrY_paternal_20.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_G0000014;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=HG003_chrY_T0000071;Name=IL3RA
HG003_chrY	CAT	exon	1160890	1161137	.	+	.	source_transcript=hg002_chrY_paternal_20.7;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.7,hg002_chrY_paternal_20.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000071;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000071:0;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1160894	1161137	.	+	0	source_transcript=hg002_chrY_paternal_20.7;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.7,hg002_chrY_paternal_20.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000071;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000071:0;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1160894	1160896	.	+	0	source_transcript=hg002_chrY_paternal_20.7;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.7,hg002_chrY_paternal_20.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000071;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=start_codon:HG003_chrY_T0000071;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1161138	1164627	.	+	.	source_transcript=hg002_chrY_paternal_20.7;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.7,hg002_chrY_paternal_20.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000071;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000071:0;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1164628	1164746	.	+	.	source_transcript=hg002_chrY_paternal_20.7;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.7,hg002_chrY_paternal_20.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000071;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000071:1;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1164628	1164746	.	+	2	source_transcript=hg002_chrY_paternal_20.7;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.7,hg002_chrY_paternal_20.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000071;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000071:1;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1164747	1167745	.	+	.	source_transcript=hg002_chrY_paternal_20.7;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.7,hg002_chrY_paternal_20.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000071;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000071:1;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1167746	1167860	.	+	.	source_transcript=hg002_chrY_paternal_20.7;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.7,hg002_chrY_paternal_20.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000071;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000071:2;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1167746	1167860	.	+	0	source_transcript=hg002_chrY_paternal_20.7;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.7,hg002_chrY_paternal_20.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000071;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000071:2;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1167861	1171422	.	+	.	source_transcript=hg002_chrY_paternal_20.7;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.7,hg002_chrY_paternal_20.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000071;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000071:2;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1171423	1171555	.	+	.	source_transcript=hg002_chrY_paternal_20.7;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.7,hg002_chrY_paternal_20.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000071;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000071:3;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1171423	1171555	.	+	2	source_transcript=hg002_chrY_paternal_20.7;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.7,hg002_chrY_paternal_20.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000071;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000071:3;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1171556	1171647	.	+	.	source_transcript=hg002_chrY_paternal_20.7;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.7,hg002_chrY_paternal_20.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000071;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000071:3;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1171648	1171829	.	+	.	source_transcript=hg002_chrY_paternal_20.7;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.7,hg002_chrY_paternal_20.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000071;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000071:4;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1171648	1171829	.	+	1	source_transcript=hg002_chrY_paternal_20.7;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.7,hg002_chrY_paternal_20.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000071;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000071:4;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1171830	1175457	.	+	.	source_transcript=hg002_chrY_paternal_20.7;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.7,hg002_chrY_paternal_20.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000071;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000071:4;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1175458	1175573	.	+	.	source_transcript=hg002_chrY_paternal_20.7;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.7,hg002_chrY_paternal_20.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000071;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000071:5;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1175458	1175573	.	+	2	source_transcript=hg002_chrY_paternal_20.7;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.7,hg002_chrY_paternal_20.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000071;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000071:5;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1175574	1178096	.	+	.	source_transcript=hg002_chrY_paternal_20.7;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.7,hg002_chrY_paternal_20.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000071;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000071:5;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1178097	1178123	.	+	.	source_transcript=hg002_chrY_paternal_20.7;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.7,hg002_chrY_paternal_20.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000071;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000071:6;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1178097	1178123	.	+	0	source_transcript=hg002_chrY_paternal_20.7;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.7,hg002_chrY_paternal_20.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000071;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000071:6;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1178124	1184416	.	+	.	source_transcript=hg002_chrY_paternal_20.7;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.7,hg002_chrY_paternal_20.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000071;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000071:6;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1184417	1184531	.	+	.	source_transcript=hg002_chrY_paternal_20.7;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.7,hg002_chrY_paternal_20.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000071;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000071:7;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1184417	1184531	.	+	0	source_transcript=hg002_chrY_paternal_20.7;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.7,hg002_chrY_paternal_20.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000071;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000071:7;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1184532	1196833	.	+	.	source_transcript=hg002_chrY_paternal_20.7;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.7,hg002_chrY_paternal_20.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000071;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000071:7;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1196834	1196939	.	+	.	source_transcript=hg002_chrY_paternal_20.7;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.7,hg002_chrY_paternal_20.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000071;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000071:8;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1196834	1196939	.	+	2	source_transcript=hg002_chrY_paternal_20.7;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.7,hg002_chrY_paternal_20.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000071;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000071:8;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1196940	1199216	.	+	.	source_transcript=hg002_chrY_paternal_20.7;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.7,hg002_chrY_paternal_20.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000071;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000071:8;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1199217	1199298	.	+	.	source_transcript=hg002_chrY_paternal_20.7;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.7,hg002_chrY_paternal_20.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000071;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000071:9;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1199217	1199298	.	+	1	source_transcript=hg002_chrY_paternal_20.7;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.7,hg002_chrY_paternal_20.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000071;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000071:9;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1199299	1200662	.	+	.	source_transcript=hg002_chrY_paternal_20.7;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.7,hg002_chrY_paternal_20.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000071;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:HG003_chrY_T0000071:9;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1200663	1200962	.	+	.	source_transcript=hg002_chrY_paternal_20.7;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.7,hg002_chrY_paternal_20.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000071;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:HG003_chrY_T0000071:10;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1200663	1200737	.	+	0	source_transcript=hg002_chrY_paternal_20.7;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.7,hg002_chrY_paternal_20.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000071;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000071:10;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1200735	1200737	.	+	0	source_transcript=hg002_chrY_paternal_20.7;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_20.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.7,hg002_chrY_paternal_20.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000071;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=stop_codon:HG003_chrY_T0000071;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	1156885	1196651	.	-	.	source_gene_common_name=LOC101928032;source_gene=hg002_chrY_paternal_21;alternative_source_transcripts=hg002_chrY_paternal_21.11;gene_id=HG003_chrY_G0000015;gene_biotype=lncRNA;gene_name=LOC101928032;gene_sources=liftoff,transMap;ID=HG003_chrY_G0000015;Name=LOC101928032
HG003_chrY	CAT	transcript	1156885	1196651	1000	-	.	source_transcript=hg002_chrY_paternal_21.11;source_transcript_name=hg002_chrY_paternal_21.1;source_gene=hg002_chrY_paternal_21;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_21;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_21.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_21.11;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928032;alternative_source_transcripts=hg002_chrY_paternal_21.11;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000069;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_G0000015;transcript_name=hg002_chrY_paternal_21.1;gene_name=LOC101928032;ID=HG003_chrY_T0000069;Name=LOC101928032
HG003_chrY	CAT	exon	1156885	1158100	.	-	.	source_transcript=hg002_chrY_paternal_21.11;source_transcript_name=hg002_chrY_paternal_21.1;source_gene=hg002_chrY_paternal_21;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_21;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_21.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_21.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928032;alternative_source_transcripts=hg002_chrY_paternal_21.11;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000069;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_T0000069;transcript_name=hg002_chrY_paternal_21.1;gene_name=LOC101928032;ID=exon:HG003_chrY_T0000069:0;Name=LOC101928032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1158101	1160905	.	-	.	source_transcript=hg002_chrY_paternal_21.11;source_transcript_name=hg002_chrY_paternal_21.1;source_gene=hg002_chrY_paternal_21;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_21;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_21.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_21.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928032;alternative_source_transcripts=hg002_chrY_paternal_21.11;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000069;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_T0000069;transcript_name=hg002_chrY_paternal_21.1;gene_name=LOC101928032;ID=intron:HG003_chrY_T0000069:0;Name=LOC101928032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1160906	1161121	.	-	.	source_transcript=hg002_chrY_paternal_21.11;source_transcript_name=hg002_chrY_paternal_21.1;source_gene=hg002_chrY_paternal_21;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_21;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_21.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_21.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928032;alternative_source_transcripts=hg002_chrY_paternal_21.11;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000069;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_T0000069;transcript_name=hg002_chrY_paternal_21.1;gene_name=LOC101928032;ID=exon:HG003_chrY_T0000069:1;Name=LOC101928032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1161122	1171632	.	-	.	source_transcript=hg002_chrY_paternal_21.11;source_transcript_name=hg002_chrY_paternal_21.1;source_gene=hg002_chrY_paternal_21;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_21;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_21.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_21.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928032;alternative_source_transcripts=hg002_chrY_paternal_21.11;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000069;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_T0000069;transcript_name=hg002_chrY_paternal_21.1;gene_name=LOC101928032;ID=intron:HG003_chrY_T0000069:1;Name=LOC101928032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1171633	1172041	.	-	.	source_transcript=hg002_chrY_paternal_21.11;source_transcript_name=hg002_chrY_paternal_21.1;source_gene=hg002_chrY_paternal_21;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_21;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_21.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_21.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928032;alternative_source_transcripts=hg002_chrY_paternal_21.11;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000069;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_T0000069;transcript_name=hg002_chrY_paternal_21.1;gene_name=LOC101928032;ID=exon:HG003_chrY_T0000069:2;Name=LOC101928032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1172042	1174808	.	-	.	source_transcript=hg002_chrY_paternal_21.11;source_transcript_name=hg002_chrY_paternal_21.1;source_gene=hg002_chrY_paternal_21;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_21;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_21.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_21.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928032;alternative_source_transcripts=hg002_chrY_paternal_21.11;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000069;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_T0000069;transcript_name=hg002_chrY_paternal_21.1;gene_name=LOC101928032;ID=intron:HG003_chrY_T0000069:2;Name=LOC101928032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1174809	1175377	.	-	.	source_transcript=hg002_chrY_paternal_21.11;source_transcript_name=hg002_chrY_paternal_21.1;source_gene=hg002_chrY_paternal_21;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_21;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_21.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_21.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928032;alternative_source_transcripts=hg002_chrY_paternal_21.11;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000069;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_T0000069;transcript_name=hg002_chrY_paternal_21.1;gene_name=LOC101928032;ID=exon:HG003_chrY_T0000069:3;Name=LOC101928032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1175378	1180638	.	-	.	source_transcript=hg002_chrY_paternal_21.11;source_transcript_name=hg002_chrY_paternal_21.1;source_gene=hg002_chrY_paternal_21;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_21;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_21.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_21.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928032;alternative_source_transcripts=hg002_chrY_paternal_21.11;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000069;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_T0000069;transcript_name=hg002_chrY_paternal_21.1;gene_name=LOC101928032;ID=intron:HG003_chrY_T0000069:3;Name=LOC101928032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1180639	1181017	.	-	.	source_transcript=hg002_chrY_paternal_21.11;source_transcript_name=hg002_chrY_paternal_21.1;source_gene=hg002_chrY_paternal_21;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_21;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_21.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_21.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928032;alternative_source_transcripts=hg002_chrY_paternal_21.11;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000069;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_T0000069;transcript_name=hg002_chrY_paternal_21.1;gene_name=LOC101928032;ID=exon:HG003_chrY_T0000069:4;Name=LOC101928032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1181018	1184381	.	-	.	source_transcript=hg002_chrY_paternal_21.11;source_transcript_name=hg002_chrY_paternal_21.1;source_gene=hg002_chrY_paternal_21;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_21;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_21.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_21.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928032;alternative_source_transcripts=hg002_chrY_paternal_21.11;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000069;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_T0000069;transcript_name=hg002_chrY_paternal_21.1;gene_name=LOC101928032;ID=intron:HG003_chrY_T0000069:4;Name=LOC101928032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1184382	1184450	.	-	.	source_transcript=hg002_chrY_paternal_21.11;source_transcript_name=hg002_chrY_paternal_21.1;source_gene=hg002_chrY_paternal_21;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_21;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_21.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_21.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928032;alternative_source_transcripts=hg002_chrY_paternal_21.11;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000069;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_T0000069;transcript_name=hg002_chrY_paternal_21.1;gene_name=LOC101928032;ID=exon:HG003_chrY_T0000069:5;Name=LOC101928032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1184451	1187299	.	-	.	source_transcript=hg002_chrY_paternal_21.11;source_transcript_name=hg002_chrY_paternal_21.1;source_gene=hg002_chrY_paternal_21;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_21;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_21.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_21.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928032;alternative_source_transcripts=hg002_chrY_paternal_21.11;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000069;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_T0000069;transcript_name=hg002_chrY_paternal_21.1;gene_name=LOC101928032;ID=intron:HG003_chrY_T0000069:5;Name=LOC101928032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1187300	1187434	.	-	.	source_transcript=hg002_chrY_paternal_21.11;source_transcript_name=hg002_chrY_paternal_21.1;source_gene=hg002_chrY_paternal_21;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_21;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_21.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_21.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928032;alternative_source_transcripts=hg002_chrY_paternal_21.11;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000069;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_T0000069;transcript_name=hg002_chrY_paternal_21.1;gene_name=LOC101928032;ID=exon:HG003_chrY_T0000069:6;Name=LOC101928032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1187435	1196496	.	-	.	source_transcript=hg002_chrY_paternal_21.11;source_transcript_name=hg002_chrY_paternal_21.1;source_gene=hg002_chrY_paternal_21;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_21;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_21.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_21.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928032;alternative_source_transcripts=hg002_chrY_paternal_21.11;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000069;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_T0000069;transcript_name=hg002_chrY_paternal_21.1;gene_name=LOC101928032;ID=intron:HG003_chrY_T0000069:6;Name=LOC101928032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1196497	1196651	.	-	.	source_transcript=hg002_chrY_paternal_21.11;source_transcript_name=hg002_chrY_paternal_21.1;source_gene=hg002_chrY_paternal_21;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_21;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_21.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_21.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928032;alternative_source_transcripts=hg002_chrY_paternal_21.11;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000069;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_T0000069;transcript_name=hg002_chrY_paternal_21.1;gene_name=LOC101928032;ID=exon:HG003_chrY_T0000069:7;Name=LOC101928032;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1170089	1196651	1000	-	.	source_transcript=hg002_chrY_paternal_21.16;source_transcript_name=hg002_chrY_paternal_21.1;source_gene=hg002_chrY_paternal_21;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_21;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_21.16;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_21.16;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928032;alternative_source_transcripts=hg002_chrY_paternal_21.16;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_G0000015;transcript_name=hg002_chrY_paternal_21.1;gene_name=LOC101928032;ID=HG003_chrY_T0000072;Name=LOC101928032
HG003_chrY	CAT	exon	1170089	1170175	.	-	.	source_transcript=hg002_chrY_paternal_21.16;source_transcript_name=hg002_chrY_paternal_21.1;source_gene=hg002_chrY_paternal_21;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_21;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_21.16;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_21.16;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928032;alternative_source_transcripts=hg002_chrY_paternal_21.16;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_T0000072;transcript_name=hg002_chrY_paternal_21.1;gene_name=LOC101928032;ID=exon:HG003_chrY_T0000072:0;Name=LOC101928032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1170176	1171632	.	-	.	source_transcript=hg002_chrY_paternal_21.16;source_transcript_name=hg002_chrY_paternal_21.1;source_gene=hg002_chrY_paternal_21;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_21;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_21.16;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_21.16;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928032;alternative_source_transcripts=hg002_chrY_paternal_21.16;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_T0000072;transcript_name=hg002_chrY_paternal_21.1;gene_name=LOC101928032;ID=intron:HG003_chrY_T0000072:0;Name=LOC101928032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1171633	1172041	.	-	.	source_transcript=hg002_chrY_paternal_21.16;source_transcript_name=hg002_chrY_paternal_21.1;source_gene=hg002_chrY_paternal_21;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_21;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_21.16;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_21.16;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928032;alternative_source_transcripts=hg002_chrY_paternal_21.16;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_T0000072;transcript_name=hg002_chrY_paternal_21.1;gene_name=LOC101928032;ID=exon:HG003_chrY_T0000072:1;Name=LOC101928032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1172042	1174808	.	-	.	source_transcript=hg002_chrY_paternal_21.16;source_transcript_name=hg002_chrY_paternal_21.1;source_gene=hg002_chrY_paternal_21;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_21;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_21.16;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_21.16;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928032;alternative_source_transcripts=hg002_chrY_paternal_21.16;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_T0000072;transcript_name=hg002_chrY_paternal_21.1;gene_name=LOC101928032;ID=intron:HG003_chrY_T0000072:1;Name=LOC101928032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1174809	1175377	.	-	.	source_transcript=hg002_chrY_paternal_21.16;source_transcript_name=hg002_chrY_paternal_21.1;source_gene=hg002_chrY_paternal_21;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_21;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_21.16;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_21.16;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928032;alternative_source_transcripts=hg002_chrY_paternal_21.16;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_T0000072;transcript_name=hg002_chrY_paternal_21.1;gene_name=LOC101928032;ID=exon:HG003_chrY_T0000072:2;Name=LOC101928032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1175378	1184381	.	-	.	source_transcript=hg002_chrY_paternal_21.16;source_transcript_name=hg002_chrY_paternal_21.1;source_gene=hg002_chrY_paternal_21;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_21;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_21.16;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_21.16;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928032;alternative_source_transcripts=hg002_chrY_paternal_21.16;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_T0000072;transcript_name=hg002_chrY_paternal_21.1;gene_name=LOC101928032;ID=intron:HG003_chrY_T0000072:2;Name=LOC101928032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1184382	1184450	.	-	.	source_transcript=hg002_chrY_paternal_21.16;source_transcript_name=hg002_chrY_paternal_21.1;source_gene=hg002_chrY_paternal_21;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_21;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_21.16;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_21.16;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928032;alternative_source_transcripts=hg002_chrY_paternal_21.16;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_T0000072;transcript_name=hg002_chrY_paternal_21.1;gene_name=LOC101928032;ID=exon:HG003_chrY_T0000072:3;Name=LOC101928032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1184451	1187299	.	-	.	source_transcript=hg002_chrY_paternal_21.16;source_transcript_name=hg002_chrY_paternal_21.1;source_gene=hg002_chrY_paternal_21;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_21;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_21.16;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_21.16;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928032;alternative_source_transcripts=hg002_chrY_paternal_21.16;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_T0000072;transcript_name=hg002_chrY_paternal_21.1;gene_name=LOC101928032;ID=intron:HG003_chrY_T0000072:3;Name=LOC101928032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1187300	1187434	.	-	.	source_transcript=hg002_chrY_paternal_21.16;source_transcript_name=hg002_chrY_paternal_21.1;source_gene=hg002_chrY_paternal_21;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_21;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_21.16;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_21.16;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928032;alternative_source_transcripts=hg002_chrY_paternal_21.16;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_T0000072;transcript_name=hg002_chrY_paternal_21.1;gene_name=LOC101928032;ID=exon:HG003_chrY_T0000072:4;Name=LOC101928032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1187435	1196496	.	-	.	source_transcript=hg002_chrY_paternal_21.16;source_transcript_name=hg002_chrY_paternal_21.1;source_gene=hg002_chrY_paternal_21;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_21;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_21.16;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_21.16;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928032;alternative_source_transcripts=hg002_chrY_paternal_21.16;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_T0000072;transcript_name=hg002_chrY_paternal_21.1;gene_name=LOC101928032;ID=intron:HG003_chrY_T0000072:4;Name=LOC101928032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1196497	1196651	.	-	.	source_transcript=hg002_chrY_paternal_21.16;source_transcript_name=hg002_chrY_paternal_21.1;source_gene=hg002_chrY_paternal_21;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_21;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_21.16;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_21.16;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928032;alternative_source_transcripts=hg002_chrY_paternal_21.16;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_T0000072;transcript_name=hg002_chrY_paternal_21.1;gene_name=LOC101928032;ID=exon:HG003_chrY_T0000072:5;Name=LOC101928032;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	1204419	1210499	.	-	.	source_gene_common_name=SLC25A6;source_gene=hg002_chrY_paternal_22;alternative_source_transcripts=hg002_chrY_paternal_22.1,hg002_chrY_paternal_22.1;gene_id=HG003_chrY_G0000016;gene_biotype=protein_coding;gene_name=SLC25A6;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000016;Name=SLC25A6
HG003_chrY	CAT	transcript	1204419	1210499	100	-	.	source_transcript=hg002_chrY_paternal_22.1;source_transcript_name=hg002_chrY_paternal_22.1;source_gene=hg002_chrY_paternal_22;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_22;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_22.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_22.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=hg002_chrY_paternal_22.1,hg002_chrY_paternal_22.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000016;Parent=HG003_chrY_G0000016;transcript_name=hg002_chrY_paternal_22.1;gene_name=SLC25A6;ID=HG003_chrY_T0000073;Name=SLC25A6
HG003_chrY	CAT	exon	1204419	1205026	.	-	.	source_transcript=hg002_chrY_paternal_22.1;source_transcript_name=hg002_chrY_paternal_22.1;source_gene=hg002_chrY_paternal_22;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_22;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_22.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_22.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=hg002_chrY_paternal_22.1,hg002_chrY_paternal_22.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000016;Parent=HG003_chrY_T0000073;transcript_name=hg002_chrY_paternal_22.1;gene_name=SLC25A6;ID=exon:HG003_chrY_T0000073:0;Name=SLC25A6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1204869	1205026	.	-	2	source_transcript=hg002_chrY_paternal_22.1;source_transcript_name=hg002_chrY_paternal_22.1;source_gene=hg002_chrY_paternal_22;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_22;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_22.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_22.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=hg002_chrY_paternal_22.1,hg002_chrY_paternal_22.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000016;Parent=HG003_chrY_T0000073;transcript_name=hg002_chrY_paternal_22.1;gene_name=SLC25A6;ID=CDS:HG003_chrY_T0000073:0;Name=SLC25A6;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1204869	1204871	.	-	0	source_transcript=hg002_chrY_paternal_22.1;source_transcript_name=hg002_chrY_paternal_22.1;source_gene=hg002_chrY_paternal_22;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_22;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_22.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_22.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=hg002_chrY_paternal_22.1,hg002_chrY_paternal_22.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000016;Parent=HG003_chrY_T0000073;transcript_name=hg002_chrY_paternal_22.1;gene_name=SLC25A6;ID=stop_codon:HG003_chrY_T0000073;Name=SLC25A6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1205027	1205545	.	-	.	source_transcript=hg002_chrY_paternal_22.1;source_transcript_name=hg002_chrY_paternal_22.1;source_gene=hg002_chrY_paternal_22;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_22;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_22.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_22.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=hg002_chrY_paternal_22.1,hg002_chrY_paternal_22.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000016;Parent=HG003_chrY_T0000073;transcript_name=hg002_chrY_paternal_22.1;gene_name=SLC25A6;ID=intron:HG003_chrY_T0000073:0;Name=SLC25A6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1205546	1205686	.	-	.	source_transcript=hg002_chrY_paternal_22.1;source_transcript_name=hg002_chrY_paternal_22.1;source_gene=hg002_chrY_paternal_22;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_22;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_22.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_22.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=hg002_chrY_paternal_22.1,hg002_chrY_paternal_22.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000016;Parent=HG003_chrY_T0000073;transcript_name=hg002_chrY_paternal_22.1;gene_name=SLC25A6;ID=exon:HG003_chrY_T0000073:1;Name=SLC25A6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1205546	1205686	.	-	2	source_transcript=hg002_chrY_paternal_22.1;source_transcript_name=hg002_chrY_paternal_22.1;source_gene=hg002_chrY_paternal_22;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_22;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_22.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_22.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=hg002_chrY_paternal_22.1,hg002_chrY_paternal_22.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000016;Parent=HG003_chrY_T0000073;transcript_name=hg002_chrY_paternal_22.1;gene_name=SLC25A6;ID=CDS:HG003_chrY_T0000073:1;Name=SLC25A6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1205687	1207507	.	-	.	source_transcript=hg002_chrY_paternal_22.1;source_transcript_name=hg002_chrY_paternal_22.1;source_gene=hg002_chrY_paternal_22;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_22;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_22.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_22.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=hg002_chrY_paternal_22.1,hg002_chrY_paternal_22.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000016;Parent=HG003_chrY_T0000073;transcript_name=hg002_chrY_paternal_22.1;gene_name=SLC25A6;ID=intron:HG003_chrY_T0000073:1;Name=SLC25A6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1207508	1207994	.	-	.	source_transcript=hg002_chrY_paternal_22.1;source_transcript_name=hg002_chrY_paternal_22.1;source_gene=hg002_chrY_paternal_22;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_22;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_22.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_22.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=hg002_chrY_paternal_22.1,hg002_chrY_paternal_22.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000016;Parent=HG003_chrY_T0000073;transcript_name=hg002_chrY_paternal_22.1;gene_name=SLC25A6;ID=exon:HG003_chrY_T0000073:2;Name=SLC25A6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1207508	1207994	.	-	0	source_transcript=hg002_chrY_paternal_22.1;source_transcript_name=hg002_chrY_paternal_22.1;source_gene=hg002_chrY_paternal_22;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_22;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_22.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_22.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=hg002_chrY_paternal_22.1,hg002_chrY_paternal_22.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000016;Parent=HG003_chrY_T0000073;transcript_name=hg002_chrY_paternal_22.1;gene_name=SLC25A6;ID=CDS:HG003_chrY_T0000073:2;Name=SLC25A6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1207995	1210284	.	-	.	source_transcript=hg002_chrY_paternal_22.1;source_transcript_name=hg002_chrY_paternal_22.1;source_gene=hg002_chrY_paternal_22;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_22;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_22.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_22.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=hg002_chrY_paternal_22.1,hg002_chrY_paternal_22.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000016;Parent=HG003_chrY_T0000073;transcript_name=hg002_chrY_paternal_22.1;gene_name=SLC25A6;ID=intron:HG003_chrY_T0000073:2;Name=SLC25A6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1210285	1210499	.	-	.	source_transcript=hg002_chrY_paternal_22.1;source_transcript_name=hg002_chrY_paternal_22.1;source_gene=hg002_chrY_paternal_22;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_22;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_22.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_22.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=hg002_chrY_paternal_22.1,hg002_chrY_paternal_22.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000016;Parent=HG003_chrY_T0000073;transcript_name=hg002_chrY_paternal_22.1;gene_name=SLC25A6;ID=exon:HG003_chrY_T0000073:3;Name=SLC25A6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1210285	1210395	.	-	0	source_transcript=hg002_chrY_paternal_22.1;source_transcript_name=hg002_chrY_paternal_22.1;source_gene=hg002_chrY_paternal_22;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_22;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_22.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_22.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=hg002_chrY_paternal_22.1,hg002_chrY_paternal_22.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000016;Parent=HG003_chrY_T0000073;transcript_name=hg002_chrY_paternal_22.1;gene_name=SLC25A6;ID=CDS:HG003_chrY_T0000073:3;Name=SLC25A6;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1210393	1210395	.	-	0	source_transcript=hg002_chrY_paternal_22.1;source_transcript_name=hg002_chrY_paternal_22.1;source_gene=hg002_chrY_paternal_22;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_22;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_22.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_22.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=hg002_chrY_paternal_22.1,hg002_chrY_paternal_22.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000016;Parent=HG003_chrY_T0000073;transcript_name=hg002_chrY_paternal_22.1;gene_name=SLC25A6;ID=start_codon:HG003_chrY_T0000073;Name=SLC25A6;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	1210379	1215287	.	+	.	source_gene_common_name=LOC105373102;source_gene=hg002_chrY_paternal_23;alternative_source_transcripts=hg002_chrY_paternal_23.1,hg002_chrY_paternal_23.1;gene_id=HG003_chrY_G0000017;gene_biotype=protein_coding;gene_name=LOC105373102;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000017;Name=LOC105373102
HG003_chrY	CAT	transcript	1210379	1215287	100	+	.	source_transcript=hg002_chrY_paternal_23.1;source_transcript_name=hg002_chrY_paternal_23.2;source_gene=hg002_chrY_paternal_23;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_23;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_23.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_23.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105373102;alternative_source_transcripts=hg002_chrY_paternal_23.1,hg002_chrY_paternal_23.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000074;gene_id=HG003_chrY_G0000017;Parent=HG003_chrY_G0000017;transcript_name=hg002_chrY_paternal_23.2;gene_name=LOC105373102;ID=HG003_chrY_T0000074;Name=LOC105373102
HG003_chrY	CAT	exon	1210379	1210727	.	+	.	source_transcript=hg002_chrY_paternal_23.1;source_transcript_name=hg002_chrY_paternal_23.2;source_gene=hg002_chrY_paternal_23;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_23;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_23.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_23.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105373102;alternative_source_transcripts=hg002_chrY_paternal_23.1,hg002_chrY_paternal_23.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000074;gene_id=HG003_chrY_G0000017;Parent=HG003_chrY_T0000074;transcript_name=hg002_chrY_paternal_23.2;gene_name=LOC105373102;ID=exon:HG003_chrY_T0000074:0;Name=LOC105373102;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1210379	1210727	.	+	0	source_transcript=hg002_chrY_paternal_23.1;source_transcript_name=hg002_chrY_paternal_23.2;source_gene=hg002_chrY_paternal_23;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_23;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_23.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_23.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105373102;alternative_source_transcripts=hg002_chrY_paternal_23.1,hg002_chrY_paternal_23.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000074;gene_id=HG003_chrY_G0000017;Parent=HG003_chrY_T0000074;transcript_name=hg002_chrY_paternal_23.2;gene_name=LOC105373102;ID=CDS:HG003_chrY_T0000074:0;Name=LOC105373102;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1210379	1210381	.	+	0	source_transcript=hg002_chrY_paternal_23.1;source_transcript_name=hg002_chrY_paternal_23.2;source_gene=hg002_chrY_paternal_23;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_23;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_23.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_23.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105373102;alternative_source_transcripts=hg002_chrY_paternal_23.1,hg002_chrY_paternal_23.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000074;gene_id=HG003_chrY_G0000017;Parent=HG003_chrY_T0000074;transcript_name=hg002_chrY_paternal_23.2;gene_name=LOC105373102;ID=start_codon:HG003_chrY_T0000074;Name=LOC105373102;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1210728	1213535	.	+	.	source_transcript=hg002_chrY_paternal_23.1;source_transcript_name=hg002_chrY_paternal_23.2;source_gene=hg002_chrY_paternal_23;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_23;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_23.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_23.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105373102;alternative_source_transcripts=hg002_chrY_paternal_23.1,hg002_chrY_paternal_23.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000074;gene_id=HG003_chrY_G0000017;Parent=HG003_chrY_T0000074;transcript_name=hg002_chrY_paternal_23.2;gene_name=LOC105373102;ID=intron:HG003_chrY_T0000074:0;Name=LOC105373102;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1213536	1213954	.	+	.	source_transcript=hg002_chrY_paternal_23.1;source_transcript_name=hg002_chrY_paternal_23.2;source_gene=hg002_chrY_paternal_23;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_23;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_23.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_23.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105373102;alternative_source_transcripts=hg002_chrY_paternal_23.1,hg002_chrY_paternal_23.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000074;gene_id=HG003_chrY_G0000017;Parent=HG003_chrY_T0000074;transcript_name=hg002_chrY_paternal_23.2;gene_name=LOC105373102;ID=exon:HG003_chrY_T0000074:1;Name=LOC105373102;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1213536	1213954	.	+	2	source_transcript=hg002_chrY_paternal_23.1;source_transcript_name=hg002_chrY_paternal_23.2;source_gene=hg002_chrY_paternal_23;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_23;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_23.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_23.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105373102;alternative_source_transcripts=hg002_chrY_paternal_23.1,hg002_chrY_paternal_23.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000074;gene_id=HG003_chrY_G0000017;Parent=HG003_chrY_T0000074;transcript_name=hg002_chrY_paternal_23.2;gene_name=LOC105373102;ID=CDS:HG003_chrY_T0000074:1;Name=LOC105373102;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1213955	1214777	.	+	.	source_transcript=hg002_chrY_paternal_23.1;source_transcript_name=hg002_chrY_paternal_23.2;source_gene=hg002_chrY_paternal_23;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_23;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_23.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_23.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105373102;alternative_source_transcripts=hg002_chrY_paternal_23.1,hg002_chrY_paternal_23.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000074;gene_id=HG003_chrY_G0000017;Parent=HG003_chrY_T0000074;transcript_name=hg002_chrY_paternal_23.2;gene_name=LOC105373102;ID=intron:HG003_chrY_T0000074:1;Name=LOC105373102;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1214778	1215287	.	+	.	source_transcript=hg002_chrY_paternal_23.1;source_transcript_name=hg002_chrY_paternal_23.2;source_gene=hg002_chrY_paternal_23;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_23;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_23.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_23.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105373102;alternative_source_transcripts=hg002_chrY_paternal_23.1,hg002_chrY_paternal_23.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000074;gene_id=HG003_chrY_G0000017;Parent=HG003_chrY_T0000074;transcript_name=hg002_chrY_paternal_23.2;gene_name=LOC105373102;ID=exon:HG003_chrY_T0000074:2;Name=LOC105373102;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1214778	1214798	.	+	0	source_transcript=hg002_chrY_paternal_23.1;source_transcript_name=hg002_chrY_paternal_23.2;source_gene=hg002_chrY_paternal_23;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_23;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_23.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_23.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105373102;alternative_source_transcripts=hg002_chrY_paternal_23.1,hg002_chrY_paternal_23.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000074;gene_id=HG003_chrY_G0000017;Parent=HG003_chrY_T0000074;transcript_name=hg002_chrY_paternal_23.2;gene_name=LOC105373102;ID=CDS:HG003_chrY_T0000074:2;Name=LOC105373102;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1214796	1214798	.	+	0	source_transcript=hg002_chrY_paternal_23.1;source_transcript_name=hg002_chrY_paternal_23.2;source_gene=hg002_chrY_paternal_23;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_23;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_23.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_23.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105373102;alternative_source_transcripts=hg002_chrY_paternal_23.1,hg002_chrY_paternal_23.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000074;gene_id=HG003_chrY_G0000017;Parent=HG003_chrY_T0000074;transcript_name=hg002_chrY_paternal_23.2;gene_name=LOC105373102;ID=stop_codon:HG003_chrY_T0000074;Name=LOC105373102;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1210379	1215287	1000	+	.	source_transcript=hg002_chrY_paternal_23.2;source_transcript_name=hg002_chrY_paternal_23.1;source_gene=hg002_chrY_paternal_23;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_23;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_23.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_23.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105373102;alternative_source_transcripts=hg002_chrY_paternal_23.2,hg002_chrY_paternal_23.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000075;gene_id=HG003_chrY_G0000017;Parent=HG003_chrY_G0000017;transcript_name=hg002_chrY_paternal_23.1;gene_name=LOC105373102;ID=HG003_chrY_T0000075;Name=LOC105373102
HG003_chrY	CAT	exon	1210379	1210727	.	+	.	source_transcript=hg002_chrY_paternal_23.2;source_transcript_name=hg002_chrY_paternal_23.1;source_gene=hg002_chrY_paternal_23;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_23;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_23.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_23.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105373102;alternative_source_transcripts=hg002_chrY_paternal_23.2,hg002_chrY_paternal_23.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000075;gene_id=HG003_chrY_G0000017;Parent=HG003_chrY_T0000075;transcript_name=hg002_chrY_paternal_23.1;gene_name=LOC105373102;ID=exon:HG003_chrY_T0000075:0;Name=LOC105373102;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1210728	1213535	.	+	.	source_transcript=hg002_chrY_paternal_23.2;source_transcript_name=hg002_chrY_paternal_23.1;source_gene=hg002_chrY_paternal_23;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_23;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_23.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_23.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105373102;alternative_source_transcripts=hg002_chrY_paternal_23.2,hg002_chrY_paternal_23.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000075;gene_id=HG003_chrY_G0000017;Parent=HG003_chrY_T0000075;transcript_name=hg002_chrY_paternal_23.1;gene_name=LOC105373102;ID=intron:HG003_chrY_T0000075:0;Name=LOC105373102;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1213536	1213954	.	+	.	source_transcript=hg002_chrY_paternal_23.2;source_transcript_name=hg002_chrY_paternal_23.1;source_gene=hg002_chrY_paternal_23;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_23;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_23.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_23.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105373102;alternative_source_transcripts=hg002_chrY_paternal_23.2,hg002_chrY_paternal_23.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000075;gene_id=HG003_chrY_G0000017;Parent=HG003_chrY_T0000075;transcript_name=hg002_chrY_paternal_23.1;gene_name=LOC105373102;ID=exon:HG003_chrY_T0000075:1;Name=LOC105373102;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1213955	1214777	.	+	.	source_transcript=hg002_chrY_paternal_23.2;source_transcript_name=hg002_chrY_paternal_23.1;source_gene=hg002_chrY_paternal_23;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_23;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_23.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_23.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105373102;alternative_source_transcripts=hg002_chrY_paternal_23.2,hg002_chrY_paternal_23.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000075;gene_id=HG003_chrY_G0000017;Parent=HG003_chrY_T0000075;transcript_name=hg002_chrY_paternal_23.1;gene_name=LOC105373102;ID=intron:HG003_chrY_T0000075:1;Name=LOC105373102;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1214778	1214921	.	+	.	source_transcript=hg002_chrY_paternal_23.2;source_transcript_name=hg002_chrY_paternal_23.1;source_gene=hg002_chrY_paternal_23;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_23;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_23.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_23.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105373102;alternative_source_transcripts=hg002_chrY_paternal_23.2,hg002_chrY_paternal_23.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000075;gene_id=HG003_chrY_G0000017;Parent=HG003_chrY_T0000075;transcript_name=hg002_chrY_paternal_23.1;gene_name=LOC105373102;ID=exon:HG003_chrY_T0000075:2;Name=LOC105373102;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1214922	1215015	.	+	.	source_transcript=hg002_chrY_paternal_23.2;source_transcript_name=hg002_chrY_paternal_23.1;source_gene=hg002_chrY_paternal_23;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_23;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_23.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_23.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105373102;alternative_source_transcripts=hg002_chrY_paternal_23.2,hg002_chrY_paternal_23.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000075;gene_id=HG003_chrY_G0000017;Parent=HG003_chrY_T0000075;transcript_name=hg002_chrY_paternal_23.1;gene_name=LOC105373102;ID=intron:HG003_chrY_T0000075:2;Name=LOC105373102;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1215016	1215287	.	+	.	source_transcript=hg002_chrY_paternal_23.2;source_transcript_name=hg002_chrY_paternal_23.1;source_gene=hg002_chrY_paternal_23;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_23;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_23.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_23.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105373102;alternative_source_transcripts=hg002_chrY_paternal_23.2,hg002_chrY_paternal_23.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000075;gene_id=HG003_chrY_G0000017;Parent=HG003_chrY_T0000075;transcript_name=hg002_chrY_paternal_23.1;gene_name=LOC105373102;ID=exon:HG003_chrY_T0000075:3;Name=LOC105373102;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	1215431	1217818	.	+	.	source_gene_common_name=LINC00106;source_gene=hg002_chrY_paternal_24;alternative_source_transcripts=hg002_chrY_paternal_24.1,hg002_chrY_paternal_24.1;gene_id=HG003_chrY_G0000018;gene_biotype=lncRNA;gene_name=LINC00106;gene_sources=liftoff;ID=HG003_chrY_G0000018;Name=LINC00106
HG003_chrY	CAT	transcript	1215431	1217818	1000	+	.	source_transcript=hg002_chrY_paternal_24.1;source_transcript_name=hg002_chrY_paternal_24.1;source_gene=hg002_chrY_paternal_24;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_24;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_24.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_24.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00106;alternative_source_transcripts=hg002_chrY_paternal_24.1,hg002_chrY_paternal_24.1;transcript_id=HG003_chrY_T0000076;gene_id=HG003_chrY_G0000018;Parent=HG003_chrY_G0000018;transcript_name=hg002_chrY_paternal_24.1;gene_name=LINC00106;ID=HG003_chrY_T0000076;Name=LINC00106
HG003_chrY	CAT	exon	1215431	1215630	.	+	.	source_transcript=hg002_chrY_paternal_24.1;source_transcript_name=hg002_chrY_paternal_24.1;source_gene=hg002_chrY_paternal_24;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_24;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_24.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_24.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00106;alternative_source_transcripts=hg002_chrY_paternal_24.1,hg002_chrY_paternal_24.1;transcript_id=HG003_chrY_T0000076;gene_id=HG003_chrY_G0000018;Parent=HG003_chrY_T0000076;transcript_name=hg002_chrY_paternal_24.1;gene_name=LINC00106;ID=exon:HG003_chrY_T0000076:0;Name=LINC00106;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1215631	1217230	.	+	.	source_transcript=hg002_chrY_paternal_24.1;source_transcript_name=hg002_chrY_paternal_24.1;source_gene=hg002_chrY_paternal_24;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_24;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_24.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_24.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00106;alternative_source_transcripts=hg002_chrY_paternal_24.1,hg002_chrY_paternal_24.1;transcript_id=HG003_chrY_T0000076;gene_id=HG003_chrY_G0000018;Parent=HG003_chrY_T0000076;transcript_name=hg002_chrY_paternal_24.1;gene_name=LINC00106;ID=intron:HG003_chrY_T0000076:0;Name=LINC00106;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1217231	1217364	.	+	.	source_transcript=hg002_chrY_paternal_24.1;source_transcript_name=hg002_chrY_paternal_24.1;source_gene=hg002_chrY_paternal_24;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_24;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_24.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_24.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00106;alternative_source_transcripts=hg002_chrY_paternal_24.1,hg002_chrY_paternal_24.1;transcript_id=HG003_chrY_T0000076;gene_id=HG003_chrY_G0000018;Parent=HG003_chrY_T0000076;transcript_name=hg002_chrY_paternal_24.1;gene_name=LINC00106;ID=exon:HG003_chrY_T0000076:1;Name=LINC00106;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1217365	1217772	.	+	.	source_transcript=hg002_chrY_paternal_24.1;source_transcript_name=hg002_chrY_paternal_24.1;source_gene=hg002_chrY_paternal_24;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_24;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_24.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_24.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00106;alternative_source_transcripts=hg002_chrY_paternal_24.1,hg002_chrY_paternal_24.1;transcript_id=HG003_chrY_T0000076;gene_id=HG003_chrY_G0000018;Parent=HG003_chrY_T0000076;transcript_name=hg002_chrY_paternal_24.1;gene_name=LINC00106;ID=intron:HG003_chrY_T0000076:1;Name=LINC00106;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1217773	1217818	.	+	.	source_transcript=hg002_chrY_paternal_24.1;source_transcript_name=hg002_chrY_paternal_24.1;source_gene=hg002_chrY_paternal_24;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_24;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_24.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_24.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00106;alternative_source_transcripts=hg002_chrY_paternal_24.1,hg002_chrY_paternal_24.1;transcript_id=HG003_chrY_T0000076;gene_id=HG003_chrY_G0000018;Parent=HG003_chrY_T0000076;transcript_name=hg002_chrY_paternal_24.1;gene_name=LINC00106;ID=exon:HG003_chrY_T0000076:2;Name=LINC00106;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	1218937	1232320	.	+	.	source_gene_common_name=ASMTL-AS1;source_gene=hg002_chrY_paternal_25;alternative_source_transcripts=hg002_chrY_paternal_25.1,hg002_chrY_paternal_25.1;gene_id=HG003_chrY_G0000019;gene_biotype=lncRNA;gene_name=ASMTL-AS1;gene_sources=liftoff;ID=HG003_chrY_G0000019;Name=ASMTL-AS1
HG003_chrY	CAT	transcript	1218937	1230463	1000	+	.	source_transcript=hg002_chrY_paternal_25.1;source_transcript_name=hg002_chrY_paternal_25.1;source_gene=hg002_chrY_paternal_25;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_25;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_25.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_25.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=hg002_chrY_paternal_25.1,hg002_chrY_paternal_25.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_G0000019;transcript_name=hg002_chrY_paternal_25.1;gene_name=ASMTL-AS1;ID=HG003_chrY_T0000077;Name=ASMTL-AS1
HG003_chrY	CAT	exon	1218937	1218992	.	+	.	source_transcript=hg002_chrY_paternal_25.1;source_transcript_name=hg002_chrY_paternal_25.1;source_gene=hg002_chrY_paternal_25;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_25;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_25.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_25.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=hg002_chrY_paternal_25.1,hg002_chrY_paternal_25.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000077;transcript_name=hg002_chrY_paternal_25.1;gene_name=ASMTL-AS1;ID=exon:HG003_chrY_T0000077:0;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1218993	1219867	.	+	.	source_transcript=hg002_chrY_paternal_25.1;source_transcript_name=hg002_chrY_paternal_25.1;source_gene=hg002_chrY_paternal_25;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_25;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_25.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_25.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=hg002_chrY_paternal_25.1,hg002_chrY_paternal_25.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000077;transcript_name=hg002_chrY_paternal_25.1;gene_name=ASMTL-AS1;ID=intron:HG003_chrY_T0000077:0;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1219868	1220631	.	+	.	source_transcript=hg002_chrY_paternal_25.1;source_transcript_name=hg002_chrY_paternal_25.1;source_gene=hg002_chrY_paternal_25;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_25;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_25.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_25.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=hg002_chrY_paternal_25.1,hg002_chrY_paternal_25.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000077;transcript_name=hg002_chrY_paternal_25.1;gene_name=ASMTL-AS1;ID=exon:HG003_chrY_T0000077:1;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1220632	1221783	.	+	.	source_transcript=hg002_chrY_paternal_25.1;source_transcript_name=hg002_chrY_paternal_25.1;source_gene=hg002_chrY_paternal_25;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_25;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_25.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_25.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=hg002_chrY_paternal_25.1,hg002_chrY_paternal_25.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000077;transcript_name=hg002_chrY_paternal_25.1;gene_name=ASMTL-AS1;ID=intron:HG003_chrY_T0000077:1;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1221784	1221908	.	+	.	source_transcript=hg002_chrY_paternal_25.1;source_transcript_name=hg002_chrY_paternal_25.1;source_gene=hg002_chrY_paternal_25;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_25;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_25.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_25.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=hg002_chrY_paternal_25.1,hg002_chrY_paternal_25.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000077;transcript_name=hg002_chrY_paternal_25.1;gene_name=ASMTL-AS1;ID=exon:HG003_chrY_T0000077:2;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1221909	1229619	.	+	.	source_transcript=hg002_chrY_paternal_25.1;source_transcript_name=hg002_chrY_paternal_25.1;source_gene=hg002_chrY_paternal_25;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_25;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_25.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_25.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=hg002_chrY_paternal_25.1,hg002_chrY_paternal_25.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000077;transcript_name=hg002_chrY_paternal_25.1;gene_name=ASMTL-AS1;ID=intron:HG003_chrY_T0000077:2;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1229620	1230463	.	+	.	source_transcript=hg002_chrY_paternal_25.1;source_transcript_name=hg002_chrY_paternal_25.1;source_gene=hg002_chrY_paternal_25;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_25;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_25.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_25.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=hg002_chrY_paternal_25.1,hg002_chrY_paternal_25.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000077;transcript_name=hg002_chrY_paternal_25.1;gene_name=ASMTL-AS1;ID=exon:HG003_chrY_T0000077:3;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1218937	1232320	1000	+	.	source_transcript=hg002_chrY_paternal_25.2;source_transcript_name=hg002_chrY_paternal_25.1;source_gene=hg002_chrY_paternal_25;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_25;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_25.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_25.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=hg002_chrY_paternal_25.2,hg002_chrY_paternal_25.2;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_G0000019;transcript_name=hg002_chrY_paternal_25.1;gene_name=ASMTL-AS1;ID=HG003_chrY_T0000078;Name=ASMTL-AS1
HG003_chrY	CAT	exon	1218937	1218992	.	+	.	source_transcript=hg002_chrY_paternal_25.2;source_transcript_name=hg002_chrY_paternal_25.1;source_gene=hg002_chrY_paternal_25;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_25;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_25.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_25.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=hg002_chrY_paternal_25.2,hg002_chrY_paternal_25.2;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000078;transcript_name=hg002_chrY_paternal_25.1;gene_name=ASMTL-AS1;ID=exon:HG003_chrY_T0000078:0;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1218993	1219867	.	+	.	source_transcript=hg002_chrY_paternal_25.2;source_transcript_name=hg002_chrY_paternal_25.1;source_gene=hg002_chrY_paternal_25;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_25;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_25.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_25.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=hg002_chrY_paternal_25.2,hg002_chrY_paternal_25.2;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000078;transcript_name=hg002_chrY_paternal_25.1;gene_name=ASMTL-AS1;ID=intron:HG003_chrY_T0000078:0;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1219868	1220631	.	+	.	source_transcript=hg002_chrY_paternal_25.2;source_transcript_name=hg002_chrY_paternal_25.1;source_gene=hg002_chrY_paternal_25;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_25;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_25.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_25.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=hg002_chrY_paternal_25.2,hg002_chrY_paternal_25.2;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000078;transcript_name=hg002_chrY_paternal_25.1;gene_name=ASMTL-AS1;ID=exon:HG003_chrY_T0000078:1;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1220632	1221783	.	+	.	source_transcript=hg002_chrY_paternal_25.2;source_transcript_name=hg002_chrY_paternal_25.1;source_gene=hg002_chrY_paternal_25;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_25;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_25.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_25.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=hg002_chrY_paternal_25.2,hg002_chrY_paternal_25.2;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000078;transcript_name=hg002_chrY_paternal_25.1;gene_name=ASMTL-AS1;ID=intron:HG003_chrY_T0000078:1;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1221784	1221908	.	+	.	source_transcript=hg002_chrY_paternal_25.2;source_transcript_name=hg002_chrY_paternal_25.1;source_gene=hg002_chrY_paternal_25;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_25;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_25.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_25.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=hg002_chrY_paternal_25.2,hg002_chrY_paternal_25.2;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000078;transcript_name=hg002_chrY_paternal_25.1;gene_name=ASMTL-AS1;ID=exon:HG003_chrY_T0000078:2;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1221909	1229619	.	+	.	source_transcript=hg002_chrY_paternal_25.2;source_transcript_name=hg002_chrY_paternal_25.1;source_gene=hg002_chrY_paternal_25;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_25;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_25.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_25.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=hg002_chrY_paternal_25.2,hg002_chrY_paternal_25.2;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000078;transcript_name=hg002_chrY_paternal_25.1;gene_name=ASMTL-AS1;ID=intron:HG003_chrY_T0000078:2;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1229620	1229765	.	+	.	source_transcript=hg002_chrY_paternal_25.2;source_transcript_name=hg002_chrY_paternal_25.1;source_gene=hg002_chrY_paternal_25;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_25;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_25.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_25.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=hg002_chrY_paternal_25.2,hg002_chrY_paternal_25.2;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000078;transcript_name=hg002_chrY_paternal_25.1;gene_name=ASMTL-AS1;ID=exon:HG003_chrY_T0000078:3;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1229766	1230638	.	+	.	source_transcript=hg002_chrY_paternal_25.2;source_transcript_name=hg002_chrY_paternal_25.1;source_gene=hg002_chrY_paternal_25;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_25;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_25.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_25.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=hg002_chrY_paternal_25.2,hg002_chrY_paternal_25.2;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000078;transcript_name=hg002_chrY_paternal_25.1;gene_name=ASMTL-AS1;ID=intron:HG003_chrY_T0000078:3;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1230639	1231187	.	+	.	source_transcript=hg002_chrY_paternal_25.2;source_transcript_name=hg002_chrY_paternal_25.1;source_gene=hg002_chrY_paternal_25;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_25;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_25.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_25.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=hg002_chrY_paternal_25.2,hg002_chrY_paternal_25.2;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000078;transcript_name=hg002_chrY_paternal_25.1;gene_name=ASMTL-AS1;ID=exon:HG003_chrY_T0000078:4;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1231188	1231619	.	+	.	source_transcript=hg002_chrY_paternal_25.2;source_transcript_name=hg002_chrY_paternal_25.1;source_gene=hg002_chrY_paternal_25;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_25;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_25.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_25.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=hg002_chrY_paternal_25.2,hg002_chrY_paternal_25.2;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000078;transcript_name=hg002_chrY_paternal_25.1;gene_name=ASMTL-AS1;ID=intron:HG003_chrY_T0000078:4;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1231620	1232320	.	+	.	source_transcript=hg002_chrY_paternal_25.2;source_transcript_name=hg002_chrY_paternal_25.1;source_gene=hg002_chrY_paternal_25;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_25;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_25.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_25.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=hg002_chrY_paternal_25.2,hg002_chrY_paternal_25.2;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000078;transcript_name=hg002_chrY_paternal_25.1;gene_name=ASMTL-AS1;ID=exon:HG003_chrY_T0000078:5;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	1221462	1271232	.	-	.	source_gene_common_name=ASMTL;source_gene=hg002_chrY_paternal_26;alternative_source_transcripts=hg002_chrY_paternal_26.1,hg002_chrY_paternal_26.1;gene_id=HG003_chrY_G0000020;gene_biotype=protein_coding;gene_name=ASMTL;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000020;Name=ASMTL
HG003_chrY	CAT	transcript	1221462	1253923	100	-	.	source_transcript=hg002_chrY_paternal_26.1;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.1,hg002_chrY_paternal_26.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_G0000020;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=HG003_chrY_T0000079;Name=ASMTL
HG003_chrY	CAT	exon	1221462	1221812	.	-	.	source_transcript=hg002_chrY_paternal_26.1;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.1,hg002_chrY_paternal_26.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000079;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000079:0;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1221592	1221812	.	-	2	source_transcript=hg002_chrY_paternal_26.1;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.1,hg002_chrY_paternal_26.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000079;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000079:0;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1221592	1221594	.	-	0	source_transcript=hg002_chrY_paternal_26.1;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.1,hg002_chrY_paternal_26.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000079;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=stop_codon:HG003_chrY_T0000079;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1221813	1229608	.	-	.	source_transcript=hg002_chrY_paternal_26.1;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.1,hg002_chrY_paternal_26.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000079;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000079:0;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1229609	1229731	.	-	.	source_transcript=hg002_chrY_paternal_26.1;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.1,hg002_chrY_paternal_26.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000079;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000079:1;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1229609	1229731	.	-	2	source_transcript=hg002_chrY_paternal_26.1;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.1,hg002_chrY_paternal_26.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000079;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000079:1;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1229732	1234862	.	-	.	source_transcript=hg002_chrY_paternal_26.1;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.1,hg002_chrY_paternal_26.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000079;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000079:1;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1234863	1235006	.	-	.	source_transcript=hg002_chrY_paternal_26.1;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.1,hg002_chrY_paternal_26.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000079;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000079:2;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1234863	1235006	.	-	2	source_transcript=hg002_chrY_paternal_26.1;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.1,hg002_chrY_paternal_26.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000079;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000079:2;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1235007	1235871	.	-	.	source_transcript=hg002_chrY_paternal_26.1;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.1,hg002_chrY_paternal_26.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000079;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000079:2;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1235872	1236004	.	-	.	source_transcript=hg002_chrY_paternal_26.1;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.1,hg002_chrY_paternal_26.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000079;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000079:3;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1235872	1236004	.	-	0	source_transcript=hg002_chrY_paternal_26.1;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.1,hg002_chrY_paternal_26.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000079;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000079:3;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1236005	1238560	.	-	.	source_transcript=hg002_chrY_paternal_26.1;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.1,hg002_chrY_paternal_26.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000079;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000079:3;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1238561	1238745	.	-	.	source_transcript=hg002_chrY_paternal_26.1;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.1,hg002_chrY_paternal_26.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000079;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000079:4;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1238561	1238745	.	-	2	source_transcript=hg002_chrY_paternal_26.1;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.1,hg002_chrY_paternal_26.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000079;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000079:4;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1238746	1242427	.	-	.	source_transcript=hg002_chrY_paternal_26.1;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.1,hg002_chrY_paternal_26.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000079;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000079:4;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1242428	1242590	.	-	.	source_transcript=hg002_chrY_paternal_26.1;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.1,hg002_chrY_paternal_26.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000079;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000079:5;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1242428	1242590	.	-	0	source_transcript=hg002_chrY_paternal_26.1;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.1,hg002_chrY_paternal_26.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000079;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000079:5;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1242591	1244636	.	-	.	source_transcript=hg002_chrY_paternal_26.1;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.1,hg002_chrY_paternal_26.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000079;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000079:5;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1244637	1245024	.	-	.	source_transcript=hg002_chrY_paternal_26.1;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.1,hg002_chrY_paternal_26.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000079;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000079:6;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1244637	1245024	.	-	1	source_transcript=hg002_chrY_paternal_26.1;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.1,hg002_chrY_paternal_26.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000079;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000079:6;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1245025	1249170	.	-	.	source_transcript=hg002_chrY_paternal_26.1;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.1,hg002_chrY_paternal_26.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000079;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000079:6;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1249171	1249279	.	-	.	source_transcript=hg002_chrY_paternal_26.1;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.1,hg002_chrY_paternal_26.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000079;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000079:7;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1249171	1249279	.	-	2	source_transcript=hg002_chrY_paternal_26.1;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.1,hg002_chrY_paternal_26.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000079;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000079:7;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1249280	1252732	.	-	.	source_transcript=hg002_chrY_paternal_26.1;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.1,hg002_chrY_paternal_26.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000079;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000079:7;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1252733	1252794	.	-	.	source_transcript=hg002_chrY_paternal_26.1;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.1,hg002_chrY_paternal_26.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000079;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000079:8;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1252733	1252794	.	-	1	source_transcript=hg002_chrY_paternal_26.1;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.1,hg002_chrY_paternal_26.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000079;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000079:8;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1252795	1253403	.	-	.	source_transcript=hg002_chrY_paternal_26.1;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.1,hg002_chrY_paternal_26.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000079;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000079:8;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1253404	1253468	.	-	.	source_transcript=hg002_chrY_paternal_26.1;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.1,hg002_chrY_paternal_26.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000079;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000079:9;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1253404	1253468	.	-	0	source_transcript=hg002_chrY_paternal_26.1;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.1,hg002_chrY_paternal_26.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000079;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000079:9;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1253469	1253765	.	-	.	source_transcript=hg002_chrY_paternal_26.1;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.1,hg002_chrY_paternal_26.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000079;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000079:9;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1253766	1253923	.	-	.	source_transcript=hg002_chrY_paternal_26.1;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.1,hg002_chrY_paternal_26.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000079;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000079:10;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1253766	1253789	.	-	0	source_transcript=hg002_chrY_paternal_26.1;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.1,hg002_chrY_paternal_26.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000079;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000079:10;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1253787	1253789	.	-	0	source_transcript=hg002_chrY_paternal_26.1;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.1,hg002_chrY_paternal_26.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000079;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=start_codon:HG003_chrY_T0000079;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1221462	1257265	100	-	.	source_transcript=hg002_chrY_paternal_26.2;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.2,hg002_chrY_paternal_26.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_G0000020;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=HG003_chrY_T0000080;Name=ASMTL
HG003_chrY	CAT	exon	1221462	1221812	.	-	.	source_transcript=hg002_chrY_paternal_26.2;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.2,hg002_chrY_paternal_26.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000080;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000080:0;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1221592	1221812	.	-	2	source_transcript=hg002_chrY_paternal_26.2;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.2,hg002_chrY_paternal_26.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000080;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000080:0;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1221592	1221594	.	-	0	source_transcript=hg002_chrY_paternal_26.2;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.2,hg002_chrY_paternal_26.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000080;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=stop_codon:HG003_chrY_T0000080;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1221813	1229608	.	-	.	source_transcript=hg002_chrY_paternal_26.2;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.2,hg002_chrY_paternal_26.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000080;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000080:0;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1229609	1229731	.	-	.	source_transcript=hg002_chrY_paternal_26.2;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.2,hg002_chrY_paternal_26.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000080;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000080:1;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1229609	1229731	.	-	2	source_transcript=hg002_chrY_paternal_26.2;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.2,hg002_chrY_paternal_26.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000080;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000080:1;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1229732	1234862	.	-	.	source_transcript=hg002_chrY_paternal_26.2;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.2,hg002_chrY_paternal_26.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000080;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000080:1;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1234863	1235006	.	-	.	source_transcript=hg002_chrY_paternal_26.2;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.2,hg002_chrY_paternal_26.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000080;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000080:2;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1234863	1235006	.	-	2	source_transcript=hg002_chrY_paternal_26.2;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.2,hg002_chrY_paternal_26.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000080;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000080:2;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1235007	1235871	.	-	.	source_transcript=hg002_chrY_paternal_26.2;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.2,hg002_chrY_paternal_26.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000080;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000080:2;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1235872	1236004	.	-	.	source_transcript=hg002_chrY_paternal_26.2;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.2,hg002_chrY_paternal_26.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000080;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000080:3;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1235872	1236004	.	-	0	source_transcript=hg002_chrY_paternal_26.2;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.2,hg002_chrY_paternal_26.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000080;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000080:3;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1236005	1238560	.	-	.	source_transcript=hg002_chrY_paternal_26.2;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.2,hg002_chrY_paternal_26.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000080;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000080:3;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1238561	1238745	.	-	.	source_transcript=hg002_chrY_paternal_26.2;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.2,hg002_chrY_paternal_26.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000080;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000080:4;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1238561	1238745	.	-	2	source_transcript=hg002_chrY_paternal_26.2;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.2,hg002_chrY_paternal_26.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000080;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000080:4;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1238746	1242427	.	-	.	source_transcript=hg002_chrY_paternal_26.2;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.2,hg002_chrY_paternal_26.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000080;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000080:4;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1242428	1242590	.	-	.	source_transcript=hg002_chrY_paternal_26.2;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.2,hg002_chrY_paternal_26.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000080;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000080:5;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1242428	1242590	.	-	0	source_transcript=hg002_chrY_paternal_26.2;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.2,hg002_chrY_paternal_26.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000080;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000080:5;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1242591	1244636	.	-	.	source_transcript=hg002_chrY_paternal_26.2;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.2,hg002_chrY_paternal_26.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000080;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000080:5;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1244637	1245024	.	-	.	source_transcript=hg002_chrY_paternal_26.2;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.2,hg002_chrY_paternal_26.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000080;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000080:6;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1244637	1245024	.	-	1	source_transcript=hg002_chrY_paternal_26.2;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.2,hg002_chrY_paternal_26.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000080;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000080:6;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1245025	1249170	.	-	.	source_transcript=hg002_chrY_paternal_26.2;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.2,hg002_chrY_paternal_26.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000080;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000080:6;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1249171	1249279	.	-	.	source_transcript=hg002_chrY_paternal_26.2;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.2,hg002_chrY_paternal_26.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000080;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000080:7;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1249171	1249279	.	-	2	source_transcript=hg002_chrY_paternal_26.2;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.2,hg002_chrY_paternal_26.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000080;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000080:7;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1249280	1252732	.	-	.	source_transcript=hg002_chrY_paternal_26.2;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.2,hg002_chrY_paternal_26.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000080;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000080:7;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1252733	1252794	.	-	.	source_transcript=hg002_chrY_paternal_26.2;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.2,hg002_chrY_paternal_26.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000080;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000080:8;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1252733	1252794	.	-	1	source_transcript=hg002_chrY_paternal_26.2;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.2,hg002_chrY_paternal_26.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000080;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000080:8;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1252795	1253403	.	-	.	source_transcript=hg002_chrY_paternal_26.2;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.2,hg002_chrY_paternal_26.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000080;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000080:8;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1253404	1253468	.	-	.	source_transcript=hg002_chrY_paternal_26.2;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.2,hg002_chrY_paternal_26.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000080;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000080:9;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1253404	1253414	.	-	0	source_transcript=hg002_chrY_paternal_26.2;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.2,hg002_chrY_paternal_26.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000080;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000080:9;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1253412	1253414	.	-	0	source_transcript=hg002_chrY_paternal_26.2;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.2,hg002_chrY_paternal_26.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000080;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=start_codon:HG003_chrY_T0000080;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1253469	1256805	.	-	.	source_transcript=hg002_chrY_paternal_26.2;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.2,hg002_chrY_paternal_26.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000080;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000080:9;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1256806	1256853	.	-	.	source_transcript=hg002_chrY_paternal_26.2;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.2,hg002_chrY_paternal_26.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000080;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000080:10;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1256854	1257103	.	-	.	source_transcript=hg002_chrY_paternal_26.2;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.2,hg002_chrY_paternal_26.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000080;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000080:10;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1257104	1257265	.	-	.	source_transcript=hg002_chrY_paternal_26.2;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.2,hg002_chrY_paternal_26.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000080;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000080:11;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1221462	1270385	100	-	.	source_transcript=hg002_chrY_paternal_26.3;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.3,hg002_chrY_paternal_26.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_G0000020;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=HG003_chrY_T0000081;Name=ASMTL
HG003_chrY	CAT	exon	1221462	1221812	.	-	.	source_transcript=hg002_chrY_paternal_26.3;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.3,hg002_chrY_paternal_26.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000081;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000081:0;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1221592	1221812	.	-	2	source_transcript=hg002_chrY_paternal_26.3;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.3,hg002_chrY_paternal_26.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000081;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000081:0;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1221592	1221594	.	-	0	source_transcript=hg002_chrY_paternal_26.3;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.3,hg002_chrY_paternal_26.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000081;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=stop_codon:HG003_chrY_T0000081;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1221813	1229608	.	-	.	source_transcript=hg002_chrY_paternal_26.3;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.3,hg002_chrY_paternal_26.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000081;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000081:0;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1229609	1229731	.	-	.	source_transcript=hg002_chrY_paternal_26.3;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.3,hg002_chrY_paternal_26.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000081;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000081:1;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1229609	1229731	.	-	2	source_transcript=hg002_chrY_paternal_26.3;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.3,hg002_chrY_paternal_26.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000081;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000081:1;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1229732	1234862	.	-	.	source_transcript=hg002_chrY_paternal_26.3;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.3,hg002_chrY_paternal_26.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000081;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000081:1;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1234863	1235006	.	-	.	source_transcript=hg002_chrY_paternal_26.3;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.3,hg002_chrY_paternal_26.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000081;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000081:2;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1234863	1235006	.	-	2	source_transcript=hg002_chrY_paternal_26.3;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.3,hg002_chrY_paternal_26.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000081;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000081:2;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1235007	1235871	.	-	.	source_transcript=hg002_chrY_paternal_26.3;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.3,hg002_chrY_paternal_26.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000081;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000081:2;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1235872	1236004	.	-	.	source_transcript=hg002_chrY_paternal_26.3;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.3,hg002_chrY_paternal_26.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000081;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000081:3;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1235872	1236004	.	-	0	source_transcript=hg002_chrY_paternal_26.3;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.3,hg002_chrY_paternal_26.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000081;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000081:3;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1236005	1238560	.	-	.	source_transcript=hg002_chrY_paternal_26.3;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.3,hg002_chrY_paternal_26.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000081;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000081:3;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1238561	1238745	.	-	.	source_transcript=hg002_chrY_paternal_26.3;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.3,hg002_chrY_paternal_26.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000081;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000081:4;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1238561	1238745	.	-	2	source_transcript=hg002_chrY_paternal_26.3;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.3,hg002_chrY_paternal_26.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000081;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000081:4;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1238746	1242427	.	-	.	source_transcript=hg002_chrY_paternal_26.3;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.3,hg002_chrY_paternal_26.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000081;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000081:4;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1242428	1242590	.	-	.	source_transcript=hg002_chrY_paternal_26.3;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.3,hg002_chrY_paternal_26.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000081;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000081:5;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1242428	1242590	.	-	0	source_transcript=hg002_chrY_paternal_26.3;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.3,hg002_chrY_paternal_26.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000081;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000081:5;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1242591	1244636	.	-	.	source_transcript=hg002_chrY_paternal_26.3;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.3,hg002_chrY_paternal_26.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000081;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000081:5;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1244637	1245024	.	-	.	source_transcript=hg002_chrY_paternal_26.3;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.3,hg002_chrY_paternal_26.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000081;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000081:6;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1244637	1245024	.	-	1	source_transcript=hg002_chrY_paternal_26.3;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.3,hg002_chrY_paternal_26.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000081;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000081:6;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1245025	1249170	.	-	.	source_transcript=hg002_chrY_paternal_26.3;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.3,hg002_chrY_paternal_26.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000081;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000081:6;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1249171	1249279	.	-	.	source_transcript=hg002_chrY_paternal_26.3;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.3,hg002_chrY_paternal_26.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000081;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000081:7;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1249171	1249279	.	-	2	source_transcript=hg002_chrY_paternal_26.3;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.3,hg002_chrY_paternal_26.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000081;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000081:7;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1249280	1252732	.	-	.	source_transcript=hg002_chrY_paternal_26.3;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.3,hg002_chrY_paternal_26.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000081;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000081:7;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1252733	1252794	.	-	.	source_transcript=hg002_chrY_paternal_26.3;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.3,hg002_chrY_paternal_26.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000081;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000081:8;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1252733	1252794	.	-	1	source_transcript=hg002_chrY_paternal_26.3;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.3,hg002_chrY_paternal_26.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000081;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000081:8;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1252795	1253403	.	-	.	source_transcript=hg002_chrY_paternal_26.3;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.3,hg002_chrY_paternal_26.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000081;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000081:8;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1253404	1253468	.	-	.	source_transcript=hg002_chrY_paternal_26.3;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.3,hg002_chrY_paternal_26.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000081;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000081:9;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1253404	1253468	.	-	0	source_transcript=hg002_chrY_paternal_26.3;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.3,hg002_chrY_paternal_26.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000081;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000081:9;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1253469	1259894	.	-	.	source_transcript=hg002_chrY_paternal_26.3;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.3,hg002_chrY_paternal_26.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000081;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000081:9;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1259895	1260026	.	-	.	source_transcript=hg002_chrY_paternal_26.3;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.3,hg002_chrY_paternal_26.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000081;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000081:10;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1259895	1260026	.	-	0	source_transcript=hg002_chrY_paternal_26.3;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.3,hg002_chrY_paternal_26.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000081;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000081:10;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1260027	1270223	.	-	.	source_transcript=hg002_chrY_paternal_26.3;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.3,hg002_chrY_paternal_26.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000081;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000081:10;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1270224	1270385	.	-	.	source_transcript=hg002_chrY_paternal_26.3;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.3,hg002_chrY_paternal_26.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000081;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000081:11;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1270224	1270316	.	-	0	source_transcript=hg002_chrY_paternal_26.3;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.3,hg002_chrY_paternal_26.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000081;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000081:11;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1270314	1270316	.	-	0	source_transcript=hg002_chrY_paternal_26.3;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.3,hg002_chrY_paternal_26.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000081;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=start_codon:HG003_chrY_T0000081;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1221462	1270385	100	-	.	source_transcript=hg002_chrY_paternal_26.4;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.4,hg002_chrY_paternal_26.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_G0000020;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=HG003_chrY_T0000082;Name=ASMTL
HG003_chrY	CAT	exon	1221462	1221812	.	-	.	source_transcript=hg002_chrY_paternal_26.4;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.4,hg002_chrY_paternal_26.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000082;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000082:0;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1221592	1221812	.	-	2	source_transcript=hg002_chrY_paternal_26.4;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.4,hg002_chrY_paternal_26.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000082;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000082:0;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1221592	1221594	.	-	0	source_transcript=hg002_chrY_paternal_26.4;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.4,hg002_chrY_paternal_26.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000082;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=stop_codon:HG003_chrY_T0000082;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1221813	1229608	.	-	.	source_transcript=hg002_chrY_paternal_26.4;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.4,hg002_chrY_paternal_26.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000082;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000082:0;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1229609	1229731	.	-	.	source_transcript=hg002_chrY_paternal_26.4;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.4,hg002_chrY_paternal_26.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000082;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000082:1;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1229609	1229731	.	-	2	source_transcript=hg002_chrY_paternal_26.4;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.4,hg002_chrY_paternal_26.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000082;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000082:1;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1229732	1234862	.	-	.	source_transcript=hg002_chrY_paternal_26.4;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.4,hg002_chrY_paternal_26.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000082;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000082:1;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1234863	1235006	.	-	.	source_transcript=hg002_chrY_paternal_26.4;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.4,hg002_chrY_paternal_26.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000082;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000082:2;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1234863	1235006	.	-	2	source_transcript=hg002_chrY_paternal_26.4;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.4,hg002_chrY_paternal_26.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000082;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000082:2;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1235007	1235871	.	-	.	source_transcript=hg002_chrY_paternal_26.4;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.4,hg002_chrY_paternal_26.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000082;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000082:2;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1235872	1236004	.	-	.	source_transcript=hg002_chrY_paternal_26.4;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.4,hg002_chrY_paternal_26.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000082;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000082:3;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1235872	1236004	.	-	0	source_transcript=hg002_chrY_paternal_26.4;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.4,hg002_chrY_paternal_26.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000082;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000082:3;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1236005	1238560	.	-	.	source_transcript=hg002_chrY_paternal_26.4;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.4,hg002_chrY_paternal_26.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000082;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000082:3;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1238561	1238745	.	-	.	source_transcript=hg002_chrY_paternal_26.4;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.4,hg002_chrY_paternal_26.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000082;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000082:4;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1238561	1238745	.	-	2	source_transcript=hg002_chrY_paternal_26.4;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.4,hg002_chrY_paternal_26.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000082;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000082:4;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1238746	1242427	.	-	.	source_transcript=hg002_chrY_paternal_26.4;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.4,hg002_chrY_paternal_26.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000082;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000082:4;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1242428	1242590	.	-	.	source_transcript=hg002_chrY_paternal_26.4;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.4,hg002_chrY_paternal_26.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000082;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000082:5;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1242428	1242590	.	-	0	source_transcript=hg002_chrY_paternal_26.4;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.4,hg002_chrY_paternal_26.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000082;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000082:5;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1242591	1244636	.	-	.	source_transcript=hg002_chrY_paternal_26.4;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.4,hg002_chrY_paternal_26.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000082;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000082:5;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1244637	1245024	.	-	.	source_transcript=hg002_chrY_paternal_26.4;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.4,hg002_chrY_paternal_26.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000082;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000082:6;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1244637	1245024	.	-	1	source_transcript=hg002_chrY_paternal_26.4;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.4,hg002_chrY_paternal_26.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000082;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000082:6;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1245025	1249170	.	-	.	source_transcript=hg002_chrY_paternal_26.4;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.4,hg002_chrY_paternal_26.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000082;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000082:6;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1249171	1249279	.	-	.	source_transcript=hg002_chrY_paternal_26.4;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.4,hg002_chrY_paternal_26.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000082;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000082:7;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1249171	1249279	.	-	2	source_transcript=hg002_chrY_paternal_26.4;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.4,hg002_chrY_paternal_26.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000082;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000082:7;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1249280	1252732	.	-	.	source_transcript=hg002_chrY_paternal_26.4;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.4,hg002_chrY_paternal_26.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000082;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000082:7;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1252733	1252794	.	-	.	source_transcript=hg002_chrY_paternal_26.4;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.4,hg002_chrY_paternal_26.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000082;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000082:8;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1252733	1252794	.	-	1	source_transcript=hg002_chrY_paternal_26.4;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.4,hg002_chrY_paternal_26.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000082;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000082:8;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1252795	1253403	.	-	.	source_transcript=hg002_chrY_paternal_26.4;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.4,hg002_chrY_paternal_26.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000082;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000082:8;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1253404	1253468	.	-	.	source_transcript=hg002_chrY_paternal_26.4;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.4,hg002_chrY_paternal_26.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000082;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000082:9;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1253404	1253468	.	-	0	source_transcript=hg002_chrY_paternal_26.4;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.4,hg002_chrY_paternal_26.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000082;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000082:9;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1253469	1256805	.	-	.	source_transcript=hg002_chrY_paternal_26.4;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.4,hg002_chrY_paternal_26.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000082;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000082:9;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1256806	1256853	.	-	.	source_transcript=hg002_chrY_paternal_26.4;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.4,hg002_chrY_paternal_26.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000082;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000082:10;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1256806	1256853	.	-	0	source_transcript=hg002_chrY_paternal_26.4;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.4,hg002_chrY_paternal_26.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000082;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000082:10;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1256854	1259894	.	-	.	source_transcript=hg002_chrY_paternal_26.4;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.4,hg002_chrY_paternal_26.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000082;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000082:10;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1259895	1260026	.	-	.	source_transcript=hg002_chrY_paternal_26.4;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.4,hg002_chrY_paternal_26.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000082;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000082:11;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1259895	1260026	.	-	0	source_transcript=hg002_chrY_paternal_26.4;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.4,hg002_chrY_paternal_26.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000082;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000082:11;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1260027	1270223	.	-	.	source_transcript=hg002_chrY_paternal_26.4;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.4,hg002_chrY_paternal_26.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000082;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000082:11;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1270224	1270385	.	-	.	source_transcript=hg002_chrY_paternal_26.4;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.4,hg002_chrY_paternal_26.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000082;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000082:12;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1270224	1270316	.	-	0	source_transcript=hg002_chrY_paternal_26.4;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.4,hg002_chrY_paternal_26.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000082;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000082:12;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1270314	1270316	.	-	0	source_transcript=hg002_chrY_paternal_26.4;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.4,hg002_chrY_paternal_26.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000082;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=start_codon:HG003_chrY_T0000082;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1221462	1270385	100	-	.	source_transcript=hg002_chrY_paternal_26.5;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.5,hg002_chrY_paternal_26.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000083;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_G0000020;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=HG003_chrY_T0000083;Name=ASMTL
HG003_chrY	CAT	exon	1221462	1221812	.	-	.	source_transcript=hg002_chrY_paternal_26.5;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.5,hg002_chrY_paternal_26.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000083;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000083;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000083:0;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1221592	1221812	.	-	2	source_transcript=hg002_chrY_paternal_26.5;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.5,hg002_chrY_paternal_26.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000083;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000083;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000083:0;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1221592	1221594	.	-	0	source_transcript=hg002_chrY_paternal_26.5;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.5,hg002_chrY_paternal_26.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000083;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000083;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=stop_codon:HG003_chrY_T0000083;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1221813	1229608	.	-	.	source_transcript=hg002_chrY_paternal_26.5;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.5,hg002_chrY_paternal_26.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000083;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000083;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000083:0;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1229609	1229731	.	-	.	source_transcript=hg002_chrY_paternal_26.5;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.5,hg002_chrY_paternal_26.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000083;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000083;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000083:1;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1229609	1229731	.	-	2	source_transcript=hg002_chrY_paternal_26.5;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.5,hg002_chrY_paternal_26.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000083;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000083;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000083:1;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1229732	1234862	.	-	.	source_transcript=hg002_chrY_paternal_26.5;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.5,hg002_chrY_paternal_26.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000083;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000083;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000083:1;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1234863	1235006	.	-	.	source_transcript=hg002_chrY_paternal_26.5;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.5,hg002_chrY_paternal_26.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000083;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000083;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000083:2;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1234863	1235006	.	-	2	source_transcript=hg002_chrY_paternal_26.5;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.5,hg002_chrY_paternal_26.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000083;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000083;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000083:2;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1235007	1235871	.	-	.	source_transcript=hg002_chrY_paternal_26.5;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.5,hg002_chrY_paternal_26.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000083;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000083;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000083:2;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1235872	1236004	.	-	.	source_transcript=hg002_chrY_paternal_26.5;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.5,hg002_chrY_paternal_26.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000083;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000083;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000083:3;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1235872	1236004	.	-	0	source_transcript=hg002_chrY_paternal_26.5;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.5,hg002_chrY_paternal_26.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000083;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000083;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000083:3;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1236005	1238560	.	-	.	source_transcript=hg002_chrY_paternal_26.5;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.5,hg002_chrY_paternal_26.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000083;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000083;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000083:3;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1238561	1238745	.	-	.	source_transcript=hg002_chrY_paternal_26.5;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.5,hg002_chrY_paternal_26.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000083;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000083;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000083:4;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1238561	1238745	.	-	2	source_transcript=hg002_chrY_paternal_26.5;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.5,hg002_chrY_paternal_26.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000083;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000083;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000083:4;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1238746	1242427	.	-	.	source_transcript=hg002_chrY_paternal_26.5;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.5,hg002_chrY_paternal_26.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000083;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000083;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000083:4;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1242428	1242590	.	-	.	source_transcript=hg002_chrY_paternal_26.5;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.5,hg002_chrY_paternal_26.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000083;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000083;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000083:5;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1242428	1242590	.	-	0	source_transcript=hg002_chrY_paternal_26.5;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.5,hg002_chrY_paternal_26.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000083;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000083;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000083:5;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1242591	1244636	.	-	.	source_transcript=hg002_chrY_paternal_26.5;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.5,hg002_chrY_paternal_26.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000083;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000083;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000083:5;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1244637	1245024	.	-	.	source_transcript=hg002_chrY_paternal_26.5;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.5,hg002_chrY_paternal_26.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000083;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000083;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000083:6;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1244637	1245024	.	-	1	source_transcript=hg002_chrY_paternal_26.5;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.5,hg002_chrY_paternal_26.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000083;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000083;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000083:6;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1245025	1249170	.	-	.	source_transcript=hg002_chrY_paternal_26.5;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.5,hg002_chrY_paternal_26.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000083;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000083;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000083:6;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1249171	1249279	.	-	.	source_transcript=hg002_chrY_paternal_26.5;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.5,hg002_chrY_paternal_26.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000083;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000083;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000083:7;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1249171	1249279	.	-	2	source_transcript=hg002_chrY_paternal_26.5;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.5,hg002_chrY_paternal_26.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000083;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000083;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000083:7;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1249280	1252732	.	-	.	source_transcript=hg002_chrY_paternal_26.5;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.5,hg002_chrY_paternal_26.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000083;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000083;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000083:7;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1252733	1252794	.	-	.	source_transcript=hg002_chrY_paternal_26.5;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.5,hg002_chrY_paternal_26.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000083;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000083;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000083:8;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1252733	1252794	.	-	1	source_transcript=hg002_chrY_paternal_26.5;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.5,hg002_chrY_paternal_26.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000083;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000083;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000083:8;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1252795	1256805	.	-	.	source_transcript=hg002_chrY_paternal_26.5;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.5,hg002_chrY_paternal_26.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000083;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000083;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000083:8;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1256806	1256853	.	-	.	source_transcript=hg002_chrY_paternal_26.5;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.5,hg002_chrY_paternal_26.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000083;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000083;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000083:9;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1256806	1256853	.	-	1	source_transcript=hg002_chrY_paternal_26.5;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.5,hg002_chrY_paternal_26.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000083;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000083;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000083:9;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1256854	1259894	.	-	.	source_transcript=hg002_chrY_paternal_26.5;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.5,hg002_chrY_paternal_26.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000083;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000083;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000083:9;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1259895	1260026	.	-	.	source_transcript=hg002_chrY_paternal_26.5;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.5,hg002_chrY_paternal_26.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000083;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000083;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000083:10;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1259895	1259956	.	-	0	source_transcript=hg002_chrY_paternal_26.5;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.5,hg002_chrY_paternal_26.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000083;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000083;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000083:10;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1259954	1259956	.	-	0	source_transcript=hg002_chrY_paternal_26.5;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.5,hg002_chrY_paternal_26.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000083;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000083;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=start_codon:HG003_chrY_T0000083;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1260027	1270223	.	-	.	source_transcript=hg002_chrY_paternal_26.5;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.5,hg002_chrY_paternal_26.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000083;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000083;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000083:10;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1270224	1270385	.	-	.	source_transcript=hg002_chrY_paternal_26.5;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.5,hg002_chrY_paternal_26.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000083;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000083;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000083:11;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1221462	1271232	100	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6,hg002_chrY_paternal_26.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_G0000020;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=HG003_chrY_T0000084;Name=ASMTL
HG003_chrY	CAT	exon	1221462	1221812	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6,hg002_chrY_paternal_26.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000084;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000084:0;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1221592	1221812	.	-	2	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6,hg002_chrY_paternal_26.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000084;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000084:0;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1221592	1221594	.	-	0	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6,hg002_chrY_paternal_26.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000084;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=stop_codon:HG003_chrY_T0000084;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1221813	1229608	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6,hg002_chrY_paternal_26.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000084;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000084:0;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1229609	1229731	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6,hg002_chrY_paternal_26.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000084;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000084:1;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1229609	1229731	.	-	2	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6,hg002_chrY_paternal_26.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000084;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000084:1;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1229732	1234862	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6,hg002_chrY_paternal_26.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000084;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000084:1;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1234863	1235006	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6,hg002_chrY_paternal_26.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000084;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000084:2;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1234863	1235006	.	-	2	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6,hg002_chrY_paternal_26.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000084;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000084:2;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1235007	1235871	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6,hg002_chrY_paternal_26.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000084;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000084:2;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1235872	1236004	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6,hg002_chrY_paternal_26.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000084;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000084:3;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1235872	1236004	.	-	0	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6,hg002_chrY_paternal_26.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000084;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000084:3;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1236005	1238560	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6,hg002_chrY_paternal_26.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000084;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000084:3;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1238561	1238745	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6,hg002_chrY_paternal_26.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000084;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000084:4;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1238561	1238745	.	-	2	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6,hg002_chrY_paternal_26.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000084;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000084:4;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1238746	1242427	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6,hg002_chrY_paternal_26.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000084;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000084:4;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1242428	1242590	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6,hg002_chrY_paternal_26.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000084;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000084:5;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1242428	1242590	.	-	0	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6,hg002_chrY_paternal_26.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000084;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000084:5;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1242591	1244636	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6,hg002_chrY_paternal_26.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000084;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000084:5;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1244637	1245024	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6,hg002_chrY_paternal_26.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000084;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000084:6;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1244637	1245024	.	-	1	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6,hg002_chrY_paternal_26.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000084;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000084:6;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1245025	1249170	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6,hg002_chrY_paternal_26.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000084;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000084:6;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1249171	1249279	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6,hg002_chrY_paternal_26.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000084;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000084:7;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1249171	1249279	.	-	2	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6,hg002_chrY_paternal_26.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000084;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000084:7;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1249280	1252732	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6,hg002_chrY_paternal_26.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000084;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000084:7;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1252733	1252794	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6,hg002_chrY_paternal_26.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000084;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000084:8;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1252733	1252794	.	-	1	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6,hg002_chrY_paternal_26.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000084;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000084:8;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1252795	1253403	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6,hg002_chrY_paternal_26.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000084;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000084:8;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1253404	1253468	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6,hg002_chrY_paternal_26.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000084;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000084:9;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1253404	1253468	.	-	0	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6,hg002_chrY_paternal_26.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000084;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000084:9;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1253469	1256805	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6,hg002_chrY_paternal_26.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000084;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000084:9;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1256806	1256853	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6,hg002_chrY_paternal_26.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000084;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000084:10;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1256806	1256853	.	-	0	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6,hg002_chrY_paternal_26.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000084;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000084:10;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1256854	1259894	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6,hg002_chrY_paternal_26.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000084;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000084:10;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1259895	1260026	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6,hg002_chrY_paternal_26.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000084;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000084:11;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1259895	1259945	.	-	0	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6,hg002_chrY_paternal_26.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000084;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000084:11;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1259943	1259945	.	-	0	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6,hg002_chrY_paternal_26.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000084;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=start_codon:HG003_chrY_T0000084;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1260027	1271093	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6,hg002_chrY_paternal_26.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000084;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000084:11;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1271094	1271232	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6,hg002_chrY_paternal_26.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000084;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000084:12;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1221462	1271232	100	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7,hg002_chrY_paternal_26.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_G0000020;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=HG003_chrY_T0000085;Name=ASMTL
HG003_chrY	CAT	exon	1221462	1221812	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7,hg002_chrY_paternal_26.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000085;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000085:0;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1221592	1221812	.	-	2	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7,hg002_chrY_paternal_26.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000085;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000085:0;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1221592	1221594	.	-	0	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7,hg002_chrY_paternal_26.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000085;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=stop_codon:HG003_chrY_T0000085;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1221813	1229608	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7,hg002_chrY_paternal_26.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000085;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000085:0;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1229609	1229731	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7,hg002_chrY_paternal_26.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000085;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000085:1;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1229609	1229731	.	-	2	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7,hg002_chrY_paternal_26.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000085;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000085:1;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1229732	1234862	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7,hg002_chrY_paternal_26.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000085;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000085:1;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1234863	1235006	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7,hg002_chrY_paternal_26.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000085;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000085:2;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1234863	1235006	.	-	2	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7,hg002_chrY_paternal_26.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000085;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000085:2;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1235007	1235871	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7,hg002_chrY_paternal_26.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000085;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000085:2;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1235872	1236004	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7,hg002_chrY_paternal_26.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000085;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000085:3;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1235872	1236004	.	-	0	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7,hg002_chrY_paternal_26.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000085;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000085:3;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1236005	1238560	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7,hg002_chrY_paternal_26.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000085;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000085:3;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1238561	1238745	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7,hg002_chrY_paternal_26.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000085;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000085:4;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1238561	1238745	.	-	2	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7,hg002_chrY_paternal_26.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000085;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000085:4;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1238746	1242427	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7,hg002_chrY_paternal_26.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000085;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000085:4;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1242428	1242590	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7,hg002_chrY_paternal_26.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000085;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000085:5;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1242428	1242590	.	-	0	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7,hg002_chrY_paternal_26.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000085;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000085:5;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1242591	1244636	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7,hg002_chrY_paternal_26.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000085;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000085:5;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1244637	1245024	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7,hg002_chrY_paternal_26.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000085;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000085:6;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1244637	1245024	.	-	1	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7,hg002_chrY_paternal_26.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000085;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000085:6;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1245025	1249170	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7,hg002_chrY_paternal_26.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000085;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000085:6;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1249171	1249279	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7,hg002_chrY_paternal_26.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000085;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000085:7;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1249171	1249279	.	-	2	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7,hg002_chrY_paternal_26.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000085;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000085:7;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1249280	1252732	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7,hg002_chrY_paternal_26.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000085;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000085:7;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1252733	1252794	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7,hg002_chrY_paternal_26.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000085;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000085:8;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1252733	1252794	.	-	1	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7,hg002_chrY_paternal_26.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000085;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000085:8;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1252795	1253403	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7,hg002_chrY_paternal_26.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000085;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000085:8;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1253404	1253468	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7,hg002_chrY_paternal_26.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000085;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000085:9;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1253404	1253468	.	-	0	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7,hg002_chrY_paternal_26.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000085;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000085:9;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1253469	1256805	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7,hg002_chrY_paternal_26.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000085;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000085:9;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1256806	1256853	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7,hg002_chrY_paternal_26.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000085;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000085:10;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1256806	1256853	.	-	0	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7,hg002_chrY_paternal_26.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000085;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000085:10;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1256854	1259894	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7,hg002_chrY_paternal_26.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000085;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000085:10;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1259895	1260026	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7,hg002_chrY_paternal_26.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000085;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000085:11;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1259895	1260026	.	-	0	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7,hg002_chrY_paternal_26.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000085;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000085:11;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1260027	1270223	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7,hg002_chrY_paternal_26.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000085;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000085:11;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1270224	1270382	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7,hg002_chrY_paternal_26.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000085;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000085:12;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1270224	1270316	.	-	0	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7,hg002_chrY_paternal_26.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000085;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000085:12;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1270314	1270316	.	-	0	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7,hg002_chrY_paternal_26.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000085;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=start_codon:HG003_chrY_T0000085;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1270383	1271093	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7,hg002_chrY_paternal_26.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000085;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000085:12;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1271094	1271232	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7,hg002_chrY_paternal_26.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000085;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000085:13;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1221462	1271232	100	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8,hg002_chrY_paternal_26.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_G0000020;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=HG003_chrY_T0000086;Name=ASMTL
HG003_chrY	CAT	exon	1221462	1221812	.	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8,hg002_chrY_paternal_26.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000086;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000086:0;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1221592	1221812	.	-	2	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8,hg002_chrY_paternal_26.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000086;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000086:0;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1221592	1221594	.	-	0	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8,hg002_chrY_paternal_26.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000086;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=stop_codon:HG003_chrY_T0000086;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1221813	1229608	.	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8,hg002_chrY_paternal_26.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000086;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000086:0;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1229609	1229731	.	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8,hg002_chrY_paternal_26.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000086;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000086:1;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1229609	1229731	.	-	2	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8,hg002_chrY_paternal_26.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000086;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000086:1;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1229732	1234862	.	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8,hg002_chrY_paternal_26.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000086;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000086:1;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1234863	1235006	.	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8,hg002_chrY_paternal_26.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000086;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000086:2;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1234863	1235006	.	-	2	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8,hg002_chrY_paternal_26.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000086;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000086:2;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1235007	1235871	.	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8,hg002_chrY_paternal_26.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000086;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000086:2;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1235872	1236004	.	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8,hg002_chrY_paternal_26.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000086;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000086:3;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1235872	1236004	.	-	0	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8,hg002_chrY_paternal_26.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000086;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000086:3;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1236005	1238560	.	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8,hg002_chrY_paternal_26.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000086;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000086:3;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1238561	1238745	.	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8,hg002_chrY_paternal_26.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000086;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000086:4;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1238561	1238745	.	-	2	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8,hg002_chrY_paternal_26.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000086;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000086:4;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1238746	1242427	.	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8,hg002_chrY_paternal_26.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000086;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000086:4;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1242428	1242590	.	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8,hg002_chrY_paternal_26.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000086;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000086:5;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1242428	1242590	.	-	0	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8,hg002_chrY_paternal_26.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000086;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000086:5;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1242591	1244636	.	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8,hg002_chrY_paternal_26.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000086;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000086:5;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1244637	1245024	.	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8,hg002_chrY_paternal_26.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000086;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000086:6;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1244637	1245024	.	-	1	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8,hg002_chrY_paternal_26.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000086;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000086:6;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1245025	1249170	.	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8,hg002_chrY_paternal_26.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000086;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000086:6;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1249171	1249279	.	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8,hg002_chrY_paternal_26.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000086;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000086:7;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1249171	1249279	.	-	2	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8,hg002_chrY_paternal_26.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000086;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000086:7;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1249280	1252732	.	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8,hg002_chrY_paternal_26.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000086;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000086:7;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1252733	1252794	.	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8,hg002_chrY_paternal_26.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000086;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000086:8;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1252733	1252794	.	-	1	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8,hg002_chrY_paternal_26.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000086;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000086:8;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1252795	1256805	.	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8,hg002_chrY_paternal_26.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000086;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000086:8;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1256806	1256853	.	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8,hg002_chrY_paternal_26.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000086;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000086:9;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1256806	1256853	.	-	1	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8,hg002_chrY_paternal_26.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000086;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000086:9;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1256854	1259894	.	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8,hg002_chrY_paternal_26.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000086;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000086:9;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1259895	1260026	.	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8,hg002_chrY_paternal_26.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000086;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000086:10;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1259895	1259956	.	-	0	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8,hg002_chrY_paternal_26.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000086;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000086:10;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1259954	1259956	.	-	0	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8,hg002_chrY_paternal_26.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000086;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=start_codon:HG003_chrY_T0000086;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1260027	1271093	.	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8,hg002_chrY_paternal_26.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000086;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:HG003_chrY_T0000086:10;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1271094	1271232	.	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8,hg002_chrY_paternal_26.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000086;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:HG003_chrY_T0000086:11;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	1280448	1356010	.	-	.	source_gene_common_name=P2RY8;source_gene=hg002_chrY_paternal_27;alternative_source_transcripts=hg002_chrY_paternal_27.1,hg002_chrY_paternal_27.1;gene_id=HG003_chrY_G0000021;gene_biotype=protein_coding;gene_name=P2RY8;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000021;Name=P2RY8
HG003_chrY	CAT	transcript	1280448	1285587	100	-	.	source_transcript=hg002_chrY_paternal_27.1;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.1,hg002_chrY_paternal_27.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000087;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_G0000021;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=HG003_chrY_T0000087;Name=P2RY8
HG003_chrY	CAT	exon	1280448	1284447	.	-	.	source_transcript=hg002_chrY_paternal_27.1;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.1,hg002_chrY_paternal_27.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000087;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000087;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=exon:HG003_chrY_T0000087:0;Name=P2RY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1283344	1284423	.	-	0	source_transcript=hg002_chrY_paternal_27.1;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.1,hg002_chrY_paternal_27.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000087;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000087;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=CDS:HG003_chrY_T0000087:0;Name=P2RY8;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1283344	1283346	.	-	0	source_transcript=hg002_chrY_paternal_27.1;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.1,hg002_chrY_paternal_27.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000087;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000087;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=stop_codon:HG003_chrY_T0000087;Name=P2RY8;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1284421	1284423	.	-	0	source_transcript=hg002_chrY_paternal_27.1;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.1,hg002_chrY_paternal_27.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000087;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000087;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=start_codon:HG003_chrY_T0000087;Name=P2RY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1284448	1284895	.	-	.	source_transcript=hg002_chrY_paternal_27.1;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.1,hg002_chrY_paternal_27.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000087;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000087;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=intron:HG003_chrY_T0000087:0;Name=P2RY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1284896	1285587	.	-	.	source_transcript=hg002_chrY_paternal_27.1;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.1,hg002_chrY_paternal_27.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000087;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000087;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=exon:HG003_chrY_T0000087:1;Name=P2RY8;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1280448	1311626	100	-	.	source_transcript=hg002_chrY_paternal_27.2;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.2,hg002_chrY_paternal_27.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000088;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_G0000021;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=HG003_chrY_T0000088;Name=P2RY8
HG003_chrY	CAT	exon	1280448	1284447	.	-	.	source_transcript=hg002_chrY_paternal_27.2;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.2,hg002_chrY_paternal_27.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000088;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000088;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=exon:HG003_chrY_T0000088:0;Name=P2RY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1283344	1284423	.	-	0	source_transcript=hg002_chrY_paternal_27.2;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.2,hg002_chrY_paternal_27.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000088;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000088;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=CDS:HG003_chrY_T0000088:0;Name=P2RY8;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1283344	1283346	.	-	0	source_transcript=hg002_chrY_paternal_27.2;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.2,hg002_chrY_paternal_27.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000088;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000088;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=stop_codon:HG003_chrY_T0000088;Name=P2RY8;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1284421	1284423	.	-	0	source_transcript=hg002_chrY_paternal_27.2;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.2,hg002_chrY_paternal_27.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000088;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000088;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=start_codon:HG003_chrY_T0000088;Name=P2RY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1284448	1311571	.	-	.	source_transcript=hg002_chrY_paternal_27.2;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.2,hg002_chrY_paternal_27.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000088;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000088;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=intron:HG003_chrY_T0000088:0;Name=P2RY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1311572	1311626	.	-	.	source_transcript=hg002_chrY_paternal_27.2;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.2,hg002_chrY_paternal_27.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000088;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000088;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=exon:HG003_chrY_T0000088:1;Name=P2RY8;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1280448	1313251	100	-	.	source_transcript=hg002_chrY_paternal_27.3;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.3,hg002_chrY_paternal_27.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000089;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_G0000021;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=HG003_chrY_T0000089;Name=P2RY8
HG003_chrY	CAT	exon	1280448	1284447	.	-	.	source_transcript=hg002_chrY_paternal_27.3;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.3,hg002_chrY_paternal_27.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000089;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000089;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=exon:HG003_chrY_T0000089:0;Name=P2RY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1283344	1284423	.	-	0	source_transcript=hg002_chrY_paternal_27.3;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.3,hg002_chrY_paternal_27.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000089;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000089;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=CDS:HG003_chrY_T0000089:0;Name=P2RY8;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1283344	1283346	.	-	0	source_transcript=hg002_chrY_paternal_27.3;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.3,hg002_chrY_paternal_27.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000089;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000089;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=stop_codon:HG003_chrY_T0000089;Name=P2RY8;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1284421	1284423	.	-	0	source_transcript=hg002_chrY_paternal_27.3;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.3,hg002_chrY_paternal_27.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000089;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000089;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=start_codon:HG003_chrY_T0000089;Name=P2RY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1284448	1312634	.	-	.	source_transcript=hg002_chrY_paternal_27.3;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.3,hg002_chrY_paternal_27.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000089;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000089;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=intron:HG003_chrY_T0000089:0;Name=P2RY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1312635	1313251	.	-	.	source_transcript=hg002_chrY_paternal_27.3;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.3,hg002_chrY_paternal_27.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000089;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000089;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=exon:HG003_chrY_T0000089:1;Name=P2RY8;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1280448	1356010	100	-	.	source_transcript=hg002_chrY_paternal_27.4;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.4,hg002_chrY_paternal_27.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000090;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_G0000021;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=HG003_chrY_T0000090;Name=P2RY8
HG003_chrY	CAT	exon	1280448	1284447	.	-	.	source_transcript=hg002_chrY_paternal_27.4;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.4,hg002_chrY_paternal_27.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000090;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000090;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=exon:HG003_chrY_T0000090:0;Name=P2RY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1283344	1284423	.	-	0	source_transcript=hg002_chrY_paternal_27.4;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.4,hg002_chrY_paternal_27.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000090;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000090;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=CDS:HG003_chrY_T0000090:0;Name=P2RY8;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1283344	1283346	.	-	0	source_transcript=hg002_chrY_paternal_27.4;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.4,hg002_chrY_paternal_27.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000090;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000090;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=stop_codon:HG003_chrY_T0000090;Name=P2RY8;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1284421	1284423	.	-	0	source_transcript=hg002_chrY_paternal_27.4;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.4,hg002_chrY_paternal_27.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000090;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000090;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=start_codon:HG003_chrY_T0000090;Name=P2RY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1284448	1355745	.	-	.	source_transcript=hg002_chrY_paternal_27.4;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.4,hg002_chrY_paternal_27.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000090;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000090;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=intron:HG003_chrY_T0000090:0;Name=P2RY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1355746	1356010	.	-	.	source_transcript=hg002_chrY_paternal_27.4;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.4,hg002_chrY_paternal_27.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000090;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000090;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=exon:HG003_chrY_T0000090:1;Name=P2RY8;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1280448	1356010	100	-	.	source_transcript=hg002_chrY_paternal_27.5;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.5,hg002_chrY_paternal_27.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000091;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_G0000021;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=HG003_chrY_T0000091;Name=P2RY8
HG003_chrY	CAT	exon	1280448	1284447	.	-	.	source_transcript=hg002_chrY_paternal_27.5;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.5,hg002_chrY_paternal_27.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000091;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000091;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=exon:HG003_chrY_T0000091:0;Name=P2RY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1283344	1284423	.	-	0	source_transcript=hg002_chrY_paternal_27.5;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.5,hg002_chrY_paternal_27.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000091;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000091;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=CDS:HG003_chrY_T0000091:0;Name=P2RY8;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1283344	1283346	.	-	0	source_transcript=hg002_chrY_paternal_27.5;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.5,hg002_chrY_paternal_27.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000091;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000091;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=stop_codon:HG003_chrY_T0000091;Name=P2RY8;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1284421	1284423	.	-	0	source_transcript=hg002_chrY_paternal_27.5;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.5,hg002_chrY_paternal_27.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000091;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000091;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=start_codon:HG003_chrY_T0000091;Name=P2RY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1284448	1286366	.	-	.	source_transcript=hg002_chrY_paternal_27.5;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.5,hg002_chrY_paternal_27.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000091;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000091;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=intron:HG003_chrY_T0000091:0;Name=P2RY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1286367	1286535	.	-	.	source_transcript=hg002_chrY_paternal_27.5;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.5,hg002_chrY_paternal_27.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000091;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000091;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=exon:HG003_chrY_T0000091:1;Name=P2RY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1286536	1355745	.	-	.	source_transcript=hg002_chrY_paternal_27.5;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.5,hg002_chrY_paternal_27.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000091;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000091;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=intron:HG003_chrY_T0000091:1;Name=P2RY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1355746	1356010	.	-	.	source_transcript=hg002_chrY_paternal_27.5;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.5,hg002_chrY_paternal_27.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000091;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000091;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=exon:HG003_chrY_T0000091:2;Name=P2RY8;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	1410481	1421138	.	+	.	source_gene_common_name=AKAP17A;source_gene=hg002_chrY_paternal_28;alternative_source_transcripts=hg002_chrY_paternal_28.1,hg002_chrY_paternal_28.1;gene_id=HG003_chrY_G0000022;gene_biotype=protein_coding;gene_name=AKAP17A;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000022;Name=AKAP17A
HG003_chrY	CAT	transcript	1410481	1421138	100	+	.	source_transcript=hg002_chrY_paternal_28.1;source_transcript_name=hg002_chrY_paternal_28.2;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_28.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.1,hg002_chrY_paternal_28.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000092;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_G0000022;transcript_name=hg002_chrY_paternal_28.2;gene_name=AKAP17A;ID=HG003_chrY_T0000092;Name=AKAP17A
HG003_chrY	CAT	exon	1410481	1410646	.	+	.	source_transcript=hg002_chrY_paternal_28.1;source_transcript_name=hg002_chrY_paternal_28.2;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_28.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.1,hg002_chrY_paternal_28.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000092;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000092;transcript_name=hg002_chrY_paternal_28.2;gene_name=AKAP17A;ID=exon:HG003_chrY_T0000092:0;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1410647	1412320	.	+	.	source_transcript=hg002_chrY_paternal_28.1;source_transcript_name=hg002_chrY_paternal_28.2;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_28.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.1,hg002_chrY_paternal_28.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000092;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000092;transcript_name=hg002_chrY_paternal_28.2;gene_name=AKAP17A;ID=intron:HG003_chrY_T0000092:0;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1412321	1413101	.	+	.	source_transcript=hg002_chrY_paternal_28.1;source_transcript_name=hg002_chrY_paternal_28.2;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_28.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.1,hg002_chrY_paternal_28.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000092;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000092;transcript_name=hg002_chrY_paternal_28.2;gene_name=AKAP17A;ID=exon:HG003_chrY_T0000092:1;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1412340	1413101	.	+	0	source_transcript=hg002_chrY_paternal_28.1;source_transcript_name=hg002_chrY_paternal_28.2;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_28.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.1,hg002_chrY_paternal_28.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000092;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000092;transcript_name=hg002_chrY_paternal_28.2;gene_name=AKAP17A;ID=CDS:HG003_chrY_T0000092:0;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1412340	1412342	.	+	0	source_transcript=hg002_chrY_paternal_28.1;source_transcript_name=hg002_chrY_paternal_28.2;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_28.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.1,hg002_chrY_paternal_28.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000092;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000092;transcript_name=hg002_chrY_paternal_28.2;gene_name=AKAP17A;ID=start_codon:HG003_chrY_T0000092;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1413102	1414253	.	+	.	source_transcript=hg002_chrY_paternal_28.1;source_transcript_name=hg002_chrY_paternal_28.2;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_28.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.1,hg002_chrY_paternal_28.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000092;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000092;transcript_name=hg002_chrY_paternal_28.2;gene_name=AKAP17A;ID=intron:HG003_chrY_T0000092:1;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1414254	1414402	.	+	.	source_transcript=hg002_chrY_paternal_28.1;source_transcript_name=hg002_chrY_paternal_28.2;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_28.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.1,hg002_chrY_paternal_28.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000092;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000092;transcript_name=hg002_chrY_paternal_28.2;gene_name=AKAP17A;ID=exon:HG003_chrY_T0000092:2;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1414254	1414402	.	+	0	source_transcript=hg002_chrY_paternal_28.1;source_transcript_name=hg002_chrY_paternal_28.2;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_28.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.1,hg002_chrY_paternal_28.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000092;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000092;transcript_name=hg002_chrY_paternal_28.2;gene_name=AKAP17A;ID=CDS:HG003_chrY_T0000092:1;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1414403	1417809	.	+	.	source_transcript=hg002_chrY_paternal_28.1;source_transcript_name=hg002_chrY_paternal_28.2;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_28.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.1,hg002_chrY_paternal_28.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000092;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000092;transcript_name=hg002_chrY_paternal_28.2;gene_name=AKAP17A;ID=intron:HG003_chrY_T0000092:2;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1417810	1418050	.	+	.	source_transcript=hg002_chrY_paternal_28.1;source_transcript_name=hg002_chrY_paternal_28.2;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_28.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.1,hg002_chrY_paternal_28.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000092;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000092;transcript_name=hg002_chrY_paternal_28.2;gene_name=AKAP17A;ID=exon:HG003_chrY_T0000092:3;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1417810	1418050	.	+	1	source_transcript=hg002_chrY_paternal_28.1;source_transcript_name=hg002_chrY_paternal_28.2;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_28.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.1,hg002_chrY_paternal_28.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000092;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000092;transcript_name=hg002_chrY_paternal_28.2;gene_name=AKAP17A;ID=CDS:HG003_chrY_T0000092:2;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1418051	1419276	.	+	.	source_transcript=hg002_chrY_paternal_28.1;source_transcript_name=hg002_chrY_paternal_28.2;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_28.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.1,hg002_chrY_paternal_28.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000092;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000092;transcript_name=hg002_chrY_paternal_28.2;gene_name=AKAP17A;ID=intron:HG003_chrY_T0000092:3;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1419277	1421138	.	+	.	source_transcript=hg002_chrY_paternal_28.1;source_transcript_name=hg002_chrY_paternal_28.2;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_28.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.1,hg002_chrY_paternal_28.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000092;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000092;transcript_name=hg002_chrY_paternal_28.2;gene_name=AKAP17A;ID=exon:HG003_chrY_T0000092:4;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1419277	1420212	.	+	0	source_transcript=hg002_chrY_paternal_28.1;source_transcript_name=hg002_chrY_paternal_28.2;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_28.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.1,hg002_chrY_paternal_28.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000092;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000092;transcript_name=hg002_chrY_paternal_28.2;gene_name=AKAP17A;ID=CDS:HG003_chrY_T0000092:3;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1420210	1420212	.	+	0	source_transcript=hg002_chrY_paternal_28.1;source_transcript_name=hg002_chrY_paternal_28.2;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_28.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.1,hg002_chrY_paternal_28.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000092;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000092;transcript_name=hg002_chrY_paternal_28.2;gene_name=AKAP17A;ID=stop_codon:HG003_chrY_T0000092;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1410481	1421138	1000	+	.	source_transcript=hg002_chrY_paternal_28.2;source_transcript_name=hg002_chrY_paternal_28.1;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_28.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.2,hg002_chrY_paternal_28.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000093;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_G0000022;transcript_name=hg002_chrY_paternal_28.1;gene_name=AKAP17A;ID=HG003_chrY_T0000093;Name=AKAP17A
HG003_chrY	CAT	exon	1410481	1410646	.	+	.	source_transcript=hg002_chrY_paternal_28.2;source_transcript_name=hg002_chrY_paternal_28.1;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_28.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.2,hg002_chrY_paternal_28.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000093;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000093;transcript_name=hg002_chrY_paternal_28.1;gene_name=AKAP17A;ID=exon:HG003_chrY_T0000093:0;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1410647	1412320	.	+	.	source_transcript=hg002_chrY_paternal_28.2;source_transcript_name=hg002_chrY_paternal_28.1;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_28.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.2,hg002_chrY_paternal_28.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000093;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000093;transcript_name=hg002_chrY_paternal_28.1;gene_name=AKAP17A;ID=intron:HG003_chrY_T0000093:0;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1412321	1413101	.	+	.	source_transcript=hg002_chrY_paternal_28.2;source_transcript_name=hg002_chrY_paternal_28.1;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_28.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.2,hg002_chrY_paternal_28.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000093;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000093;transcript_name=hg002_chrY_paternal_28.1;gene_name=AKAP17A;ID=exon:HG003_chrY_T0000093:1;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1413102	1414253	.	+	.	source_transcript=hg002_chrY_paternal_28.2;source_transcript_name=hg002_chrY_paternal_28.1;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_28.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.2,hg002_chrY_paternal_28.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000093;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000093;transcript_name=hg002_chrY_paternal_28.1;gene_name=AKAP17A;ID=intron:HG003_chrY_T0000093:1;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1414254	1414402	.	+	.	source_transcript=hg002_chrY_paternal_28.2;source_transcript_name=hg002_chrY_paternal_28.1;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_28.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.2,hg002_chrY_paternal_28.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000093;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000093;transcript_name=hg002_chrY_paternal_28.1;gene_name=AKAP17A;ID=exon:HG003_chrY_T0000093:2;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1414403	1417809	.	+	.	source_transcript=hg002_chrY_paternal_28.2;source_transcript_name=hg002_chrY_paternal_28.1;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_28.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.2,hg002_chrY_paternal_28.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000093;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000093;transcript_name=hg002_chrY_paternal_28.1;gene_name=AKAP17A;ID=intron:HG003_chrY_T0000093:2;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1417810	1418050	.	+	.	source_transcript=hg002_chrY_paternal_28.2;source_transcript_name=hg002_chrY_paternal_28.1;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_28.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.2,hg002_chrY_paternal_28.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000093;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000093;transcript_name=hg002_chrY_paternal_28.1;gene_name=AKAP17A;ID=exon:HG003_chrY_T0000093:3;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1418051	1418755	.	+	.	source_transcript=hg002_chrY_paternal_28.2;source_transcript_name=hg002_chrY_paternal_28.1;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_28.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.2,hg002_chrY_paternal_28.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000093;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000093;transcript_name=hg002_chrY_paternal_28.1;gene_name=AKAP17A;ID=intron:HG003_chrY_T0000093:3;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1418756	1418825	.	+	.	source_transcript=hg002_chrY_paternal_28.2;source_transcript_name=hg002_chrY_paternal_28.1;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_28.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.2,hg002_chrY_paternal_28.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000093;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000093;transcript_name=hg002_chrY_paternal_28.1;gene_name=AKAP17A;ID=exon:HG003_chrY_T0000093:4;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1418826	1419276	.	+	.	source_transcript=hg002_chrY_paternal_28.2;source_transcript_name=hg002_chrY_paternal_28.1;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_28.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.2,hg002_chrY_paternal_28.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000093;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000093;transcript_name=hg002_chrY_paternal_28.1;gene_name=AKAP17A;ID=intron:HG003_chrY_T0000093:4;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1419277	1421138	.	+	.	source_transcript=hg002_chrY_paternal_28.2;source_transcript_name=hg002_chrY_paternal_28.1;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_28.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.2,hg002_chrY_paternal_28.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000093;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000093;transcript_name=hg002_chrY_paternal_28.1;gene_name=AKAP17A;ID=exon:HG003_chrY_T0000093:5;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	1414325	1457366	.	+	.	source_gene_common_name=ASMT;source_gene=hg002_chrY_paternal_29;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;gene_id=HG003_chrY_G0000023;gene_biotype=protein_coding;gene_name=ASMT;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000023;Name=ASMT
HG003_chrY	CAT	transcript	1414325	1457366	100	+	.	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000094;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_G0000023;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=HG003_chrY_T0000094;Name=ASMT
HG003_chrY	CAT	exon	1414325	1414402	.	+	.	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000094;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000094;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:HG003_chrY_T0000094:0;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1414403	1433380	.	+	.	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000094;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000094;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=intron:HG003_chrY_T0000094:0;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1433381	1433516	.	+	.	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000094;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000094;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:HG003_chrY_T0000094:1;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1433448	1433516	.	+	0	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000094;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000094;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:HG003_chrY_T0000094:0;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1433448	1433450	.	+	0	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000094;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000094;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=start_codon:HG003_chrY_T0000094;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1433517	1441386	.	+	.	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000094;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000094;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=intron:HG003_chrY_T0000094:1;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1441387	1441561	.	+	.	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000094;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000094;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:HG003_chrY_T0000094:2;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1441387	1441561	.	+	0	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000094;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000094;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:HG003_chrY_T0000094:1;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1441562	1442516	.	+	.	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000094;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000094;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=intron:HG003_chrY_T0000094:2;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1442517	1442646	.	+	.	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000094;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000094;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:HG003_chrY_T0000094:3;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1442517	1442646	.	+	2	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000094;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000094;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:HG003_chrY_T0000094:2;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1442647	1445936	.	+	.	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000094;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000094;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=intron:HG003_chrY_T0000094:3;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1445937	1446005	.	+	.	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000094;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000094;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:HG003_chrY_T0000094:4;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1445937	1446005	.	+	1	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000094;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000094;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:HG003_chrY_T0000094:3;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1446006	1448055	.	+	.	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000094;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000094;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=intron:HG003_chrY_T0000094:4;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1448056	1448174	.	+	.	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000094;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000094;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:HG003_chrY_T0000094:5;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1448056	1448174	.	+	1	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000094;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000094;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:HG003_chrY_T0000094:4;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1448175	1450938	.	+	.	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000094;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000094;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=intron:HG003_chrY_T0000094:5;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1450939	1451022	.	+	.	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000094;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000094;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:HG003_chrY_T0000094:6;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1450939	1451022	.	+	2	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000094;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000094;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:HG003_chrY_T0000094:5;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1451023	1451384	.	+	.	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000094;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000094;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=intron:HG003_chrY_T0000094:6;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1451385	1451525	.	+	.	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000094;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000094;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:HG003_chrY_T0000094:7;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1451385	1451525	.	+	2	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000094;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000094;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:HG003_chrY_T0000094:6;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1451526	1454673	.	+	.	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000094;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000094;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=intron:HG003_chrY_T0000094:7;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1454674	1454796	.	+	.	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000094;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000094;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:HG003_chrY_T0000094:8;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1454674	1454796	.	+	2	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000094;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000094;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:HG003_chrY_T0000094:7;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1454797	1457087	.	+	.	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000094;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000094;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=intron:HG003_chrY_T0000094:8;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1457088	1457366	.	+	.	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000094;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000094;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:HG003_chrY_T0000094:9;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1457088	1457299	.	+	2	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000094;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000094;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:HG003_chrY_T0000094:8;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1457297	1457299	.	+	0	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000094;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000094;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=stop_codon:HG003_chrY_T0000094;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1433307	1457366	100	+	.	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000095;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_G0000023;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=HG003_chrY_T0000095;Name=ASMT
HG003_chrY	CAT	exon	1433307	1433516	.	+	.	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000095;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000095;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:HG003_chrY_T0000095:0;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1433448	1433516	.	+	0	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000095;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000095;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:HG003_chrY_T0000095:0;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1433448	1433450	.	+	0	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000095;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000095;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=start_codon:HG003_chrY_T0000095;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1433517	1441386	.	+	.	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000095;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000095;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=intron:HG003_chrY_T0000095:0;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1441387	1441561	.	+	.	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000095;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000095;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:HG003_chrY_T0000095:1;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1441387	1441561	.	+	0	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000095;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000095;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:HG003_chrY_T0000095:1;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1441562	1442516	.	+	.	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000095;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000095;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=intron:HG003_chrY_T0000095:1;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1442517	1442646	.	+	.	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000095;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000095;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:HG003_chrY_T0000095:2;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1442517	1442646	.	+	2	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000095;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000095;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:HG003_chrY_T0000095:2;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1442647	1445936	.	+	.	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000095;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000095;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=intron:HG003_chrY_T0000095:2;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1445937	1446005	.	+	.	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000095;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000095;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:HG003_chrY_T0000095:3;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1445937	1446005	.	+	1	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000095;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000095;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:HG003_chrY_T0000095:3;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1446006	1448055	.	+	.	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000095;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000095;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=intron:HG003_chrY_T0000095:3;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1448056	1448174	.	+	.	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000095;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000095;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:HG003_chrY_T0000095:4;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1448056	1448174	.	+	1	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000095;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000095;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:HG003_chrY_T0000095:4;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1448175	1450938	.	+	.	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000095;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000095;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=intron:HG003_chrY_T0000095:4;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1450939	1451022	.	+	.	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000095;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000095;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:HG003_chrY_T0000095:5;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1450939	1451022	.	+	2	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000095;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000095;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:HG003_chrY_T0000095:5;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1451023	1451384	.	+	.	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000095;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000095;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=intron:HG003_chrY_T0000095:5;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1451385	1451525	.	+	.	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000095;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000095;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:HG003_chrY_T0000095:6;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1451385	1451525	.	+	2	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000095;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000095;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:HG003_chrY_T0000095:6;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1451526	1454673	.	+	.	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000095;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000095;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=intron:HG003_chrY_T0000095:6;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1454674	1454796	.	+	.	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000095;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000095;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:HG003_chrY_T0000095:7;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1454674	1454796	.	+	2	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000095;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000095;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:HG003_chrY_T0000095:7;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1454797	1457087	.	+	.	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000095;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000095;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=intron:HG003_chrY_T0000095:7;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1457088	1457366	.	+	.	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000095;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000095;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:HG003_chrY_T0000095:8;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1457088	1457299	.	+	2	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000095;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000095;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:HG003_chrY_T0000095:8;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1457297	1457299	.	+	0	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000095;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000095;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=stop_codon:HG003_chrY_T0000095;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1433381	1457366	100	+	.	source_transcript=hg002_chrY_paternal_29.3;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.3,hg002_chrY_paternal_29.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000096;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_G0000023;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=HG003_chrY_T0000096;Name=ASMT
HG003_chrY	CAT	exon	1433381	1433516	.	+	.	source_transcript=hg002_chrY_paternal_29.3;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.3,hg002_chrY_paternal_29.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000096;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000096;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:HG003_chrY_T0000096:0;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1433448	1433516	.	+	0	source_transcript=hg002_chrY_paternal_29.3;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.3,hg002_chrY_paternal_29.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000096;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000096;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:HG003_chrY_T0000096:0;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1433448	1433450	.	+	0	source_transcript=hg002_chrY_paternal_29.3;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.3,hg002_chrY_paternal_29.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000096;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000096;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=start_codon:HG003_chrY_T0000096;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1433517	1441386	.	+	.	source_transcript=hg002_chrY_paternal_29.3;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.3,hg002_chrY_paternal_29.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000096;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000096;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=intron:HG003_chrY_T0000096:0;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1441387	1441561	.	+	.	source_transcript=hg002_chrY_paternal_29.3;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.3,hg002_chrY_paternal_29.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000096;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000096;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:HG003_chrY_T0000096:1;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1441387	1441561	.	+	0	source_transcript=hg002_chrY_paternal_29.3;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.3,hg002_chrY_paternal_29.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000096;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000096;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:HG003_chrY_T0000096:1;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1441562	1442516	.	+	.	source_transcript=hg002_chrY_paternal_29.3;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.3,hg002_chrY_paternal_29.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000096;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000096;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=intron:HG003_chrY_T0000096:1;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1442517	1442646	.	+	.	source_transcript=hg002_chrY_paternal_29.3;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.3,hg002_chrY_paternal_29.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000096;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000096;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:HG003_chrY_T0000096:2;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1442517	1442646	.	+	2	source_transcript=hg002_chrY_paternal_29.3;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.3,hg002_chrY_paternal_29.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000096;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000096;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:HG003_chrY_T0000096:2;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1442647	1445936	.	+	.	source_transcript=hg002_chrY_paternal_29.3;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.3,hg002_chrY_paternal_29.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000096;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000096;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=intron:HG003_chrY_T0000096:2;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1445937	1446005	.	+	.	source_transcript=hg002_chrY_paternal_29.3;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.3,hg002_chrY_paternal_29.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000096;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000096;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:HG003_chrY_T0000096:3;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1445937	1446005	.	+	1	source_transcript=hg002_chrY_paternal_29.3;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.3,hg002_chrY_paternal_29.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000096;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000096;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:HG003_chrY_T0000096:3;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1446006	1448055	.	+	.	source_transcript=hg002_chrY_paternal_29.3;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.3,hg002_chrY_paternal_29.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000096;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000096;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=intron:HG003_chrY_T0000096:3;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1448056	1448174	.	+	.	source_transcript=hg002_chrY_paternal_29.3;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.3,hg002_chrY_paternal_29.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000096;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000096;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:HG003_chrY_T0000096:4;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1448056	1448174	.	+	1	source_transcript=hg002_chrY_paternal_29.3;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.3,hg002_chrY_paternal_29.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000096;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000096;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:HG003_chrY_T0000096:4;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1448175	1454673	.	+	.	source_transcript=hg002_chrY_paternal_29.3;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.3,hg002_chrY_paternal_29.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000096;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000096;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=intron:HG003_chrY_T0000096:4;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1454674	1454796	.	+	.	source_transcript=hg002_chrY_paternal_29.3;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.3,hg002_chrY_paternal_29.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000096;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000096;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:HG003_chrY_T0000096:5;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1454674	1454796	.	+	2	source_transcript=hg002_chrY_paternal_29.3;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.3,hg002_chrY_paternal_29.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000096;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000096;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:HG003_chrY_T0000096:5;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1454797	1457087	.	+	.	source_transcript=hg002_chrY_paternal_29.3;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.3,hg002_chrY_paternal_29.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000096;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000096;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=intron:HG003_chrY_T0000096:5;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1457088	1457366	.	+	.	source_transcript=hg002_chrY_paternal_29.3;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.3,hg002_chrY_paternal_29.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000096;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000096;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:HG003_chrY_T0000096:6;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1457088	1457299	.	+	2	source_transcript=hg002_chrY_paternal_29.3;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.3,hg002_chrY_paternal_29.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000096;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000096;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:HG003_chrY_T0000096:6;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1457297	1457299	.	+	0	source_transcript=hg002_chrY_paternal_29.3;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.3,hg002_chrY_paternal_29.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000096;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000096;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=stop_codon:HG003_chrY_T0000096;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	1546580	1570495	.	+	.	source_gene_common_name=LINC02968;source_gene=hg002_chrY_paternal_30;alternative_source_transcripts=hg002_chrY_paternal_30.1,hg002_chrY_paternal_30.1;gene_id=HG003_chrY_G0000024;gene_biotype=lncRNA;gene_name=LINC02968;gene_sources=liftoff;ID=HG003_chrY_G0000024;Name=LINC02968
HG003_chrY	CAT	transcript	1546580	1570495	1000	+	.	source_transcript=hg002_chrY_paternal_30.1;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.1,hg002_chrY_paternal_30.1;transcript_id=HG003_chrY_T0000097;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_G0000024;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=HG003_chrY_T0000097;Name=LINC02968
HG003_chrY	CAT	exon	1546580	1546884	.	+	.	source_transcript=hg002_chrY_paternal_30.1;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.1,hg002_chrY_paternal_30.1;transcript_id=HG003_chrY_T0000097;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000097;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:HG003_chrY_T0000097:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1546885	1548114	.	+	.	source_transcript=hg002_chrY_paternal_30.1;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.1,hg002_chrY_paternal_30.1;transcript_id=HG003_chrY_T0000097;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000097;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:HG003_chrY_T0000097:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1548115	1548358	.	+	.	source_transcript=hg002_chrY_paternal_30.1;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.1,hg002_chrY_paternal_30.1;transcript_id=HG003_chrY_T0000097;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000097;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:HG003_chrY_T0000097:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1548359	1557991	.	+	.	source_transcript=hg002_chrY_paternal_30.1;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.1,hg002_chrY_paternal_30.1;transcript_id=HG003_chrY_T0000097;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000097;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:HG003_chrY_T0000097:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1557992	1558205	.	+	.	source_transcript=hg002_chrY_paternal_30.1;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.1,hg002_chrY_paternal_30.1;transcript_id=HG003_chrY_T0000097;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000097;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:HG003_chrY_T0000097:2;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1558206	1558298	.	+	.	source_transcript=hg002_chrY_paternal_30.1;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.1,hg002_chrY_paternal_30.1;transcript_id=HG003_chrY_T0000097;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000097;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:HG003_chrY_T0000097:2;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1558299	1559083	.	+	.	source_transcript=hg002_chrY_paternal_30.1;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.1,hg002_chrY_paternal_30.1;transcript_id=HG003_chrY_T0000097;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000097;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:HG003_chrY_T0000097:3;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1559084	1561800	.	+	.	source_transcript=hg002_chrY_paternal_30.1;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.1,hg002_chrY_paternal_30.1;transcript_id=HG003_chrY_T0000097;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000097;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:HG003_chrY_T0000097:3;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1561801	1562052	.	+	.	source_transcript=hg002_chrY_paternal_30.1;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.1,hg002_chrY_paternal_30.1;transcript_id=HG003_chrY_T0000097;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000097;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:HG003_chrY_T0000097:4;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1562053	1565795	.	+	.	source_transcript=hg002_chrY_paternal_30.1;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.1,hg002_chrY_paternal_30.1;transcript_id=HG003_chrY_T0000097;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000097;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:HG003_chrY_T0000097:4;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1565796	1565855	.	+	.	source_transcript=hg002_chrY_paternal_30.1;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.1,hg002_chrY_paternal_30.1;transcript_id=HG003_chrY_T0000097;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000097;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:HG003_chrY_T0000097:5;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1565856	1570194	.	+	.	source_transcript=hg002_chrY_paternal_30.1;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.1,hg002_chrY_paternal_30.1;transcript_id=HG003_chrY_T0000097;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000097;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:HG003_chrY_T0000097:5;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1570195	1570495	.	+	.	source_transcript=hg002_chrY_paternal_30.1;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.1,hg002_chrY_paternal_30.1;transcript_id=HG003_chrY_T0000097;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000097;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:HG003_chrY_T0000097:6;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1546634	1570495	1000	+	.	source_transcript=hg002_chrY_paternal_30.2;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.2,hg002_chrY_paternal_30.2;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_G0000024;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=HG003_chrY_T0000098;Name=LINC02968
HG003_chrY	CAT	exon	1546634	1546884	.	+	.	source_transcript=hg002_chrY_paternal_30.2;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.2,hg002_chrY_paternal_30.2;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000098;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:HG003_chrY_T0000098:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1546885	1548111	.	+	.	source_transcript=hg002_chrY_paternal_30.2;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.2,hg002_chrY_paternal_30.2;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000098;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:HG003_chrY_T0000098:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1548112	1548373	.	+	.	source_transcript=hg002_chrY_paternal_30.2;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.2,hg002_chrY_paternal_30.2;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000098;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:HG003_chrY_T0000098:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1548374	1556441	.	+	.	source_transcript=hg002_chrY_paternal_30.2;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.2,hg002_chrY_paternal_30.2;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000098;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:HG003_chrY_T0000098:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1556442	1556537	.	+	.	source_transcript=hg002_chrY_paternal_30.2;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.2,hg002_chrY_paternal_30.2;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000098;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:HG003_chrY_T0000098:2;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1556538	1557794	.	+	.	source_transcript=hg002_chrY_paternal_30.2;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.2,hg002_chrY_paternal_30.2;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000098;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:HG003_chrY_T0000098:2;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1557795	1558205	.	+	.	source_transcript=hg002_chrY_paternal_30.2;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.2,hg002_chrY_paternal_30.2;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000098;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:HG003_chrY_T0000098:3;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1558206	1558298	.	+	.	source_transcript=hg002_chrY_paternal_30.2;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.2,hg002_chrY_paternal_30.2;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000098;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:HG003_chrY_T0000098:3;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1558299	1559083	.	+	.	source_transcript=hg002_chrY_paternal_30.2;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.2,hg002_chrY_paternal_30.2;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000098;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:HG003_chrY_T0000098:4;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1559084	1561800	.	+	.	source_transcript=hg002_chrY_paternal_30.2;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.2,hg002_chrY_paternal_30.2;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000098;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:HG003_chrY_T0000098:4;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1561801	1562052	.	+	.	source_transcript=hg002_chrY_paternal_30.2;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.2,hg002_chrY_paternal_30.2;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000098;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:HG003_chrY_T0000098:5;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1562053	1565795	.	+	.	source_transcript=hg002_chrY_paternal_30.2;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.2,hg002_chrY_paternal_30.2;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000098;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:HG003_chrY_T0000098:5;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1565796	1565855	.	+	.	source_transcript=hg002_chrY_paternal_30.2;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.2,hg002_chrY_paternal_30.2;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000098;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:HG003_chrY_T0000098:6;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1565856	1570194	.	+	.	source_transcript=hg002_chrY_paternal_30.2;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.2,hg002_chrY_paternal_30.2;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000098;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:HG003_chrY_T0000098:6;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1570195	1570495	.	+	.	source_transcript=hg002_chrY_paternal_30.2;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.2,hg002_chrY_paternal_30.2;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000098;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:HG003_chrY_T0000098:7;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1546717	1570495	1000	+	.	source_transcript=hg002_chrY_paternal_30.3;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.3,hg002_chrY_paternal_30.3;transcript_id=HG003_chrY_T0000099;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_G0000024;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=HG003_chrY_T0000099;Name=LINC02968
HG003_chrY	CAT	exon	1546717	1546884	.	+	.	source_transcript=hg002_chrY_paternal_30.3;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.3,hg002_chrY_paternal_30.3;transcript_id=HG003_chrY_T0000099;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000099;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:HG003_chrY_T0000099:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1546885	1548111	.	+	.	source_transcript=hg002_chrY_paternal_30.3;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.3,hg002_chrY_paternal_30.3;transcript_id=HG003_chrY_T0000099;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000099;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:HG003_chrY_T0000099:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1548112	1548358	.	+	.	source_transcript=hg002_chrY_paternal_30.3;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.3,hg002_chrY_paternal_30.3;transcript_id=HG003_chrY_T0000099;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000099;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:HG003_chrY_T0000099:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1548359	1556441	.	+	.	source_transcript=hg002_chrY_paternal_30.3;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.3,hg002_chrY_paternal_30.3;transcript_id=HG003_chrY_T0000099;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000099;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:HG003_chrY_T0000099:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1556442	1556537	.	+	.	source_transcript=hg002_chrY_paternal_30.3;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.3,hg002_chrY_paternal_30.3;transcript_id=HG003_chrY_T0000099;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000099;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:HG003_chrY_T0000099:2;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1556538	1557991	.	+	.	source_transcript=hg002_chrY_paternal_30.3;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.3,hg002_chrY_paternal_30.3;transcript_id=HG003_chrY_T0000099;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000099;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:HG003_chrY_T0000099:2;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1557992	1558205	.	+	.	source_transcript=hg002_chrY_paternal_30.3;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.3,hg002_chrY_paternal_30.3;transcript_id=HG003_chrY_T0000099;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000099;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:HG003_chrY_T0000099:3;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1558206	1558298	.	+	.	source_transcript=hg002_chrY_paternal_30.3;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.3,hg002_chrY_paternal_30.3;transcript_id=HG003_chrY_T0000099;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000099;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:HG003_chrY_T0000099:3;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1558299	1559083	.	+	.	source_transcript=hg002_chrY_paternal_30.3;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.3,hg002_chrY_paternal_30.3;transcript_id=HG003_chrY_T0000099;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000099;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:HG003_chrY_T0000099:4;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1559084	1561800	.	+	.	source_transcript=hg002_chrY_paternal_30.3;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.3,hg002_chrY_paternal_30.3;transcript_id=HG003_chrY_T0000099;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000099;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:HG003_chrY_T0000099:4;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1561801	1562052	.	+	.	source_transcript=hg002_chrY_paternal_30.3;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.3,hg002_chrY_paternal_30.3;transcript_id=HG003_chrY_T0000099;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000099;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:HG003_chrY_T0000099:5;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1562053	1565795	.	+	.	source_transcript=hg002_chrY_paternal_30.3;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.3,hg002_chrY_paternal_30.3;transcript_id=HG003_chrY_T0000099;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000099;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:HG003_chrY_T0000099:5;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1565796	1565855	.	+	.	source_transcript=hg002_chrY_paternal_30.3;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.3,hg002_chrY_paternal_30.3;transcript_id=HG003_chrY_T0000099;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000099;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:HG003_chrY_T0000099:6;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1565856	1570194	.	+	.	source_transcript=hg002_chrY_paternal_30.3;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.3,hg002_chrY_paternal_30.3;transcript_id=HG003_chrY_T0000099;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000099;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:HG003_chrY_T0000099:6;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1570195	1570495	.	+	.	source_transcript=hg002_chrY_paternal_30.3;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.3,hg002_chrY_paternal_30.3;transcript_id=HG003_chrY_T0000099;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000099;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:HG003_chrY_T0000099:7;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1546717	1570495	1000	+	.	source_transcript=hg002_chrY_paternal_30.4;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.4,hg002_chrY_paternal_30.4;transcript_id=HG003_chrY_T0000100;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_G0000024;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=HG003_chrY_T0000100;Name=LINC02968
HG003_chrY	CAT	exon	1546717	1546884	.	+	.	source_transcript=hg002_chrY_paternal_30.4;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.4,hg002_chrY_paternal_30.4;transcript_id=HG003_chrY_T0000100;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000100;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:HG003_chrY_T0000100:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1546885	1548111	.	+	.	source_transcript=hg002_chrY_paternal_30.4;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.4,hg002_chrY_paternal_30.4;transcript_id=HG003_chrY_T0000100;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000100;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:HG003_chrY_T0000100:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1548112	1548358	.	+	.	source_transcript=hg002_chrY_paternal_30.4;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.4,hg002_chrY_paternal_30.4;transcript_id=HG003_chrY_T0000100;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000100;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:HG003_chrY_T0000100:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1548359	1556441	.	+	.	source_transcript=hg002_chrY_paternal_30.4;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.4,hg002_chrY_paternal_30.4;transcript_id=HG003_chrY_T0000100;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000100;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:HG003_chrY_T0000100:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1556442	1556537	.	+	.	source_transcript=hg002_chrY_paternal_30.4;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.4,hg002_chrY_paternal_30.4;transcript_id=HG003_chrY_T0000100;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000100;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:HG003_chrY_T0000100:2;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1556538	1557988	.	+	.	source_transcript=hg002_chrY_paternal_30.4;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.4,hg002_chrY_paternal_30.4;transcript_id=HG003_chrY_T0000100;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000100;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:HG003_chrY_T0000100:2;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1557989	1558205	.	+	.	source_transcript=hg002_chrY_paternal_30.4;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.4,hg002_chrY_paternal_30.4;transcript_id=HG003_chrY_T0000100;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000100;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:HG003_chrY_T0000100:3;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1558206	1558298	.	+	.	source_transcript=hg002_chrY_paternal_30.4;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.4,hg002_chrY_paternal_30.4;transcript_id=HG003_chrY_T0000100;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000100;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:HG003_chrY_T0000100:3;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1558299	1559083	.	+	.	source_transcript=hg002_chrY_paternal_30.4;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.4,hg002_chrY_paternal_30.4;transcript_id=HG003_chrY_T0000100;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000100;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:HG003_chrY_T0000100:4;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1559084	1561800	.	+	.	source_transcript=hg002_chrY_paternal_30.4;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.4,hg002_chrY_paternal_30.4;transcript_id=HG003_chrY_T0000100;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000100;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:HG003_chrY_T0000100:4;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1561801	1562052	.	+	.	source_transcript=hg002_chrY_paternal_30.4;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.4,hg002_chrY_paternal_30.4;transcript_id=HG003_chrY_T0000100;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000100;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:HG003_chrY_T0000100:5;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1562053	1565795	.	+	.	source_transcript=hg002_chrY_paternal_30.4;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.4,hg002_chrY_paternal_30.4;transcript_id=HG003_chrY_T0000100;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000100;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:HG003_chrY_T0000100:5;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1565796	1565855	.	+	.	source_transcript=hg002_chrY_paternal_30.4;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.4,hg002_chrY_paternal_30.4;transcript_id=HG003_chrY_T0000100;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000100;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:HG003_chrY_T0000100:6;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1565856	1570194	.	+	.	source_transcript=hg002_chrY_paternal_30.4;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.4,hg002_chrY_paternal_30.4;transcript_id=HG003_chrY_T0000100;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000100;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:HG003_chrY_T0000100:6;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1570195	1570495	.	+	.	source_transcript=hg002_chrY_paternal_30.4;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.4,hg002_chrY_paternal_30.4;transcript_id=HG003_chrY_T0000100;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000100;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:HG003_chrY_T0000100:7;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1546717	1570495	1000	+	.	source_transcript=hg002_chrY_paternal_30.5;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.5,hg002_chrY_paternal_30.5;transcript_id=HG003_chrY_T0000101;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_G0000024;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=HG003_chrY_T0000101;Name=LINC02968
HG003_chrY	CAT	exon	1546717	1546884	.	+	.	source_transcript=hg002_chrY_paternal_30.5;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.5,hg002_chrY_paternal_30.5;transcript_id=HG003_chrY_T0000101;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000101;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:HG003_chrY_T0000101:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1546885	1548114	.	+	.	source_transcript=hg002_chrY_paternal_30.5;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.5,hg002_chrY_paternal_30.5;transcript_id=HG003_chrY_T0000101;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000101;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:HG003_chrY_T0000101:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1548115	1548358	.	+	.	source_transcript=hg002_chrY_paternal_30.5;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.5,hg002_chrY_paternal_30.5;transcript_id=HG003_chrY_T0000101;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000101;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:HG003_chrY_T0000101:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1548359	1556441	.	+	.	source_transcript=hg002_chrY_paternal_30.5;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.5,hg002_chrY_paternal_30.5;transcript_id=HG003_chrY_T0000101;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000101;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:HG003_chrY_T0000101:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1556442	1556537	.	+	.	source_transcript=hg002_chrY_paternal_30.5;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.5,hg002_chrY_paternal_30.5;transcript_id=HG003_chrY_T0000101;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000101;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:HG003_chrY_T0000101:2;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1556538	1557991	.	+	.	source_transcript=hg002_chrY_paternal_30.5;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.5,hg002_chrY_paternal_30.5;transcript_id=HG003_chrY_T0000101;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000101;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:HG003_chrY_T0000101:2;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1557992	1558205	.	+	.	source_transcript=hg002_chrY_paternal_30.5;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.5,hg002_chrY_paternal_30.5;transcript_id=HG003_chrY_T0000101;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000101;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:HG003_chrY_T0000101:3;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1558206	1558298	.	+	.	source_transcript=hg002_chrY_paternal_30.5;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.5,hg002_chrY_paternal_30.5;transcript_id=HG003_chrY_T0000101;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000101;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:HG003_chrY_T0000101:3;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1558299	1559083	.	+	.	source_transcript=hg002_chrY_paternal_30.5;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.5,hg002_chrY_paternal_30.5;transcript_id=HG003_chrY_T0000101;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000101;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:HG003_chrY_T0000101:4;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1559084	1561800	.	+	.	source_transcript=hg002_chrY_paternal_30.5;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.5,hg002_chrY_paternal_30.5;transcript_id=HG003_chrY_T0000101;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000101;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:HG003_chrY_T0000101:4;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1561801	1562052	.	+	.	source_transcript=hg002_chrY_paternal_30.5;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.5,hg002_chrY_paternal_30.5;transcript_id=HG003_chrY_T0000101;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000101;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:HG003_chrY_T0000101:5;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1562053	1565795	.	+	.	source_transcript=hg002_chrY_paternal_30.5;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.5,hg002_chrY_paternal_30.5;transcript_id=HG003_chrY_T0000101;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000101;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:HG003_chrY_T0000101:5;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1565796	1565855	.	+	.	source_transcript=hg002_chrY_paternal_30.5;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.5,hg002_chrY_paternal_30.5;transcript_id=HG003_chrY_T0000101;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000101;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:HG003_chrY_T0000101:6;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1565856	1570194	.	+	.	source_transcript=hg002_chrY_paternal_30.5;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.5,hg002_chrY_paternal_30.5;transcript_id=HG003_chrY_T0000101;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000101;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:HG003_chrY_T0000101:6;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1570195	1570495	.	+	.	source_transcript=hg002_chrY_paternal_30.5;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.5,hg002_chrY_paternal_30.5;transcript_id=HG003_chrY_T0000101;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000101;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:HG003_chrY_T0000101:7;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1546717	1570495	1000	+	.	source_transcript=hg002_chrY_paternal_30.6;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.6;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.6,hg002_chrY_paternal_30.6;transcript_id=HG003_chrY_T0000102;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_G0000024;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=HG003_chrY_T0000102;Name=LINC02968
HG003_chrY	CAT	exon	1546717	1546884	.	+	.	source_transcript=hg002_chrY_paternal_30.6;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.6,hg002_chrY_paternal_30.6;transcript_id=HG003_chrY_T0000102;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000102;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:HG003_chrY_T0000102:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1546885	1548111	.	+	.	source_transcript=hg002_chrY_paternal_30.6;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.6,hg002_chrY_paternal_30.6;transcript_id=HG003_chrY_T0000102;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000102;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:HG003_chrY_T0000102:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1548112	1548358	.	+	.	source_transcript=hg002_chrY_paternal_30.6;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.6,hg002_chrY_paternal_30.6;transcript_id=HG003_chrY_T0000102;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000102;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:HG003_chrY_T0000102:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1548359	1556441	.	+	.	source_transcript=hg002_chrY_paternal_30.6;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.6,hg002_chrY_paternal_30.6;transcript_id=HG003_chrY_T0000102;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000102;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:HG003_chrY_T0000102:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1556442	1556537	.	+	.	source_transcript=hg002_chrY_paternal_30.6;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.6,hg002_chrY_paternal_30.6;transcript_id=HG003_chrY_T0000102;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000102;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:HG003_chrY_T0000102:2;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1556538	1558099	.	+	.	source_transcript=hg002_chrY_paternal_30.6;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.6,hg002_chrY_paternal_30.6;transcript_id=HG003_chrY_T0000102;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000102;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:HG003_chrY_T0000102:2;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1558100	1558205	.	+	.	source_transcript=hg002_chrY_paternal_30.6;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.6,hg002_chrY_paternal_30.6;transcript_id=HG003_chrY_T0000102;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000102;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:HG003_chrY_T0000102:3;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1558206	1558298	.	+	.	source_transcript=hg002_chrY_paternal_30.6;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.6,hg002_chrY_paternal_30.6;transcript_id=HG003_chrY_T0000102;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000102;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:HG003_chrY_T0000102:3;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1558299	1559083	.	+	.	source_transcript=hg002_chrY_paternal_30.6;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.6,hg002_chrY_paternal_30.6;transcript_id=HG003_chrY_T0000102;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000102;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:HG003_chrY_T0000102:4;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1559084	1561800	.	+	.	source_transcript=hg002_chrY_paternal_30.6;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.6,hg002_chrY_paternal_30.6;transcript_id=HG003_chrY_T0000102;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000102;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:HG003_chrY_T0000102:4;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1561801	1562052	.	+	.	source_transcript=hg002_chrY_paternal_30.6;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.6,hg002_chrY_paternal_30.6;transcript_id=HG003_chrY_T0000102;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000102;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:HG003_chrY_T0000102:5;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1562053	1565795	.	+	.	source_transcript=hg002_chrY_paternal_30.6;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.6,hg002_chrY_paternal_30.6;transcript_id=HG003_chrY_T0000102;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000102;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:HG003_chrY_T0000102:5;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1565796	1565855	.	+	.	source_transcript=hg002_chrY_paternal_30.6;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.6,hg002_chrY_paternal_30.6;transcript_id=HG003_chrY_T0000102;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000102;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:HG003_chrY_T0000102:6;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1565856	1570194	.	+	.	source_transcript=hg002_chrY_paternal_30.6;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.6,hg002_chrY_paternal_30.6;transcript_id=HG003_chrY_T0000102;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000102;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:HG003_chrY_T0000102:6;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1570195	1570495	.	+	.	source_transcript=hg002_chrY_paternal_30.6;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.6,hg002_chrY_paternal_30.6;transcript_id=HG003_chrY_T0000102;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000102;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:HG003_chrY_T0000102:7;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	1584692	1597984	.	+	.	source_gene_common_name=LOC105379413;source_gene=hg002_chrY_paternal_31;alternative_source_transcripts=hg002_chrY_paternal_31.1,hg002_chrY_paternal_31.1;gene_id=HG003_chrY_G0000025;gene_biotype=lncRNA;gene_name=LOC105379413;gene_sources=liftoff;ID=HG003_chrY_G0000025;Name=LOC105379413
HG003_chrY	CAT	transcript	1584692	1597984	1000	+	.	source_transcript=hg002_chrY_paternal_31.1;source_transcript_name=hg002_chrY_paternal_31.1;source_gene=hg002_chrY_paternal_31;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_31;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_31.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_31.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379413;alternative_source_transcripts=hg002_chrY_paternal_31.1,hg002_chrY_paternal_31.1;transcript_id=HG003_chrY_T0000103;gene_id=HG003_chrY_G0000025;Parent=HG003_chrY_G0000025;transcript_name=hg002_chrY_paternal_31.1;gene_name=LOC105379413;ID=HG003_chrY_T0000103;Name=LOC105379413
HG003_chrY	CAT	exon	1584692	1585268	.	+	.	source_transcript=hg002_chrY_paternal_31.1;source_transcript_name=hg002_chrY_paternal_31.1;source_gene=hg002_chrY_paternal_31;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_31;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_31.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_31.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379413;alternative_source_transcripts=hg002_chrY_paternal_31.1,hg002_chrY_paternal_31.1;transcript_id=HG003_chrY_T0000103;gene_id=HG003_chrY_G0000025;Parent=HG003_chrY_T0000103;transcript_name=hg002_chrY_paternal_31.1;gene_name=LOC105379413;ID=exon:HG003_chrY_T0000103:0;Name=LOC105379413;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1585269	1589711	.	+	.	source_transcript=hg002_chrY_paternal_31.1;source_transcript_name=hg002_chrY_paternal_31.1;source_gene=hg002_chrY_paternal_31;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_31;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_31.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_31.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379413;alternative_source_transcripts=hg002_chrY_paternal_31.1,hg002_chrY_paternal_31.1;transcript_id=HG003_chrY_T0000103;gene_id=HG003_chrY_G0000025;Parent=HG003_chrY_T0000103;transcript_name=hg002_chrY_paternal_31.1;gene_name=LOC105379413;ID=intron:HG003_chrY_T0000103:0;Name=LOC105379413;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1589712	1589925	.	+	.	source_transcript=hg002_chrY_paternal_31.1;source_transcript_name=hg002_chrY_paternal_31.1;source_gene=hg002_chrY_paternal_31;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_31;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_31.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_31.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379413;alternative_source_transcripts=hg002_chrY_paternal_31.1,hg002_chrY_paternal_31.1;transcript_id=HG003_chrY_T0000103;gene_id=HG003_chrY_G0000025;Parent=HG003_chrY_T0000103;transcript_name=hg002_chrY_paternal_31.1;gene_name=LOC105379413;ID=exon:HG003_chrY_T0000103:1;Name=LOC105379413;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1589926	1594854	.	+	.	source_transcript=hg002_chrY_paternal_31.1;source_transcript_name=hg002_chrY_paternal_31.1;source_gene=hg002_chrY_paternal_31;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_31;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_31.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_31.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379413;alternative_source_transcripts=hg002_chrY_paternal_31.1,hg002_chrY_paternal_31.1;transcript_id=HG003_chrY_T0000103;gene_id=HG003_chrY_G0000025;Parent=HG003_chrY_T0000103;transcript_name=hg002_chrY_paternal_31.1;gene_name=LOC105379413;ID=intron:HG003_chrY_T0000103:1;Name=LOC105379413;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1594855	1597984	.	+	.	source_transcript=hg002_chrY_paternal_31.1;source_transcript_name=hg002_chrY_paternal_31.1;source_gene=hg002_chrY_paternal_31;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_31;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_31.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_31.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379413;alternative_source_transcripts=hg002_chrY_paternal_31.1,hg002_chrY_paternal_31.1;transcript_id=HG003_chrY_T0000103;gene_id=HG003_chrY_G0000025;Parent=HG003_chrY_T0000103;transcript_name=hg002_chrY_paternal_31.1;gene_name=LOC105379413;ID=exon:HG003_chrY_T0000103:2;Name=LOC105379413;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1584692	1597984	1000	+	.	source_transcript=hg002_chrY_paternal_31.2;source_transcript_name=hg002_chrY_paternal_31.1;source_gene=hg002_chrY_paternal_31;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_31;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_31.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_31.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379413;alternative_source_transcripts=hg002_chrY_paternal_31.2,hg002_chrY_paternal_31.2;transcript_id=HG003_chrY_T0000104;gene_id=HG003_chrY_G0000025;Parent=HG003_chrY_G0000025;transcript_name=hg002_chrY_paternal_31.1;gene_name=LOC105379413;ID=HG003_chrY_T0000104;Name=LOC105379413
HG003_chrY	CAT	exon	1584692	1585268	.	+	.	source_transcript=hg002_chrY_paternal_31.2;source_transcript_name=hg002_chrY_paternal_31.1;source_gene=hg002_chrY_paternal_31;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_31;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_31.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_31.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379413;alternative_source_transcripts=hg002_chrY_paternal_31.2,hg002_chrY_paternal_31.2;transcript_id=HG003_chrY_T0000104;gene_id=HG003_chrY_G0000025;Parent=HG003_chrY_T0000104;transcript_name=hg002_chrY_paternal_31.1;gene_name=LOC105379413;ID=exon:HG003_chrY_T0000104:0;Name=LOC105379413;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1585269	1589711	.	+	.	source_transcript=hg002_chrY_paternal_31.2;source_transcript_name=hg002_chrY_paternal_31.1;source_gene=hg002_chrY_paternal_31;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_31;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_31.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_31.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379413;alternative_source_transcripts=hg002_chrY_paternal_31.2,hg002_chrY_paternal_31.2;transcript_id=HG003_chrY_T0000104;gene_id=HG003_chrY_G0000025;Parent=HG003_chrY_T0000104;transcript_name=hg002_chrY_paternal_31.1;gene_name=LOC105379413;ID=intron:HG003_chrY_T0000104:0;Name=LOC105379413;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1589712	1589874	.	+	.	source_transcript=hg002_chrY_paternal_31.2;source_transcript_name=hg002_chrY_paternal_31.1;source_gene=hg002_chrY_paternal_31;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_31;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_31.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_31.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379413;alternative_source_transcripts=hg002_chrY_paternal_31.2,hg002_chrY_paternal_31.2;transcript_id=HG003_chrY_T0000104;gene_id=HG003_chrY_G0000025;Parent=HG003_chrY_T0000104;transcript_name=hg002_chrY_paternal_31.1;gene_name=LOC105379413;ID=exon:HG003_chrY_T0000104:1;Name=LOC105379413;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1589875	1594854	.	+	.	source_transcript=hg002_chrY_paternal_31.2;source_transcript_name=hg002_chrY_paternal_31.1;source_gene=hg002_chrY_paternal_31;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_31;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_31.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_31.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379413;alternative_source_transcripts=hg002_chrY_paternal_31.2,hg002_chrY_paternal_31.2;transcript_id=HG003_chrY_T0000104;gene_id=HG003_chrY_G0000025;Parent=HG003_chrY_T0000104;transcript_name=hg002_chrY_paternal_31.1;gene_name=LOC105379413;ID=intron:HG003_chrY_T0000104:1;Name=LOC105379413;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1594855	1597984	.	+	.	source_transcript=hg002_chrY_paternal_31.2;source_transcript_name=hg002_chrY_paternal_31.1;source_gene=hg002_chrY_paternal_31;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_31;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_31.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_31.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379413;alternative_source_transcripts=hg002_chrY_paternal_31.2,hg002_chrY_paternal_31.2;transcript_id=HG003_chrY_T0000104;gene_id=HG003_chrY_G0000025;Parent=HG003_chrY_T0000104;transcript_name=hg002_chrY_paternal_31.1;gene_name=LOC105379413;ID=exon:HG003_chrY_T0000104:2;Name=LOC105379413;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	1692890	1699189	.	-	.	source_gene_common_name=LOC107985677;source_gene=hg002_chrY_paternal_32;alternative_source_transcripts=hg002_chrY_paternal_32.1,hg002_chrY_paternal_32.1;gene_id=HG003_chrY_G0000026;gene_biotype=lncRNA;gene_name=LOC107985677;gene_sources=liftoff;ID=HG003_chrY_G0000026;Name=LOC107985677
HG003_chrY	CAT	transcript	1692890	1699189	1000	-	.	source_transcript=hg002_chrY_paternal_32.1;source_transcript_name=hg002_chrY_paternal_32.1;source_gene=hg002_chrY_paternal_32;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_32;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_32.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_32.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107985677;alternative_source_transcripts=hg002_chrY_paternal_32.1,hg002_chrY_paternal_32.1;transcript_id=HG003_chrY_T0000105;gene_id=HG003_chrY_G0000026;Parent=HG003_chrY_G0000026;transcript_name=hg002_chrY_paternal_32.1;gene_name=LOC107985677;ID=HG003_chrY_T0000105;Name=LOC107985677
HG003_chrY	CAT	exon	1692890	1693943	.	-	.	source_transcript=hg002_chrY_paternal_32.1;source_transcript_name=hg002_chrY_paternal_32.1;source_gene=hg002_chrY_paternal_32;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_32;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_32.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_32.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107985677;alternative_source_transcripts=hg002_chrY_paternal_32.1,hg002_chrY_paternal_32.1;transcript_id=HG003_chrY_T0000105;gene_id=HG003_chrY_G0000026;Parent=HG003_chrY_T0000105;transcript_name=hg002_chrY_paternal_32.1;gene_name=LOC107985677;ID=exon:HG003_chrY_T0000105:0;Name=LOC107985677;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1693944	1695097	.	-	.	source_transcript=hg002_chrY_paternal_32.1;source_transcript_name=hg002_chrY_paternal_32.1;source_gene=hg002_chrY_paternal_32;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_32;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_32.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_32.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107985677;alternative_source_transcripts=hg002_chrY_paternal_32.1,hg002_chrY_paternal_32.1;transcript_id=HG003_chrY_T0000105;gene_id=HG003_chrY_G0000026;Parent=HG003_chrY_T0000105;transcript_name=hg002_chrY_paternal_32.1;gene_name=LOC107985677;ID=intron:HG003_chrY_T0000105:0;Name=LOC107985677;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1695098	1695211	.	-	.	source_transcript=hg002_chrY_paternal_32.1;source_transcript_name=hg002_chrY_paternal_32.1;source_gene=hg002_chrY_paternal_32;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_32;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_32.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_32.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107985677;alternative_source_transcripts=hg002_chrY_paternal_32.1,hg002_chrY_paternal_32.1;transcript_id=HG003_chrY_T0000105;gene_id=HG003_chrY_G0000026;Parent=HG003_chrY_T0000105;transcript_name=hg002_chrY_paternal_32.1;gene_name=LOC107985677;ID=exon:HG003_chrY_T0000105:1;Name=LOC107985677;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1695212	1695700	.	-	.	source_transcript=hg002_chrY_paternal_32.1;source_transcript_name=hg002_chrY_paternal_32.1;source_gene=hg002_chrY_paternal_32;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_32;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_32.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_32.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107985677;alternative_source_transcripts=hg002_chrY_paternal_32.1,hg002_chrY_paternal_32.1;transcript_id=HG003_chrY_T0000105;gene_id=HG003_chrY_G0000026;Parent=HG003_chrY_T0000105;transcript_name=hg002_chrY_paternal_32.1;gene_name=LOC107985677;ID=intron:HG003_chrY_T0000105:1;Name=LOC107985677;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1695701	1695827	.	-	.	source_transcript=hg002_chrY_paternal_32.1;source_transcript_name=hg002_chrY_paternal_32.1;source_gene=hg002_chrY_paternal_32;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_32;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_32.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_32.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107985677;alternative_source_transcripts=hg002_chrY_paternal_32.1,hg002_chrY_paternal_32.1;transcript_id=HG003_chrY_T0000105;gene_id=HG003_chrY_G0000026;Parent=HG003_chrY_T0000105;transcript_name=hg002_chrY_paternal_32.1;gene_name=LOC107985677;ID=exon:HG003_chrY_T0000105:2;Name=LOC107985677;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1695828	1697158	.	-	.	source_transcript=hg002_chrY_paternal_32.1;source_transcript_name=hg002_chrY_paternal_32.1;source_gene=hg002_chrY_paternal_32;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_32;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_32.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_32.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107985677;alternative_source_transcripts=hg002_chrY_paternal_32.1,hg002_chrY_paternal_32.1;transcript_id=HG003_chrY_T0000105;gene_id=HG003_chrY_G0000026;Parent=HG003_chrY_T0000105;transcript_name=hg002_chrY_paternal_32.1;gene_name=LOC107985677;ID=intron:HG003_chrY_T0000105:2;Name=LOC107985677;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1697159	1697474	.	-	.	source_transcript=hg002_chrY_paternal_32.1;source_transcript_name=hg002_chrY_paternal_32.1;source_gene=hg002_chrY_paternal_32;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_32;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_32.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_32.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107985677;alternative_source_transcripts=hg002_chrY_paternal_32.1,hg002_chrY_paternal_32.1;transcript_id=HG003_chrY_T0000105;gene_id=HG003_chrY_G0000026;Parent=HG003_chrY_T0000105;transcript_name=hg002_chrY_paternal_32.1;gene_name=LOC107985677;ID=exon:HG003_chrY_T0000105:3;Name=LOC107985677;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1697475	1697874	.	-	.	source_transcript=hg002_chrY_paternal_32.1;source_transcript_name=hg002_chrY_paternal_32.1;source_gene=hg002_chrY_paternal_32;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_32;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_32.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_32.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107985677;alternative_source_transcripts=hg002_chrY_paternal_32.1,hg002_chrY_paternal_32.1;transcript_id=HG003_chrY_T0000105;gene_id=HG003_chrY_G0000026;Parent=HG003_chrY_T0000105;transcript_name=hg002_chrY_paternal_32.1;gene_name=LOC107985677;ID=intron:HG003_chrY_T0000105:3;Name=LOC107985677;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1697875	1698474	.	-	.	source_transcript=hg002_chrY_paternal_32.1;source_transcript_name=hg002_chrY_paternal_32.1;source_gene=hg002_chrY_paternal_32;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_32;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_32.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_32.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107985677;alternative_source_transcripts=hg002_chrY_paternal_32.1,hg002_chrY_paternal_32.1;transcript_id=HG003_chrY_T0000105;gene_id=HG003_chrY_G0000026;Parent=HG003_chrY_T0000105;transcript_name=hg002_chrY_paternal_32.1;gene_name=LOC107985677;ID=exon:HG003_chrY_T0000105:4;Name=LOC107985677;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1698475	1698850	.	-	.	source_transcript=hg002_chrY_paternal_32.1;source_transcript_name=hg002_chrY_paternal_32.1;source_gene=hg002_chrY_paternal_32;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_32;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_32.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_32.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107985677;alternative_source_transcripts=hg002_chrY_paternal_32.1,hg002_chrY_paternal_32.1;transcript_id=HG003_chrY_T0000105;gene_id=HG003_chrY_G0000026;Parent=HG003_chrY_T0000105;transcript_name=hg002_chrY_paternal_32.1;gene_name=LOC107985677;ID=intron:HG003_chrY_T0000105:4;Name=LOC107985677;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1698851	1699189	.	-	.	source_transcript=hg002_chrY_paternal_32.1;source_transcript_name=hg002_chrY_paternal_32.1;source_gene=hg002_chrY_paternal_32;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_32;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_32.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_32.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107985677;alternative_source_transcripts=hg002_chrY_paternal_32.1,hg002_chrY_paternal_32.1;transcript_id=HG003_chrY_T0000105;gene_id=HG003_chrY_G0000026;Parent=HG003_chrY_T0000105;transcript_name=hg002_chrY_paternal_32.1;gene_name=LOC107985677;ID=exon:HG003_chrY_T0000105:5;Name=LOC107985677;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	1848617	2132167	.	-	.	source_gene_common_name=DHRSX;source_gene=hg002_chrY_paternal_33;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;gene_id=HG003_chrY_G0000027;gene_biotype=protein_coding;gene_name=DHRSX;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000027;Name=DHRSX
HG003_chrY	CAT	transcript	1848617	2132167	100	-	.	source_transcript=hg002_chrY_paternal_33.1;source_transcript_name=hg002_chrY_paternal_33.1;source_gene=hg002_chrY_paternal_33;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_33;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_33.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_33.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000106;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_G0000027;transcript_name=hg002_chrY_paternal_33.1;gene_name=DHRSX;ID=HG003_chrY_T0000106;Name=DHRSX
HG003_chrY	CAT	exon	1848617	1850340	.	-	.	source_transcript=hg002_chrY_paternal_33.1;source_transcript_name=hg002_chrY_paternal_33.1;source_gene=hg002_chrY_paternal_33;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_33;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_33.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_33.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000106;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000106;transcript_name=hg002_chrY_paternal_33.1;gene_name=DHRSX;ID=exon:HG003_chrY_T0000106:0;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1850152	1850340	.	-	0	source_transcript=hg002_chrY_paternal_33.1;source_transcript_name=hg002_chrY_paternal_33.1;source_gene=hg002_chrY_paternal_33;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_33;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_33.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_33.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000106;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000106;transcript_name=hg002_chrY_paternal_33.1;gene_name=DHRSX;ID=CDS:HG003_chrY_T0000106:0;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1850152	1850154	.	-	0	source_transcript=hg002_chrY_paternal_33.1;source_transcript_name=hg002_chrY_paternal_33.1;source_gene=hg002_chrY_paternal_33;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_33;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_33.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_33.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000106;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000106;transcript_name=hg002_chrY_paternal_33.1;gene_name=DHRSX;ID=stop_codon:HG003_chrY_T0000106;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1850341	1872882	.	-	.	source_transcript=hg002_chrY_paternal_33.1;source_transcript_name=hg002_chrY_paternal_33.1;source_gene=hg002_chrY_paternal_33;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_33;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_33.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_33.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000106;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000106;transcript_name=hg002_chrY_paternal_33.1;gene_name=DHRSX;ID=intron:HG003_chrY_T0000106:0;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1872883	1873090	.	-	.	source_transcript=hg002_chrY_paternal_33.1;source_transcript_name=hg002_chrY_paternal_33.1;source_gene=hg002_chrY_paternal_33;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_33;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_33.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_33.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000106;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000106;transcript_name=hg002_chrY_paternal_33.1;gene_name=DHRSX;ID=exon:HG003_chrY_T0000106:1;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1872883	1873090	.	-	1	source_transcript=hg002_chrY_paternal_33.1;source_transcript_name=hg002_chrY_paternal_33.1;source_gene=hg002_chrY_paternal_33;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_33;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_33.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_33.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000106;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000106;transcript_name=hg002_chrY_paternal_33.1;gene_name=DHRSX;ID=CDS:HG003_chrY_T0000106:1;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1873091	1896615	.	-	.	source_transcript=hg002_chrY_paternal_33.1;source_transcript_name=hg002_chrY_paternal_33.1;source_gene=hg002_chrY_paternal_33;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_33;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_33.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_33.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000106;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000106;transcript_name=hg002_chrY_paternal_33.1;gene_name=DHRSX;ID=intron:HG003_chrY_T0000106:1;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1896616	1896823	.	-	.	source_transcript=hg002_chrY_paternal_33.1;source_transcript_name=hg002_chrY_paternal_33.1;source_gene=hg002_chrY_paternal_33;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_33;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_33.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_33.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000106;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000106;transcript_name=hg002_chrY_paternal_33.1;gene_name=DHRSX;ID=exon:HG003_chrY_T0000106:2;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1896616	1896823	.	-	2	source_transcript=hg002_chrY_paternal_33.1;source_transcript_name=hg002_chrY_paternal_33.1;source_gene=hg002_chrY_paternal_33;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_33;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_33.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_33.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000106;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000106;transcript_name=hg002_chrY_paternal_33.1;gene_name=DHRSX;ID=CDS:HG003_chrY_T0000106:2;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1896824	1917265	.	-	.	source_transcript=hg002_chrY_paternal_33.1;source_transcript_name=hg002_chrY_paternal_33.1;source_gene=hg002_chrY_paternal_33;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_33;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_33.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_33.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000106;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000106;transcript_name=hg002_chrY_paternal_33.1;gene_name=DHRSX;ID=intron:HG003_chrY_T0000106:2;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1917266	1917367	.	-	.	source_transcript=hg002_chrY_paternal_33.1;source_transcript_name=hg002_chrY_paternal_33.1;source_gene=hg002_chrY_paternal_33;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_33;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_33.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_33.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000106;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000106;transcript_name=hg002_chrY_paternal_33.1;gene_name=DHRSX;ID=exon:HG003_chrY_T0000106:3;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1917266	1917367	.	-	2	source_transcript=hg002_chrY_paternal_33.1;source_transcript_name=hg002_chrY_paternal_33.1;source_gene=hg002_chrY_paternal_33;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_33;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_33.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_33.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000106;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000106;transcript_name=hg002_chrY_paternal_33.1;gene_name=DHRSX;ID=CDS:HG003_chrY_T0000106:3;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1917368	2039907	.	-	.	source_transcript=hg002_chrY_paternal_33.1;source_transcript_name=hg002_chrY_paternal_33.1;source_gene=hg002_chrY_paternal_33;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_33;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_33.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_33.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000106;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000106;transcript_name=hg002_chrY_paternal_33.1;gene_name=DHRSX;ID=intron:HG003_chrY_T0000106:3;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2039908	2039976	.	-	.	source_transcript=hg002_chrY_paternal_33.1;source_transcript_name=hg002_chrY_paternal_33.1;source_gene=hg002_chrY_paternal_33;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_33;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_33.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_33.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000106;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000106;transcript_name=hg002_chrY_paternal_33.1;gene_name=DHRSX;ID=exon:HG003_chrY_T0000106:4;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2039908	2039976	.	-	2	source_transcript=hg002_chrY_paternal_33.1;source_transcript_name=hg002_chrY_paternal_33.1;source_gene=hg002_chrY_paternal_33;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_33;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_33.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_33.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000106;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000106;transcript_name=hg002_chrY_paternal_33.1;gene_name=DHRSX;ID=CDS:HG003_chrY_T0000106:4;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2039977	2056360	.	-	.	source_transcript=hg002_chrY_paternal_33.1;source_transcript_name=hg002_chrY_paternal_33.1;source_gene=hg002_chrY_paternal_33;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_33;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_33.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_33.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000106;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000106;transcript_name=hg002_chrY_paternal_33.1;gene_name=DHRSX;ID=intron:HG003_chrY_T0000106:4;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2056361	2056468	.	-	.	source_transcript=hg002_chrY_paternal_33.1;source_transcript_name=hg002_chrY_paternal_33.1;source_gene=hg002_chrY_paternal_33;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_33;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_33.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_33.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000106;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000106;transcript_name=hg002_chrY_paternal_33.1;gene_name=DHRSX;ID=exon:HG003_chrY_T0000106:5;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2056361	2056468	.	-	2	source_transcript=hg002_chrY_paternal_33.1;source_transcript_name=hg002_chrY_paternal_33.1;source_gene=hg002_chrY_paternal_33;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_33;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_33.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_33.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000106;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000106;transcript_name=hg002_chrY_paternal_33.1;gene_name=DHRSX;ID=CDS:HG003_chrY_T0000106:5;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2056469	2132007	.	-	.	source_transcript=hg002_chrY_paternal_33.1;source_transcript_name=hg002_chrY_paternal_33.1;source_gene=hg002_chrY_paternal_33;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_33;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_33.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_33.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000106;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000106;transcript_name=hg002_chrY_paternal_33.1;gene_name=DHRSX;ID=intron:HG003_chrY_T0000106:5;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2132008	2132167	.	-	.	source_transcript=hg002_chrY_paternal_33.1;source_transcript_name=hg002_chrY_paternal_33.1;source_gene=hg002_chrY_paternal_33;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_33;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_33.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_33.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000106;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000106;transcript_name=hg002_chrY_paternal_33.1;gene_name=DHRSX;ID=exon:HG003_chrY_T0000106:6;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2132008	2132116	.	-	0	source_transcript=hg002_chrY_paternal_33.1;source_transcript_name=hg002_chrY_paternal_33.1;source_gene=hg002_chrY_paternal_33;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_33;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_33.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_33.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000106;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000106;transcript_name=hg002_chrY_paternal_33.1;gene_name=DHRSX;ID=CDS:HG003_chrY_T0000106:6;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2132114	2132116	.	-	0	source_transcript=hg002_chrY_paternal_33.1;source_transcript_name=hg002_chrY_paternal_33.1;source_gene=hg002_chrY_paternal_33;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_33;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_33.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_33.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000106;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000106;transcript_name=hg002_chrY_paternal_33.1;gene_name=DHRSX;ID=start_codon:HG003_chrY_T0000106;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	1951719	1968775	.	+	.	source_gene_common_name=LOC124905239;source_gene=hg002_chrY_paternal_34;alternative_source_transcripts=hg002_chrY_paternal_34.1,hg002_chrY_paternal_34.1;gene_id=HG003_chrY_G0000028;gene_biotype=lncRNA;gene_name=LOC124905239;gene_sources=liftoff;ID=HG003_chrY_G0000028;Name=LOC124905239
HG003_chrY	CAT	transcript	1951719	1968775	1000	+	.	source_transcript=hg002_chrY_paternal_34.1;source_transcript_name=hg002_chrY_paternal_34.1;source_gene=hg002_chrY_paternal_34;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_34;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_34.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_34.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905239;alternative_source_transcripts=hg002_chrY_paternal_34.1,hg002_chrY_paternal_34.1;transcript_id=HG003_chrY_T0000107;gene_id=HG003_chrY_G0000028;Parent=HG003_chrY_G0000028;transcript_name=hg002_chrY_paternal_34.1;gene_name=LOC124905239;ID=HG003_chrY_T0000107;Name=LOC124905239
HG003_chrY	CAT	exon	1951719	1952996	.	+	.	source_transcript=hg002_chrY_paternal_34.1;source_transcript_name=hg002_chrY_paternal_34.1;source_gene=hg002_chrY_paternal_34;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_34;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_34.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_34.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905239;alternative_source_transcripts=hg002_chrY_paternal_34.1,hg002_chrY_paternal_34.1;transcript_id=HG003_chrY_T0000107;gene_id=HG003_chrY_G0000028;Parent=HG003_chrY_T0000107;transcript_name=hg002_chrY_paternal_34.1;gene_name=LOC124905239;ID=exon:HG003_chrY_T0000107:0;Name=LOC124905239;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1952997	1960497	.	+	.	source_transcript=hg002_chrY_paternal_34.1;source_transcript_name=hg002_chrY_paternal_34.1;source_gene=hg002_chrY_paternal_34;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_34;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_34.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_34.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905239;alternative_source_transcripts=hg002_chrY_paternal_34.1,hg002_chrY_paternal_34.1;transcript_id=HG003_chrY_T0000107;gene_id=HG003_chrY_G0000028;Parent=HG003_chrY_T0000107;transcript_name=hg002_chrY_paternal_34.1;gene_name=LOC124905239;ID=intron:HG003_chrY_T0000107:0;Name=LOC124905239;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1960498	1960624	.	+	.	source_transcript=hg002_chrY_paternal_34.1;source_transcript_name=hg002_chrY_paternal_34.1;source_gene=hg002_chrY_paternal_34;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_34;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_34.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_34.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905239;alternative_source_transcripts=hg002_chrY_paternal_34.1,hg002_chrY_paternal_34.1;transcript_id=HG003_chrY_T0000107;gene_id=HG003_chrY_G0000028;Parent=HG003_chrY_T0000107;transcript_name=hg002_chrY_paternal_34.1;gene_name=LOC124905239;ID=exon:HG003_chrY_T0000107:1;Name=LOC124905239;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1960625	1968608	.	+	.	source_transcript=hg002_chrY_paternal_34.1;source_transcript_name=hg002_chrY_paternal_34.1;source_gene=hg002_chrY_paternal_34;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_34;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_34.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_34.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905239;alternative_source_transcripts=hg002_chrY_paternal_34.1,hg002_chrY_paternal_34.1;transcript_id=HG003_chrY_T0000107;gene_id=HG003_chrY_G0000028;Parent=HG003_chrY_T0000107;transcript_name=hg002_chrY_paternal_34.1;gene_name=LOC124905239;ID=intron:HG003_chrY_T0000107:1;Name=LOC124905239;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1968609	1968775	.	+	.	source_transcript=hg002_chrY_paternal_34.1;source_transcript_name=hg002_chrY_paternal_34.1;source_gene=hg002_chrY_paternal_34;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_34;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_34.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_34.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905239;alternative_source_transcripts=hg002_chrY_paternal_34.1,hg002_chrY_paternal_34.1;transcript_id=HG003_chrY_T0000107;gene_id=HG003_chrY_G0000028;Parent=HG003_chrY_T0000107;transcript_name=hg002_chrY_paternal_34.1;gene_name=LOC124905239;ID=exon:HG003_chrY_T0000107:2;Name=LOC124905239;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	2117623	2132167	.	-	.	source_gene_common_name=ZBED1;source_gene=hg002_chrY_paternal_35;alternative_source_transcripts=hg002_chrY_paternal_35.1,hg002_chrY_paternal_35.1;gene_id=HG003_chrY_G0000029;gene_biotype=protein_coding;gene_name=ZBED1;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000029;Name=ZBED1
HG003_chrY	CAT	transcript	2117623	2131816	100	-	.	source_transcript=hg002_chrY_paternal_35.1;source_transcript_name=hg002_chrY_paternal_35.3;source_gene=hg002_chrY_paternal_35;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_35;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_35.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_35.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=hg002_chrY_paternal_35.1,hg002_chrY_paternal_35.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000108;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_G0000029;transcript_name=hg002_chrY_paternal_35.3;gene_name=ZBED1;ID=HG003_chrY_T0000108;Name=ZBED1
HG003_chrY	CAT	exon	2117623	2121960	.	-	.	source_transcript=hg002_chrY_paternal_35.1;source_transcript_name=hg002_chrY_paternal_35.3;source_gene=hg002_chrY_paternal_35;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_35;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_35.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_35.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=hg002_chrY_paternal_35.1,hg002_chrY_paternal_35.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000108;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_T0000108;transcript_name=hg002_chrY_paternal_35.3;gene_name=ZBED1;ID=exon:HG003_chrY_T0000108:0;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2119823	2121907	.	-	0	source_transcript=hg002_chrY_paternal_35.1;source_transcript_name=hg002_chrY_paternal_35.3;source_gene=hg002_chrY_paternal_35;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_35;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_35.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_35.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=hg002_chrY_paternal_35.1,hg002_chrY_paternal_35.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000108;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_T0000108;transcript_name=hg002_chrY_paternal_35.3;gene_name=ZBED1;ID=CDS:HG003_chrY_T0000108:0;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	2119823	2119825	.	-	0	source_transcript=hg002_chrY_paternal_35.1;source_transcript_name=hg002_chrY_paternal_35.3;source_gene=hg002_chrY_paternal_35;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_35;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_35.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_35.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=hg002_chrY_paternal_35.1,hg002_chrY_paternal_35.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000108;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_T0000108;transcript_name=hg002_chrY_paternal_35.3;gene_name=ZBED1;ID=stop_codon:HG003_chrY_T0000108;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2121905	2121907	.	-	0	source_transcript=hg002_chrY_paternal_35.1;source_transcript_name=hg002_chrY_paternal_35.3;source_gene=hg002_chrY_paternal_35;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_35;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_35.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_35.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=hg002_chrY_paternal_35.1,hg002_chrY_paternal_35.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000108;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_T0000108;transcript_name=hg002_chrY_paternal_35.3;gene_name=ZBED1;ID=start_codon:HG003_chrY_T0000108;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2121961	2131501	.	-	.	source_transcript=hg002_chrY_paternal_35.1;source_transcript_name=hg002_chrY_paternal_35.3;source_gene=hg002_chrY_paternal_35;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_35;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_35.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_35.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=hg002_chrY_paternal_35.1,hg002_chrY_paternal_35.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000108;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_T0000108;transcript_name=hg002_chrY_paternal_35.3;gene_name=ZBED1;ID=intron:HG003_chrY_T0000108:0;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2131502	2131816	.	-	.	source_transcript=hg002_chrY_paternal_35.1;source_transcript_name=hg002_chrY_paternal_35.3;source_gene=hg002_chrY_paternal_35;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_35;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_35.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_35.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=hg002_chrY_paternal_35.1,hg002_chrY_paternal_35.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000108;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_T0000108;transcript_name=hg002_chrY_paternal_35.3;gene_name=ZBED1;ID=exon:HG003_chrY_T0000108:1;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2117623	2132167	100	-	.	source_transcript=hg002_chrY_paternal_35.2;source_transcript_name=hg002_chrY_paternal_35.3;source_gene=hg002_chrY_paternal_35;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_35;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_35.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_35.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=hg002_chrY_paternal_35.2,hg002_chrY_paternal_35.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000109;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_G0000029;transcript_name=hg002_chrY_paternal_35.3;gene_name=ZBED1;ID=HG003_chrY_T0000109;Name=ZBED1
HG003_chrY	CAT	exon	2117623	2121960	.	-	.	source_transcript=hg002_chrY_paternal_35.2;source_transcript_name=hg002_chrY_paternal_35.3;source_gene=hg002_chrY_paternal_35;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_35;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_35.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_35.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=hg002_chrY_paternal_35.2,hg002_chrY_paternal_35.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000109;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_T0000109;transcript_name=hg002_chrY_paternal_35.3;gene_name=ZBED1;ID=exon:HG003_chrY_T0000109:0;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2119823	2121907	.	-	0	source_transcript=hg002_chrY_paternal_35.2;source_transcript_name=hg002_chrY_paternal_35.3;source_gene=hg002_chrY_paternal_35;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_35;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_35.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_35.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=hg002_chrY_paternal_35.2,hg002_chrY_paternal_35.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000109;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_T0000109;transcript_name=hg002_chrY_paternal_35.3;gene_name=ZBED1;ID=CDS:HG003_chrY_T0000109:0;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	2119823	2119825	.	-	0	source_transcript=hg002_chrY_paternal_35.2;source_transcript_name=hg002_chrY_paternal_35.3;source_gene=hg002_chrY_paternal_35;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_35;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_35.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_35.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=hg002_chrY_paternal_35.2,hg002_chrY_paternal_35.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000109;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_T0000109;transcript_name=hg002_chrY_paternal_35.3;gene_name=ZBED1;ID=stop_codon:HG003_chrY_T0000109;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2121905	2121907	.	-	0	source_transcript=hg002_chrY_paternal_35.2;source_transcript_name=hg002_chrY_paternal_35.3;source_gene=hg002_chrY_paternal_35;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_35;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_35.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_35.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=hg002_chrY_paternal_35.2,hg002_chrY_paternal_35.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000109;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_T0000109;transcript_name=hg002_chrY_paternal_35.3;gene_name=ZBED1;ID=start_codon:HG003_chrY_T0000109;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2121961	2132007	.	-	.	source_transcript=hg002_chrY_paternal_35.2;source_transcript_name=hg002_chrY_paternal_35.3;source_gene=hg002_chrY_paternal_35;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_35;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_35.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_35.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=hg002_chrY_paternal_35.2,hg002_chrY_paternal_35.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000109;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_T0000109;transcript_name=hg002_chrY_paternal_35.3;gene_name=ZBED1;ID=intron:HG003_chrY_T0000109:0;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2132008	2132167	.	-	.	source_transcript=hg002_chrY_paternal_35.2;source_transcript_name=hg002_chrY_paternal_35.3;source_gene=hg002_chrY_paternal_35;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_35;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_35.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_35.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=hg002_chrY_paternal_35.2,hg002_chrY_paternal_35.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000109;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_T0000109;transcript_name=hg002_chrY_paternal_35.3;gene_name=ZBED1;ID=exon:HG003_chrY_T0000109:1;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2117623	2132167	100	-	.	source_transcript=hg002_chrY_paternal_35.3;source_transcript_name=hg002_chrY_paternal_35.3;source_gene=hg002_chrY_paternal_35;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_35;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_35.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_35.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=hg002_chrY_paternal_35.3,hg002_chrY_paternal_35.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000110;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_G0000029;transcript_name=hg002_chrY_paternal_35.3;gene_name=ZBED1;ID=HG003_chrY_T0000110;Name=ZBED1
HG003_chrY	CAT	exon	2117623	2121957	.	-	.	source_transcript=hg002_chrY_paternal_35.3;source_transcript_name=hg002_chrY_paternal_35.3;source_gene=hg002_chrY_paternal_35;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_35;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_35.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_35.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=hg002_chrY_paternal_35.3,hg002_chrY_paternal_35.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000110;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_T0000110;transcript_name=hg002_chrY_paternal_35.3;gene_name=ZBED1;ID=exon:HG003_chrY_T0000110:0;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2119823	2121907	.	-	0	source_transcript=hg002_chrY_paternal_35.3;source_transcript_name=hg002_chrY_paternal_35.3;source_gene=hg002_chrY_paternal_35;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_35;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_35.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_35.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=hg002_chrY_paternal_35.3,hg002_chrY_paternal_35.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000110;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_T0000110;transcript_name=hg002_chrY_paternal_35.3;gene_name=ZBED1;ID=CDS:HG003_chrY_T0000110:0;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	2119823	2119825	.	-	0	source_transcript=hg002_chrY_paternal_35.3;source_transcript_name=hg002_chrY_paternal_35.3;source_gene=hg002_chrY_paternal_35;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_35;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_35.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_35.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=hg002_chrY_paternal_35.3,hg002_chrY_paternal_35.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000110;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_T0000110;transcript_name=hg002_chrY_paternal_35.3;gene_name=ZBED1;ID=stop_codon:HG003_chrY_T0000110;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2121905	2121907	.	-	0	source_transcript=hg002_chrY_paternal_35.3;source_transcript_name=hg002_chrY_paternal_35.3;source_gene=hg002_chrY_paternal_35;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_35;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_35.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_35.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=hg002_chrY_paternal_35.3,hg002_chrY_paternal_35.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000110;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_T0000110;transcript_name=hg002_chrY_paternal_35.3;gene_name=ZBED1;ID=start_codon:HG003_chrY_T0000110;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2121958	2132007	.	-	.	source_transcript=hg002_chrY_paternal_35.3;source_transcript_name=hg002_chrY_paternal_35.3;source_gene=hg002_chrY_paternal_35;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_35;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_35.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_35.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=hg002_chrY_paternal_35.3,hg002_chrY_paternal_35.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000110;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_T0000110;transcript_name=hg002_chrY_paternal_35.3;gene_name=ZBED1;ID=intron:HG003_chrY_T0000110:0;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2132008	2132167	.	-	.	source_transcript=hg002_chrY_paternal_35.3;source_transcript_name=hg002_chrY_paternal_35.3;source_gene=hg002_chrY_paternal_35;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_35;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_35.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_35.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=hg002_chrY_paternal_35.3,hg002_chrY_paternal_35.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000110;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_T0000110;transcript_name=hg002_chrY_paternal_35.3;gene_name=ZBED1;ID=exon:HG003_chrY_T0000110:1;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	2197029	2240586	.	-	.	source_gene_common_name=LOC101928092;source_gene=hg002_chrY_paternal_36;alternative_source_transcripts=hg002_chrY_paternal_36.1,hg002_chrY_paternal_36.1;gene_id=HG003_chrY_G0000030;gene_biotype=lncRNA;gene_name=LOC101928092;gene_sources=liftoff;ID=HG003_chrY_G0000030;Name=LOC101928092
HG003_chrY	CAT	transcript	2197029	2205595	1000	-	.	source_transcript=hg002_chrY_paternal_36.1;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.1,hg002_chrY_paternal_36.1;transcript_id=HG003_chrY_T0000111;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_G0000030;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=HG003_chrY_T0000111;Name=LOC101928092
HG003_chrY	CAT	exon	2197029	2198292	.	-	.	source_transcript=hg002_chrY_paternal_36.1;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.1,hg002_chrY_paternal_36.1;transcript_id=HG003_chrY_T0000111;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000111;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=exon:HG003_chrY_T0000111:0;Name=LOC101928092;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2198293	2201009	.	-	.	source_transcript=hg002_chrY_paternal_36.1;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.1,hg002_chrY_paternal_36.1;transcript_id=HG003_chrY_T0000111;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000111;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=intron:HG003_chrY_T0000111:0;Name=LOC101928092;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2201010	2201165	.	-	.	source_transcript=hg002_chrY_paternal_36.1;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.1,hg002_chrY_paternal_36.1;transcript_id=HG003_chrY_T0000111;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000111;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=exon:HG003_chrY_T0000111:1;Name=LOC101928092;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2201166	2205057	.	-	.	source_transcript=hg002_chrY_paternal_36.1;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.1,hg002_chrY_paternal_36.1;transcript_id=HG003_chrY_T0000111;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000111;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=intron:HG003_chrY_T0000111:1;Name=LOC101928092;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2205058	2205595	.	-	.	source_transcript=hg002_chrY_paternal_36.1;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.1,hg002_chrY_paternal_36.1;transcript_id=HG003_chrY_T0000111;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000111;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=exon:HG003_chrY_T0000111:2;Name=LOC101928092;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2197029	2205595	1000	-	.	source_transcript=hg002_chrY_paternal_36.2;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.2,hg002_chrY_paternal_36.2;transcript_id=HG003_chrY_T0000112;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_G0000030;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=HG003_chrY_T0000112;Name=LOC101928092
HG003_chrY	CAT	exon	2197029	2198292	.	-	.	source_transcript=hg002_chrY_paternal_36.2;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.2,hg002_chrY_paternal_36.2;transcript_id=HG003_chrY_T0000112;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000112;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=exon:HG003_chrY_T0000112:0;Name=LOC101928092;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2198293	2201009	.	-	.	source_transcript=hg002_chrY_paternal_36.2;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.2,hg002_chrY_paternal_36.2;transcript_id=HG003_chrY_T0000112;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000112;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=intron:HG003_chrY_T0000112:0;Name=LOC101928092;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2201010	2201165	.	-	.	source_transcript=hg002_chrY_paternal_36.2;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.2,hg002_chrY_paternal_36.2;transcript_id=HG003_chrY_T0000112;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000112;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=exon:HG003_chrY_T0000112:1;Name=LOC101928092;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2201166	2205074	.	-	.	source_transcript=hg002_chrY_paternal_36.2;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.2,hg002_chrY_paternal_36.2;transcript_id=HG003_chrY_T0000112;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000112;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=intron:HG003_chrY_T0000112:1;Name=LOC101928092;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2205075	2205595	.	-	.	source_transcript=hg002_chrY_paternal_36.2;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.2,hg002_chrY_paternal_36.2;transcript_id=HG003_chrY_T0000112;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000112;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=exon:HG003_chrY_T0000112:2;Name=LOC101928092;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2197029	2240518	1000	-	.	source_transcript=hg002_chrY_paternal_36.3;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.3,hg002_chrY_paternal_36.3;transcript_id=HG003_chrY_T0000113;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_G0000030;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=HG003_chrY_T0000113;Name=LOC101928092
HG003_chrY	CAT	exon	2197029	2198292	.	-	.	source_transcript=hg002_chrY_paternal_36.3;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.3,hg002_chrY_paternal_36.3;transcript_id=HG003_chrY_T0000113;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000113;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=exon:HG003_chrY_T0000113:0;Name=LOC101928092;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2198293	2201009	.	-	.	source_transcript=hg002_chrY_paternal_36.3;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.3,hg002_chrY_paternal_36.3;transcript_id=HG003_chrY_T0000113;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000113;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=intron:HG003_chrY_T0000113:0;Name=LOC101928092;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2201010	2201165	.	-	.	source_transcript=hg002_chrY_paternal_36.3;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.3,hg002_chrY_paternal_36.3;transcript_id=HG003_chrY_T0000113;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000113;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=exon:HG003_chrY_T0000113:1;Name=LOC101928092;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2201166	2240451	.	-	.	source_transcript=hg002_chrY_paternal_36.3;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.3,hg002_chrY_paternal_36.3;transcript_id=HG003_chrY_T0000113;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000113;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=intron:HG003_chrY_T0000113:1;Name=LOC101928092;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2240452	2240518	.	-	.	source_transcript=hg002_chrY_paternal_36.3;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.3,hg002_chrY_paternal_36.3;transcript_id=HG003_chrY_T0000113;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000113;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=exon:HG003_chrY_T0000113:2;Name=LOC101928092;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2197029	2240529	1000	-	.	source_transcript=hg002_chrY_paternal_36.4;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.4,hg002_chrY_paternal_36.4;transcript_id=HG003_chrY_T0000114;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_G0000030;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=HG003_chrY_T0000114;Name=LOC101928092
HG003_chrY	CAT	exon	2197029	2198292	.	-	.	source_transcript=hg002_chrY_paternal_36.4;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.4,hg002_chrY_paternal_36.4;transcript_id=HG003_chrY_T0000114;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000114;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=exon:HG003_chrY_T0000114:0;Name=LOC101928092;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2198293	2201009	.	-	.	source_transcript=hg002_chrY_paternal_36.4;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.4,hg002_chrY_paternal_36.4;transcript_id=HG003_chrY_T0000114;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000114;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=intron:HG003_chrY_T0000114:0;Name=LOC101928092;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2201010	2201165	.	-	.	source_transcript=hg002_chrY_paternal_36.4;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.4,hg002_chrY_paternal_36.4;transcript_id=HG003_chrY_T0000114;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000114;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=exon:HG003_chrY_T0000114:1;Name=LOC101928092;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2201166	2205057	.	-	.	source_transcript=hg002_chrY_paternal_36.4;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.4,hg002_chrY_paternal_36.4;transcript_id=HG003_chrY_T0000114;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000114;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=intron:HG003_chrY_T0000114:1;Name=LOC101928092;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2205058	2205251	.	-	.	source_transcript=hg002_chrY_paternal_36.4;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.4,hg002_chrY_paternal_36.4;transcript_id=HG003_chrY_T0000114;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000114;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=exon:HG003_chrY_T0000114:2;Name=LOC101928092;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2205252	2240451	.	-	.	source_transcript=hg002_chrY_paternal_36.4;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.4,hg002_chrY_paternal_36.4;transcript_id=HG003_chrY_T0000114;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000114;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=intron:HG003_chrY_T0000114:2;Name=LOC101928092;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2240452	2240529	.	-	.	source_transcript=hg002_chrY_paternal_36.4;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.4,hg002_chrY_paternal_36.4;transcript_id=HG003_chrY_T0000114;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000114;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=exon:HG003_chrY_T0000114:3;Name=LOC101928092;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2197029	2240586	1000	-	.	source_transcript=hg002_chrY_paternal_36.5;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.5,hg002_chrY_paternal_36.5;transcript_id=HG003_chrY_T0000115;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_G0000030;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=HG003_chrY_T0000115;Name=LOC101928092
HG003_chrY	CAT	exon	2197029	2198292	.	-	.	source_transcript=hg002_chrY_paternal_36.5;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.5,hg002_chrY_paternal_36.5;transcript_id=HG003_chrY_T0000115;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000115;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=exon:HG003_chrY_T0000115:0;Name=LOC101928092;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2198293	2240451	.	-	.	source_transcript=hg002_chrY_paternal_36.5;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.5,hg002_chrY_paternal_36.5;transcript_id=HG003_chrY_T0000115;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000115;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=intron:HG003_chrY_T0000115:0;Name=LOC101928092;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2240452	2240586	.	-	.	source_transcript=hg002_chrY_paternal_36.5;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.5,hg002_chrY_paternal_36.5;transcript_id=HG003_chrY_T0000115;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000115;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=exon:HG003_chrY_T0000115:1;Name=LOC101928092;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	2240537	2240598	.	+	.	source_gene_common_name=MIR6089;source_gene=hg002_chrY_paternal_37;alternative_source_transcripts=hg002_chrY_paternal_37.1,hg002_chrY_paternal_37.1;gene_id=HG003_chrY_G0000031;gene_biotype=miRNA;gene_name=MIR6089;gene_sources=liftoff;ID=HG003_chrY_G0000031;Name=MIR6089
HG003_chrY	CAT	transcript	2240537	2240600	1000	+	.	source_transcript=hg002_chrY_paternal_37.1;source_transcript_name=hg002_chrY_paternal_37.1;source_gene=hg002_chrY_paternal_37;source_gene_biotype=miRNA;original_gene_id=hg002_chrY_paternal_37;gene_biotype=miRNA;transcript_biotype=primary_transcript;alignment_id=hg002_chrY_paternal_37.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_37.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MIR6089;alternative_source_transcripts=hg002_chrY_paternal_37.1,hg002_chrY_paternal_37.1;transcript_id=HG003_chrY_T0000116;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_G0000031;transcript_name=hg002_chrY_paternal_37.1;gene_name=MIR6089;ID=HG003_chrY_T0000116;Name=MIR6089
HG003_chrY	CAT	exon	2240537	2240600	.	+	.	source_transcript=hg002_chrY_paternal_37.1;source_transcript_name=hg002_chrY_paternal_37.1;source_gene=hg002_chrY_paternal_37;source_gene_biotype=miRNA;original_gene_id=hg002_chrY_paternal_37;gene_biotype=miRNA;transcript_biotype=primary_transcript;alignment_id=hg002_chrY_paternal_37.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_37.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MIR6089;alternative_source_transcripts=hg002_chrY_paternal_37.1,hg002_chrY_paternal_37.1;transcript_id=HG003_chrY_T0000116;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000116;transcript_name=hg002_chrY_paternal_37.1;gene_name=MIR6089;ID=exon:HG003_chrY_T0000116:0;Name=MIR6089;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2240575	2240598	1000	+	.	source_transcript=hg002_chrY_paternal_37.2;source_transcript_name=hg002_chrY_paternal_37.1;source_gene=hg002_chrY_paternal_37;source_gene_biotype=miRNA;original_gene_id=hg002_chrY_paternal_37;gene_biotype=miRNA;transcript_biotype=miRNA;alignment_id=hg002_chrY_paternal_37.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_37.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MIR6089;alternative_source_transcripts=hg002_chrY_paternal_37.2,hg002_chrY_paternal_37.2;transcript_id=HG003_chrY_T0000117;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_G0000031;transcript_name=hg002_chrY_paternal_37.1;gene_name=MIR6089;ID=HG003_chrY_T0000117;Name=MIR6089
HG003_chrY	CAT	exon	2240575	2240598	.	+	.	source_transcript=hg002_chrY_paternal_37.2;source_transcript_name=hg002_chrY_paternal_37.1;source_gene=hg002_chrY_paternal_37;source_gene_biotype=miRNA;original_gene_id=hg002_chrY_paternal_37;gene_biotype=miRNA;transcript_biotype=miRNA;alignment_id=hg002_chrY_paternal_37.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_37.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MIR6089;alternative_source_transcripts=hg002_chrY_paternal_37.2,hg002_chrY_paternal_37.2;transcript_id=HG003_chrY_T0000117;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000117;transcript_name=hg002_chrY_paternal_37.1;gene_name=MIR6089;ID=exon:HG003_chrY_T0000117:0;Name=MIR6089;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	2240611	2288840	.	+	.	source_gene_common_name=CD99P1;source_gene=hg002_chrY_paternal_38;alternative_source_transcripts=hg002_chrY_paternal_38.1,hg002_chrY_paternal_38.1;gene_id=HG003_chrY_G0000032;gene_biotype=transcribed_pseudogene;gene_name=CD99P1;gene_sources=liftoff;ID=HG003_chrY_G0000032;Name=CD99P1
HG003_chrY	CAT	transcript	2240611	2269927	1000	+	.	source_transcript=hg002_chrY_paternal_38.1;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.1,hg002_chrY_paternal_38.1;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_G0000032;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=HG003_chrY_T0000118;Name=CD99P1
HG003_chrY	CAT	exon	2240611	2240815	.	+	.	source_transcript=hg002_chrY_paternal_38.1;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.1,hg002_chrY_paternal_38.1;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=exon:HG003_chrY_T0000118:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2240816	2242315	.	+	.	source_transcript=hg002_chrY_paternal_38.1;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.1,hg002_chrY_paternal_38.1;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=intron:HG003_chrY_T0000118:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=hg002_chrY_paternal_38.1;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.1,hg002_chrY_paternal_38.1;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=exon:HG003_chrY_T0000118:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2243461	.	+	.	source_transcript=hg002_chrY_paternal_38.1;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.1,hg002_chrY_paternal_38.1;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=intron:HG003_chrY_T0000118:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2243462	2243530	.	+	.	source_transcript=hg002_chrY_paternal_38.1;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.1,hg002_chrY_paternal_38.1;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=exon:HG003_chrY_T0000118:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2243531	2247126	.	+	.	source_transcript=hg002_chrY_paternal_38.1;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.1,hg002_chrY_paternal_38.1;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=intron:HG003_chrY_T0000118:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2247127	2247280	.	+	.	source_transcript=hg002_chrY_paternal_38.1;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.1,hg002_chrY_paternal_38.1;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=exon:HG003_chrY_T0000118:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2247281	2250049	.	+	.	source_transcript=hg002_chrY_paternal_38.1;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.1,hg002_chrY_paternal_38.1;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=intron:HG003_chrY_T0000118:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250050	2250094	.	+	.	source_transcript=hg002_chrY_paternal_38.1;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.1,hg002_chrY_paternal_38.1;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=exon:HG003_chrY_T0000118:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=hg002_chrY_paternal_38.1;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.1,hg002_chrY_paternal_38.1;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=intron:HG003_chrY_T0000118:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=hg002_chrY_paternal_38.1;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.1,hg002_chrY_paternal_38.1;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=exon:HG003_chrY_T0000118:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254001	.	+	.	source_transcript=hg002_chrY_paternal_38.1;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.1,hg002_chrY_paternal_38.1;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=intron:HG003_chrY_T0000118:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254002	2254046	.	+	.	source_transcript=hg002_chrY_paternal_38.1;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.1,hg002_chrY_paternal_38.1;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=exon:HG003_chrY_T0000118:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254047	2254696	.	+	.	source_transcript=hg002_chrY_paternal_38.1;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.1,hg002_chrY_paternal_38.1;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=intron:HG003_chrY_T0000118:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254697	2254765	.	+	.	source_transcript=hg002_chrY_paternal_38.1;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.1,hg002_chrY_paternal_38.1;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=exon:HG003_chrY_T0000118:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254766	2257913	.	+	.	source_transcript=hg002_chrY_paternal_38.1;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.1,hg002_chrY_paternal_38.1;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=intron:HG003_chrY_T0000118:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2257914	2257959	.	+	.	source_transcript=hg002_chrY_paternal_38.1;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.1,hg002_chrY_paternal_38.1;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=exon:HG003_chrY_T0000118:8;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2257960	2269571	.	+	.	source_transcript=hg002_chrY_paternal_38.1;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.1,hg002_chrY_paternal_38.1;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=intron:HG003_chrY_T0000118:8;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2269572	2269927	.	+	.	source_transcript=hg002_chrY_paternal_38.1;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.1,hg002_chrY_paternal_38.1;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=exon:HG003_chrY_T0000118:9;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2240611	2288840	1000	+	.	source_transcript=hg002_chrY_paternal_38.2;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.2,hg002_chrY_paternal_38.2;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_G0000032;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=HG003_chrY_T0000119;Name=CD99P1
HG003_chrY	CAT	exon	2240611	2240815	.	+	.	source_transcript=hg002_chrY_paternal_38.2;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.2,hg002_chrY_paternal_38.2;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=exon:HG003_chrY_T0000119:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2240816	2242315	.	+	.	source_transcript=hg002_chrY_paternal_38.2;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.2,hg002_chrY_paternal_38.2;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=intron:HG003_chrY_T0000119:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=hg002_chrY_paternal_38.2;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.2,hg002_chrY_paternal_38.2;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=exon:HG003_chrY_T0000119:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2243461	.	+	.	source_transcript=hg002_chrY_paternal_38.2;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.2,hg002_chrY_paternal_38.2;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=intron:HG003_chrY_T0000119:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2243462	2243530	.	+	.	source_transcript=hg002_chrY_paternal_38.2;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.2,hg002_chrY_paternal_38.2;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=exon:HG003_chrY_T0000119:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2243531	2247126	.	+	.	source_transcript=hg002_chrY_paternal_38.2;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.2,hg002_chrY_paternal_38.2;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=intron:HG003_chrY_T0000119:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2247127	2247280	.	+	.	source_transcript=hg002_chrY_paternal_38.2;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.2,hg002_chrY_paternal_38.2;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=exon:HG003_chrY_T0000119:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2247281	2250049	.	+	.	source_transcript=hg002_chrY_paternal_38.2;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.2,hg002_chrY_paternal_38.2;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=intron:HG003_chrY_T0000119:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250050	2250094	.	+	.	source_transcript=hg002_chrY_paternal_38.2;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.2,hg002_chrY_paternal_38.2;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=exon:HG003_chrY_T0000119:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=hg002_chrY_paternal_38.2;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.2,hg002_chrY_paternal_38.2;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=intron:HG003_chrY_T0000119:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=hg002_chrY_paternal_38.2;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.2,hg002_chrY_paternal_38.2;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=exon:HG003_chrY_T0000119:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254696	.	+	.	source_transcript=hg002_chrY_paternal_38.2;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.2,hg002_chrY_paternal_38.2;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=intron:HG003_chrY_T0000119:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254697	2254765	.	+	.	source_transcript=hg002_chrY_paternal_38.2;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.2,hg002_chrY_paternal_38.2;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=exon:HG003_chrY_T0000119:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254766	2257913	.	+	.	source_transcript=hg002_chrY_paternal_38.2;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.2,hg002_chrY_paternal_38.2;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=intron:HG003_chrY_T0000119:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2257914	2257959	.	+	.	source_transcript=hg002_chrY_paternal_38.2;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.2,hg002_chrY_paternal_38.2;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=exon:HG003_chrY_T0000119:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2257960	2286637	.	+	.	source_transcript=hg002_chrY_paternal_38.2;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.2,hg002_chrY_paternal_38.2;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=intron:HG003_chrY_T0000119:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2286638	2288840	.	+	.	source_transcript=hg002_chrY_paternal_38.2;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.2,hg002_chrY_paternal_38.2;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=exon:HG003_chrY_T0000119:8;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	2244303	2246658	.	-	.	source_gene_common_name=LINC00102;source_gene=hg002_chrY_paternal_39;alternative_source_transcripts=hg002_chrY_paternal_39.1,hg002_chrY_paternal_39.1;gene_id=HG003_chrY_G0000033;gene_biotype=lncRNA;gene_name=LINC00102;gene_sources=liftoff;ID=HG003_chrY_G0000033;Name=LINC00102
HG003_chrY	CAT	transcript	2244303	2246658	1000	-	.	source_transcript=hg002_chrY_paternal_39.1;source_transcript_name=hg002_chrY_paternal_39.1;source_gene=hg002_chrY_paternal_39;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_39;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_39.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_39.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00102;alternative_source_transcripts=hg002_chrY_paternal_39.1,hg002_chrY_paternal_39.1;transcript_id=HG003_chrY_T0000120;gene_id=HG003_chrY_G0000033;Parent=HG003_chrY_G0000033;transcript_name=hg002_chrY_paternal_39.1;gene_name=LINC00102;ID=HG003_chrY_T0000120;Name=LINC00102
HG003_chrY	CAT	exon	2244303	2245008	.	-	.	source_transcript=hg002_chrY_paternal_39.1;source_transcript_name=hg002_chrY_paternal_39.1;source_gene=hg002_chrY_paternal_39;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_39;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_39.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_39.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00102;alternative_source_transcripts=hg002_chrY_paternal_39.1,hg002_chrY_paternal_39.1;transcript_id=HG003_chrY_T0000120;gene_id=HG003_chrY_G0000033;Parent=HG003_chrY_T0000120;transcript_name=hg002_chrY_paternal_39.1;gene_name=LINC00102;ID=exon:HG003_chrY_T0000120:0;Name=LINC00102;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2245009	2246027	.	-	.	source_transcript=hg002_chrY_paternal_39.1;source_transcript_name=hg002_chrY_paternal_39.1;source_gene=hg002_chrY_paternal_39;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_39;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_39.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_39.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00102;alternative_source_transcripts=hg002_chrY_paternal_39.1,hg002_chrY_paternal_39.1;transcript_id=HG003_chrY_T0000120;gene_id=HG003_chrY_G0000033;Parent=HG003_chrY_T0000120;transcript_name=hg002_chrY_paternal_39.1;gene_name=LINC00102;ID=intron:HG003_chrY_T0000120:0;Name=LINC00102;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2246028	2246658	.	-	.	source_transcript=hg002_chrY_paternal_39.1;source_transcript_name=hg002_chrY_paternal_39.1;source_gene=hg002_chrY_paternal_39;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_39;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_39.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_39.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00102;alternative_source_transcripts=hg002_chrY_paternal_39.1,hg002_chrY_paternal_39.1;transcript_id=HG003_chrY_T0000120;gene_id=HG003_chrY_G0000033;Parent=HG003_chrY_T0000120;transcript_name=hg002_chrY_paternal_39.1;gene_name=LINC00102;ID=exon:HG003_chrY_T0000120:1;Name=LINC00102;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	2322695	2372709	.	+	.	source_gene_common_name=CD99;source_gene=hg002_chrY_paternal_40;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;gene_id=HG003_chrY_G0000034;gene_biotype=protein_coding;gene_name=CD99;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000034;Name=CD99
HG003_chrY	CAT	transcript	2322695	2367836	100	+	.	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000121;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_G0000034;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=HG003_chrY_T0000121;Name=CD99
HG003_chrY	CAT	exon	2322695	2322827	.	+	.	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000121;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000121;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000121:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2322761	2322827	.	+	0	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000121;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000121;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000121:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2322761	2322763	.	+	0	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000121;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000121;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=start_codon:HG003_chrY_T0000121;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2322828	2345827	.	+	.	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000121;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000121;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000121:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2345828	2345860	.	+	.	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000121;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000121;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000121:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2345828	2345860	.	+	2	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000121;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000121;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000121:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2345861	2349014	.	+	.	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000121;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000121;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000121:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2349015	2349062	.	+	.	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000121;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000121;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000121:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2349015	2349062	.	+	2	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000121;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000121;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000121:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2349063	2351068	.	+	.	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000121;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000121;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000121:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2351069	2351113	.	+	.	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000121;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000121;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000121:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2351069	2351113	.	+	2	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000121;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000121;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000121:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2351114	2351763	.	+	.	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000121;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000121;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000121:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2351764	2351832	.	+	.	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000121;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000121;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000121:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2351764	2351832	.	+	2	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000121;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000121;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000121:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2351833	2354035	.	+	.	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000121;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000121;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000121:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2354036	2354083	.	+	.	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000121;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000121;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000121:5;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2354036	2354083	.	+	2	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000121;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000121;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000121:5;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2354084	2354722	.	+	.	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000121;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000121;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000121:5;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2354723	2354773	.	+	.	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000121;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000121;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000121:6;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2354723	2354773	.	+	2	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000121;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000121;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000121:6;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2354774	2357668	.	+	.	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000121;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000121;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000121:6;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2357669	2357782	.	+	.	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000121;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000121;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000121:7;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2357669	2357782	.	+	2	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000121;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000121;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000121:7;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2357783	2364759	.	+	.	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000121;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000121;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000121:7;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2364760	2367836	.	+	.	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000121;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000121;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000121:8;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2364760	2364767	.	+	2	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000121;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000121;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000121:8;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	2364765	2364767	.	+	0	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000121;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000121;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=stop_codon:HG003_chrY_T0000121;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2322695	2372709	100	+	.	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000122;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_G0000034;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=HG003_chrY_T0000122;Name=CD99
HG003_chrY	CAT	exon	2322695	2322827	.	+	.	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000122;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000122;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000122:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2322761	2322827	.	+	0	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000122;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000122;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000122:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2322761	2322763	.	+	0	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000122;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000122;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=start_codon:HG003_chrY_T0000122;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2322828	2345827	.	+	.	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000122;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000122;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000122:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2345828	2345860	.	+	.	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000122;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000122;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000122:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2345828	2345860	.	+	2	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000122;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000122;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000122:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2345861	2351068	.	+	.	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000122;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000122;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000122:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2351069	2351113	.	+	.	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000122;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000122;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000122:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2351069	2351113	.	+	2	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000122;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000122;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000122:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2351114	2351763	.	+	.	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000122;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000122;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000122:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2351764	2351832	.	+	.	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000122;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000122;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000122:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2351764	2351832	.	+	2	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000122;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000122;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000122:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2351833	2354035	.	+	.	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000122;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000122;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000122:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2354036	2354083	.	+	.	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000122;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000122;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000122:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2354036	2354083	.	+	2	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000122;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000122;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000122:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2354084	2354722	.	+	.	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000122;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000122;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000122:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2354723	2354773	.	+	.	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000122;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000122;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000122:5;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2354723	2354773	.	+	2	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000122;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000122;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000122:5;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2354774	2357668	.	+	.	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000122;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000122;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000122:5;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2357669	2357782	.	+	.	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000122;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000122;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000122:6;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2357669	2357782	.	+	2	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000122;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000122;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000122:6;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2357783	2369599	.	+	.	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000122;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000122;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000122:6;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2369600	2369656	.	+	.	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000122;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000122;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000122:7;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2369600	2369656	.	+	2	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000122;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000122;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000122:7;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2369657	2372178	.	+	.	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000122;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000122;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000122:7;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2372179	2372709	.	+	.	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000122;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000122;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000122:8;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2372179	2372204	.	+	2	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000122;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000122;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000122:8;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	2372202	2372204	.	+	0	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000122;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000122;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=stop_codon:HG003_chrY_T0000122;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2322695	2372709	100	+	.	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000123;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_G0000034;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=HG003_chrY_T0000123;Name=CD99
HG003_chrY	CAT	exon	2322695	2322827	.	+	.	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000123;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000123;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000123:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2322761	2322827	.	+	0	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000123;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000123;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000123:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2322761	2322763	.	+	0	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000123;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000123;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=start_codon:HG003_chrY_T0000123;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2322828	2345827	.	+	.	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000123;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000123;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000123:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2345828	2345860	.	+	.	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000123;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000123;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000123:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2345828	2345860	.	+	2	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000123;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000123;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000123:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2345861	2349014	.	+	.	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000123;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000123;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000123:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2349015	2349062	.	+	.	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000123;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000123;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000123:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2349015	2349062	.	+	2	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000123;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000123;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000123:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2349063	2351068	.	+	.	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000123;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000123;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000123:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2351069	2351113	.	+	.	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000123;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000123;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000123:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2351069	2351113	.	+	2	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000123;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000123;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000123:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2351114	2351763	.	+	.	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000123;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000123;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000123:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2351764	2351832	.	+	.	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000123;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000123;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000123:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2351764	2351832	.	+	2	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000123;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000123;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000123:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2351833	2354035	.	+	.	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000123;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000123;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000123:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2354036	2354083	.	+	.	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000123;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000123;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000123:5;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2354036	2354083	.	+	2	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000123;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000123;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000123:5;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2354084	2354722	.	+	.	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000123;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000123;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000123:5;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2354723	2354773	.	+	.	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000123;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000123;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000123:6;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2354723	2354773	.	+	2	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000123;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000123;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000123:6;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2354774	2357668	.	+	.	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000123;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000123;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000123:6;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2357669	2357782	.	+	.	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000123;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000123;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000123:7;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2357669	2357782	.	+	2	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000123;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000123;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000123:7;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2357783	2369602	.	+	.	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000123;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000123;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000123:7;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2369603	2369656	.	+	.	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000123;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000123;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000123:8;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2369603	2369656	.	+	2	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000123;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000123;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000123:8;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2369657	2372178	.	+	.	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000123;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000123;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000123:8;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2372179	2372709	.	+	.	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000123;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000123;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000123:9;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2372179	2372204	.	+	2	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000123;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000123;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000123:9;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	2372202	2372204	.	+	0	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000123;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000123;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=stop_codon:HG003_chrY_T0000123;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2322695	2372709	100	+	.	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000124;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_G0000034;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=HG003_chrY_T0000124;Name=CD99
HG003_chrY	CAT	exon	2322695	2322827	.	+	.	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000124;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000124;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000124:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2322761	2322827	.	+	0	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000124;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000124;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000124:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2322761	2322763	.	+	0	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000124;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000124;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=start_codon:HG003_chrY_T0000124;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2322828	2345827	.	+	.	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000124;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000124;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000124:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2345828	2345860	.	+	.	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000124;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000124;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000124:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2345828	2345860	.	+	2	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000124;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000124;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000124:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2345861	2351068	.	+	.	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000124;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000124;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000124:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2351069	2351113	.	+	.	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000124;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000124;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000124:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2351069	2351113	.	+	2	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000124;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000124;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000124:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2351114	2351763	.	+	.	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000124;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000124;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000124:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2351764	2351832	.	+	.	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000124;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000124;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000124:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2351764	2351832	.	+	2	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000124;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000124;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000124:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2351833	2354035	.	+	.	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000124;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000124;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000124:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2354036	2354083	.	+	.	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000124;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000124;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000124:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2354036	2354083	.	+	2	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000124;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000124;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000124:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2354084	2354722	.	+	.	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000124;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000124;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000124:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2354723	2354773	.	+	.	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000124;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000124;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000124:5;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2354723	2354773	.	+	2	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000124;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000124;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000124:5;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2354774	2357668	.	+	.	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000124;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000124;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000124:5;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2357669	2357782	.	+	.	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000124;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000124;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000124:6;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2357669	2357782	.	+	2	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000124;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000124;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000124:6;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2357783	2369602	.	+	.	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000124;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000124;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000124:6;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2369603	2369656	.	+	.	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000124;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000124;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000124:7;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2369603	2369656	.	+	2	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000124;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000124;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000124:7;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2369657	2372178	.	+	.	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000124;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000124;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000124:7;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2372179	2372709	.	+	.	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000124;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000124;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000124:8;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2372179	2372204	.	+	2	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000124;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000124;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000124:8;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	2372202	2372204	.	+	0	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000124;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000124;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=stop_codon:HG003_chrY_T0000124;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2322695	2372709	100	+	.	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000125;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_G0000034;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=HG003_chrY_T0000125;Name=CD99
HG003_chrY	CAT	exon	2322695	2322827	.	+	.	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000125;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000125;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000125:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2322761	2322827	.	+	0	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000125;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000125;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000125:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2322761	2322763	.	+	0	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000125;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000125;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=start_codon:HG003_chrY_T0000125;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2322828	2345827	.	+	.	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000125;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000125;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000125:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2345828	2345860	.	+	.	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000125;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000125;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000125:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2345828	2345860	.	+	2	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000125;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000125;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000125:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2345861	2349014	.	+	.	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000125;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000125;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000125:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2349015	2349062	.	+	.	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000125;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000125;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000125:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2349015	2349062	.	+	2	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000125;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000125;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000125:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2349063	2351068	.	+	.	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000125;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000125;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000125:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2351069	2351113	.	+	.	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000125;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000125;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000125:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2351069	2351113	.	+	2	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000125;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000125;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000125:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2351114	2351763	.	+	.	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000125;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000125;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000125:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2351764	2351832	.	+	.	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000125;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000125;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000125:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2351764	2351832	.	+	2	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000125;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000125;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000125:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2351833	2354035	.	+	.	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000125;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000125;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000125:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2354036	2354083	.	+	.	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000125;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000125;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000125:5;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2354036	2354083	.	+	2	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000125;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000125;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000125:5;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2354084	2357668	.	+	.	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000125;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000125;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000125:5;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2357669	2357782	.	+	.	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000125;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000125;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000125:6;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2357669	2357782	.	+	2	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000125;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000125;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000125:6;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2357783	2369599	.	+	.	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000125;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000125;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000125:6;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2369600	2369656	.	+	.	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000125;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000125;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000125:7;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2369600	2369656	.	+	2	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000125;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000125;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000125:7;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2369657	2372178	.	+	.	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000125;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000125;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000125:7;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2372179	2372709	.	+	.	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000125;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000125;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000125:8;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2372179	2372204	.	+	2	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000125;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000125;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000125:8;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	2372202	2372204	.	+	0	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000125;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000125;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=stop_codon:HG003_chrY_T0000125;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2322695	2372709	100	+	.	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000126;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_G0000034;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=HG003_chrY_T0000126;Name=CD99
HG003_chrY	CAT	exon	2322695	2322827	.	+	.	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000126;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000126;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000126:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2322761	2322827	.	+	0	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000126;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000126;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000126:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2322761	2322763	.	+	0	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000126;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000126;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=start_codon:HG003_chrY_T0000126;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2322828	2345827	.	+	.	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000126;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000126;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000126:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2345828	2345860	.	+	.	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000126;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000126;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000126:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2345828	2345860	.	+	2	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000126;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000126;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000126:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2345861	2349014	.	+	.	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000126;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000126;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000126:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2349015	2349062	.	+	.	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000126;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000126;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000126:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2349015	2349062	.	+	2	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000126;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000126;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000126:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2349063	2351068	.	+	.	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000126;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000126;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000126:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2351069	2351113	.	+	.	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000126;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000126;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000126:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2351069	2351113	.	+	2	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000126;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000126;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000126:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2351114	2351763	.	+	.	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000126;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000126;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000126:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2351764	2351832	.	+	.	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000126;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000126;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000126:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2351764	2351832	.	+	2	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000126;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000126;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000126:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2351833	2354035	.	+	.	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000126;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000126;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000126:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2354036	2354083	.	+	.	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000126;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000126;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000126:5;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2354036	2354083	.	+	2	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000126;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000126;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000126:5;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2354084	2354722	.	+	.	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000126;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000126;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000126:5;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2354723	2354773	.	+	.	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000126;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000126;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000126:6;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2354723	2354773	.	+	2	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000126;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000126;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000126:6;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2354774	2357668	.	+	.	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000126;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000126;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000126:6;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2357669	2357782	.	+	.	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000126;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000126;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000126:7;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2357669	2357782	.	+	2	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000126;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000126;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000126:7;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2357783	2369599	.	+	.	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000126;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000126;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000126:7;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2369600	2369656	.	+	.	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000126;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000126;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000126:8;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2369600	2369656	.	+	2	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000126;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000126;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000126:8;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2369657	2372178	.	+	.	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000126;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000126;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:HG003_chrY_T0000126:8;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2372179	2372709	.	+	.	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000126;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000126;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:HG003_chrY_T0000126:9;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2372179	2372204	.	+	2	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000126;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000126;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:HG003_chrY_T0000126:9;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	2372202	2372204	.	+	0	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000126;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000126;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=stop_codon:HG003_chrY_T0000126;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2322695	2372709	1000	+	.	source_transcript=hg002_chrY_paternal_40.7;source_transcript_name=hg002_chrY_paternal_40.1;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_40.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.7;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.7,hg002_chrY_paternal_40.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000127;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_G0000034;transcript_name=hg002_chrY_paternal_40.1;gene_name=CD99;ID=HG003_chrY_T0000127;Name=CD99
HG003_chrY	CAT	exon	2322695	2322827	.	+	.	source_transcript=hg002_chrY_paternal_40.7;source_transcript_name=hg002_chrY_paternal_40.1;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_40.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.7,hg002_chrY_paternal_40.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000127;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000127;transcript_name=hg002_chrY_paternal_40.1;gene_name=CD99;ID=exon:HG003_chrY_T0000127:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2322828	2345827	.	+	.	source_transcript=hg002_chrY_paternal_40.7;source_transcript_name=hg002_chrY_paternal_40.1;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_40.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.7,hg002_chrY_paternal_40.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000127;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000127;transcript_name=hg002_chrY_paternal_40.1;gene_name=CD99;ID=intron:HG003_chrY_T0000127:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2345828	2345860	.	+	.	source_transcript=hg002_chrY_paternal_40.7;source_transcript_name=hg002_chrY_paternal_40.1;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_40.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.7,hg002_chrY_paternal_40.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000127;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000127;transcript_name=hg002_chrY_paternal_40.1;gene_name=CD99;ID=exon:HG003_chrY_T0000127:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2345861	2349014	.	+	.	source_transcript=hg002_chrY_paternal_40.7;source_transcript_name=hg002_chrY_paternal_40.1;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_40.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.7,hg002_chrY_paternal_40.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000127;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000127;transcript_name=hg002_chrY_paternal_40.1;gene_name=CD99;ID=intron:HG003_chrY_T0000127:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2349015	2349062	.	+	.	source_transcript=hg002_chrY_paternal_40.7;source_transcript_name=hg002_chrY_paternal_40.1;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_40.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.7,hg002_chrY_paternal_40.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000127;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000127;transcript_name=hg002_chrY_paternal_40.1;gene_name=CD99;ID=exon:HG003_chrY_T0000127:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2349063	2351068	.	+	.	source_transcript=hg002_chrY_paternal_40.7;source_transcript_name=hg002_chrY_paternal_40.1;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_40.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.7,hg002_chrY_paternal_40.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000127;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000127;transcript_name=hg002_chrY_paternal_40.1;gene_name=CD99;ID=intron:HG003_chrY_T0000127:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2351069	2351113	.	+	.	source_transcript=hg002_chrY_paternal_40.7;source_transcript_name=hg002_chrY_paternal_40.1;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_40.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.7,hg002_chrY_paternal_40.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000127;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000127;transcript_name=hg002_chrY_paternal_40.1;gene_name=CD99;ID=exon:HG003_chrY_T0000127:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2351114	2351763	.	+	.	source_transcript=hg002_chrY_paternal_40.7;source_transcript_name=hg002_chrY_paternal_40.1;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_40.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.7,hg002_chrY_paternal_40.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000127;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000127;transcript_name=hg002_chrY_paternal_40.1;gene_name=CD99;ID=intron:HG003_chrY_T0000127:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2351764	2351832	.	+	.	source_transcript=hg002_chrY_paternal_40.7;source_transcript_name=hg002_chrY_paternal_40.1;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_40.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.7,hg002_chrY_paternal_40.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000127;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000127;transcript_name=hg002_chrY_paternal_40.1;gene_name=CD99;ID=exon:HG003_chrY_T0000127:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2351833	2354035	.	+	.	source_transcript=hg002_chrY_paternal_40.7;source_transcript_name=hg002_chrY_paternal_40.1;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_40.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.7,hg002_chrY_paternal_40.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000127;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000127;transcript_name=hg002_chrY_paternal_40.1;gene_name=CD99;ID=intron:HG003_chrY_T0000127:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2354036	2354083	.	+	.	source_transcript=hg002_chrY_paternal_40.7;source_transcript_name=hg002_chrY_paternal_40.1;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_40.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.7,hg002_chrY_paternal_40.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000127;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000127;transcript_name=hg002_chrY_paternal_40.1;gene_name=CD99;ID=exon:HG003_chrY_T0000127:5;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2354084	2354722	.	+	.	source_transcript=hg002_chrY_paternal_40.7;source_transcript_name=hg002_chrY_paternal_40.1;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_40.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.7,hg002_chrY_paternal_40.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000127;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000127;transcript_name=hg002_chrY_paternal_40.1;gene_name=CD99;ID=intron:HG003_chrY_T0000127:5;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2354723	2354773	.	+	.	source_transcript=hg002_chrY_paternal_40.7;source_transcript_name=hg002_chrY_paternal_40.1;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_40.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.7,hg002_chrY_paternal_40.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000127;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000127;transcript_name=hg002_chrY_paternal_40.1;gene_name=CD99;ID=exon:HG003_chrY_T0000127:6;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2354774	2357668	.	+	.	source_transcript=hg002_chrY_paternal_40.7;source_transcript_name=hg002_chrY_paternal_40.1;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_40.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.7,hg002_chrY_paternal_40.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000127;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000127;transcript_name=hg002_chrY_paternal_40.1;gene_name=CD99;ID=intron:HG003_chrY_T0000127:6;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2357669	2357782	.	+	.	source_transcript=hg002_chrY_paternal_40.7;source_transcript_name=hg002_chrY_paternal_40.1;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_40.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.7,hg002_chrY_paternal_40.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000127;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000127;transcript_name=hg002_chrY_paternal_40.1;gene_name=CD99;ID=exon:HG003_chrY_T0000127:7;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2357783	2364759	.	+	.	source_transcript=hg002_chrY_paternal_40.7;source_transcript_name=hg002_chrY_paternal_40.1;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_40.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.7,hg002_chrY_paternal_40.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000127;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000127;transcript_name=hg002_chrY_paternal_40.1;gene_name=CD99;ID=intron:HG003_chrY_T0000127:7;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2364760	2364777	.	+	.	source_transcript=hg002_chrY_paternal_40.7;source_transcript_name=hg002_chrY_paternal_40.1;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_40.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.7,hg002_chrY_paternal_40.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000127;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000127;transcript_name=hg002_chrY_paternal_40.1;gene_name=CD99;ID=exon:HG003_chrY_T0000127:8;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2364778	2369602	.	+	.	source_transcript=hg002_chrY_paternal_40.7;source_transcript_name=hg002_chrY_paternal_40.1;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_40.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.7,hg002_chrY_paternal_40.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000127;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000127;transcript_name=hg002_chrY_paternal_40.1;gene_name=CD99;ID=intron:HG003_chrY_T0000127:8;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2369603	2369656	.	+	.	source_transcript=hg002_chrY_paternal_40.7;source_transcript_name=hg002_chrY_paternal_40.1;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_40.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.7,hg002_chrY_paternal_40.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000127;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000127;transcript_name=hg002_chrY_paternal_40.1;gene_name=CD99;ID=exon:HG003_chrY_T0000127:9;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2369657	2372178	.	+	.	source_transcript=hg002_chrY_paternal_40.7;source_transcript_name=hg002_chrY_paternal_40.1;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_40.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.7,hg002_chrY_paternal_40.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000127;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000127;transcript_name=hg002_chrY_paternal_40.1;gene_name=CD99;ID=intron:HG003_chrY_T0000127:9;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2372179	2372709	.	+	.	source_transcript=hg002_chrY_paternal_40.7;source_transcript_name=hg002_chrY_paternal_40.1;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_40.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.7,hg002_chrY_paternal_40.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000127;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000127;transcript_name=hg002_chrY_paternal_40.1;gene_name=CD99;ID=exon:HG003_chrY_T0000127:10;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	2383737	2406278	.	+	.	source_gene_common_name=XGY2;source_gene=hg002_chrY_paternal_41;alternative_source_transcripts=hg002_chrY_paternal_41.1,hg002_chrY_paternal_41.1;gene_id=HG003_chrY_G0000035;gene_biotype=transcribed_pseudogene;gene_name=XGY2;gene_sources=liftoff;ID=HG003_chrY_G0000035;Name=XGY2
HG003_chrY	CAT	transcript	2383737	2406278	1000	+	.	source_transcript=hg002_chrY_paternal_41.1;source_transcript_name=hg002_chrY_paternal_41.1;source_gene=hg002_chrY_paternal_41;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_41;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_41.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_41.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;alternative_source_transcripts=hg002_chrY_paternal_41.1,hg002_chrY_paternal_41.1;transcript_id=HG003_chrY_T0000128;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_G0000035;transcript_name=hg002_chrY_paternal_41.1;gene_name=XGY2;ID=HG003_chrY_T0000128;Name=XGY2
HG003_chrY	CAT	exon	2383737	2383776	.	+	.	source_transcript=hg002_chrY_paternal_41.1;source_transcript_name=hg002_chrY_paternal_41.1;source_gene=hg002_chrY_paternal_41;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_41;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_41.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_41.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;alternative_source_transcripts=hg002_chrY_paternal_41.1,hg002_chrY_paternal_41.1;transcript_id=HG003_chrY_T0000128;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000128;transcript_name=hg002_chrY_paternal_41.1;gene_name=XGY2;ID=exon:HG003_chrY_T0000128:0;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2383777	2401975	.	+	.	source_transcript=hg002_chrY_paternal_41.1;source_transcript_name=hg002_chrY_paternal_41.1;source_gene=hg002_chrY_paternal_41;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_41;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_41.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_41.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;alternative_source_transcripts=hg002_chrY_paternal_41.1,hg002_chrY_paternal_41.1;transcript_id=HG003_chrY_T0000128;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000128;transcript_name=hg002_chrY_paternal_41.1;gene_name=XGY2;ID=intron:HG003_chrY_T0000128:0;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2401976	2402017	.	+	.	source_transcript=hg002_chrY_paternal_41.1;source_transcript_name=hg002_chrY_paternal_41.1;source_gene=hg002_chrY_paternal_41;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_41;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_41.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_41.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;alternative_source_transcripts=hg002_chrY_paternal_41.1,hg002_chrY_paternal_41.1;transcript_id=HG003_chrY_T0000128;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000128;transcript_name=hg002_chrY_paternal_41.1;gene_name=XGY2;ID=exon:HG003_chrY_T0000128:1;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2402018	2405997	.	+	.	source_transcript=hg002_chrY_paternal_41.1;source_transcript_name=hg002_chrY_paternal_41.1;source_gene=hg002_chrY_paternal_41;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_41;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_41.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_41.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;alternative_source_transcripts=hg002_chrY_paternal_41.1,hg002_chrY_paternal_41.1;transcript_id=HG003_chrY_T0000128;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000128;transcript_name=hg002_chrY_paternal_41.1;gene_name=XGY2;ID=intron:HG003_chrY_T0000128:1;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2405998	2406278	.	+	.	source_transcript=hg002_chrY_paternal_41.1;source_transcript_name=hg002_chrY_paternal_41.1;source_gene=hg002_chrY_paternal_41;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_41;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_41.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_41.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;alternative_source_transcripts=hg002_chrY_paternal_41.1,hg002_chrY_paternal_41.1;transcript_id=HG003_chrY_T0000128;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000128;transcript_name=hg002_chrY_paternal_41.1;gene_name=XGY2;ID=exon:HG003_chrY_T0000128:2;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	2418134	2418961	.	-	.	source_gene_common_name=SRY;source_gene=hg002_chrY_paternal_43;alternative_source_transcripts=hg002_chrY_paternal_43.1,hg002_chrY_paternal_43.1;gene_id=HG003_chrY_G0000036;gene_biotype=protein_coding;gene_name=SRY;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000036;Name=SRY
HG003_chrY	CAT	transcript	2418134	2418961	100	-	.	source_transcript=hg002_chrY_paternal_43.1;source_transcript_name=hg002_chrY_paternal_43.1;source_gene=hg002_chrY_paternal_43;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_43;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_43.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_43.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SRY;alternative_source_transcripts=hg002_chrY_paternal_43.1,hg002_chrY_paternal_43.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000129;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_G0000036;transcript_name=hg002_chrY_paternal_43.1;gene_name=SRY;ID=HG003_chrY_T0000129;Name=SRY
HG003_chrY	CAT	exon	2418134	2418961	.	-	.	source_transcript=hg002_chrY_paternal_43.1;source_transcript_name=hg002_chrY_paternal_43.1;source_gene=hg002_chrY_paternal_43;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_43;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_43.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_43.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SRY;alternative_source_transcripts=hg002_chrY_paternal_43.1,hg002_chrY_paternal_43.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000129;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000129;transcript_name=hg002_chrY_paternal_43.1;gene_name=SRY;ID=exon:HG003_chrY_T0000129:0;Name=SRY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2418268	2418882	.	-	0	source_transcript=hg002_chrY_paternal_43.1;source_transcript_name=hg002_chrY_paternal_43.1;source_gene=hg002_chrY_paternal_43;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_43;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_43.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_43.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SRY;alternative_source_transcripts=hg002_chrY_paternal_43.1,hg002_chrY_paternal_43.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000129;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000129;transcript_name=hg002_chrY_paternal_43.1;gene_name=SRY;ID=CDS:HG003_chrY_T0000129:0;Name=SRY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	2418268	2418270	.	-	0	source_transcript=hg002_chrY_paternal_43.1;source_transcript_name=hg002_chrY_paternal_43.1;source_gene=hg002_chrY_paternal_43;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_43;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_43.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_43.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SRY;alternative_source_transcripts=hg002_chrY_paternal_43.1,hg002_chrY_paternal_43.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000129;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000129;transcript_name=hg002_chrY_paternal_43.1;gene_name=SRY;ID=stop_codon:HG003_chrY_T0000129;Name=SRY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2418880	2418882	.	-	0	source_transcript=hg002_chrY_paternal_43.1;source_transcript_name=hg002_chrY_paternal_43.1;source_gene=hg002_chrY_paternal_43;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_43;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_43.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_43.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SRY;alternative_source_transcripts=hg002_chrY_paternal_43.1,hg002_chrY_paternal_43.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000129;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000129;transcript_name=hg002_chrY_paternal_43.1;gene_name=SRY;ID=start_codon:HG003_chrY_T0000129;Name=SRY;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	2472872	2498539	.	+	.	source_gene_common_name=RPS4Y1;source_gene=hg002_chrY_paternal_46;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;gene_id=HG003_chrY_G0000037;gene_biotype=protein_coding;gene_name=RPS4Y1;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000037;Name=RPS4Y1
HG003_chrY	CAT	transcript	2472872	2498539	100	+	.	source_transcript=hg002_chrY_paternal_46.1;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000130;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_G0000037;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=HG003_chrY_T0000130;Name=RPS4Y1
HG003_chrY	CAT	exon	2472872	2472897	.	+	.	source_transcript=hg002_chrY_paternal_46.1;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000130;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000130;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=exon:HG003_chrY_T0000130:0;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2472895	2472897	.	+	0	source_transcript=hg002_chrY_paternal_46.1;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000130;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000130;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=CDS:HG003_chrY_T0000130:0;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2472895	2472897	.	+	0	source_transcript=hg002_chrY_paternal_46.1;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000130;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000130;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=start_codon:HG003_chrY_T0000130;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2472898	2473434	.	+	.	source_transcript=hg002_chrY_paternal_46.1;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000130;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000130;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=intron:HG003_chrY_T0000130:0;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2473435	2473512	.	+	.	source_transcript=hg002_chrY_paternal_46.1;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000130;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000130;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=exon:HG003_chrY_T0000130:1;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2473435	2473512	.	+	0	source_transcript=hg002_chrY_paternal_46.1;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000130;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000130;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=CDS:HG003_chrY_T0000130:1;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2473513	2475346	.	+	.	source_transcript=hg002_chrY_paternal_46.1;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000130;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000130;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=intron:HG003_chrY_T0000130:1;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2475347	2475527	.	+	.	source_transcript=hg002_chrY_paternal_46.1;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000130;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000130;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=exon:HG003_chrY_T0000130:2;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2475347	2475527	.	+	0	source_transcript=hg002_chrY_paternal_46.1;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000130;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000130;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=CDS:HG003_chrY_T0000130:2;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2475528	2476915	.	+	.	source_transcript=hg002_chrY_paternal_46.1;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000130;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000130;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=intron:HG003_chrY_T0000130:2;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2476916	2477013	.	+	.	source_transcript=hg002_chrY_paternal_46.1;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000130;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000130;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=exon:HG003_chrY_T0000130:3;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2476916	2477013	.	+	2	source_transcript=hg002_chrY_paternal_46.1;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000130;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000130;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=CDS:HG003_chrY_T0000130:3;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2477014	2485870	.	+	.	source_transcript=hg002_chrY_paternal_46.1;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000130;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000130;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=intron:HG003_chrY_T0000130:3;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2485871	2486042	.	+	.	source_transcript=hg002_chrY_paternal_46.1;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000130;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000130;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=exon:HG003_chrY_T0000130:4;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2485871	2486042	.	+	0	source_transcript=hg002_chrY_paternal_46.1;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000130;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000130;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=CDS:HG003_chrY_T0000130:4;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2486043	2496358	.	+	.	source_transcript=hg002_chrY_paternal_46.1;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000130;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000130;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=intron:HG003_chrY_T0000130:4;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2496359	2496516	.	+	.	source_transcript=hg002_chrY_paternal_46.1;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000130;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000130;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=exon:HG003_chrY_T0000130:5;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2496359	2496516	.	+	2	source_transcript=hg002_chrY_paternal_46.1;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000130;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000130;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=CDS:HG003_chrY_T0000130:5;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2496517	2498063	.	+	.	source_transcript=hg002_chrY_paternal_46.1;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000130;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000130;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=intron:HG003_chrY_T0000130:5;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2498064	2498539	.	+	.	source_transcript=hg002_chrY_paternal_46.1;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000130;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000130;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=exon:HG003_chrY_T0000130:6;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2498064	2498165	.	+	0	source_transcript=hg002_chrY_paternal_46.1;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000130;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000130;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=CDS:HG003_chrY_T0000130:6;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	2498163	2498165	.	+	0	source_transcript=hg002_chrY_paternal_46.1;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000130;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000130;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=stop_codon:HG003_chrY_T0000130;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2472872	2498539	100	+	.	source_transcript=hg002_chrY_paternal_46.2;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.2,hg002_chrY_paternal_46.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000131;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_G0000037;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=HG003_chrY_T0000131;Name=RPS4Y1
HG003_chrY	CAT	exon	2472872	2473243	.	+	.	source_transcript=hg002_chrY_paternal_46.2;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.2,hg002_chrY_paternal_46.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000131;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000131;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=exon:HG003_chrY_T0000131:0;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2473214	2473243	.	+	0	source_transcript=hg002_chrY_paternal_46.2;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.2,hg002_chrY_paternal_46.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000131;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000131;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=CDS:HG003_chrY_T0000131:0;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2473214	2473216	.	+	0	source_transcript=hg002_chrY_paternal_46.2;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.2,hg002_chrY_paternal_46.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000131;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000131;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=start_codon:HG003_chrY_T0000131;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2473244	2473434	.	+	.	source_transcript=hg002_chrY_paternal_46.2;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.2,hg002_chrY_paternal_46.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000131;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000131;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=intron:HG003_chrY_T0000131:0;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2473435	2473512	.	+	.	source_transcript=hg002_chrY_paternal_46.2;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.2,hg002_chrY_paternal_46.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000131;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000131;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=exon:HG003_chrY_T0000131:1;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2473435	2473512	.	+	0	source_transcript=hg002_chrY_paternal_46.2;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.2,hg002_chrY_paternal_46.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000131;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000131;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=CDS:HG003_chrY_T0000131:1;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2473513	2475346	.	+	.	source_transcript=hg002_chrY_paternal_46.2;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.2,hg002_chrY_paternal_46.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000131;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000131;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=intron:HG003_chrY_T0000131:1;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2475347	2475527	.	+	.	source_transcript=hg002_chrY_paternal_46.2;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.2,hg002_chrY_paternal_46.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000131;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000131;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=exon:HG003_chrY_T0000131:2;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2475347	2475527	.	+	0	source_transcript=hg002_chrY_paternal_46.2;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.2,hg002_chrY_paternal_46.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000131;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000131;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=CDS:HG003_chrY_T0000131:2;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2475528	2476915	.	+	.	source_transcript=hg002_chrY_paternal_46.2;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.2,hg002_chrY_paternal_46.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000131;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000131;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=intron:HG003_chrY_T0000131:2;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2476916	2477013	.	+	.	source_transcript=hg002_chrY_paternal_46.2;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.2,hg002_chrY_paternal_46.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000131;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000131;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=exon:HG003_chrY_T0000131:3;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2476916	2477013	.	+	2	source_transcript=hg002_chrY_paternal_46.2;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.2,hg002_chrY_paternal_46.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000131;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000131;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=CDS:HG003_chrY_T0000131:3;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2477014	2485870	.	+	.	source_transcript=hg002_chrY_paternal_46.2;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.2,hg002_chrY_paternal_46.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000131;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000131;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=intron:HG003_chrY_T0000131:3;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2485871	2486042	.	+	.	source_transcript=hg002_chrY_paternal_46.2;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.2,hg002_chrY_paternal_46.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000131;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000131;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=exon:HG003_chrY_T0000131:4;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2485871	2486042	.	+	0	source_transcript=hg002_chrY_paternal_46.2;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.2,hg002_chrY_paternal_46.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000131;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000131;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=CDS:HG003_chrY_T0000131:4;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2486043	2496358	.	+	.	source_transcript=hg002_chrY_paternal_46.2;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.2,hg002_chrY_paternal_46.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000131;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000131;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=intron:HG003_chrY_T0000131:4;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2496359	2496516	.	+	.	source_transcript=hg002_chrY_paternal_46.2;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.2,hg002_chrY_paternal_46.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000131;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000131;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=exon:HG003_chrY_T0000131:5;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2496359	2496516	.	+	2	source_transcript=hg002_chrY_paternal_46.2;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.2,hg002_chrY_paternal_46.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000131;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000131;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=CDS:HG003_chrY_T0000131:5;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2496517	2498063	.	+	.	source_transcript=hg002_chrY_paternal_46.2;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.2,hg002_chrY_paternal_46.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000131;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000131;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=intron:HG003_chrY_T0000131:5;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2498064	2498539	.	+	.	source_transcript=hg002_chrY_paternal_46.2;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.2,hg002_chrY_paternal_46.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000131;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000131;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=exon:HG003_chrY_T0000131:6;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2498064	2498165	.	+	0	source_transcript=hg002_chrY_paternal_46.2;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.2,hg002_chrY_paternal_46.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000131;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000131;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=CDS:HG003_chrY_T0000131:6;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	2498163	2498165	.	+	0	source_transcript=hg002_chrY_paternal_46.2;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.2,hg002_chrY_paternal_46.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000131;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000131;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=stop_codon:HG003_chrY_T0000131;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	2567001	2614104	.	+	.	source_gene_common_name=ZFY;source_gene=hg002_chrY_paternal_49;alternative_source_transcripts=hg002_chrY_paternal_49.1,hg002_chrY_paternal_49.1;gene_id=HG003_chrY_G0000038;gene_biotype=protein_coding;gene_name=ZFY;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000038;Name=ZFY
HG003_chrY	CAT	transcript	2567001	2614104	100	+	.	source_transcript=hg002_chrY_paternal_49.1;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.1,hg002_chrY_paternal_49.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000132;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_G0000038;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=HG003_chrY_T0000132;Name=ZFY
HG003_chrY	CAT	exon	2567001	2567389	.	+	.	source_transcript=hg002_chrY_paternal_49.1;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.1,hg002_chrY_paternal_49.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000132;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000132;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000132:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2567390	2592672	.	+	.	source_transcript=hg002_chrY_paternal_49.1;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.1,hg002_chrY_paternal_49.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000132;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000132;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000132:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2592673	2593245	.	+	.	source_transcript=hg002_chrY_paternal_49.1;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.1,hg002_chrY_paternal_49.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000132;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000132;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000132:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2592690	2593245	.	+	0	source_transcript=hg002_chrY_paternal_49.1;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.1,hg002_chrY_paternal_49.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000132;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000132;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000132:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2592690	2592692	.	+	0	source_transcript=hg002_chrY_paternal_49.1;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.1,hg002_chrY_paternal_49.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000132;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000132;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=start_codon:HG003_chrY_T0000132;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2593246	2606693	.	+	.	source_transcript=hg002_chrY_paternal_49.1;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.1,hg002_chrY_paternal_49.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000132;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000132;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000132:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2606694	2606843	.	+	.	source_transcript=hg002_chrY_paternal_49.1;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.1,hg002_chrY_paternal_49.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000132;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000132;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000132:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2606694	2606843	.	+	2	source_transcript=hg002_chrY_paternal_49.1;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.1,hg002_chrY_paternal_49.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000132;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000132;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000132:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2606844	2607109	.	+	.	source_transcript=hg002_chrY_paternal_49.1;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.1,hg002_chrY_paternal_49.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000132;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000132;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000132:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2607110	2607253	.	+	.	source_transcript=hg002_chrY_paternal_49.1;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.1,hg002_chrY_paternal_49.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000132;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000132;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000132:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2607110	2607253	.	+	2	source_transcript=hg002_chrY_paternal_49.1;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.1,hg002_chrY_paternal_49.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000132;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000132;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000132:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2607254	2609537	.	+	.	source_transcript=hg002_chrY_paternal_49.1;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.1,hg002_chrY_paternal_49.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000132;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000132;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000132:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2609538	2609678	.	+	.	source_transcript=hg002_chrY_paternal_49.1;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.1,hg002_chrY_paternal_49.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000132;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000132;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000132:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2609538	2609678	.	+	2	source_transcript=hg002_chrY_paternal_49.1;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.1,hg002_chrY_paternal_49.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000132;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000132;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000132:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2609679	2610407	.	+	.	source_transcript=hg002_chrY_paternal_49.1;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.1,hg002_chrY_paternal_49.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000132;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000132;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000132:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2610408	2614104	.	+	.	source_transcript=hg002_chrY_paternal_49.1;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.1,hg002_chrY_paternal_49.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000132;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000132;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000132:5;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2610408	2611591	.	+	2	source_transcript=hg002_chrY_paternal_49.1;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.1,hg002_chrY_paternal_49.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000132;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000132;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000132:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	2611589	2611591	.	+	0	source_transcript=hg002_chrY_paternal_49.1;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.1,hg002_chrY_paternal_49.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000132;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000132;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=stop_codon:HG003_chrY_T0000132;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2567001	2614104	100	+	.	source_transcript=hg002_chrY_paternal_49.10;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.10;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.10,hg002_chrY_paternal_49.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_G0000038;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=HG003_chrY_T0000133;Name=ZFY
HG003_chrY	CAT	exon	2567001	2567066	.	+	.	source_transcript=hg002_chrY_paternal_49.10;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.10,hg002_chrY_paternal_49.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000133;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000133:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2567067	2585508	.	+	.	source_transcript=hg002_chrY_paternal_49.10;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.10,hg002_chrY_paternal_49.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000133;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000133:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2585509	2585597	.	+	.	source_transcript=hg002_chrY_paternal_49.10;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.10,hg002_chrY_paternal_49.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000133;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000133:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2585537	2585597	.	+	0	source_transcript=hg002_chrY_paternal_49.10;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.10,hg002_chrY_paternal_49.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000133;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000133:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2585537	2585539	.	+	0	source_transcript=hg002_chrY_paternal_49.10;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.10,hg002_chrY_paternal_49.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000133;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=start_codon:HG003_chrY_T0000133;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2585598	2606693	.	+	.	source_transcript=hg002_chrY_paternal_49.10;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.10,hg002_chrY_paternal_49.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000133;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000133:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2606694	2606843	.	+	.	source_transcript=hg002_chrY_paternal_49.10;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.10,hg002_chrY_paternal_49.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000133;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000133:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2606694	2606843	.	+	2	source_transcript=hg002_chrY_paternal_49.10;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.10,hg002_chrY_paternal_49.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000133;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000133:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2606844	2607109	.	+	.	source_transcript=hg002_chrY_paternal_49.10;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.10,hg002_chrY_paternal_49.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000133;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000133:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2607110	2607253	.	+	.	source_transcript=hg002_chrY_paternal_49.10;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.10,hg002_chrY_paternal_49.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000133;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000133:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2607110	2607253	.	+	2	source_transcript=hg002_chrY_paternal_49.10;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.10,hg002_chrY_paternal_49.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000133;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000133:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2607254	2608268	.	+	.	source_transcript=hg002_chrY_paternal_49.10;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.10,hg002_chrY_paternal_49.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000133;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000133:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2608269	2608421	.	+	.	source_transcript=hg002_chrY_paternal_49.10;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.10,hg002_chrY_paternal_49.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000133;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000133:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2608269	2608421	.	+	2	source_transcript=hg002_chrY_paternal_49.10;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.10,hg002_chrY_paternal_49.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000133;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000133:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2608422	2609537	.	+	.	source_transcript=hg002_chrY_paternal_49.10;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.10,hg002_chrY_paternal_49.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000133;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000133:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2609538	2609678	.	+	.	source_transcript=hg002_chrY_paternal_49.10;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.10,hg002_chrY_paternal_49.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000133;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000133:5;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2609538	2609678	.	+	2	source_transcript=hg002_chrY_paternal_49.10;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.10,hg002_chrY_paternal_49.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000133;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000133:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2609679	2610407	.	+	.	source_transcript=hg002_chrY_paternal_49.10;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.10,hg002_chrY_paternal_49.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000133;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000133:5;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2610408	2614104	.	+	.	source_transcript=hg002_chrY_paternal_49.10;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.10,hg002_chrY_paternal_49.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000133;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000133:6;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2610408	2611591	.	+	2	source_transcript=hg002_chrY_paternal_49.10;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.10,hg002_chrY_paternal_49.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000133;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000133:5;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	2611589	2611591	.	+	0	source_transcript=hg002_chrY_paternal_49.10;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.10,hg002_chrY_paternal_49.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000133;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=stop_codon:HG003_chrY_T0000133;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2567001	2614104	100	+	.	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_G0000038;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=HG003_chrY_T0000134;Name=ZFY
HG003_chrY	CAT	exon	2567001	2567066	.	+	.	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000134;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000134:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2567067	2585508	.	+	.	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000134;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000134:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2585509	2585597	.	+	.	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000134;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000134:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2585537	2585597	.	+	0	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000134;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000134:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2585537	2585539	.	+	0	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000134;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=start_codon:HG003_chrY_T0000134;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2585598	2592672	.	+	.	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000134;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000134:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2592673	2593245	.	+	.	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000134;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000134:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2592673	2593245	.	+	2	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000134;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000134:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2593246	2606693	.	+	.	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000134;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000134:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2606694	2606843	.	+	.	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000134;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000134:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2606694	2606843	.	+	2	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000134;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000134:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2606844	2607109	.	+	.	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000134;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000134:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2607110	2607253	.	+	.	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000134;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000134:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2607110	2607253	.	+	2	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000134;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000134:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2607254	2608268	.	+	.	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000134;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000134:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2608269	2608421	.	+	.	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000134;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000134:5;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2608269	2608421	.	+	2	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000134;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000134:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2608422	2609537	.	+	.	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000134;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000134:5;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2609538	2609678	.	+	.	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000134;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000134:6;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2609538	2609678	.	+	2	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000134;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000134:5;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2609679	2610407	.	+	.	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000134;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000134:6;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2610408	2614104	.	+	.	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000134;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000134:7;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2610408	2611591	.	+	2	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000134;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000134:6;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	2611589	2611591	.	+	0	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000134;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=stop_codon:HG003_chrY_T0000134;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2567001	2614104	100	+	.	source_transcript=hg002_chrY_paternal_49.12;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.12;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.12,hg002_chrY_paternal_49.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000135;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_G0000038;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=HG003_chrY_T0000135;Name=ZFY
HG003_chrY	CAT	exon	2567001	2567389	.	+	.	source_transcript=hg002_chrY_paternal_49.12;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.12,hg002_chrY_paternal_49.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000135;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000135;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000135:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2567390	2592672	.	+	.	source_transcript=hg002_chrY_paternal_49.12;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.12,hg002_chrY_paternal_49.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000135;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000135;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000135:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2592673	2593245	.	+	.	source_transcript=hg002_chrY_paternal_49.12;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.12,hg002_chrY_paternal_49.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000135;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000135;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000135:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2592690	2593245	.	+	0	source_transcript=hg002_chrY_paternal_49.12;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.12,hg002_chrY_paternal_49.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000135;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000135;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000135:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2592690	2592692	.	+	0	source_transcript=hg002_chrY_paternal_49.12;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.12,hg002_chrY_paternal_49.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000135;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000135;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=start_codon:HG003_chrY_T0000135;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2593246	2606693	.	+	.	source_transcript=hg002_chrY_paternal_49.12;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.12,hg002_chrY_paternal_49.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000135;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000135;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000135:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2606694	2606843	.	+	.	source_transcript=hg002_chrY_paternal_49.12;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.12,hg002_chrY_paternal_49.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000135;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000135;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000135:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2606694	2606843	.	+	2	source_transcript=hg002_chrY_paternal_49.12;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.12,hg002_chrY_paternal_49.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000135;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000135;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000135:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2606844	2607109	.	+	.	source_transcript=hg002_chrY_paternal_49.12;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.12,hg002_chrY_paternal_49.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000135;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000135;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000135:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2607110	2607253	.	+	.	source_transcript=hg002_chrY_paternal_49.12;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.12,hg002_chrY_paternal_49.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000135;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000135;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000135:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2607110	2607253	.	+	2	source_transcript=hg002_chrY_paternal_49.12;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.12,hg002_chrY_paternal_49.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000135;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000135;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000135:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2607254	2608268	.	+	.	source_transcript=hg002_chrY_paternal_49.12;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.12,hg002_chrY_paternal_49.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000135;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000135;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000135:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2608269	2608421	.	+	.	source_transcript=hg002_chrY_paternal_49.12;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.12,hg002_chrY_paternal_49.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000135;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000135;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000135:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2608269	2608421	.	+	2	source_transcript=hg002_chrY_paternal_49.12;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.12,hg002_chrY_paternal_49.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000135;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000135;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000135:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2608422	2609537	.	+	.	source_transcript=hg002_chrY_paternal_49.12;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.12,hg002_chrY_paternal_49.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000135;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000135;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000135:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2609538	2609678	.	+	.	source_transcript=hg002_chrY_paternal_49.12;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.12,hg002_chrY_paternal_49.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000135;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000135;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000135:5;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2609538	2609678	.	+	2	source_transcript=hg002_chrY_paternal_49.12;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.12,hg002_chrY_paternal_49.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000135;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000135;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000135:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2609679	2610407	.	+	.	source_transcript=hg002_chrY_paternal_49.12;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.12,hg002_chrY_paternal_49.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000135;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000135;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000135:5;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2610408	2614104	.	+	.	source_transcript=hg002_chrY_paternal_49.12;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.12,hg002_chrY_paternal_49.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000135;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000135;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000135:6;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2610408	2611591	.	+	2	source_transcript=hg002_chrY_paternal_49.12;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.12,hg002_chrY_paternal_49.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000135;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000135;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000135:5;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	2611589	2611591	.	+	0	source_transcript=hg002_chrY_paternal_49.12;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.12,hg002_chrY_paternal_49.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000135;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000135;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=stop_codon:HG003_chrY_T0000135;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2567001	2614104	100	+	.	source_transcript=hg002_chrY_paternal_49.13;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.13;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.13,hg002_chrY_paternal_49.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000136;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_G0000038;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=HG003_chrY_T0000136;Name=ZFY
HG003_chrY	CAT	exon	2567001	2567066	.	+	.	source_transcript=hg002_chrY_paternal_49.13;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.13,hg002_chrY_paternal_49.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000136;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000136;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000136:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2567067	2592672	.	+	.	source_transcript=hg002_chrY_paternal_49.13;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.13,hg002_chrY_paternal_49.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000136;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000136;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000136:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2592673	2593245	.	+	.	source_transcript=hg002_chrY_paternal_49.13;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.13,hg002_chrY_paternal_49.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000136;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000136;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000136:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2592690	2593245	.	+	0	source_transcript=hg002_chrY_paternal_49.13;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.13,hg002_chrY_paternal_49.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000136;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000136;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000136:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2592690	2592692	.	+	0	source_transcript=hg002_chrY_paternal_49.13;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.13,hg002_chrY_paternal_49.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000136;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000136;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=start_codon:HG003_chrY_T0000136;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2593246	2606693	.	+	.	source_transcript=hg002_chrY_paternal_49.13;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.13,hg002_chrY_paternal_49.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000136;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000136;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000136:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2606694	2606843	.	+	.	source_transcript=hg002_chrY_paternal_49.13;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.13,hg002_chrY_paternal_49.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000136;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000136;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000136:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2606694	2606843	.	+	2	source_transcript=hg002_chrY_paternal_49.13;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.13,hg002_chrY_paternal_49.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000136;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000136;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000136:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2606844	2607109	.	+	.	source_transcript=hg002_chrY_paternal_49.13;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.13,hg002_chrY_paternal_49.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000136;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000136;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000136:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2607110	2607253	.	+	.	source_transcript=hg002_chrY_paternal_49.13;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.13,hg002_chrY_paternal_49.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000136;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000136;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000136:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2607110	2607253	.	+	2	source_transcript=hg002_chrY_paternal_49.13;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.13,hg002_chrY_paternal_49.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000136;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000136;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000136:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2607254	2608268	.	+	.	source_transcript=hg002_chrY_paternal_49.13;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.13,hg002_chrY_paternal_49.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000136;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000136;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000136:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2608269	2608421	.	+	.	source_transcript=hg002_chrY_paternal_49.13;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.13,hg002_chrY_paternal_49.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000136;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000136;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000136:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2608269	2608421	.	+	2	source_transcript=hg002_chrY_paternal_49.13;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.13,hg002_chrY_paternal_49.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000136;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000136;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000136:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2608422	2609537	.	+	.	source_transcript=hg002_chrY_paternal_49.13;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.13,hg002_chrY_paternal_49.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000136;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000136;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000136:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2609538	2609678	.	+	.	source_transcript=hg002_chrY_paternal_49.13;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.13,hg002_chrY_paternal_49.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000136;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000136;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000136:5;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2609538	2609678	.	+	2	source_transcript=hg002_chrY_paternal_49.13;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.13,hg002_chrY_paternal_49.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000136;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000136;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000136:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2609679	2610407	.	+	.	source_transcript=hg002_chrY_paternal_49.13;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.13,hg002_chrY_paternal_49.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000136;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000136;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000136:5;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2610408	2614104	.	+	.	source_transcript=hg002_chrY_paternal_49.13;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.13,hg002_chrY_paternal_49.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000136;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000136;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000136:6;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2610408	2611591	.	+	2	source_transcript=hg002_chrY_paternal_49.13;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.13,hg002_chrY_paternal_49.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000136;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000136;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000136:5;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	2611589	2611591	.	+	0	source_transcript=hg002_chrY_paternal_49.13;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.13,hg002_chrY_paternal_49.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000136;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000136;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=stop_codon:HG003_chrY_T0000136;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2567001	2614104	100	+	.	source_transcript=hg002_chrY_paternal_49.2;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.2,hg002_chrY_paternal_49.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000137;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_G0000038;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=HG003_chrY_T0000137;Name=ZFY
HG003_chrY	CAT	exon	2567001	2567255	.	+	.	source_transcript=hg002_chrY_paternal_49.2;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.2,hg002_chrY_paternal_49.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000137;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000137;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000137:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2567256	2592672	.	+	.	source_transcript=hg002_chrY_paternal_49.2;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.2,hg002_chrY_paternal_49.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000137;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000137;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000137:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2592673	2593245	.	+	.	source_transcript=hg002_chrY_paternal_49.2;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.2,hg002_chrY_paternal_49.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000137;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000137;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000137:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2592690	2593245	.	+	0	source_transcript=hg002_chrY_paternal_49.2;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.2,hg002_chrY_paternal_49.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000137;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000137;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000137:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2592690	2592692	.	+	0	source_transcript=hg002_chrY_paternal_49.2;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.2,hg002_chrY_paternal_49.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000137;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000137;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=start_codon:HG003_chrY_T0000137;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2593246	2606693	.	+	.	source_transcript=hg002_chrY_paternal_49.2;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.2,hg002_chrY_paternal_49.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000137;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000137;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000137:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2606694	2606843	.	+	.	source_transcript=hg002_chrY_paternal_49.2;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.2,hg002_chrY_paternal_49.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000137;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000137;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000137:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2606694	2606843	.	+	2	source_transcript=hg002_chrY_paternal_49.2;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.2,hg002_chrY_paternal_49.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000137;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000137;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000137:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2606844	2607109	.	+	.	source_transcript=hg002_chrY_paternal_49.2;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.2,hg002_chrY_paternal_49.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000137;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000137;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000137:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2607110	2607253	.	+	.	source_transcript=hg002_chrY_paternal_49.2;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.2,hg002_chrY_paternal_49.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000137;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000137;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000137:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2607110	2607253	.	+	2	source_transcript=hg002_chrY_paternal_49.2;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.2,hg002_chrY_paternal_49.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000137;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000137;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000137:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2607254	2608268	.	+	.	source_transcript=hg002_chrY_paternal_49.2;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.2,hg002_chrY_paternal_49.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000137;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000137;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000137:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2608269	2608421	.	+	.	source_transcript=hg002_chrY_paternal_49.2;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.2,hg002_chrY_paternal_49.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000137;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000137;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000137:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2608269	2608421	.	+	2	source_transcript=hg002_chrY_paternal_49.2;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.2,hg002_chrY_paternal_49.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000137;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000137;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000137:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2608422	2609537	.	+	.	source_transcript=hg002_chrY_paternal_49.2;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.2,hg002_chrY_paternal_49.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000137;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000137;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000137:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2609538	2609678	.	+	.	source_transcript=hg002_chrY_paternal_49.2;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.2,hg002_chrY_paternal_49.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000137;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000137;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000137:5;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2609538	2609678	.	+	2	source_transcript=hg002_chrY_paternal_49.2;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.2,hg002_chrY_paternal_49.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000137;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000137;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000137:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2609679	2610407	.	+	.	source_transcript=hg002_chrY_paternal_49.2;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.2,hg002_chrY_paternal_49.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000137;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000137;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000137:5;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2610408	2614104	.	+	.	source_transcript=hg002_chrY_paternal_49.2;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.2,hg002_chrY_paternal_49.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000137;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000137;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000137:6;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2610408	2611591	.	+	2	source_transcript=hg002_chrY_paternal_49.2;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.2,hg002_chrY_paternal_49.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000137;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000137;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000137:5;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	2611589	2611591	.	+	0	source_transcript=hg002_chrY_paternal_49.2;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.2,hg002_chrY_paternal_49.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000137;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000137;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=stop_codon:HG003_chrY_T0000137;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2567001	2614104	100	+	.	source_transcript=hg002_chrY_paternal_49.3;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.3,hg002_chrY_paternal_49.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000138;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_G0000038;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=HG003_chrY_T0000138;Name=ZFY
HG003_chrY	CAT	exon	2567001	2567389	.	+	.	source_transcript=hg002_chrY_paternal_49.3;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.3,hg002_chrY_paternal_49.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000138;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000138;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000138:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2567390	2585508	.	+	.	source_transcript=hg002_chrY_paternal_49.3;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.3,hg002_chrY_paternal_49.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000138;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000138;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000138:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2585509	2585597	.	+	.	source_transcript=hg002_chrY_paternal_49.3;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.3,hg002_chrY_paternal_49.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000138;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000138;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000138:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2585537	2585597	.	+	0	source_transcript=hg002_chrY_paternal_49.3;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.3,hg002_chrY_paternal_49.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000138;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000138;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000138:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2585537	2585539	.	+	0	source_transcript=hg002_chrY_paternal_49.3;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.3,hg002_chrY_paternal_49.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000138;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000138;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=start_codon:HG003_chrY_T0000138;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2585598	2592672	.	+	.	source_transcript=hg002_chrY_paternal_49.3;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.3,hg002_chrY_paternal_49.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000138;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000138;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000138:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2592673	2593245	.	+	.	source_transcript=hg002_chrY_paternal_49.3;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.3,hg002_chrY_paternal_49.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000138;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000138;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000138:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2592673	2593245	.	+	2	source_transcript=hg002_chrY_paternal_49.3;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.3,hg002_chrY_paternal_49.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000138;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000138;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000138:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2593246	2606693	.	+	.	source_transcript=hg002_chrY_paternal_49.3;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.3,hg002_chrY_paternal_49.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000138;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000138;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000138:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2606694	2606843	.	+	.	source_transcript=hg002_chrY_paternal_49.3;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.3,hg002_chrY_paternal_49.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000138;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000138;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000138:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2606694	2606843	.	+	2	source_transcript=hg002_chrY_paternal_49.3;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.3,hg002_chrY_paternal_49.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000138;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000138;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000138:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2606844	2607109	.	+	.	source_transcript=hg002_chrY_paternal_49.3;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.3,hg002_chrY_paternal_49.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000138;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000138;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000138:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2607110	2607253	.	+	.	source_transcript=hg002_chrY_paternal_49.3;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.3,hg002_chrY_paternal_49.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000138;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000138;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000138:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2607110	2607253	.	+	2	source_transcript=hg002_chrY_paternal_49.3;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.3,hg002_chrY_paternal_49.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000138;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000138;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000138:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2607254	2609537	.	+	.	source_transcript=hg002_chrY_paternal_49.3;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.3,hg002_chrY_paternal_49.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000138;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000138;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000138:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2609538	2609678	.	+	.	source_transcript=hg002_chrY_paternal_49.3;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.3,hg002_chrY_paternal_49.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000138;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000138;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000138:5;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2609538	2609678	.	+	2	source_transcript=hg002_chrY_paternal_49.3;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.3,hg002_chrY_paternal_49.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000138;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000138;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000138:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2609679	2610407	.	+	.	source_transcript=hg002_chrY_paternal_49.3;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.3,hg002_chrY_paternal_49.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000138;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000138;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000138:5;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2610408	2614104	.	+	.	source_transcript=hg002_chrY_paternal_49.3;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.3,hg002_chrY_paternal_49.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000138;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000138;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000138:6;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2610408	2611591	.	+	2	source_transcript=hg002_chrY_paternal_49.3;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.3,hg002_chrY_paternal_49.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000138;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000138;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000138:5;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	2611589	2611591	.	+	0	source_transcript=hg002_chrY_paternal_49.3;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.3,hg002_chrY_paternal_49.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000138;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000138;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=stop_codon:HG003_chrY_T0000138;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2567001	2614104	100	+	.	source_transcript=hg002_chrY_paternal_49.4;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.4,hg002_chrY_paternal_49.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000139;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_G0000038;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=HG003_chrY_T0000139;Name=ZFY
HG003_chrY	CAT	exon	2567001	2567066	.	+	.	source_transcript=hg002_chrY_paternal_49.4;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.4,hg002_chrY_paternal_49.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000139;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000139;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000139:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2567067	2585508	.	+	.	source_transcript=hg002_chrY_paternal_49.4;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.4,hg002_chrY_paternal_49.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000139;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000139;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000139:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2585509	2585597	.	+	.	source_transcript=hg002_chrY_paternal_49.4;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.4,hg002_chrY_paternal_49.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000139;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000139;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000139:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2585537	2585597	.	+	0	source_transcript=hg002_chrY_paternal_49.4;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.4,hg002_chrY_paternal_49.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000139;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000139;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000139:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2585537	2585539	.	+	0	source_transcript=hg002_chrY_paternal_49.4;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.4,hg002_chrY_paternal_49.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000139;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000139;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=start_codon:HG003_chrY_T0000139;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2585598	2592672	.	+	.	source_transcript=hg002_chrY_paternal_49.4;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.4,hg002_chrY_paternal_49.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000139;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000139;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000139:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2592673	2593245	.	+	.	source_transcript=hg002_chrY_paternal_49.4;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.4,hg002_chrY_paternal_49.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000139;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000139;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000139:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2592673	2593245	.	+	2	source_transcript=hg002_chrY_paternal_49.4;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.4,hg002_chrY_paternal_49.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000139;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000139;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000139:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2593246	2606693	.	+	.	source_transcript=hg002_chrY_paternal_49.4;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.4,hg002_chrY_paternal_49.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000139;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000139;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000139:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2606694	2606843	.	+	.	source_transcript=hg002_chrY_paternal_49.4;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.4,hg002_chrY_paternal_49.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000139;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000139;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000139:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2606694	2606843	.	+	2	source_transcript=hg002_chrY_paternal_49.4;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.4,hg002_chrY_paternal_49.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000139;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000139;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000139:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2606844	2607109	.	+	.	source_transcript=hg002_chrY_paternal_49.4;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.4,hg002_chrY_paternal_49.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000139;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000139;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000139:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2607110	2607253	.	+	.	source_transcript=hg002_chrY_paternal_49.4;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.4,hg002_chrY_paternal_49.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000139;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000139;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000139:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2607110	2607253	.	+	2	source_transcript=hg002_chrY_paternal_49.4;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.4,hg002_chrY_paternal_49.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000139;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000139;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000139:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2607254	2609537	.	+	.	source_transcript=hg002_chrY_paternal_49.4;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.4,hg002_chrY_paternal_49.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000139;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000139;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000139:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2609538	2609678	.	+	.	source_transcript=hg002_chrY_paternal_49.4;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.4,hg002_chrY_paternal_49.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000139;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000139;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000139:5;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2609538	2609678	.	+	2	source_transcript=hg002_chrY_paternal_49.4;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.4,hg002_chrY_paternal_49.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000139;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000139;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000139:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2609679	2610407	.	+	.	source_transcript=hg002_chrY_paternal_49.4;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.4,hg002_chrY_paternal_49.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000139;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000139;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000139:5;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2610408	2614104	.	+	.	source_transcript=hg002_chrY_paternal_49.4;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.4,hg002_chrY_paternal_49.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000139;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000139;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000139:6;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2610408	2611591	.	+	2	source_transcript=hg002_chrY_paternal_49.4;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.4,hg002_chrY_paternal_49.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000139;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000139;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000139:5;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	2611589	2611591	.	+	0	source_transcript=hg002_chrY_paternal_49.4;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.4,hg002_chrY_paternal_49.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000139;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000139;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=stop_codon:HG003_chrY_T0000139;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2567001	2614104	100	+	.	source_transcript=hg002_chrY_paternal_49.5;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.5,hg002_chrY_paternal_49.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000140;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_G0000038;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=HG003_chrY_T0000140;Name=ZFY
HG003_chrY	CAT	exon	2567001	2567066	.	+	.	source_transcript=hg002_chrY_paternal_49.5;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.5,hg002_chrY_paternal_49.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000140;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000140;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000140:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2567067	2592672	.	+	.	source_transcript=hg002_chrY_paternal_49.5;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.5,hg002_chrY_paternal_49.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000140;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000140;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000140:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2592673	2593245	.	+	.	source_transcript=hg002_chrY_paternal_49.5;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.5,hg002_chrY_paternal_49.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000140;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000140;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000140:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2592690	2593245	.	+	0	source_transcript=hg002_chrY_paternal_49.5;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.5,hg002_chrY_paternal_49.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000140;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000140;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000140:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2592690	2592692	.	+	0	source_transcript=hg002_chrY_paternal_49.5;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.5,hg002_chrY_paternal_49.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000140;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000140;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=start_codon:HG003_chrY_T0000140;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2593246	2606693	.	+	.	source_transcript=hg002_chrY_paternal_49.5;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.5,hg002_chrY_paternal_49.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000140;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000140;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000140:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2606694	2606843	.	+	.	source_transcript=hg002_chrY_paternal_49.5;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.5,hg002_chrY_paternal_49.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000140;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000140;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000140:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2606694	2606843	.	+	2	source_transcript=hg002_chrY_paternal_49.5;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.5,hg002_chrY_paternal_49.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000140;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000140;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000140:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2606844	2607109	.	+	.	source_transcript=hg002_chrY_paternal_49.5;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.5,hg002_chrY_paternal_49.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000140;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000140;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000140:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2607110	2607253	.	+	.	source_transcript=hg002_chrY_paternal_49.5;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.5,hg002_chrY_paternal_49.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000140;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000140;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000140:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2607110	2607253	.	+	2	source_transcript=hg002_chrY_paternal_49.5;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.5,hg002_chrY_paternal_49.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000140;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000140;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000140:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2607254	2609537	.	+	.	source_transcript=hg002_chrY_paternal_49.5;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.5,hg002_chrY_paternal_49.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000140;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000140;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000140:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2609538	2609678	.	+	.	source_transcript=hg002_chrY_paternal_49.5;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.5,hg002_chrY_paternal_49.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000140;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000140;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000140:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2609538	2609678	.	+	2	source_transcript=hg002_chrY_paternal_49.5;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.5,hg002_chrY_paternal_49.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000140;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000140;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000140:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2609679	2610407	.	+	.	source_transcript=hg002_chrY_paternal_49.5;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.5,hg002_chrY_paternal_49.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000140;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000140;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000140:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2610408	2614104	.	+	.	source_transcript=hg002_chrY_paternal_49.5;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.5,hg002_chrY_paternal_49.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000140;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000140;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000140:5;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2610408	2611591	.	+	2	source_transcript=hg002_chrY_paternal_49.5;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.5,hg002_chrY_paternal_49.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000140;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000140;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000140:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	2611589	2611591	.	+	0	source_transcript=hg002_chrY_paternal_49.5;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.5,hg002_chrY_paternal_49.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000140;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000140;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=stop_codon:HG003_chrY_T0000140;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2567001	2614104	100	+	.	source_transcript=hg002_chrY_paternal_49.6;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.6,hg002_chrY_paternal_49.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000141;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_G0000038;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=HG003_chrY_T0000141;Name=ZFY
HG003_chrY	CAT	exon	2567001	2567066	.	+	.	source_transcript=hg002_chrY_paternal_49.6;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.6,hg002_chrY_paternal_49.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000141;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000141;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000141:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2567067	2585508	.	+	.	source_transcript=hg002_chrY_paternal_49.6;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.6,hg002_chrY_paternal_49.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000141;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000141;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000141:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2585509	2585597	.	+	.	source_transcript=hg002_chrY_paternal_49.6;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.6,hg002_chrY_paternal_49.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000141;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000141;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000141:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2585537	2585597	.	+	0	source_transcript=hg002_chrY_paternal_49.6;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.6,hg002_chrY_paternal_49.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000141;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000141;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000141:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2585537	2585539	.	+	0	source_transcript=hg002_chrY_paternal_49.6;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.6,hg002_chrY_paternal_49.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000141;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000141;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=start_codon:HG003_chrY_T0000141;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2585598	2606693	.	+	.	source_transcript=hg002_chrY_paternal_49.6;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.6,hg002_chrY_paternal_49.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000141;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000141;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000141:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2606694	2606843	.	+	.	source_transcript=hg002_chrY_paternal_49.6;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.6,hg002_chrY_paternal_49.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000141;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000141;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000141:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2606694	2606843	.	+	2	source_transcript=hg002_chrY_paternal_49.6;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.6,hg002_chrY_paternal_49.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000141;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000141;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000141:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2606844	2607109	.	+	.	source_transcript=hg002_chrY_paternal_49.6;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.6,hg002_chrY_paternal_49.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000141;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000141;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000141:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2607110	2607253	.	+	.	source_transcript=hg002_chrY_paternal_49.6;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.6,hg002_chrY_paternal_49.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000141;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000141;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000141:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2607110	2607253	.	+	2	source_transcript=hg002_chrY_paternal_49.6;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.6,hg002_chrY_paternal_49.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000141;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000141;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000141:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2607254	2609537	.	+	.	source_transcript=hg002_chrY_paternal_49.6;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.6,hg002_chrY_paternal_49.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000141;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000141;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000141:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2609538	2609678	.	+	.	source_transcript=hg002_chrY_paternal_49.6;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.6,hg002_chrY_paternal_49.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000141;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000141;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000141:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2609538	2609678	.	+	2	source_transcript=hg002_chrY_paternal_49.6;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.6,hg002_chrY_paternal_49.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000141;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000141;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000141:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2609679	2610407	.	+	.	source_transcript=hg002_chrY_paternal_49.6;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.6,hg002_chrY_paternal_49.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000141;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000141;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000141:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2610408	2614104	.	+	.	source_transcript=hg002_chrY_paternal_49.6;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.6,hg002_chrY_paternal_49.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000141;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000141;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000141:5;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2610408	2611591	.	+	2	source_transcript=hg002_chrY_paternal_49.6;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.6,hg002_chrY_paternal_49.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000141;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000141;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000141:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	2611589	2611591	.	+	0	source_transcript=hg002_chrY_paternal_49.6;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.6,hg002_chrY_paternal_49.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000141;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000141;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=stop_codon:HG003_chrY_T0000141;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2567001	2614104	100	+	.	source_transcript=hg002_chrY_paternal_49.7;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.7;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.7,hg002_chrY_paternal_49.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000142;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_G0000038;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=HG003_chrY_T0000142;Name=ZFY
HG003_chrY	CAT	exon	2567001	2567389	.	+	.	source_transcript=hg002_chrY_paternal_49.7;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.7,hg002_chrY_paternal_49.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000142;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000142;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000142:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2567390	2606693	.	+	.	source_transcript=hg002_chrY_paternal_49.7;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.7,hg002_chrY_paternal_49.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000142;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000142;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000142:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2606694	2606843	.	+	.	source_transcript=hg002_chrY_paternal_49.7;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.7,hg002_chrY_paternal_49.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000142;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000142;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000142:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2606759	2606843	.	+	0	source_transcript=hg002_chrY_paternal_49.7;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.7,hg002_chrY_paternal_49.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000142;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000142;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000142:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2606759	2606761	.	+	0	source_transcript=hg002_chrY_paternal_49.7;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.7,hg002_chrY_paternal_49.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000142;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000142;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=start_codon:HG003_chrY_T0000142;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2606844	2607109	.	+	.	source_transcript=hg002_chrY_paternal_49.7;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.7,hg002_chrY_paternal_49.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000142;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000142;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000142:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2607110	2607253	.	+	.	source_transcript=hg002_chrY_paternal_49.7;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.7,hg002_chrY_paternal_49.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000142;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000142;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000142:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2607110	2607253	.	+	2	source_transcript=hg002_chrY_paternal_49.7;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.7,hg002_chrY_paternal_49.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000142;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000142;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000142:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2607254	2609537	.	+	.	source_transcript=hg002_chrY_paternal_49.7;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.7,hg002_chrY_paternal_49.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000142;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000142;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000142:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2609538	2609678	.	+	.	source_transcript=hg002_chrY_paternal_49.7;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.7,hg002_chrY_paternal_49.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000142;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000142;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000142:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2609538	2609678	.	+	2	source_transcript=hg002_chrY_paternal_49.7;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.7,hg002_chrY_paternal_49.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000142;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000142;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000142:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2609679	2610407	.	+	.	source_transcript=hg002_chrY_paternal_49.7;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.7,hg002_chrY_paternal_49.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000142;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000142;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000142:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2610408	2614104	.	+	.	source_transcript=hg002_chrY_paternal_49.7;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.7,hg002_chrY_paternal_49.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000142;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000142;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000142:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2610408	2611591	.	+	2	source_transcript=hg002_chrY_paternal_49.7;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.7,hg002_chrY_paternal_49.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000142;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000142;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000142:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	2611589	2611591	.	+	0	source_transcript=hg002_chrY_paternal_49.7;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.7,hg002_chrY_paternal_49.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000142;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000142;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=stop_codon:HG003_chrY_T0000142;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2567001	2614104	100	+	.	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000143;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_G0000038;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=HG003_chrY_T0000143;Name=ZFY
HG003_chrY	CAT	exon	2567001	2567389	.	+	.	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000143;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000143;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000143:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2567390	2585508	.	+	.	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000143;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000143;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000143:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2585509	2585597	.	+	.	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000143;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000143;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000143:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2585537	2585597	.	+	0	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000143;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000143;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000143:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2585537	2585539	.	+	0	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000143;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000143;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=start_codon:HG003_chrY_T0000143;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2585598	2592672	.	+	.	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000143;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000143;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000143:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2592673	2593245	.	+	.	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000143;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000143;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000143:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2592673	2593245	.	+	2	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000143;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000143;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000143:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2593246	2606693	.	+	.	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000143;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000143;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000143:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2606694	2606843	.	+	.	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000143;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000143;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000143:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2606694	2606843	.	+	2	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000143;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000143;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000143:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2606844	2607109	.	+	.	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000143;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000143;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000143:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2607110	2607253	.	+	.	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000143;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000143;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000143:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2607110	2607253	.	+	2	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000143;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000143;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000143:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2607254	2608268	.	+	.	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000143;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000143;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000143:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2608269	2608421	.	+	.	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000143;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000143;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000143:5;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2608269	2608421	.	+	2	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000143;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000143;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000143:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2608422	2609537	.	+	.	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000143;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000143;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000143:5;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2609538	2609678	.	+	.	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000143;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000143;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000143:6;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2609538	2609678	.	+	2	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000143;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000143;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000143:5;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2609679	2610407	.	+	.	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000143;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000143;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000143:6;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2610408	2614104	.	+	.	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000143;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000143;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000143:7;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2610408	2611591	.	+	2	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000143;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000143;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000143:6;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	2611589	2611591	.	+	0	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000143;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000143;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=stop_codon:HG003_chrY_T0000143;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2567001	2614104	100	+	.	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000144;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_G0000038;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=HG003_chrY_T0000144;Name=ZFY
HG003_chrY	CAT	exon	2567001	2567255	.	+	.	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000144;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000144;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000144:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2567256	2585508	.	+	.	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000144;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000144;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000144:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2585509	2585597	.	+	.	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000144;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000144;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000144:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2585537	2585597	.	+	0	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000144;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000144;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000144:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2585537	2585539	.	+	0	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000144;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000144;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=start_codon:HG003_chrY_T0000144;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2585598	2592672	.	+	.	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000144;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000144;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000144:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2592673	2593245	.	+	.	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000144;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000144;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000144:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2592673	2593245	.	+	2	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000144;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000144;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000144:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2593246	2606693	.	+	.	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000144;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000144;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000144:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2606694	2606843	.	+	.	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000144;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000144;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000144:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2606694	2606843	.	+	2	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000144;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000144;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000144:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2606844	2607109	.	+	.	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000144;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000144;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000144:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2607110	2607253	.	+	.	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000144;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000144;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000144:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2607110	2607253	.	+	2	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000144;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000144;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000144:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2607254	2608268	.	+	.	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000144;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000144;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000144:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2608269	2608421	.	+	.	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000144;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000144;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000144:5;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2608269	2608421	.	+	2	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000144;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000144;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000144:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2608422	2609537	.	+	.	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000144;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000144;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000144:5;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2609538	2609678	.	+	.	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000144;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000144;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000144:6;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2609538	2609678	.	+	2	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000144;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000144;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000144:5;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2609679	2610407	.	+	.	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000144;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000144;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000144:6;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2610408	2614104	.	+	.	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000144;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000144;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000144:7;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2610408	2611591	.	+	2	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000144;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000144;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000144:6;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	2611589	2611591	.	+	0	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000144;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000144;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=stop_codon:HG003_chrY_T0000144;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2577783	2614104	100	+	.	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000145;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_G0000038;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=HG003_chrY_T0000145;Name=ZFY
HG003_chrY	CAT	exon	2577783	2577880	.	+	.	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000145;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000145;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000145:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2577881	2585508	.	+	.	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000145;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000145;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000145:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2585509	2585597	.	+	.	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000145;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000145;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000145:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2585537	2585597	.	+	0	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000145;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000145;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000145:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2585537	2585539	.	+	0	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000145;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000145;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=start_codon:HG003_chrY_T0000145;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2585598	2592672	.	+	.	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000145;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000145;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000145:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2592673	2593245	.	+	.	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000145;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000145;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000145:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2592673	2593245	.	+	2	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000145;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000145;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000145:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2593246	2606693	.	+	.	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000145;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000145;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000145:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2606694	2606843	.	+	.	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000145;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000145;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000145:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2606694	2606843	.	+	2	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000145;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000145;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000145:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2606844	2607109	.	+	.	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000145;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000145;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000145:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2607110	2607253	.	+	.	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000145;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000145;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000145:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2607110	2607253	.	+	2	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000145;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000145;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000145:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2607254	2608268	.	+	.	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000145;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000145;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000145:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2608269	2608421	.	+	.	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000145;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000145;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000145:5;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2608269	2608421	.	+	2	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000145;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000145;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000145:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2608422	2609537	.	+	.	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000145;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000145;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000145:5;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2609538	2609678	.	+	.	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000145;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000145;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000145:6;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2609538	2609678	.	+	2	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000145;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000145;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000145:5;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2609679	2610407	.	+	.	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000145;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000145;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:HG003_chrY_T0000145:6;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2610408	2614104	.	+	.	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000145;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000145;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:HG003_chrY_T0000145:7;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2610408	2611591	.	+	2	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000145;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000145;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:HG003_chrY_T0000145:6;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	2611589	2611591	.	+	0	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000145;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000145;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=stop_codon:HG003_chrY_T0000145;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	2598418	2634224	.	-	.	source_gene_common_name=ZFY-AS1;source_gene=hg002_chrY_paternal_50;alternative_source_transcripts=hg002_chrY_paternal_50.1,hg002_chrY_paternal_50.1;gene_id=HG003_chrY_G0000039;gene_biotype=lncRNA;gene_name=ZFY-AS1;gene_sources=liftoff;ID=HG003_chrY_G0000039;Name=ZFY-AS1
HG003_chrY	CAT	transcript	2598418	2634224	1000	-	.	source_transcript=hg002_chrY_paternal_50.1;source_transcript_name=hg002_chrY_paternal_50.1;source_gene=hg002_chrY_paternal_50;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_50;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_50.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_50.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY-AS1;alternative_source_transcripts=hg002_chrY_paternal_50.1,hg002_chrY_paternal_50.1;transcript_id=HG003_chrY_T0000146;gene_id=HG003_chrY_G0000039;Parent=HG003_chrY_G0000039;transcript_name=hg002_chrY_paternal_50.1;gene_name=ZFY-AS1;ID=HG003_chrY_T0000146;Name=ZFY-AS1
HG003_chrY	CAT	exon	2598418	2598538	.	-	.	source_transcript=hg002_chrY_paternal_50.1;source_transcript_name=hg002_chrY_paternal_50.1;source_gene=hg002_chrY_paternal_50;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_50;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_50.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_50.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY-AS1;alternative_source_transcripts=hg002_chrY_paternal_50.1,hg002_chrY_paternal_50.1;transcript_id=HG003_chrY_T0000146;gene_id=HG003_chrY_G0000039;Parent=HG003_chrY_T0000146;transcript_name=hg002_chrY_paternal_50.1;gene_name=ZFY-AS1;ID=exon:HG003_chrY_T0000146:0;Name=ZFY-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2598539	2613435	.	-	.	source_transcript=hg002_chrY_paternal_50.1;source_transcript_name=hg002_chrY_paternal_50.1;source_gene=hg002_chrY_paternal_50;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_50;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_50.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_50.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY-AS1;alternative_source_transcripts=hg002_chrY_paternal_50.1,hg002_chrY_paternal_50.1;transcript_id=HG003_chrY_T0000146;gene_id=HG003_chrY_G0000039;Parent=HG003_chrY_T0000146;transcript_name=hg002_chrY_paternal_50.1;gene_name=ZFY-AS1;ID=intron:HG003_chrY_T0000146:0;Name=ZFY-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2613436	2613525	.	-	.	source_transcript=hg002_chrY_paternal_50.1;source_transcript_name=hg002_chrY_paternal_50.1;source_gene=hg002_chrY_paternal_50;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_50;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_50.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_50.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY-AS1;alternative_source_transcripts=hg002_chrY_paternal_50.1,hg002_chrY_paternal_50.1;transcript_id=HG003_chrY_T0000146;gene_id=HG003_chrY_G0000039;Parent=HG003_chrY_T0000146;transcript_name=hg002_chrY_paternal_50.1;gene_name=ZFY-AS1;ID=exon:HG003_chrY_T0000146:1;Name=ZFY-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2613526	2633910	.	-	.	source_transcript=hg002_chrY_paternal_50.1;source_transcript_name=hg002_chrY_paternal_50.1;source_gene=hg002_chrY_paternal_50;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_50;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_50.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_50.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY-AS1;alternative_source_transcripts=hg002_chrY_paternal_50.1,hg002_chrY_paternal_50.1;transcript_id=HG003_chrY_T0000146;gene_id=HG003_chrY_G0000039;Parent=HG003_chrY_T0000146;transcript_name=hg002_chrY_paternal_50.1;gene_name=ZFY-AS1;ID=intron:HG003_chrY_T0000146:1;Name=ZFY-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2633911	2634224	.	-	.	source_transcript=hg002_chrY_paternal_50.1;source_transcript_name=hg002_chrY_paternal_50.1;source_gene=hg002_chrY_paternal_50;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_50;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_50.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_50.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY-AS1;alternative_source_transcripts=hg002_chrY_paternal_50.1,hg002_chrY_paternal_50.1;transcript_id=HG003_chrY_T0000146;gene_id=HG003_chrY_G0000039;Parent=HG003_chrY_T0000146;transcript_name=hg002_chrY_paternal_50.1;gene_name=ZFY-AS1;ID=exon:HG003_chrY_T0000146:2;Name=ZFY-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	2634594	2733858	.	+	.	source_gene_common_name=LINC00278;source_gene=hg002_chrY_paternal_52;alternative_source_transcripts=hg002_chrY_paternal_52.1,hg002_chrY_paternal_52.1;gene_id=HG003_chrY_G0000040;gene_biotype=lncRNA;gene_name=LINC00278;gene_sources=liftoff;ID=HG003_chrY_G0000040;Name=LINC00278
HG003_chrY	CAT	transcript	2634594	2733858	1000	+	.	source_transcript=hg002_chrY_paternal_52.1;source_transcript_name=hg002_chrY_paternal_52.1;source_gene=hg002_chrY_paternal_52;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_52;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_52.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_52.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=hg002_chrY_paternal_52.1,hg002_chrY_paternal_52.1;transcript_id=HG003_chrY_T0000147;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_G0000040;transcript_name=hg002_chrY_paternal_52.1;gene_name=LINC00278;ID=HG003_chrY_T0000147;Name=LINC00278
HG003_chrY	CAT	exon	2634594	2634815	.	+	.	source_transcript=hg002_chrY_paternal_52.1;source_transcript_name=hg002_chrY_paternal_52.1;source_gene=hg002_chrY_paternal_52;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_52;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_52.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_52.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=hg002_chrY_paternal_52.1,hg002_chrY_paternal_52.1;transcript_id=HG003_chrY_T0000147;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000147;transcript_name=hg002_chrY_paternal_52.1;gene_name=LINC00278;ID=exon:HG003_chrY_T0000147:0;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2634816	2710867	.	+	.	source_transcript=hg002_chrY_paternal_52.1;source_transcript_name=hg002_chrY_paternal_52.1;source_gene=hg002_chrY_paternal_52;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_52;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_52.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_52.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=hg002_chrY_paternal_52.1,hg002_chrY_paternal_52.1;transcript_id=HG003_chrY_T0000147;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000147;transcript_name=hg002_chrY_paternal_52.1;gene_name=LINC00278;ID=intron:HG003_chrY_T0000147:0;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2710868	2710925	.	+	.	source_transcript=hg002_chrY_paternal_52.1;source_transcript_name=hg002_chrY_paternal_52.1;source_gene=hg002_chrY_paternal_52;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_52;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_52.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_52.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=hg002_chrY_paternal_52.1,hg002_chrY_paternal_52.1;transcript_id=HG003_chrY_T0000147;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000147;transcript_name=hg002_chrY_paternal_52.1;gene_name=LINC00278;ID=exon:HG003_chrY_T0000147:1;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2710926	2728580	.	+	.	source_transcript=hg002_chrY_paternal_52.1;source_transcript_name=hg002_chrY_paternal_52.1;source_gene=hg002_chrY_paternal_52;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_52;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_52.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_52.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=hg002_chrY_paternal_52.1,hg002_chrY_paternal_52.1;transcript_id=HG003_chrY_T0000147;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000147;transcript_name=hg002_chrY_paternal_52.1;gene_name=LINC00278;ID=intron:HG003_chrY_T0000147:1;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2728581	2728642	.	+	.	source_transcript=hg002_chrY_paternal_52.1;source_transcript_name=hg002_chrY_paternal_52.1;source_gene=hg002_chrY_paternal_52;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_52;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_52.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_52.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=hg002_chrY_paternal_52.1,hg002_chrY_paternal_52.1;transcript_id=HG003_chrY_T0000147;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000147;transcript_name=hg002_chrY_paternal_52.1;gene_name=LINC00278;ID=exon:HG003_chrY_T0000147:2;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2728643	2733670	.	+	.	source_transcript=hg002_chrY_paternal_52.1;source_transcript_name=hg002_chrY_paternal_52.1;source_gene=hg002_chrY_paternal_52;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_52;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_52.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_52.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=hg002_chrY_paternal_52.1,hg002_chrY_paternal_52.1;transcript_id=HG003_chrY_T0000147;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000147;transcript_name=hg002_chrY_paternal_52.1;gene_name=LINC00278;ID=intron:HG003_chrY_T0000147:2;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2733671	2733858	.	+	.	source_transcript=hg002_chrY_paternal_52.1;source_transcript_name=hg002_chrY_paternal_52.1;source_gene=hg002_chrY_paternal_52;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_52;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_52.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_52.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=hg002_chrY_paternal_52.1,hg002_chrY_paternal_52.1;transcript_id=HG003_chrY_T0000147;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000147;transcript_name=hg002_chrY_paternal_52.1;gene_name=LINC00278;ID=exon:HG003_chrY_T0000147:3;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	3210696	3211670	.	+	.	source_gene_common_name=TGIF2LY;source_gene=hg002_chrY_paternal_55;alternative_source_transcripts=hg002_chrY_paternal_55.1,hg002_chrY_paternal_55.1;gene_id=HG003_chrY_G0000041;gene_biotype=protein_coding;gene_name=TGIF2LY;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000041;Name=TGIF2LY
HG003_chrY	CAT	transcript	3210696	3211670	100	+	.	source_transcript=hg002_chrY_paternal_55.1;source_transcript_name=hg002_chrY_paternal_55.1;source_gene=hg002_chrY_paternal_55;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_55;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_55.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_55.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TGIF2LY;alternative_source_transcripts=hg002_chrY_paternal_55.1,hg002_chrY_paternal_55.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000148;gene_id=HG003_chrY_G0000041;Parent=HG003_chrY_G0000041;transcript_name=hg002_chrY_paternal_55.1;gene_name=TGIF2LY;ID=HG003_chrY_T0000148;Name=TGIF2LY
HG003_chrY	CAT	exon	3210696	3210756	.	+	.	source_transcript=hg002_chrY_paternal_55.1;source_transcript_name=hg002_chrY_paternal_55.1;source_gene=hg002_chrY_paternal_55;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_55;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_55.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_55.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TGIF2LY;alternative_source_transcripts=hg002_chrY_paternal_55.1,hg002_chrY_paternal_55.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000148;gene_id=HG003_chrY_G0000041;Parent=HG003_chrY_T0000148;transcript_name=hg002_chrY_paternal_55.1;gene_name=TGIF2LY;ID=exon:HG003_chrY_T0000148:0;Name=TGIF2LY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	3210757	3210852	.	+	.	source_transcript=hg002_chrY_paternal_55.1;source_transcript_name=hg002_chrY_paternal_55.1;source_gene=hg002_chrY_paternal_55;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_55;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_55.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_55.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TGIF2LY;alternative_source_transcripts=hg002_chrY_paternal_55.1,hg002_chrY_paternal_55.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000148;gene_id=HG003_chrY_G0000041;Parent=HG003_chrY_T0000148;transcript_name=hg002_chrY_paternal_55.1;gene_name=TGIF2LY;ID=intron:HG003_chrY_T0000148:0;Name=TGIF2LY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	3210853	3211670	.	+	.	source_transcript=hg002_chrY_paternal_55.1;source_transcript_name=hg002_chrY_paternal_55.1;source_gene=hg002_chrY_paternal_55;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_55;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_55.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_55.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TGIF2LY;alternative_source_transcripts=hg002_chrY_paternal_55.1,hg002_chrY_paternal_55.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000148;gene_id=HG003_chrY_G0000041;Parent=HG003_chrY_T0000148;transcript_name=hg002_chrY_paternal_55.1;gene_name=TGIF2LY;ID=exon:HG003_chrY_T0000148:1;Name=TGIF2LY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	3210874	3211431	.	+	0	source_transcript=hg002_chrY_paternal_55.1;source_transcript_name=hg002_chrY_paternal_55.1;source_gene=hg002_chrY_paternal_55;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_55;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_55.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_55.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TGIF2LY;alternative_source_transcripts=hg002_chrY_paternal_55.1,hg002_chrY_paternal_55.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000148;gene_id=HG003_chrY_G0000041;Parent=HG003_chrY_T0000148;transcript_name=hg002_chrY_paternal_55.1;gene_name=TGIF2LY;ID=CDS:HG003_chrY_T0000148:0;Name=TGIF2LY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	3210874	3210876	.	+	0	source_transcript=hg002_chrY_paternal_55.1;source_transcript_name=hg002_chrY_paternal_55.1;source_gene=hg002_chrY_paternal_55;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_55;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_55.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_55.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TGIF2LY;alternative_source_transcripts=hg002_chrY_paternal_55.1,hg002_chrY_paternal_55.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000148;gene_id=HG003_chrY_G0000041;Parent=HG003_chrY_T0000148;transcript_name=hg002_chrY_paternal_55.1;gene_name=TGIF2LY;ID=start_codon:HG003_chrY_T0000148;Name=TGIF2LY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	3211429	3211431	.	+	0	source_transcript=hg002_chrY_paternal_55.1;source_transcript_name=hg002_chrY_paternal_55.1;source_gene=hg002_chrY_paternal_55;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_55;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_55.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_55.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TGIF2LY;alternative_source_transcripts=hg002_chrY_paternal_55.1,hg002_chrY_paternal_55.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000148;gene_id=HG003_chrY_G0000041;Parent=HG003_chrY_T0000148;transcript_name=hg002_chrY_paternal_55.1;gene_name=TGIF2LY;ID=stop_codon:HG003_chrY_T0000148;Name=TGIF2LY;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	3432262	3467177	.	+	.	source_gene_common_name=LOC105377227;source_gene=hg002_chrY_paternal_58;alternative_source_transcripts=hg002_chrY_paternal_58.1,hg002_chrY_paternal_58.1;gene_id=HG003_chrY_G0000042;gene_biotype=lncRNA;gene_name=LOC105377227;gene_sources=liftoff;ID=HG003_chrY_G0000042;Name=LOC105377227
HG003_chrY	CAT	transcript	3432262	3443281	1000	+	.	source_transcript=hg002_chrY_paternal_58.1;source_transcript_name=hg002_chrY_paternal_58.1;source_gene=hg002_chrY_paternal_58;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_58;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_58.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_58.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377227;alternative_source_transcripts=hg002_chrY_paternal_58.1,hg002_chrY_paternal_58.1;transcript_id=HG003_chrY_T0000149;gene_id=HG003_chrY_G0000042;Parent=HG003_chrY_G0000042;transcript_name=hg002_chrY_paternal_58.1;gene_name=LOC105377227;ID=HG003_chrY_T0000149;Name=LOC105377227
HG003_chrY	CAT	exon	3432262	3435563	.	+	.	source_transcript=hg002_chrY_paternal_58.1;source_transcript_name=hg002_chrY_paternal_58.1;source_gene=hg002_chrY_paternal_58;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_58;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_58.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_58.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377227;alternative_source_transcripts=hg002_chrY_paternal_58.1,hg002_chrY_paternal_58.1;transcript_id=HG003_chrY_T0000149;gene_id=HG003_chrY_G0000042;Parent=HG003_chrY_T0000149;transcript_name=hg002_chrY_paternal_58.1;gene_name=LOC105377227;ID=exon:HG003_chrY_T0000149:0;Name=LOC105377227;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	3435564	3435995	.	+	.	source_transcript=hg002_chrY_paternal_58.1;source_transcript_name=hg002_chrY_paternal_58.1;source_gene=hg002_chrY_paternal_58;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_58;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_58.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_58.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377227;alternative_source_transcripts=hg002_chrY_paternal_58.1,hg002_chrY_paternal_58.1;transcript_id=HG003_chrY_T0000149;gene_id=HG003_chrY_G0000042;Parent=HG003_chrY_T0000149;transcript_name=hg002_chrY_paternal_58.1;gene_name=LOC105377227;ID=intron:HG003_chrY_T0000149:0;Name=LOC105377227;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	3435996	3436107	.	+	.	source_transcript=hg002_chrY_paternal_58.1;source_transcript_name=hg002_chrY_paternal_58.1;source_gene=hg002_chrY_paternal_58;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_58;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_58.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_58.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377227;alternative_source_transcripts=hg002_chrY_paternal_58.1,hg002_chrY_paternal_58.1;transcript_id=HG003_chrY_T0000149;gene_id=HG003_chrY_G0000042;Parent=HG003_chrY_T0000149;transcript_name=hg002_chrY_paternal_58.1;gene_name=LOC105377227;ID=exon:HG003_chrY_T0000149:1;Name=LOC105377227;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	3436108	3441179	.	+	.	source_transcript=hg002_chrY_paternal_58.1;source_transcript_name=hg002_chrY_paternal_58.1;source_gene=hg002_chrY_paternal_58;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_58;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_58.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_58.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377227;alternative_source_transcripts=hg002_chrY_paternal_58.1,hg002_chrY_paternal_58.1;transcript_id=HG003_chrY_T0000149;gene_id=HG003_chrY_G0000042;Parent=HG003_chrY_T0000149;transcript_name=hg002_chrY_paternal_58.1;gene_name=LOC105377227;ID=intron:HG003_chrY_T0000149:1;Name=LOC105377227;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	3441180	3443281	.	+	.	source_transcript=hg002_chrY_paternal_58.1;source_transcript_name=hg002_chrY_paternal_58.1;source_gene=hg002_chrY_paternal_58;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_58;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_58.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_58.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377227;alternative_source_transcripts=hg002_chrY_paternal_58.1,hg002_chrY_paternal_58.1;transcript_id=HG003_chrY_T0000149;gene_id=HG003_chrY_G0000042;Parent=HG003_chrY_T0000149;transcript_name=hg002_chrY_paternal_58.1;gene_name=LOC105377227;ID=exon:HG003_chrY_T0000149:2;Name=LOC105377227;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	3432262	3464655	1000	+	.	source_transcript=hg002_chrY_paternal_58.2;source_transcript_name=hg002_chrY_paternal_58.1;source_gene=hg002_chrY_paternal_58;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_58;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_58.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_58.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377227;alternative_source_transcripts=hg002_chrY_paternal_58.2,hg002_chrY_paternal_58.2;transcript_id=HG003_chrY_T0000150;gene_id=HG003_chrY_G0000042;Parent=HG003_chrY_G0000042;transcript_name=hg002_chrY_paternal_58.1;gene_name=LOC105377227;ID=HG003_chrY_T0000150;Name=LOC105377227
HG003_chrY	CAT	exon	3432262	3435563	.	+	.	source_transcript=hg002_chrY_paternal_58.2;source_transcript_name=hg002_chrY_paternal_58.1;source_gene=hg002_chrY_paternal_58;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_58;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_58.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_58.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377227;alternative_source_transcripts=hg002_chrY_paternal_58.2,hg002_chrY_paternal_58.2;transcript_id=HG003_chrY_T0000150;gene_id=HG003_chrY_G0000042;Parent=HG003_chrY_T0000150;transcript_name=hg002_chrY_paternal_58.1;gene_name=LOC105377227;ID=exon:HG003_chrY_T0000150:0;Name=LOC105377227;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	3435564	3435995	.	+	.	source_transcript=hg002_chrY_paternal_58.2;source_transcript_name=hg002_chrY_paternal_58.1;source_gene=hg002_chrY_paternal_58;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_58;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_58.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_58.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377227;alternative_source_transcripts=hg002_chrY_paternal_58.2,hg002_chrY_paternal_58.2;transcript_id=HG003_chrY_T0000150;gene_id=HG003_chrY_G0000042;Parent=HG003_chrY_T0000150;transcript_name=hg002_chrY_paternal_58.1;gene_name=LOC105377227;ID=intron:HG003_chrY_T0000150:0;Name=LOC105377227;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	3435996	3436107	.	+	.	source_transcript=hg002_chrY_paternal_58.2;source_transcript_name=hg002_chrY_paternal_58.1;source_gene=hg002_chrY_paternal_58;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_58;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_58.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_58.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377227;alternative_source_transcripts=hg002_chrY_paternal_58.2,hg002_chrY_paternal_58.2;transcript_id=HG003_chrY_T0000150;gene_id=HG003_chrY_G0000042;Parent=HG003_chrY_T0000150;transcript_name=hg002_chrY_paternal_58.1;gene_name=LOC105377227;ID=exon:HG003_chrY_T0000150:1;Name=LOC105377227;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	3436108	3441179	.	+	.	source_transcript=hg002_chrY_paternal_58.2;source_transcript_name=hg002_chrY_paternal_58.1;source_gene=hg002_chrY_paternal_58;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_58;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_58.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_58.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377227;alternative_source_transcripts=hg002_chrY_paternal_58.2,hg002_chrY_paternal_58.2;transcript_id=HG003_chrY_T0000150;gene_id=HG003_chrY_G0000042;Parent=HG003_chrY_T0000150;transcript_name=hg002_chrY_paternal_58.1;gene_name=LOC105377227;ID=intron:HG003_chrY_T0000150:1;Name=LOC105377227;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	3441180	3441354	.	+	.	source_transcript=hg002_chrY_paternal_58.2;source_transcript_name=hg002_chrY_paternal_58.1;source_gene=hg002_chrY_paternal_58;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_58;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_58.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_58.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377227;alternative_source_transcripts=hg002_chrY_paternal_58.2,hg002_chrY_paternal_58.2;transcript_id=HG003_chrY_T0000150;gene_id=HG003_chrY_G0000042;Parent=HG003_chrY_T0000150;transcript_name=hg002_chrY_paternal_58.1;gene_name=LOC105377227;ID=exon:HG003_chrY_T0000150:2;Name=LOC105377227;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	3441355	3464025	.	+	.	source_transcript=hg002_chrY_paternal_58.2;source_transcript_name=hg002_chrY_paternal_58.1;source_gene=hg002_chrY_paternal_58;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_58;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_58.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_58.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377227;alternative_source_transcripts=hg002_chrY_paternal_58.2,hg002_chrY_paternal_58.2;transcript_id=HG003_chrY_T0000150;gene_id=HG003_chrY_G0000042;Parent=HG003_chrY_T0000150;transcript_name=hg002_chrY_paternal_58.1;gene_name=LOC105377227;ID=intron:HG003_chrY_T0000150:2;Name=LOC105377227;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	3464026	3464655	.	+	.	source_transcript=hg002_chrY_paternal_58.2;source_transcript_name=hg002_chrY_paternal_58.1;source_gene=hg002_chrY_paternal_58;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_58;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_58.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_58.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377227;alternative_source_transcripts=hg002_chrY_paternal_58.2,hg002_chrY_paternal_58.2;transcript_id=HG003_chrY_T0000150;gene_id=HG003_chrY_G0000042;Parent=HG003_chrY_T0000150;transcript_name=hg002_chrY_paternal_58.1;gene_name=LOC105377227;ID=exon:HG003_chrY_T0000150:3;Name=LOC105377227;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	3432262	3467177	1000	+	.	source_transcript=hg002_chrY_paternal_58.3;source_transcript_name=hg002_chrY_paternal_58.1;source_gene=hg002_chrY_paternal_58;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_58;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_58.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_58.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377227;alternative_source_transcripts=hg002_chrY_paternal_58.3,hg002_chrY_paternal_58.3;transcript_id=HG003_chrY_T0000151;gene_id=HG003_chrY_G0000042;Parent=HG003_chrY_G0000042;transcript_name=hg002_chrY_paternal_58.1;gene_name=LOC105377227;ID=HG003_chrY_T0000151;Name=LOC105377227
HG003_chrY	CAT	exon	3432262	3435563	.	+	.	source_transcript=hg002_chrY_paternal_58.3;source_transcript_name=hg002_chrY_paternal_58.1;source_gene=hg002_chrY_paternal_58;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_58;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_58.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_58.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377227;alternative_source_transcripts=hg002_chrY_paternal_58.3,hg002_chrY_paternal_58.3;transcript_id=HG003_chrY_T0000151;gene_id=HG003_chrY_G0000042;Parent=HG003_chrY_T0000151;transcript_name=hg002_chrY_paternal_58.1;gene_name=LOC105377227;ID=exon:HG003_chrY_T0000151:0;Name=LOC105377227;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	3435564	3435995	.	+	.	source_transcript=hg002_chrY_paternal_58.3;source_transcript_name=hg002_chrY_paternal_58.1;source_gene=hg002_chrY_paternal_58;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_58;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_58.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_58.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377227;alternative_source_transcripts=hg002_chrY_paternal_58.3,hg002_chrY_paternal_58.3;transcript_id=HG003_chrY_T0000151;gene_id=HG003_chrY_G0000042;Parent=HG003_chrY_T0000151;transcript_name=hg002_chrY_paternal_58.1;gene_name=LOC105377227;ID=intron:HG003_chrY_T0000151:0;Name=LOC105377227;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	3435996	3436107	.	+	.	source_transcript=hg002_chrY_paternal_58.3;source_transcript_name=hg002_chrY_paternal_58.1;source_gene=hg002_chrY_paternal_58;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_58;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_58.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_58.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377227;alternative_source_transcripts=hg002_chrY_paternal_58.3,hg002_chrY_paternal_58.3;transcript_id=HG003_chrY_T0000151;gene_id=HG003_chrY_G0000042;Parent=HG003_chrY_T0000151;transcript_name=hg002_chrY_paternal_58.1;gene_name=LOC105377227;ID=exon:HG003_chrY_T0000151:1;Name=LOC105377227;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	3436108	3467082	.	+	.	source_transcript=hg002_chrY_paternal_58.3;source_transcript_name=hg002_chrY_paternal_58.1;source_gene=hg002_chrY_paternal_58;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_58;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_58.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_58.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377227;alternative_source_transcripts=hg002_chrY_paternal_58.3,hg002_chrY_paternal_58.3;transcript_id=HG003_chrY_T0000151;gene_id=HG003_chrY_G0000042;Parent=HG003_chrY_T0000151;transcript_name=hg002_chrY_paternal_58.1;gene_name=LOC105377227;ID=intron:HG003_chrY_T0000151:1;Name=LOC105377227;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	3467083	3467177	.	+	.	source_transcript=hg002_chrY_paternal_58.3;source_transcript_name=hg002_chrY_paternal_58.1;source_gene=hg002_chrY_paternal_58;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_58;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_58.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_58.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377227;alternative_source_transcripts=hg002_chrY_paternal_58.3,hg002_chrY_paternal_58.3;transcript_id=HG003_chrY_T0000151;gene_id=HG003_chrY_G0000042;Parent=HG003_chrY_T0000151;transcript_name=hg002_chrY_paternal_58.1;gene_name=LOC105377227;ID=exon:HG003_chrY_T0000151:2;Name=LOC105377227;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	4240038	4240076	.	+	.	source_gene_common_name=MIR9985;source_gene=hg002_chrY_paternal_62;alternative_source_transcripts=hg002_chrY_paternal_62.1,hg002_chrY_paternal_62.1;gene_id=HG003_chrY_G0000043;gene_biotype=miRNA;gene_name=MIR9985;gene_sources=liftoff;ID=HG003_chrY_G0000043;Name=MIR9985
HG003_chrY	CAT	transcript	4240038	4240148	1000	+	.	source_transcript=hg002_chrY_paternal_62.1;source_transcript_name=hg002_chrY_paternal_62.1;source_gene=hg002_chrY_paternal_62;source_gene_biotype=miRNA;original_gene_id=hg002_chrY_paternal_62;gene_biotype=miRNA;transcript_biotype=primary_transcript;alignment_id=hg002_chrY_paternal_62.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_62.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MIR9985;alternative_source_transcripts=hg002_chrY_paternal_62.1,hg002_chrY_paternal_62.1;transcript_id=HG003_chrY_T0000152;gene_id=HG003_chrY_G0000043;Parent=HG003_chrY_G0000043;transcript_name=hg002_chrY_paternal_62.1;gene_name=MIR9985;ID=HG003_chrY_T0000152;Name=MIR9985
HG003_chrY	CAT	exon	4240038	4240148	.	+	.	source_transcript=hg002_chrY_paternal_62.1;source_transcript_name=hg002_chrY_paternal_62.1;source_gene=hg002_chrY_paternal_62;source_gene_biotype=miRNA;original_gene_id=hg002_chrY_paternal_62;gene_biotype=miRNA;transcript_biotype=primary_transcript;alignment_id=hg002_chrY_paternal_62.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_62.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MIR9985;alternative_source_transcripts=hg002_chrY_paternal_62.1,hg002_chrY_paternal_62.1;transcript_id=HG003_chrY_T0000152;gene_id=HG003_chrY_G0000043;Parent=HG003_chrY_T0000152;transcript_name=hg002_chrY_paternal_62.1;gene_name=MIR9985;ID=exon:HG003_chrY_T0000152:0;Name=MIR9985;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	4240058	4240076	1000	+	.	source_transcript=hg002_chrY_paternal_62.2;source_transcript_name=hg002_chrY_paternal_62.1;source_gene=hg002_chrY_paternal_62;source_gene_biotype=miRNA;original_gene_id=hg002_chrY_paternal_62;gene_biotype=miRNA;transcript_biotype=miRNA;alignment_id=hg002_chrY_paternal_62.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_62.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MIR9985;alternative_source_transcripts=hg002_chrY_paternal_62.2,hg002_chrY_paternal_62.2;transcript_id=HG003_chrY_T0000153;gene_id=HG003_chrY_G0000043;Parent=HG003_chrY_G0000043;transcript_name=hg002_chrY_paternal_62.1;gene_name=MIR9985;ID=HG003_chrY_T0000153;Name=MIR9985
HG003_chrY	CAT	exon	4240058	4240076	.	+	.	source_transcript=hg002_chrY_paternal_62.2;source_transcript_name=hg002_chrY_paternal_62.1;source_gene=hg002_chrY_paternal_62;source_gene_biotype=miRNA;original_gene_id=hg002_chrY_paternal_62;gene_biotype=miRNA;transcript_biotype=miRNA;alignment_id=hg002_chrY_paternal_62.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_62.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MIR9985;alternative_source_transcripts=hg002_chrY_paternal_62.2,hg002_chrY_paternal_62.2;transcript_id=HG003_chrY_T0000153;gene_id=HG003_chrY_G0000043;Parent=HG003_chrY_T0000153;transcript_name=hg002_chrY_paternal_62.1;gene_name=MIR9985;ID=exon:HG003_chrY_T0000153:0;Name=MIR9985;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	4634234	5376655	.	+	.	source_gene_common_name=PCDH11Y;source_gene=hg002_chrY_paternal_64;alternative_source_transcripts=hg002_chrY_paternal_64.1,hg002_chrY_paternal_64.1;gene_id=HG003_chrY_G0000044;gene_biotype=protein_coding;gene_name=PCDH11Y;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000044;Name=PCDH11Y
HG003_chrY	CAT	transcript	4634234	4739553	100	+	.	source_transcript=hg002_chrY_paternal_64.1;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.1,hg002_chrY_paternal_64.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000154;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_G0000044;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=HG003_chrY_T0000154;Name=PCDH11Y
HG003_chrY	CAT	exon	4634234	4634543	.	+	.	source_transcript=hg002_chrY_paternal_64.1;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.1,hg002_chrY_paternal_64.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000154;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000154;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000154:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4634544	4664848	.	+	.	source_transcript=hg002_chrY_paternal_64.1;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.1,hg002_chrY_paternal_64.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000154;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000154;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000154:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4664849	4665017	.	+	.	source_transcript=hg002_chrY_paternal_64.1;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.1,hg002_chrY_paternal_64.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000154;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000154;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000154:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4665018	4665855	.	+	.	source_transcript=hg002_chrY_paternal_64.1;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.1,hg002_chrY_paternal_64.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000154;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000154;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000154:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4665856	4665961	.	+	.	source_transcript=hg002_chrY_paternal_64.1;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.1,hg002_chrY_paternal_64.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000154;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000154;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000154:2;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4665962	4666619	.	+	.	source_transcript=hg002_chrY_paternal_64.1;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.1,hg002_chrY_paternal_64.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000154;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000154;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000154:2;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4666620	4666678	.	+	.	source_transcript=hg002_chrY_paternal_64.1;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.1,hg002_chrY_paternal_64.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000154;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000154;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000154:3;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	4666647	4666678	.	+	0	source_transcript=hg002_chrY_paternal_64.1;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.1,hg002_chrY_paternal_64.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000154;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000154;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000154:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	4666647	4666649	.	+	0	source_transcript=hg002_chrY_paternal_64.1;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.1,hg002_chrY_paternal_64.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000154;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000154;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=start_codon:HG003_chrY_T0000154;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4666679	4690838	.	+	.	source_transcript=hg002_chrY_paternal_64.1;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.1,hg002_chrY_paternal_64.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000154;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000154;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000154:3;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4690839	4691409	.	+	.	source_transcript=hg002_chrY_paternal_64.1;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.1,hg002_chrY_paternal_64.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000154;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000154;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000154:4;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	4690839	4691409	.	+	1	source_transcript=hg002_chrY_paternal_64.1;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.1,hg002_chrY_paternal_64.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000154;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000154;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000154:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4691410	4732169	.	+	.	source_transcript=hg002_chrY_paternal_64.1;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.1,hg002_chrY_paternal_64.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000154;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000154;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000154:4;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4732170	4734662	.	+	.	source_transcript=hg002_chrY_paternal_64.1;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.1,hg002_chrY_paternal_64.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000154;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000154;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000154:5;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	4732170	4734662	.	+	0	source_transcript=hg002_chrY_paternal_64.1;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.1,hg002_chrY_paternal_64.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000154;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000154;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000154:2;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4734663	4738298	.	+	.	source_transcript=hg002_chrY_paternal_64.1;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.1,hg002_chrY_paternal_64.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000154;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000154;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000154:5;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4738299	4739553	.	+	.	source_transcript=hg002_chrY_paternal_64.1;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.1,hg002_chrY_paternal_64.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000154;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000154;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000154:6;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	4738299	4738316	.	+	0	source_transcript=hg002_chrY_paternal_64.1;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.1,hg002_chrY_paternal_64.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000154;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000154;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000154:3;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	4738314	4738316	.	+	0	source_transcript=hg002_chrY_paternal_64.1;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.1,hg002_chrY_paternal_64.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000154;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000154;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=stop_codon:HG003_chrY_T0000154;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	4634234	4739553	100	+	.	source_transcript=hg002_chrY_paternal_64.2;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.2,hg002_chrY_paternal_64.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000155;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_G0000044;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=HG003_chrY_T0000155;Name=PCDH11Y
HG003_chrY	CAT	exon	4634234	4634543	.	+	.	source_transcript=hg002_chrY_paternal_64.2;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.2,hg002_chrY_paternal_64.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000155;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000155;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000155:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4634544	4665855	.	+	.	source_transcript=hg002_chrY_paternal_64.2;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.2,hg002_chrY_paternal_64.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000155;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000155;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000155:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4665856	4665961	.	+	.	source_transcript=hg002_chrY_paternal_64.2;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.2,hg002_chrY_paternal_64.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000155;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000155;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000155:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4665962	4666619	.	+	.	source_transcript=hg002_chrY_paternal_64.2;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.2,hg002_chrY_paternal_64.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000155;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000155;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000155:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4666620	4666678	.	+	.	source_transcript=hg002_chrY_paternal_64.2;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.2,hg002_chrY_paternal_64.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000155;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000155;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000155:2;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	4666647	4666678	.	+	0	source_transcript=hg002_chrY_paternal_64.2;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.2,hg002_chrY_paternal_64.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000155;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000155;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000155:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	4666647	4666649	.	+	0	source_transcript=hg002_chrY_paternal_64.2;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.2,hg002_chrY_paternal_64.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000155;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000155;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=start_codon:HG003_chrY_T0000155;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4666679	4690838	.	+	.	source_transcript=hg002_chrY_paternal_64.2;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.2,hg002_chrY_paternal_64.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000155;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000155;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000155:2;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4690839	4691409	.	+	.	source_transcript=hg002_chrY_paternal_64.2;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.2,hg002_chrY_paternal_64.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000155;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000155;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000155:3;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	4690839	4691409	.	+	1	source_transcript=hg002_chrY_paternal_64.2;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.2,hg002_chrY_paternal_64.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000155;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000155;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000155:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4691410	4732169	.	+	.	source_transcript=hg002_chrY_paternal_64.2;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.2,hg002_chrY_paternal_64.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000155;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000155;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000155:3;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4732170	4734662	.	+	.	source_transcript=hg002_chrY_paternal_64.2;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.2,hg002_chrY_paternal_64.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000155;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000155;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000155:4;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	4732170	4734662	.	+	0	source_transcript=hg002_chrY_paternal_64.2;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.2,hg002_chrY_paternal_64.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000155;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000155;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000155:2;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4734663	4738298	.	+	.	source_transcript=hg002_chrY_paternal_64.2;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.2,hg002_chrY_paternal_64.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000155;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000155;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000155:4;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4738299	4739553	.	+	.	source_transcript=hg002_chrY_paternal_64.2;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.2,hg002_chrY_paternal_64.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000155;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000155;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000155:5;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	4738299	4738316	.	+	0	source_transcript=hg002_chrY_paternal_64.2;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.2,hg002_chrY_paternal_64.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000155;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000155;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000155:3;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	4738314	4738316	.	+	0	source_transcript=hg002_chrY_paternal_64.2;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.2,hg002_chrY_paternal_64.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000155;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000155;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=stop_codon:HG003_chrY_T0000155;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	4634234	5376651	100	+	.	source_transcript=hg002_chrY_paternal_64.3;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.3,hg002_chrY_paternal_64.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000156;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_G0000044;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=HG003_chrY_T0000156;Name=PCDH11Y
HG003_chrY	CAT	exon	4634234	4634543	.	+	.	source_transcript=hg002_chrY_paternal_64.3;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.3,hg002_chrY_paternal_64.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000156;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000156;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000156:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4634544	4690838	.	+	.	source_transcript=hg002_chrY_paternal_64.3;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.3,hg002_chrY_paternal_64.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000156;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000156;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000156:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4690839	4691409	.	+	.	source_transcript=hg002_chrY_paternal_64.3;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.3,hg002_chrY_paternal_64.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000156;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000156;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000156:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	4691050	4691409	.	+	0	source_transcript=hg002_chrY_paternal_64.3;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.3,hg002_chrY_paternal_64.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000156;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000156;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000156:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	4691050	4691052	.	+	0	source_transcript=hg002_chrY_paternal_64.3;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.3,hg002_chrY_paternal_64.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000156;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000156;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=start_codon:HG003_chrY_T0000156;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4691410	4732169	.	+	.	source_transcript=hg002_chrY_paternal_64.3;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.3,hg002_chrY_paternal_64.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000156;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000156;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000156:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4732170	4734662	.	+	.	source_transcript=hg002_chrY_paternal_64.3;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.3,hg002_chrY_paternal_64.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000156;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000156;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000156:2;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	4732170	4734662	.	+	0	source_transcript=hg002_chrY_paternal_64.3;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.3,hg002_chrY_paternal_64.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000156;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000156;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000156:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4734663	5135028	.	+	.	source_transcript=hg002_chrY_paternal_64.3;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.3,hg002_chrY_paternal_64.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000156;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000156;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000156:2;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5135029	5135227	.	+	.	source_transcript=hg002_chrY_paternal_64.3;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.3,hg002_chrY_paternal_64.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000156;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000156;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000156:3;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	5135029	5135227	.	+	0	source_transcript=hg002_chrY_paternal_64.3;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.3,hg002_chrY_paternal_64.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000156;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000156;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000156:2;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5135228	5216188	.	+	.	source_transcript=hg002_chrY_paternal_64.3;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.3,hg002_chrY_paternal_64.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000156;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000156;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000156:3;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5216189	5216212	.	+	.	source_transcript=hg002_chrY_paternal_64.3;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.3,hg002_chrY_paternal_64.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000156;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000156;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000156:4;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	5216189	5216212	.	+	2	source_transcript=hg002_chrY_paternal_64.3;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.3,hg002_chrY_paternal_64.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000156;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000156;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000156:3;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5216213	5371698	.	+	.	source_transcript=hg002_chrY_paternal_64.3;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.3,hg002_chrY_paternal_64.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000156;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000156;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000156:4;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5371699	5376651	.	+	.	source_transcript=hg002_chrY_paternal_64.3;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.3,hg002_chrY_paternal_64.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000156;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000156;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000156:5;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	5371699	5372369	.	+	2	source_transcript=hg002_chrY_paternal_64.3;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.3,hg002_chrY_paternal_64.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000156;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000156;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000156:4;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	5372367	5372369	.	+	0	source_transcript=hg002_chrY_paternal_64.3;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.3,hg002_chrY_paternal_64.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000156;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000156;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=stop_codon:HG003_chrY_T0000156;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	4634234	5376655	100	+	.	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000157;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_G0000044;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=HG003_chrY_T0000157;Name=PCDH11Y
HG003_chrY	CAT	exon	4634234	4634543	.	+	.	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000157;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000157;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000157:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4634544	4636625	.	+	.	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000157;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000157;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000157:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4636626	4640673	.	+	.	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000157;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000157;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000157:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4640674	4664848	.	+	.	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000157;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000157;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000157:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4664849	4665017	.	+	.	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000157;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000157;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000157:2;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4665018	4665164	.	+	.	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000157;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000157;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000157:2;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4665165	4665296	.	+	.	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000157;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000157;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000157:3;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4665297	4665855	.	+	.	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000157;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000157;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000157:3;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4665856	4665961	.	+	.	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000157;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000157;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000157:4;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4665962	4666619	.	+	.	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000157;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000157;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000157:4;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4666620	4666678	.	+	.	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000157;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000157;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000157:5;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	4666647	4666678	.	+	0	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000157;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000157;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000157:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	4666647	4666649	.	+	0	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000157;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000157;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=start_codon:HG003_chrY_T0000157;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4666679	4690838	.	+	.	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000157;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000157;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000157:5;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4690839	4691409	.	+	.	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000157;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000157;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000157:6;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	4690839	4691409	.	+	1	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000157;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000157;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000157:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4691410	4732169	.	+	.	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000157;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000157;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000157:6;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4732170	4734662	.	+	.	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000157;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000157;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000157:7;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	4732170	4734662	.	+	0	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000157;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000157;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000157:2;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4734663	5135028	.	+	.	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000157;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000157;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000157:7;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5135029	5135227	.	+	.	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000157;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000157;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000157:8;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	5135029	5135227	.	+	0	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000157;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000157;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000157:3;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5135228	5216188	.	+	.	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000157;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000157;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000157:8;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5216189	5216212	.	+	.	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000157;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000157;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000157:9;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	5216189	5216212	.	+	2	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000157;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000157;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000157:4;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5216213	5371698	.	+	.	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000157;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000157;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000157:9;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5371699	5376655	.	+	.	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000157;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000157;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000157:10;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	5371699	5372369	.	+	2	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000157;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000157;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000157:5;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	5372367	5372369	.	+	0	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000157;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000157;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=stop_codon:HG003_chrY_T0000157;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	4634234	5376655	100	+	.	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000158;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_G0000044;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=HG003_chrY_T0000158;Name=PCDH11Y
HG003_chrY	CAT	exon	4634234	4634543	.	+	.	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000158;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000158;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000158:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4634544	4664848	.	+	.	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000158;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000158;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000158:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4664849	4665017	.	+	.	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000158;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000158;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000158:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4665018	4665164	.	+	.	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000158;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000158;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000158:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4665165	4665296	.	+	.	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000158;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000158;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000158:2;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4665297	4665855	.	+	.	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000158;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000158;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000158:2;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4665856	4665961	.	+	.	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000158;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000158;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000158:3;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4665962	4666619	.	+	.	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000158;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000158;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000158:3;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4666620	4666678	.	+	.	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000158;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000158;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000158:4;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	4666647	4666678	.	+	0	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000158;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000158;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000158:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	4666647	4666649	.	+	0	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000158;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000158;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=start_codon:HG003_chrY_T0000158;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4666679	4690838	.	+	.	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000158;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000158;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000158:4;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4690839	4691409	.	+	.	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000158;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000158;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000158:5;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	4690839	4691409	.	+	1	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000158;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000158;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000158:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4691410	4732169	.	+	.	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000158;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000158;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000158:5;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4732170	4734662	.	+	.	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000158;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000158;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000158:6;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	4732170	4734662	.	+	0	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000158;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000158;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000158:2;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4734663	5135028	.	+	.	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000158;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000158;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000158:6;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5135029	5135227	.	+	.	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000158;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000158;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000158:7;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	5135029	5135227	.	+	0	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000158;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000158;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000158:3;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5135228	5216188	.	+	.	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000158;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000158;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000158:7;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5216189	5216212	.	+	.	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000158;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000158;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000158:8;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	5216189	5216212	.	+	2	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000158;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000158;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000158:4;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5216213	5371698	.	+	.	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000158;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000158;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000158:8;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5371699	5376655	.	+	.	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000158;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000158;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000158:9;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	5371699	5372369	.	+	2	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000158;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000158;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000158:5;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	5372367	5372369	.	+	0	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000158;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000158;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=stop_codon:HG003_chrY_T0000158;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	4634234	5376655	100	+	.	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000159;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_G0000044;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=HG003_chrY_T0000159;Name=PCDH11Y
HG003_chrY	CAT	exon	4634234	4634543	.	+	.	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000159;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000159;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000159:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4634544	4636625	.	+	.	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000159;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000159;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000159:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4636626	4636696	.	+	.	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000159;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000159;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000159:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4636697	4665855	.	+	.	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000159;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000159;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000159:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4665856	4665961	.	+	.	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000159;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000159;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000159:2;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4665962	4666619	.	+	.	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000159;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000159;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000159:2;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4666620	4666678	.	+	.	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000159;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000159;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000159:3;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	4666647	4666678	.	+	0	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000159;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000159;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000159:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	4666647	4666649	.	+	0	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000159;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000159;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=start_codon:HG003_chrY_T0000159;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4666679	4690838	.	+	.	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000159;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000159;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000159:3;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4690839	4691409	.	+	.	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000159;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000159;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000159:4;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	4690839	4691409	.	+	1	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000159;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000159;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000159:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4691410	4732169	.	+	.	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000159;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000159;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000159:4;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4732170	4734662	.	+	.	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000159;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000159;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000159:5;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	4732170	4734662	.	+	0	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000159;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000159;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000159:2;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4734663	5135028	.	+	.	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000159;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000159;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000159:5;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5135029	5135227	.	+	.	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000159;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000159;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000159:6;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	5135029	5135227	.	+	0	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000159;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000159;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000159:3;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5135228	5216188	.	+	.	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000159;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000159;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000159:6;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5216189	5216212	.	+	.	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000159;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000159;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000159:7;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	5216189	5216212	.	+	2	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000159;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000159;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000159:4;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5216213	5371698	.	+	.	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000159;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000159;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000159:7;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5371699	5376655	.	+	.	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000159;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000159;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000159:8;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	5371699	5372369	.	+	2	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000159;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000159;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000159:5;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	5372367	5372369	.	+	0	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000159;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000159;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=stop_codon:HG003_chrY_T0000159;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	4690038	4739553	100	+	.	source_transcript=hg002_chrY_paternal_64.7;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.7;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.7,hg002_chrY_paternal_64.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000160;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_G0000044;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=HG003_chrY_T0000160;Name=PCDH11Y
HG003_chrY	CAT	exon	4690038	4691409	.	+	.	source_transcript=hg002_chrY_paternal_64.7;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.7,hg002_chrY_paternal_64.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000160;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000160;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000160:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	4690774	4691409	.	+	0	source_transcript=hg002_chrY_paternal_64.7;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.7,hg002_chrY_paternal_64.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000160;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000160;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000160:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	4690774	4690776	.	+	0	source_transcript=hg002_chrY_paternal_64.7;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.7,hg002_chrY_paternal_64.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000160;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000160;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=start_codon:HG003_chrY_T0000160;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4691410	4732169	.	+	.	source_transcript=hg002_chrY_paternal_64.7;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.7,hg002_chrY_paternal_64.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000160;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000160;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000160:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4732170	4734662	.	+	.	source_transcript=hg002_chrY_paternal_64.7;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.7,hg002_chrY_paternal_64.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000160;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000160;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000160:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	4732170	4734662	.	+	0	source_transcript=hg002_chrY_paternal_64.7;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.7,hg002_chrY_paternal_64.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000160;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000160;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000160:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4734663	4738298	.	+	.	source_transcript=hg002_chrY_paternal_64.7;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.7,hg002_chrY_paternal_64.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000160;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000160;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000160:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4738299	4739553	.	+	.	source_transcript=hg002_chrY_paternal_64.7;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.7,hg002_chrY_paternal_64.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000160;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000160;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000160:2;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	4738299	4738316	.	+	0	source_transcript=hg002_chrY_paternal_64.7;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.7,hg002_chrY_paternal_64.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000160;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000160;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000160:2;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	4738314	4738316	.	+	0	source_transcript=hg002_chrY_paternal_64.7;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.7,hg002_chrY_paternal_64.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000160;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000160;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=stop_codon:HG003_chrY_T0000160;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	4690040	5376655	100	+	.	source_transcript=hg002_chrY_paternal_64.8;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.8;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.8,hg002_chrY_paternal_64.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000161;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_G0000044;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=HG003_chrY_T0000161;Name=PCDH11Y
HG003_chrY	CAT	exon	4690040	4691409	.	+	.	source_transcript=hg002_chrY_paternal_64.8;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.8,hg002_chrY_paternal_64.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000161;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000161;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000161:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	4690774	4691409	.	+	0	source_transcript=hg002_chrY_paternal_64.8;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.8,hg002_chrY_paternal_64.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000161;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000161;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000161:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	4690774	4690776	.	+	0	source_transcript=hg002_chrY_paternal_64.8;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.8,hg002_chrY_paternal_64.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000161;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000161;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=start_codon:HG003_chrY_T0000161;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4691410	4732169	.	+	.	source_transcript=hg002_chrY_paternal_64.8;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.8,hg002_chrY_paternal_64.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000161;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000161;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000161:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4732170	4734662	.	+	.	source_transcript=hg002_chrY_paternal_64.8;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.8,hg002_chrY_paternal_64.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000161;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000161;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000161:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	4732170	4734662	.	+	0	source_transcript=hg002_chrY_paternal_64.8;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.8,hg002_chrY_paternal_64.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000161;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000161;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000161:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4734663	5135028	.	+	.	source_transcript=hg002_chrY_paternal_64.8;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.8,hg002_chrY_paternal_64.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000161;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000161;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000161:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5135029	5135227	.	+	.	source_transcript=hg002_chrY_paternal_64.8;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.8,hg002_chrY_paternal_64.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000161;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000161;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000161:2;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	5135029	5135227	.	+	0	source_transcript=hg002_chrY_paternal_64.8;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.8,hg002_chrY_paternal_64.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000161;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000161;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000161:2;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5135228	5216188	.	+	.	source_transcript=hg002_chrY_paternal_64.8;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.8,hg002_chrY_paternal_64.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000161;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000161;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000161:2;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5216189	5216212	.	+	.	source_transcript=hg002_chrY_paternal_64.8;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.8,hg002_chrY_paternal_64.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000161;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000161;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000161:3;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	5216189	5216212	.	+	2	source_transcript=hg002_chrY_paternal_64.8;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.8,hg002_chrY_paternal_64.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000161;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000161;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000161:3;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5216213	5371698	.	+	.	source_transcript=hg002_chrY_paternal_64.8;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.8,hg002_chrY_paternal_64.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000161;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000161;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000161:3;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5371699	5376655	.	+	.	source_transcript=hg002_chrY_paternal_64.8;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.8,hg002_chrY_paternal_64.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000161;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000161;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000161:4;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	5371699	5372369	.	+	2	source_transcript=hg002_chrY_paternal_64.8;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.8,hg002_chrY_paternal_64.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000161;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000161;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000161:4;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	5372367	5372369	.	+	0	source_transcript=hg002_chrY_paternal_64.8;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.8,hg002_chrY_paternal_64.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000161;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000161;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=stop_codon:HG003_chrY_T0000161;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	5876825	5877989	.	-	.	source_gene_common_name=TTTY23;source_gene=hg002_chrY_paternal_73;alternative_source_transcripts=hg002_chrY_paternal_73.1,hg002_chrY_paternal_73.1;gene_id=HG003_chrY_G0000045;gene_biotype=lncRNA;gene_name=TTTY23;gene_sources=liftoff;ID=HG003_chrY_G0000045;Name=TTTY23
HG003_chrY	CAT	transcript	5876825	5877989	1000	-	.	source_transcript=hg002_chrY_paternal_73.1;source_transcript_name=hg002_chrY_paternal_73.1;source_gene=hg002_chrY_paternal_73;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_73;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_73.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_73.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;alternative_source_transcripts=hg002_chrY_paternal_73.1,hg002_chrY_paternal_73.1;transcript_id=HG003_chrY_T0000162;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_G0000045;transcript_name=hg002_chrY_paternal_73.1;gene_name=TTTY23;ID=HG003_chrY_T0000162;Name=TTTY23
HG003_chrY	CAT	exon	5876825	5877133	.	-	.	source_transcript=hg002_chrY_paternal_73.1;source_transcript_name=hg002_chrY_paternal_73.1;source_gene=hg002_chrY_paternal_73;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_73;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_73.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_73.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;alternative_source_transcripts=hg002_chrY_paternal_73.1,hg002_chrY_paternal_73.1;transcript_id=HG003_chrY_T0000162;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000162;transcript_name=hg002_chrY_paternal_73.1;gene_name=TTTY23;ID=exon:HG003_chrY_T0000162:0;Name=TTTY23;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5877134	5877673	.	-	.	source_transcript=hg002_chrY_paternal_73.1;source_transcript_name=hg002_chrY_paternal_73.1;source_gene=hg002_chrY_paternal_73;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_73;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_73.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_73.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;alternative_source_transcripts=hg002_chrY_paternal_73.1,hg002_chrY_paternal_73.1;transcript_id=HG003_chrY_T0000162;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000162;transcript_name=hg002_chrY_paternal_73.1;gene_name=TTTY23;ID=intron:HG003_chrY_T0000162:0;Name=TTTY23;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5877674	5877819	.	-	.	source_transcript=hg002_chrY_paternal_73.1;source_transcript_name=hg002_chrY_paternal_73.1;source_gene=hg002_chrY_paternal_73;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_73;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_73.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_73.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;alternative_source_transcripts=hg002_chrY_paternal_73.1,hg002_chrY_paternal_73.1;transcript_id=HG003_chrY_T0000162;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000162;transcript_name=hg002_chrY_paternal_73.1;gene_name=TTTY23;ID=exon:HG003_chrY_T0000162:1;Name=TTTY23;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5877820	5877932	.	-	.	source_transcript=hg002_chrY_paternal_73.1;source_transcript_name=hg002_chrY_paternal_73.1;source_gene=hg002_chrY_paternal_73;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_73;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_73.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_73.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;alternative_source_transcripts=hg002_chrY_paternal_73.1,hg002_chrY_paternal_73.1;transcript_id=HG003_chrY_T0000162;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000162;transcript_name=hg002_chrY_paternal_73.1;gene_name=TTTY23;ID=intron:HG003_chrY_T0000162:1;Name=TTTY23;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5877933	5877989	.	-	.	source_transcript=hg002_chrY_paternal_73.1;source_transcript_name=hg002_chrY_paternal_73.1;source_gene=hg002_chrY_paternal_73;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_73;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_73.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_73.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;alternative_source_transcripts=hg002_chrY_paternal_73.1,hg002_chrY_paternal_73.1;transcript_id=HG003_chrY_T0000162;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000162;transcript_name=hg002_chrY_paternal_73.1;gene_name=TTTY23;ID=exon:HG003_chrY_T0000162:2;Name=TTTY23;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	5969671	5973877	.	-	.	source_gene_common_name=LINC00280;source_gene=hg002_chrY_paternal_77;alternative_source_transcripts=hg002_chrY_paternal_77.1,hg002_chrY_paternal_77.1;gene_id=HG003_chrY_G0000046;gene_biotype=lncRNA;gene_name=LINC00280;gene_sources=liftoff;ID=HG003_chrY_G0000046;Name=LINC00280
HG003_chrY	CAT	transcript	5969671	5973877	1000	-	.	source_transcript=hg002_chrY_paternal_77.1;source_transcript_name=hg002_chrY_paternal_77.1;source_gene=hg002_chrY_paternal_77;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_77;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_77.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_77.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00280;alternative_source_transcripts=hg002_chrY_paternal_77.1,hg002_chrY_paternal_77.1;transcript_id=HG003_chrY_T0000163;gene_id=HG003_chrY_G0000046;Parent=HG003_chrY_G0000046;transcript_name=hg002_chrY_paternal_77.1;gene_name=LINC00280;ID=HG003_chrY_T0000163;Name=LINC00280
HG003_chrY	CAT	exon	5969671	5969889	.	-	.	source_transcript=hg002_chrY_paternal_77.1;source_transcript_name=hg002_chrY_paternal_77.1;source_gene=hg002_chrY_paternal_77;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_77;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_77.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_77.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00280;alternative_source_transcripts=hg002_chrY_paternal_77.1,hg002_chrY_paternal_77.1;transcript_id=HG003_chrY_T0000163;gene_id=HG003_chrY_G0000046;Parent=HG003_chrY_T0000163;transcript_name=hg002_chrY_paternal_77.1;gene_name=LINC00280;ID=exon:HG003_chrY_T0000163:0;Name=LINC00280;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5969890	5971147	.	-	.	source_transcript=hg002_chrY_paternal_77.1;source_transcript_name=hg002_chrY_paternal_77.1;source_gene=hg002_chrY_paternal_77;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_77;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_77.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_77.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00280;alternative_source_transcripts=hg002_chrY_paternal_77.1,hg002_chrY_paternal_77.1;transcript_id=HG003_chrY_T0000163;gene_id=HG003_chrY_G0000046;Parent=HG003_chrY_T0000163;transcript_name=hg002_chrY_paternal_77.1;gene_name=LINC00280;ID=intron:HG003_chrY_T0000163:0;Name=LINC00280;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5971148	5971290	.	-	.	source_transcript=hg002_chrY_paternal_77.1;source_transcript_name=hg002_chrY_paternal_77.1;source_gene=hg002_chrY_paternal_77;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_77;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_77.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_77.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00280;alternative_source_transcripts=hg002_chrY_paternal_77.1,hg002_chrY_paternal_77.1;transcript_id=HG003_chrY_T0000163;gene_id=HG003_chrY_G0000046;Parent=HG003_chrY_T0000163;transcript_name=hg002_chrY_paternal_77.1;gene_name=LINC00280;ID=exon:HG003_chrY_T0000163:1;Name=LINC00280;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5971291	5973791	.	-	.	source_transcript=hg002_chrY_paternal_77.1;source_transcript_name=hg002_chrY_paternal_77.1;source_gene=hg002_chrY_paternal_77;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_77;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_77.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_77.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00280;alternative_source_transcripts=hg002_chrY_paternal_77.1,hg002_chrY_paternal_77.1;transcript_id=HG003_chrY_T0000163;gene_id=HG003_chrY_G0000046;Parent=HG003_chrY_T0000163;transcript_name=hg002_chrY_paternal_77.1;gene_name=LINC00280;ID=intron:HG003_chrY_T0000163:1;Name=LINC00280;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5973792	5973877	.	-	.	source_transcript=hg002_chrY_paternal_77.1;source_transcript_name=hg002_chrY_paternal_77.1;source_gene=hg002_chrY_paternal_77;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_77;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_77.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_77.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00280;alternative_source_transcripts=hg002_chrY_paternal_77.1,hg002_chrY_paternal_77.1;transcript_id=HG003_chrY_T0000163;gene_id=HG003_chrY_G0000046;Parent=HG003_chrY_T0000163;transcript_name=hg002_chrY_paternal_77.1;gene_name=LINC00280;ID=exon:HG003_chrY_T0000163:2;Name=LINC00280;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	5973947	5986041	.	-	.	source_gene_common_name=TTTY22;source_gene=hg002_chrY_paternal_78;alternative_source_transcripts=hg002_chrY_paternal_78.1,hg002_chrY_paternal_78.1;gene_id=HG003_chrY_G0000047;gene_biotype=lncRNA;gene_name=TTTY22;gene_sources=liftoff;ID=HG003_chrY_G0000047;Name=TTTY22
HG003_chrY	CAT	transcript	5973947	5986041	1000	-	.	source_transcript=hg002_chrY_paternal_78.1;source_transcript_name=hg002_chrY_paternal_78.1;source_gene=hg002_chrY_paternal_78;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_78;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_78.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_78.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;alternative_source_transcripts=hg002_chrY_paternal_78.1,hg002_chrY_paternal_78.1;transcript_id=HG003_chrY_T0000164;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=hg002_chrY_paternal_78.1;gene_name=TTTY22;ID=HG003_chrY_T0000164;Name=TTTY22
HG003_chrY	CAT	exon	5973947	5973992	.	-	.	source_transcript=hg002_chrY_paternal_78.1;source_transcript_name=hg002_chrY_paternal_78.1;source_gene=hg002_chrY_paternal_78;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_78;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_78.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_78.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;alternative_source_transcripts=hg002_chrY_paternal_78.1,hg002_chrY_paternal_78.1;transcript_id=HG003_chrY_T0000164;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000164;transcript_name=hg002_chrY_paternal_78.1;gene_name=TTTY22;ID=exon:HG003_chrY_T0000164:0;Name=TTTY22;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5973993	5977082	.	-	.	source_transcript=hg002_chrY_paternal_78.1;source_transcript_name=hg002_chrY_paternal_78.1;source_gene=hg002_chrY_paternal_78;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_78;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_78.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_78.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;alternative_source_transcripts=hg002_chrY_paternal_78.1,hg002_chrY_paternal_78.1;transcript_id=HG003_chrY_T0000164;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000164;transcript_name=hg002_chrY_paternal_78.1;gene_name=TTTY22;ID=intron:HG003_chrY_T0000164:0;Name=TTTY22;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5977083	5977121	.	-	.	source_transcript=hg002_chrY_paternal_78.1;source_transcript_name=hg002_chrY_paternal_78.1;source_gene=hg002_chrY_paternal_78;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_78;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_78.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_78.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;alternative_source_transcripts=hg002_chrY_paternal_78.1,hg002_chrY_paternal_78.1;transcript_id=HG003_chrY_T0000164;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000164;transcript_name=hg002_chrY_paternal_78.1;gene_name=TTTY22;ID=exon:HG003_chrY_T0000164:1;Name=TTTY22;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5977122	5977806	.	-	.	source_transcript=hg002_chrY_paternal_78.1;source_transcript_name=hg002_chrY_paternal_78.1;source_gene=hg002_chrY_paternal_78;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_78;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_78.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_78.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;alternative_source_transcripts=hg002_chrY_paternal_78.1,hg002_chrY_paternal_78.1;transcript_id=HG003_chrY_T0000164;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000164;transcript_name=hg002_chrY_paternal_78.1;gene_name=TTTY22;ID=intron:HG003_chrY_T0000164:1;Name=TTTY22;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5977807	5977881	.	-	.	source_transcript=hg002_chrY_paternal_78.1;source_transcript_name=hg002_chrY_paternal_78.1;source_gene=hg002_chrY_paternal_78;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_78;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_78.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_78.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;alternative_source_transcripts=hg002_chrY_paternal_78.1,hg002_chrY_paternal_78.1;transcript_id=HG003_chrY_T0000164;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000164;transcript_name=hg002_chrY_paternal_78.1;gene_name=TTTY22;ID=exon:HG003_chrY_T0000164:2;Name=TTTY22;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5977882	5982306	.	-	.	source_transcript=hg002_chrY_paternal_78.1;source_transcript_name=hg002_chrY_paternal_78.1;source_gene=hg002_chrY_paternal_78;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_78;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_78.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_78.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;alternative_source_transcripts=hg002_chrY_paternal_78.1,hg002_chrY_paternal_78.1;transcript_id=HG003_chrY_T0000164;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000164;transcript_name=hg002_chrY_paternal_78.1;gene_name=TTTY22;ID=intron:HG003_chrY_T0000164:2;Name=TTTY22;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5982307	5982418	.	-	.	source_transcript=hg002_chrY_paternal_78.1;source_transcript_name=hg002_chrY_paternal_78.1;source_gene=hg002_chrY_paternal_78;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_78;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_78.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_78.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;alternative_source_transcripts=hg002_chrY_paternal_78.1,hg002_chrY_paternal_78.1;transcript_id=HG003_chrY_T0000164;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000164;transcript_name=hg002_chrY_paternal_78.1;gene_name=TTTY22;ID=exon:HG003_chrY_T0000164:3;Name=TTTY22;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5982419	5985886	.	-	.	source_transcript=hg002_chrY_paternal_78.1;source_transcript_name=hg002_chrY_paternal_78.1;source_gene=hg002_chrY_paternal_78;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_78;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_78.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_78.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;alternative_source_transcripts=hg002_chrY_paternal_78.1,hg002_chrY_paternal_78.1;transcript_id=HG003_chrY_T0000164;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000164;transcript_name=hg002_chrY_paternal_78.1;gene_name=TTTY22;ID=intron:HG003_chrY_T0000164:3;Name=TTTY22;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5985887	5986041	.	-	.	source_transcript=hg002_chrY_paternal_78.1;source_transcript_name=hg002_chrY_paternal_78.1;source_gene=hg002_chrY_paternal_78;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_78;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_78.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_78.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;alternative_source_transcripts=hg002_chrY_paternal_78.1,hg002_chrY_paternal_78.1;transcript_id=HG003_chrY_T0000164;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000164;transcript_name=hg002_chrY_paternal_78.1;gene_name=TTTY22;ID=exon:HG003_chrY_T0000164:4;Name=TTTY22;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	5989095	5992402	.	-	.	source_gene_common_name=LOC107987342;source_gene=hg002_chrY_paternal_79;alternative_source_transcripts=hg002_chrY_paternal_79.1,hg002_chrY_paternal_79.1;gene_id=HG003_chrY_G0000048;gene_biotype=lncRNA;gene_name=LOC107987342;gene_sources=liftoff;ID=HG003_chrY_G0000048;Name=LOC107987342
HG003_chrY	CAT	transcript	5989095	5992402	1000	-	.	source_transcript=hg002_chrY_paternal_79.1;source_transcript_name=hg002_chrY_paternal_79.1;source_gene=hg002_chrY_paternal_79;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_79;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_79.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_79.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987342;alternative_source_transcripts=hg002_chrY_paternal_79.1,hg002_chrY_paternal_79.1;transcript_id=HG003_chrY_T0000165;gene_id=HG003_chrY_G0000048;Parent=HG003_chrY_G0000048;transcript_name=hg002_chrY_paternal_79.1;gene_name=LOC107987342;ID=HG003_chrY_T0000165;Name=LOC107987342
HG003_chrY	CAT	exon	5989095	5989243	.	-	.	source_transcript=hg002_chrY_paternal_79.1;source_transcript_name=hg002_chrY_paternal_79.1;source_gene=hg002_chrY_paternal_79;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_79;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_79.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_79.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987342;alternative_source_transcripts=hg002_chrY_paternal_79.1,hg002_chrY_paternal_79.1;transcript_id=HG003_chrY_T0000165;gene_id=HG003_chrY_G0000048;Parent=HG003_chrY_T0000165;transcript_name=hg002_chrY_paternal_79.1;gene_name=LOC107987342;ID=exon:HG003_chrY_T0000165:0;Name=LOC107987342;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5989244	5991774	.	-	.	source_transcript=hg002_chrY_paternal_79.1;source_transcript_name=hg002_chrY_paternal_79.1;source_gene=hg002_chrY_paternal_79;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_79;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_79.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_79.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987342;alternative_source_transcripts=hg002_chrY_paternal_79.1,hg002_chrY_paternal_79.1;transcript_id=HG003_chrY_T0000165;gene_id=HG003_chrY_G0000048;Parent=HG003_chrY_T0000165;transcript_name=hg002_chrY_paternal_79.1;gene_name=LOC107987342;ID=intron:HG003_chrY_T0000165:0;Name=LOC107987342;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5991775	5991847	.	-	.	source_transcript=hg002_chrY_paternal_79.1;source_transcript_name=hg002_chrY_paternal_79.1;source_gene=hg002_chrY_paternal_79;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_79;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_79.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_79.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987342;alternative_source_transcripts=hg002_chrY_paternal_79.1,hg002_chrY_paternal_79.1;transcript_id=HG003_chrY_T0000165;gene_id=HG003_chrY_G0000048;Parent=HG003_chrY_T0000165;transcript_name=hg002_chrY_paternal_79.1;gene_name=LOC107987342;ID=exon:HG003_chrY_T0000165:1;Name=LOC107987342;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5991848	5992223	.	-	.	source_transcript=hg002_chrY_paternal_79.1;source_transcript_name=hg002_chrY_paternal_79.1;source_gene=hg002_chrY_paternal_79;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_79;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_79.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_79.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987342;alternative_source_transcripts=hg002_chrY_paternal_79.1,hg002_chrY_paternal_79.1;transcript_id=HG003_chrY_T0000165;gene_id=HG003_chrY_G0000048;Parent=HG003_chrY_T0000165;transcript_name=hg002_chrY_paternal_79.1;gene_name=LOC107987342;ID=intron:HG003_chrY_T0000165:1;Name=LOC107987342;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5992224	5992402	.	-	.	source_transcript=hg002_chrY_paternal_79.1;source_transcript_name=hg002_chrY_paternal_79.1;source_gene=hg002_chrY_paternal_79;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_79;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_79.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_79.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987342;alternative_source_transcripts=hg002_chrY_paternal_79.1,hg002_chrY_paternal_79.1;transcript_id=HG003_chrY_T0000165;gene_id=HG003_chrY_G0000048;Parent=HG003_chrY_T0000165;transcript_name=hg002_chrY_paternal_79.1;gene_name=LOC107987342;ID=exon:HG003_chrY_T0000165:2;Name=LOC107987342;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	6012873	6034036	.	+	.	source_gene_common_name=TTTY1;source_gene=hg002_chrY_paternal_80;alternative_source_transcripts=hg002_chrY_paternal_80.1,hg002_chrY_paternal_80.1;gene_id=HG003_chrY_G0000049;gene_biotype=lncRNA;gene_name=TTTY1;gene_sources=liftoff;ID=HG003_chrY_G0000049;Name=TTTY1
HG003_chrY	CAT	transcript	6012873	6034036	1000	+	.	source_transcript=hg002_chrY_paternal_80.1;source_transcript_name=hg002_chrY_paternal_80.1;source_gene=hg002_chrY_paternal_80;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_80;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_80.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_80.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1;alternative_source_transcripts=hg002_chrY_paternal_80.1,hg002_chrY_paternal_80.1;transcript_id=HG003_chrY_T0000166;gene_id=HG003_chrY_G0000049;Parent=HG003_chrY_G0000049;transcript_name=hg002_chrY_paternal_80.1;gene_name=TTTY1;ID=HG003_chrY_T0000166;Name=TTTY1
HG003_chrY	CAT	exon	6012873	6013147	.	+	.	source_transcript=hg002_chrY_paternal_80.1;source_transcript_name=hg002_chrY_paternal_80.1;source_gene=hg002_chrY_paternal_80;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_80;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_80.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_80.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1;alternative_source_transcripts=hg002_chrY_paternal_80.1,hg002_chrY_paternal_80.1;transcript_id=HG003_chrY_T0000166;gene_id=HG003_chrY_G0000049;Parent=HG003_chrY_T0000166;transcript_name=hg002_chrY_paternal_80.1;gene_name=TTTY1;ID=exon:HG003_chrY_T0000166:0;Name=TTTY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6013148	6016571	.	+	.	source_transcript=hg002_chrY_paternal_80.1;source_transcript_name=hg002_chrY_paternal_80.1;source_gene=hg002_chrY_paternal_80;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_80;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_80.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_80.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1;alternative_source_transcripts=hg002_chrY_paternal_80.1,hg002_chrY_paternal_80.1;transcript_id=HG003_chrY_T0000166;gene_id=HG003_chrY_G0000049;Parent=HG003_chrY_T0000166;transcript_name=hg002_chrY_paternal_80.1;gene_name=TTTY1;ID=intron:HG003_chrY_T0000166:0;Name=TTTY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6016572	6016731	.	+	.	source_transcript=hg002_chrY_paternal_80.1;source_transcript_name=hg002_chrY_paternal_80.1;source_gene=hg002_chrY_paternal_80;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_80;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_80.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_80.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1;alternative_source_transcripts=hg002_chrY_paternal_80.1,hg002_chrY_paternal_80.1;transcript_id=HG003_chrY_T0000166;gene_id=HG003_chrY_G0000049;Parent=HG003_chrY_T0000166;transcript_name=hg002_chrY_paternal_80.1;gene_name=TTTY1;ID=exon:HG003_chrY_T0000166:1;Name=TTTY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6016732	6023594	.	+	.	source_transcript=hg002_chrY_paternal_80.1;source_transcript_name=hg002_chrY_paternal_80.1;source_gene=hg002_chrY_paternal_80;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_80;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_80.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_80.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1;alternative_source_transcripts=hg002_chrY_paternal_80.1,hg002_chrY_paternal_80.1;transcript_id=HG003_chrY_T0000166;gene_id=HG003_chrY_G0000049;Parent=HG003_chrY_T0000166;transcript_name=hg002_chrY_paternal_80.1;gene_name=TTTY1;ID=intron:HG003_chrY_T0000166:1;Name=TTTY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6023595	6023703	.	+	.	source_transcript=hg002_chrY_paternal_80.1;source_transcript_name=hg002_chrY_paternal_80.1;source_gene=hg002_chrY_paternal_80;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_80;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_80.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_80.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1;alternative_source_transcripts=hg002_chrY_paternal_80.1,hg002_chrY_paternal_80.1;transcript_id=HG003_chrY_T0000166;gene_id=HG003_chrY_G0000049;Parent=HG003_chrY_T0000166;transcript_name=hg002_chrY_paternal_80.1;gene_name=TTTY1;ID=exon:HG003_chrY_T0000166:2;Name=TTTY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6023704	6026059	.	+	.	source_transcript=hg002_chrY_paternal_80.1;source_transcript_name=hg002_chrY_paternal_80.1;source_gene=hg002_chrY_paternal_80;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_80;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_80.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_80.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1;alternative_source_transcripts=hg002_chrY_paternal_80.1,hg002_chrY_paternal_80.1;transcript_id=HG003_chrY_T0000166;gene_id=HG003_chrY_G0000049;Parent=HG003_chrY_T0000166;transcript_name=hg002_chrY_paternal_80.1;gene_name=TTTY1;ID=intron:HG003_chrY_T0000166:2;Name=TTTY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6026060	6026197	.	+	.	source_transcript=hg002_chrY_paternal_80.1;source_transcript_name=hg002_chrY_paternal_80.1;source_gene=hg002_chrY_paternal_80;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_80;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_80.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_80.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1;alternative_source_transcripts=hg002_chrY_paternal_80.1,hg002_chrY_paternal_80.1;transcript_id=HG003_chrY_T0000166;gene_id=HG003_chrY_G0000049;Parent=HG003_chrY_T0000166;transcript_name=hg002_chrY_paternal_80.1;gene_name=TTTY1;ID=exon:HG003_chrY_T0000166:3;Name=TTTY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6026198	6033778	.	+	.	source_transcript=hg002_chrY_paternal_80.1;source_transcript_name=hg002_chrY_paternal_80.1;source_gene=hg002_chrY_paternal_80;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_80;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_80.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_80.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1;alternative_source_transcripts=hg002_chrY_paternal_80.1,hg002_chrY_paternal_80.1;transcript_id=HG003_chrY_T0000166;gene_id=HG003_chrY_G0000049;Parent=HG003_chrY_T0000166;transcript_name=hg002_chrY_paternal_80.1;gene_name=TTTY1;ID=intron:HG003_chrY_T0000166:3;Name=TTTY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6033779	6034036	.	+	.	source_transcript=hg002_chrY_paternal_80.1;source_transcript_name=hg002_chrY_paternal_80.1;source_gene=hg002_chrY_paternal_80;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_80;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_80.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_80.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1;alternative_source_transcripts=hg002_chrY_paternal_80.1,hg002_chrY_paternal_80.1;transcript_id=HG003_chrY_T0000166;gene_id=HG003_chrY_G0000049;Parent=HG003_chrY_T0000166;transcript_name=hg002_chrY_paternal_80.1;gene_name=TTTY1;ID=exon:HG003_chrY_T0000166:4;Name=TTTY1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	6028716	6050917	.	-	.	source_gene_common_name=TTTY2B;source_gene=hg002_chrY_paternal_81;alternative_source_transcripts=hg002_chrY_paternal_81.1,hg002_chrY_paternal_81.1;gene_id=HG003_chrY_G0000050;gene_biotype=lncRNA;gene_name=TTTY2B;gene_sources=liftoff;ID=HG003_chrY_G0000050;Name=TTTY2B
HG003_chrY	CAT	transcript	6028716	6050917	1000	-	.	source_transcript=hg002_chrY_paternal_81.1;source_transcript_name=hg002_chrY_paternal_81.1;source_gene=hg002_chrY_paternal_81;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_81;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_81.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_81.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=hg002_chrY_paternal_81.1,hg002_chrY_paternal_81.1;transcript_id=HG003_chrY_T0000167;gene_id=HG003_chrY_G0000050;Parent=HG003_chrY_G0000050;transcript_name=hg002_chrY_paternal_81.1;gene_name=TTTY2B;ID=HG003_chrY_T0000167;Name=TTTY2B
HG003_chrY	CAT	exon	6028716	6029395	.	-	.	source_transcript=hg002_chrY_paternal_81.1;source_transcript_name=hg002_chrY_paternal_81.1;source_gene=hg002_chrY_paternal_81;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_81;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_81.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_81.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=hg002_chrY_paternal_81.1,hg002_chrY_paternal_81.1;transcript_id=HG003_chrY_T0000167;gene_id=HG003_chrY_G0000050;Parent=HG003_chrY_T0000167;transcript_name=hg002_chrY_paternal_81.1;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000167:0;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6029396	6030618	.	-	.	source_transcript=hg002_chrY_paternal_81.1;source_transcript_name=hg002_chrY_paternal_81.1;source_gene=hg002_chrY_paternal_81;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_81;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_81.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_81.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=hg002_chrY_paternal_81.1,hg002_chrY_paternal_81.1;transcript_id=HG003_chrY_T0000167;gene_id=HG003_chrY_G0000050;Parent=HG003_chrY_T0000167;transcript_name=hg002_chrY_paternal_81.1;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000167:0;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6030619	6030816	.	-	.	source_transcript=hg002_chrY_paternal_81.1;source_transcript_name=hg002_chrY_paternal_81.1;source_gene=hg002_chrY_paternal_81;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_81;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_81.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_81.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=hg002_chrY_paternal_81.1,hg002_chrY_paternal_81.1;transcript_id=HG003_chrY_T0000167;gene_id=HG003_chrY_G0000050;Parent=HG003_chrY_T0000167;transcript_name=hg002_chrY_paternal_81.1;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000167:1;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6030817	6030936	.	-	.	source_transcript=hg002_chrY_paternal_81.1;source_transcript_name=hg002_chrY_paternal_81.1;source_gene=hg002_chrY_paternal_81;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_81;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_81.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_81.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=hg002_chrY_paternal_81.1,hg002_chrY_paternal_81.1;transcript_id=HG003_chrY_T0000167;gene_id=HG003_chrY_G0000050;Parent=HG003_chrY_T0000167;transcript_name=hg002_chrY_paternal_81.1;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000167:1;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6030937	6031015	.	-	.	source_transcript=hg002_chrY_paternal_81.1;source_transcript_name=hg002_chrY_paternal_81.1;source_gene=hg002_chrY_paternal_81;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_81;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_81.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_81.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=hg002_chrY_paternal_81.1,hg002_chrY_paternal_81.1;transcript_id=HG003_chrY_T0000167;gene_id=HG003_chrY_G0000050;Parent=HG003_chrY_T0000167;transcript_name=hg002_chrY_paternal_81.1;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000167:2;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6031016	6033845	.	-	.	source_transcript=hg002_chrY_paternal_81.1;source_transcript_name=hg002_chrY_paternal_81.1;source_gene=hg002_chrY_paternal_81;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_81;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_81.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_81.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=hg002_chrY_paternal_81.1,hg002_chrY_paternal_81.1;transcript_id=HG003_chrY_T0000167;gene_id=HG003_chrY_G0000050;Parent=HG003_chrY_T0000167;transcript_name=hg002_chrY_paternal_81.1;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000167:2;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6033846	6034002	.	-	.	source_transcript=hg002_chrY_paternal_81.1;source_transcript_name=hg002_chrY_paternal_81.1;source_gene=hg002_chrY_paternal_81;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_81;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_81.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_81.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=hg002_chrY_paternal_81.1,hg002_chrY_paternal_81.1;transcript_id=HG003_chrY_T0000167;gene_id=HG003_chrY_G0000050;Parent=HG003_chrY_T0000167;transcript_name=hg002_chrY_paternal_81.1;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000167:3;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6034003	6034694	.	-	.	source_transcript=hg002_chrY_paternal_81.1;source_transcript_name=hg002_chrY_paternal_81.1;source_gene=hg002_chrY_paternal_81;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_81;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_81.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_81.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=hg002_chrY_paternal_81.1,hg002_chrY_paternal_81.1;transcript_id=HG003_chrY_T0000167;gene_id=HG003_chrY_G0000050;Parent=HG003_chrY_T0000167;transcript_name=hg002_chrY_paternal_81.1;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000167:3;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6034695	6034843	.	-	.	source_transcript=hg002_chrY_paternal_81.1;source_transcript_name=hg002_chrY_paternal_81.1;source_gene=hg002_chrY_paternal_81;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_81;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_81.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_81.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=hg002_chrY_paternal_81.1,hg002_chrY_paternal_81.1;transcript_id=HG003_chrY_T0000167;gene_id=HG003_chrY_G0000050;Parent=HG003_chrY_T0000167;transcript_name=hg002_chrY_paternal_81.1;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000167:4;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6034844	6042237	.	-	.	source_transcript=hg002_chrY_paternal_81.1;source_transcript_name=hg002_chrY_paternal_81.1;source_gene=hg002_chrY_paternal_81;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_81;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_81.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_81.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=hg002_chrY_paternal_81.1,hg002_chrY_paternal_81.1;transcript_id=HG003_chrY_T0000167;gene_id=HG003_chrY_G0000050;Parent=HG003_chrY_T0000167;transcript_name=hg002_chrY_paternal_81.1;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000167:4;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6042238	6042324	.	-	.	source_transcript=hg002_chrY_paternal_81.1;source_transcript_name=hg002_chrY_paternal_81.1;source_gene=hg002_chrY_paternal_81;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_81;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_81.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_81.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=hg002_chrY_paternal_81.1,hg002_chrY_paternal_81.1;transcript_id=HG003_chrY_T0000167;gene_id=HG003_chrY_G0000050;Parent=HG003_chrY_T0000167;transcript_name=hg002_chrY_paternal_81.1;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000167:5;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6042325	6044800	.	-	.	source_transcript=hg002_chrY_paternal_81.1;source_transcript_name=hg002_chrY_paternal_81.1;source_gene=hg002_chrY_paternal_81;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_81;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_81.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_81.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=hg002_chrY_paternal_81.1,hg002_chrY_paternal_81.1;transcript_id=HG003_chrY_T0000167;gene_id=HG003_chrY_G0000050;Parent=HG003_chrY_T0000167;transcript_name=hg002_chrY_paternal_81.1;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000167:5;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6044801	6044878	.	-	.	source_transcript=hg002_chrY_paternal_81.1;source_transcript_name=hg002_chrY_paternal_81.1;source_gene=hg002_chrY_paternal_81;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_81;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_81.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_81.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=hg002_chrY_paternal_81.1,hg002_chrY_paternal_81.1;transcript_id=HG003_chrY_T0000167;gene_id=HG003_chrY_G0000050;Parent=HG003_chrY_T0000167;transcript_name=hg002_chrY_paternal_81.1;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000167:6;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6044879	6050712	.	-	.	source_transcript=hg002_chrY_paternal_81.1;source_transcript_name=hg002_chrY_paternal_81.1;source_gene=hg002_chrY_paternal_81;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_81;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_81.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_81.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=hg002_chrY_paternal_81.1,hg002_chrY_paternal_81.1;transcript_id=HG003_chrY_T0000167;gene_id=HG003_chrY_G0000050;Parent=HG003_chrY_T0000167;transcript_name=hg002_chrY_paternal_81.1;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000167:6;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6050713	6050917	.	-	.	source_transcript=hg002_chrY_paternal_81.1;source_transcript_name=hg002_chrY_paternal_81.1;source_gene=hg002_chrY_paternal_81;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_81;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_81.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_81.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=hg002_chrY_paternal_81.1,hg002_chrY_paternal_81.1;transcript_id=HG003_chrY_T0000167;gene_id=HG003_chrY_G0000050;Parent=HG003_chrY_T0000167;transcript_name=hg002_chrY_paternal_81.1;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000167:7;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	6065907	6069550	.	+	.	source_gene_common_name=TTTY21B;source_gene=hg002_chrY_paternal_82;alternative_source_transcripts=hg002_chrY_paternal_82.1,hg002_chrY_paternal_82.1;gene_id=HG003_chrY_G0000051;gene_biotype=lncRNA;gene_name=TTTY21B;gene_sources=liftoff;ID=HG003_chrY_G0000051;Name=TTTY21B
HG003_chrY	CAT	transcript	6065907	6069550	1000	+	.	source_transcript=hg002_chrY_paternal_82.1;source_transcript_name=hg002_chrY_paternal_82.1;source_gene=hg002_chrY_paternal_82;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_82;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_82.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_82.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY21B;alternative_source_transcripts=hg002_chrY_paternal_82.1,hg002_chrY_paternal_82.1;transcript_id=HG003_chrY_T0000168;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_G0000051;transcript_name=hg002_chrY_paternal_82.1;gene_name=TTTY21B;ID=HG003_chrY_T0000168;Name=TTTY21B
HG003_chrY	CAT	exon	6065907	6066108	.	+	.	source_transcript=hg002_chrY_paternal_82.1;source_transcript_name=hg002_chrY_paternal_82.1;source_gene=hg002_chrY_paternal_82;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_82;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_82.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_82.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY21B;alternative_source_transcripts=hg002_chrY_paternal_82.1,hg002_chrY_paternal_82.1;transcript_id=HG003_chrY_T0000168;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000168;transcript_name=hg002_chrY_paternal_82.1;gene_name=TTTY21B;ID=exon:HG003_chrY_T0000168:0;Name=TTTY21B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6066109	6069445	.	+	.	source_transcript=hg002_chrY_paternal_82.1;source_transcript_name=hg002_chrY_paternal_82.1;source_gene=hg002_chrY_paternal_82;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_82;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_82.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_82.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY21B;alternative_source_transcripts=hg002_chrY_paternal_82.1,hg002_chrY_paternal_82.1;transcript_id=HG003_chrY_T0000168;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000168;transcript_name=hg002_chrY_paternal_82.1;gene_name=TTTY21B;ID=intron:HG003_chrY_T0000168:0;Name=TTTY21B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6069446	6069550	.	+	.	source_transcript=hg002_chrY_paternal_82.1;source_transcript_name=hg002_chrY_paternal_82.1;source_gene=hg002_chrY_paternal_82;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_82;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_82.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_82.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY21B;alternative_source_transcripts=hg002_chrY_paternal_82.1,hg002_chrY_paternal_82.1;transcript_id=HG003_chrY_T0000168;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000168;transcript_name=hg002_chrY_paternal_82.1;gene_name=TTTY21B;ID=exon:HG003_chrY_T0000168:1;Name=TTTY21B;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	6071941	6080379	.	+	.	source_gene_common_name=TTTY7;source_gene=hg002_chrY_paternal_83;alternative_source_transcripts=hg002_chrY_paternal_83.1,hg002_chrY_paternal_83.1;gene_id=HG003_chrY_G0000052;gene_biotype=lncRNA;gene_name=TTTY7;gene_sources=liftoff;ID=HG003_chrY_G0000052;Name=TTTY7
HG003_chrY	CAT	transcript	6071941	6080379	1000	+	.	source_transcript=hg002_chrY_paternal_83.1;source_transcript_name=hg002_chrY_paternal_83.1;source_gene=hg002_chrY_paternal_83;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_83;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_83.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_83.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=hg002_chrY_paternal_83.1,hg002_chrY_paternal_83.1;transcript_id=HG003_chrY_T0000169;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_G0000052;transcript_name=hg002_chrY_paternal_83.1;gene_name=TTTY7;ID=HG003_chrY_T0000169;Name=TTTY7
HG003_chrY	CAT	exon	6071941	6071977	.	+	.	source_transcript=hg002_chrY_paternal_83.1;source_transcript_name=hg002_chrY_paternal_83.1;source_gene=hg002_chrY_paternal_83;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_83;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_83.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_83.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=hg002_chrY_paternal_83.1,hg002_chrY_paternal_83.1;transcript_id=HG003_chrY_T0000169;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000169;transcript_name=hg002_chrY_paternal_83.1;gene_name=TTTY7;ID=exon:HG003_chrY_T0000169:0;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6071978	6072918	.	+	.	source_transcript=hg002_chrY_paternal_83.1;source_transcript_name=hg002_chrY_paternal_83.1;source_gene=hg002_chrY_paternal_83;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_83;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_83.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_83.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=hg002_chrY_paternal_83.1,hg002_chrY_paternal_83.1;transcript_id=HG003_chrY_T0000169;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000169;transcript_name=hg002_chrY_paternal_83.1;gene_name=TTTY7;ID=intron:HG003_chrY_T0000169:0;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6072919	6073080	.	+	.	source_transcript=hg002_chrY_paternal_83.1;source_transcript_name=hg002_chrY_paternal_83.1;source_gene=hg002_chrY_paternal_83;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_83;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_83.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_83.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=hg002_chrY_paternal_83.1,hg002_chrY_paternal_83.1;transcript_id=HG003_chrY_T0000169;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000169;transcript_name=hg002_chrY_paternal_83.1;gene_name=TTTY7;ID=exon:HG003_chrY_T0000169:1;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6073081	6075387	.	+	.	source_transcript=hg002_chrY_paternal_83.1;source_transcript_name=hg002_chrY_paternal_83.1;source_gene=hg002_chrY_paternal_83;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_83;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_83.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_83.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=hg002_chrY_paternal_83.1,hg002_chrY_paternal_83.1;transcript_id=HG003_chrY_T0000169;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000169;transcript_name=hg002_chrY_paternal_83.1;gene_name=TTTY7;ID=intron:HG003_chrY_T0000169:1;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6075388	6075462	.	+	.	source_transcript=hg002_chrY_paternal_83.1;source_transcript_name=hg002_chrY_paternal_83.1;source_gene=hg002_chrY_paternal_83;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_83;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_83.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_83.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=hg002_chrY_paternal_83.1,hg002_chrY_paternal_83.1;transcript_id=HG003_chrY_T0000169;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000169;transcript_name=hg002_chrY_paternal_83.1;gene_name=TTTY7;ID=exon:HG003_chrY_T0000169:2;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6075463	6076150	.	+	.	source_transcript=hg002_chrY_paternal_83.1;source_transcript_name=hg002_chrY_paternal_83.1;source_gene=hg002_chrY_paternal_83;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_83;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_83.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_83.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=hg002_chrY_paternal_83.1,hg002_chrY_paternal_83.1;transcript_id=HG003_chrY_T0000169;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000169;transcript_name=hg002_chrY_paternal_83.1;gene_name=TTTY7;ID=intron:HG003_chrY_T0000169:2;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6076151	6076627	.	+	.	source_transcript=hg002_chrY_paternal_83.1;source_transcript_name=hg002_chrY_paternal_83.1;source_gene=hg002_chrY_paternal_83;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_83;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_83.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_83.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=hg002_chrY_paternal_83.1,hg002_chrY_paternal_83.1;transcript_id=HG003_chrY_T0000169;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000169;transcript_name=hg002_chrY_paternal_83.1;gene_name=TTTY7;ID=exon:HG003_chrY_T0000169:3;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6076628	6078544	.	+	.	source_transcript=hg002_chrY_paternal_83.1;source_transcript_name=hg002_chrY_paternal_83.1;source_gene=hg002_chrY_paternal_83;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_83;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_83.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_83.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=hg002_chrY_paternal_83.1,hg002_chrY_paternal_83.1;transcript_id=HG003_chrY_T0000169;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000169;transcript_name=hg002_chrY_paternal_83.1;gene_name=TTTY7;ID=intron:HG003_chrY_T0000169:3;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6078545	6078658	.	+	.	source_transcript=hg002_chrY_paternal_83.1;source_transcript_name=hg002_chrY_paternal_83.1;source_gene=hg002_chrY_paternal_83;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_83;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_83.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_83.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=hg002_chrY_paternal_83.1,hg002_chrY_paternal_83.1;transcript_id=HG003_chrY_T0000169;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000169;transcript_name=hg002_chrY_paternal_83.1;gene_name=TTTY7;ID=exon:HG003_chrY_T0000169:4;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6078659	6079631	.	+	.	source_transcript=hg002_chrY_paternal_83.1;source_transcript_name=hg002_chrY_paternal_83.1;source_gene=hg002_chrY_paternal_83;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_83;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_83.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_83.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=hg002_chrY_paternal_83.1,hg002_chrY_paternal_83.1;transcript_id=HG003_chrY_T0000169;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000169;transcript_name=hg002_chrY_paternal_83.1;gene_name=TTTY7;ID=intron:HG003_chrY_T0000169:4;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6079632	6079887	.	+	.	source_transcript=hg002_chrY_paternal_83.1;source_transcript_name=hg002_chrY_paternal_83.1;source_gene=hg002_chrY_paternal_83;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_83;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_83.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_83.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=hg002_chrY_paternal_83.1,hg002_chrY_paternal_83.1;transcript_id=HG003_chrY_T0000169;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000169;transcript_name=hg002_chrY_paternal_83.1;gene_name=TTTY7;ID=exon:HG003_chrY_T0000169:5;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6079888	6080133	.	+	.	source_transcript=hg002_chrY_paternal_83.1;source_transcript_name=hg002_chrY_paternal_83.1;source_gene=hg002_chrY_paternal_83;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_83;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_83.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_83.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=hg002_chrY_paternal_83.1,hg002_chrY_paternal_83.1;transcript_id=HG003_chrY_T0000169;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000169;transcript_name=hg002_chrY_paternal_83.1;gene_name=TTTY7;ID=intron:HG003_chrY_T0000169:5;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6080134	6080379	.	+	.	source_transcript=hg002_chrY_paternal_83.1;source_transcript_name=hg002_chrY_paternal_83.1;source_gene=hg002_chrY_paternal_83;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_83;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_83.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_83.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=hg002_chrY_paternal_83.1,hg002_chrY_paternal_83.1;transcript_id=HG003_chrY_T0000169;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000169;transcript_name=hg002_chrY_paternal_83.1;gene_name=TTTY7;ID=exon:HG003_chrY_T0000169:6;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	6093500	6096099	.	-	.	source_gene_common_name=TTTY8B;source_gene=hg002_chrY_paternal_84;alternative_source_transcripts=hg002_chrY_paternal_84.1,hg002_chrY_paternal_84.1;gene_id=HG003_chrY_G0000053;gene_biotype=lncRNA;gene_name=TTTY8B;gene_sources=liftoff;ID=HG003_chrY_G0000053;Name=TTTY8B
HG003_chrY	CAT	transcript	6093500	6096099	1000	-	.	source_transcript=hg002_chrY_paternal_84.1;source_transcript_name=hg002_chrY_paternal_84.1;source_gene=hg002_chrY_paternal_84;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_84;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_84.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_84.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8B;alternative_source_transcripts=hg002_chrY_paternal_84.1,hg002_chrY_paternal_84.1;transcript_id=HG003_chrY_T0000170;gene_id=HG003_chrY_G0000053;Parent=HG003_chrY_G0000053;transcript_name=hg002_chrY_paternal_84.1;gene_name=TTTY8B;ID=HG003_chrY_T0000170;Name=TTTY8B
HG003_chrY	CAT	exon	6093500	6093689	.	-	.	source_transcript=hg002_chrY_paternal_84.1;source_transcript_name=hg002_chrY_paternal_84.1;source_gene=hg002_chrY_paternal_84;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_84;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_84.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_84.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8B;alternative_source_transcripts=hg002_chrY_paternal_84.1,hg002_chrY_paternal_84.1;transcript_id=HG003_chrY_T0000170;gene_id=HG003_chrY_G0000053;Parent=HG003_chrY_T0000170;transcript_name=hg002_chrY_paternal_84.1;gene_name=TTTY8B;ID=exon:HG003_chrY_T0000170:0;Name=TTTY8B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6093690	6095281	.	-	.	source_transcript=hg002_chrY_paternal_84.1;source_transcript_name=hg002_chrY_paternal_84.1;source_gene=hg002_chrY_paternal_84;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_84;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_84.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_84.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8B;alternative_source_transcripts=hg002_chrY_paternal_84.1,hg002_chrY_paternal_84.1;transcript_id=HG003_chrY_T0000170;gene_id=HG003_chrY_G0000053;Parent=HG003_chrY_T0000170;transcript_name=hg002_chrY_paternal_84.1;gene_name=TTTY8B;ID=intron:HG003_chrY_T0000170:0;Name=TTTY8B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6095282	6095486	.	-	.	source_transcript=hg002_chrY_paternal_84.1;source_transcript_name=hg002_chrY_paternal_84.1;source_gene=hg002_chrY_paternal_84;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_84;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_84.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_84.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8B;alternative_source_transcripts=hg002_chrY_paternal_84.1,hg002_chrY_paternal_84.1;transcript_id=HG003_chrY_T0000170;gene_id=HG003_chrY_G0000053;Parent=HG003_chrY_T0000170;transcript_name=hg002_chrY_paternal_84.1;gene_name=TTTY8B;ID=exon:HG003_chrY_T0000170:1;Name=TTTY8B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6095487	6095963	.	-	.	source_transcript=hg002_chrY_paternal_84.1;source_transcript_name=hg002_chrY_paternal_84.1;source_gene=hg002_chrY_paternal_84;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_84;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_84.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_84.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8B;alternative_source_transcripts=hg002_chrY_paternal_84.1,hg002_chrY_paternal_84.1;transcript_id=HG003_chrY_T0000170;gene_id=HG003_chrY_G0000053;Parent=HG003_chrY_T0000170;transcript_name=hg002_chrY_paternal_84.1;gene_name=TTTY8B;ID=intron:HG003_chrY_T0000170:1;Name=TTTY8B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6095964	6096099	.	-	.	source_transcript=hg002_chrY_paternal_84.1;source_transcript_name=hg002_chrY_paternal_84.1;source_gene=hg002_chrY_paternal_84;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_84;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_84.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_84.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8B;alternative_source_transcripts=hg002_chrY_paternal_84.1,hg002_chrY_paternal_84.1;transcript_id=HG003_chrY_T0000170;gene_id=HG003_chrY_G0000053;Parent=HG003_chrY_T0000170;transcript_name=hg002_chrY_paternal_84.1;gene_name=TTTY8B;ID=exon:HG003_chrY_T0000170:2;Name=TTTY8B;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	6472627	6518464	.	-	.	source_gene_common_name=AMELY;source_gene=hg002_chrY_paternal_88;alternative_source_transcripts=hg002_chrY_paternal_88.1,hg002_chrY_paternal_88.1;gene_id=HG003_chrY_G0000054;gene_biotype=protein_coding;gene_name=AMELY;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000054;Name=AMELY
HG003_chrY	CAT	transcript	6472627	6480738	100	-	.	source_transcript=hg002_chrY_paternal_88.1;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.1,hg002_chrY_paternal_88.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000171;gene_id=HG003_chrY_G0000054;Parent=HG003_chrY_G0000054;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=HG003_chrY_T0000171;Name=AMELY
HG003_chrY	CAT	exon	6472627	6472787	.	-	.	source_transcript=hg002_chrY_paternal_88.1;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.1,hg002_chrY_paternal_88.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000171;gene_id=HG003_chrY_G0000054;Parent=HG003_chrY_T0000171;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=exon:HG003_chrY_T0000171:0;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6472782	6472787	.	-	0	source_transcript=hg002_chrY_paternal_88.1;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.1,hg002_chrY_paternal_88.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000171;gene_id=HG003_chrY_G0000054;Parent=HG003_chrY_T0000171;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=CDS:HG003_chrY_T0000171:0;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	6472782	6472784	.	-	0	source_transcript=hg002_chrY_paternal_88.1;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.1,hg002_chrY_paternal_88.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000171;gene_id=HG003_chrY_G0000054;Parent=HG003_chrY_T0000171;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=stop_codon:HG003_chrY_T0000171;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6472788	6474746	.	-	.	source_transcript=hg002_chrY_paternal_88.1;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.1,hg002_chrY_paternal_88.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000171;gene_id=HG003_chrY_G0000054;Parent=HG003_chrY_T0000171;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=intron:HG003_chrY_T0000171:0;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6474747	6475172	.	-	.	source_transcript=hg002_chrY_paternal_88.1;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.1,hg002_chrY_paternal_88.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000171;gene_id=HG003_chrY_G0000054;Parent=HG003_chrY_T0000171;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=exon:HG003_chrY_T0000171:1;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6474747	6475172	.	-	0	source_transcript=hg002_chrY_paternal_88.1;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.1,hg002_chrY_paternal_88.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000171;gene_id=HG003_chrY_G0000054;Parent=HG003_chrY_T0000171;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=CDS:HG003_chrY_T0000171:1;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6475173	6475441	.	-	.	source_transcript=hg002_chrY_paternal_88.1;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.1,hg002_chrY_paternal_88.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000171;gene_id=HG003_chrY_G0000054;Parent=HG003_chrY_T0000171;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=intron:HG003_chrY_T0000171:1;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6475442	6475486	.	-	.	source_transcript=hg002_chrY_paternal_88.1;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.1,hg002_chrY_paternal_88.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000171;gene_id=HG003_chrY_G0000054;Parent=HG003_chrY_T0000171;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=exon:HG003_chrY_T0000171:2;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6475442	6475486	.	-	0	source_transcript=hg002_chrY_paternal_88.1;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.1,hg002_chrY_paternal_88.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000171;gene_id=HG003_chrY_G0000054;Parent=HG003_chrY_T0000171;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=CDS:HG003_chrY_T0000171:2;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6475487	6475577	.	-	.	source_transcript=hg002_chrY_paternal_88.1;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.1,hg002_chrY_paternal_88.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000171;gene_id=HG003_chrY_G0000054;Parent=HG003_chrY_T0000171;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=intron:HG003_chrY_T0000171:2;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6475578	6475619	.	-	.	source_transcript=hg002_chrY_paternal_88.1;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.1,hg002_chrY_paternal_88.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000171;gene_id=HG003_chrY_G0000054;Parent=HG003_chrY_T0000171;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=exon:HG003_chrY_T0000171:3;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6475578	6475619	.	-	0	source_transcript=hg002_chrY_paternal_88.1;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.1,hg002_chrY_paternal_88.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000171;gene_id=HG003_chrY_G0000054;Parent=HG003_chrY_T0000171;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=CDS:HG003_chrY_T0000171:3;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6475620	6476716	.	-	.	source_transcript=hg002_chrY_paternal_88.1;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.1,hg002_chrY_paternal_88.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000171;gene_id=HG003_chrY_G0000054;Parent=HG003_chrY_T0000171;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=intron:HG003_chrY_T0000171:3;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6476717	6476764	.	-	.	source_transcript=hg002_chrY_paternal_88.1;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.1,hg002_chrY_paternal_88.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000171;gene_id=HG003_chrY_G0000054;Parent=HG003_chrY_T0000171;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=exon:HG003_chrY_T0000171:4;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6476717	6476764	.	-	0	source_transcript=hg002_chrY_paternal_88.1;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.1,hg002_chrY_paternal_88.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000171;gene_id=HG003_chrY_G0000054;Parent=HG003_chrY_T0000171;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=CDS:HG003_chrY_T0000171:4;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6476765	6479265	.	-	.	source_transcript=hg002_chrY_paternal_88.1;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.1,hg002_chrY_paternal_88.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000171;gene_id=HG003_chrY_G0000054;Parent=HG003_chrY_T0000171;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=intron:HG003_chrY_T0000171:4;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6479266	6479331	.	-	.	source_transcript=hg002_chrY_paternal_88.1;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.1,hg002_chrY_paternal_88.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000171;gene_id=HG003_chrY_G0000054;Parent=HG003_chrY_T0000171;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=exon:HG003_chrY_T0000171:5;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6479266	6479319	.	-	0	source_transcript=hg002_chrY_paternal_88.1;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.1,hg002_chrY_paternal_88.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000171;gene_id=HG003_chrY_G0000054;Parent=HG003_chrY_T0000171;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=CDS:HG003_chrY_T0000171:5;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	6479317	6479319	.	-	0	source_transcript=hg002_chrY_paternal_88.1;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.1,hg002_chrY_paternal_88.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000171;gene_id=HG003_chrY_G0000054;Parent=HG003_chrY_T0000171;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=start_codon:HG003_chrY_T0000171;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6479332	6480682	.	-	.	source_transcript=hg002_chrY_paternal_88.1;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.1,hg002_chrY_paternal_88.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000171;gene_id=HG003_chrY_G0000054;Parent=HG003_chrY_T0000171;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=intron:HG003_chrY_T0000171:5;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6480683	6480738	.	-	.	source_transcript=hg002_chrY_paternal_88.1;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.1,hg002_chrY_paternal_88.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000171;gene_id=HG003_chrY_G0000054;Parent=HG003_chrY_T0000171;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=exon:HG003_chrY_T0000171:6;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6472627	6518464	100	-	.	source_transcript=hg002_chrY_paternal_88.2;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.2,hg002_chrY_paternal_88.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000172;gene_id=HG003_chrY_G0000054;Parent=HG003_chrY_G0000054;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=HG003_chrY_T0000172;Name=AMELY
HG003_chrY	CAT	exon	6472627	6472787	.	-	.	source_transcript=hg002_chrY_paternal_88.2;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.2,hg002_chrY_paternal_88.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000172;gene_id=HG003_chrY_G0000054;Parent=HG003_chrY_T0000172;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=exon:HG003_chrY_T0000172:0;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6472782	6472787	.	-	0	source_transcript=hg002_chrY_paternal_88.2;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.2,hg002_chrY_paternal_88.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000172;gene_id=HG003_chrY_G0000054;Parent=HG003_chrY_T0000172;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=CDS:HG003_chrY_T0000172:0;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	6472782	6472784	.	-	0	source_transcript=hg002_chrY_paternal_88.2;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.2,hg002_chrY_paternal_88.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000172;gene_id=HG003_chrY_G0000054;Parent=HG003_chrY_T0000172;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=stop_codon:HG003_chrY_T0000172;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6472788	6474746	.	-	.	source_transcript=hg002_chrY_paternal_88.2;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.2,hg002_chrY_paternal_88.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000172;gene_id=HG003_chrY_G0000054;Parent=HG003_chrY_T0000172;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=intron:HG003_chrY_T0000172:0;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6474747	6475172	.	-	.	source_transcript=hg002_chrY_paternal_88.2;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.2,hg002_chrY_paternal_88.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000172;gene_id=HG003_chrY_G0000054;Parent=HG003_chrY_T0000172;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=exon:HG003_chrY_T0000172:1;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6474747	6475172	.	-	0	source_transcript=hg002_chrY_paternal_88.2;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.2,hg002_chrY_paternal_88.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000172;gene_id=HG003_chrY_G0000054;Parent=HG003_chrY_T0000172;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=CDS:HG003_chrY_T0000172:1;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6475173	6475441	.	-	.	source_transcript=hg002_chrY_paternal_88.2;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.2,hg002_chrY_paternal_88.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000172;gene_id=HG003_chrY_G0000054;Parent=HG003_chrY_T0000172;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=intron:HG003_chrY_T0000172:1;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6475442	6475486	.	-	.	source_transcript=hg002_chrY_paternal_88.2;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.2,hg002_chrY_paternal_88.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000172;gene_id=HG003_chrY_G0000054;Parent=HG003_chrY_T0000172;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=exon:HG003_chrY_T0000172:2;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6475442	6475486	.	-	0	source_transcript=hg002_chrY_paternal_88.2;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.2,hg002_chrY_paternal_88.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000172;gene_id=HG003_chrY_G0000054;Parent=HG003_chrY_T0000172;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=CDS:HG003_chrY_T0000172:2;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6475487	6476716	.	-	.	source_transcript=hg002_chrY_paternal_88.2;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.2,hg002_chrY_paternal_88.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000172;gene_id=HG003_chrY_G0000054;Parent=HG003_chrY_T0000172;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=intron:HG003_chrY_T0000172:2;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6476717	6476764	.	-	.	source_transcript=hg002_chrY_paternal_88.2;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.2,hg002_chrY_paternal_88.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000172;gene_id=HG003_chrY_G0000054;Parent=HG003_chrY_T0000172;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=exon:HG003_chrY_T0000172:3;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6476717	6476764	.	-	0	source_transcript=hg002_chrY_paternal_88.2;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.2,hg002_chrY_paternal_88.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000172;gene_id=HG003_chrY_G0000054;Parent=HG003_chrY_T0000172;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=CDS:HG003_chrY_T0000172:3;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6476765	6479265	.	-	.	source_transcript=hg002_chrY_paternal_88.2;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.2,hg002_chrY_paternal_88.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000172;gene_id=HG003_chrY_G0000054;Parent=HG003_chrY_T0000172;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=intron:HG003_chrY_T0000172:3;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6479266	6479331	.	-	.	source_transcript=hg002_chrY_paternal_88.2;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.2,hg002_chrY_paternal_88.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000172;gene_id=HG003_chrY_G0000054;Parent=HG003_chrY_T0000172;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=exon:HG003_chrY_T0000172:4;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6479266	6479319	.	-	0	source_transcript=hg002_chrY_paternal_88.2;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.2,hg002_chrY_paternal_88.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000172;gene_id=HG003_chrY_G0000054;Parent=HG003_chrY_T0000172;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=CDS:HG003_chrY_T0000172:4;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	6479317	6479319	.	-	0	source_transcript=hg002_chrY_paternal_88.2;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.2,hg002_chrY_paternal_88.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000172;gene_id=HG003_chrY_G0000054;Parent=HG003_chrY_T0000172;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=start_codon:HG003_chrY_T0000172;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6479332	6480682	.	-	.	source_transcript=hg002_chrY_paternal_88.2;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.2,hg002_chrY_paternal_88.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000172;gene_id=HG003_chrY_G0000054;Parent=HG003_chrY_T0000172;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=intron:HG003_chrY_T0000172:4;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6480683	6480782	.	-	.	source_transcript=hg002_chrY_paternal_88.2;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.2,hg002_chrY_paternal_88.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000172;gene_id=HG003_chrY_G0000054;Parent=HG003_chrY_T0000172;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=exon:HG003_chrY_T0000172:5;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6480783	6518384	.	-	.	source_transcript=hg002_chrY_paternal_88.2;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.2,hg002_chrY_paternal_88.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000172;gene_id=HG003_chrY_G0000054;Parent=HG003_chrY_T0000172;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=intron:HG003_chrY_T0000172:5;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6518385	6518464	.	-	.	source_transcript=hg002_chrY_paternal_88.2;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.2,hg002_chrY_paternal_88.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000172;gene_id=HG003_chrY_G0000054;Parent=HG003_chrY_T0000172;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=exon:HG003_chrY_T0000172:6;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	6516577	6712400	.	+	.	source_gene_common_name=TBL1Y;source_gene=hg002_chrY_paternal_90;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;gene_id=HG003_chrY_G0000055;gene_biotype=protein_coding;gene_name=TBL1Y;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000055;Name=TBL1Y
HG003_chrY	CAT	transcript	6516577	6712400	100	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_G0000055;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=HG003_chrY_T0000173;Name=TBL1Y
HG003_chrY	CAT	exon	6516577	6516815	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000173:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6516816	6518799	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000173:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6518800	6518884	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000173:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6518885	6584923	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000173:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6584924	6584954	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000173:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6584955	6602519	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000173:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6602520	6602614	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000173:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6602615	6628163	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000173:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6628164	6628252	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000173:4;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6628253	6631748	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000173:4;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6631749	6631856	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000173:5;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6631799	6631856	.	+	0	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000173:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	6631799	6631801	.	+	0	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=start_codon:HG003_chrY_T0000173;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6631857	6649692	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000173:5;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6649693	6649838	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000173:6;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6649693	6649838	.	+	2	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000173:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6649839	6670611	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000173:6;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6670612	6670864	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000173:7;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6670612	6670864	.	+	0	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000173:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6670865	6676910	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000173:7;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6676911	6677043	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000173:8;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6676911	6677043	.	+	2	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000173:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6677044	6677434	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000173:8;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6677435	6677576	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000173:9;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6677435	6677576	.	+	1	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000173:4;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6677577	6678274	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000173:9;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6678275	6678338	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000173:10;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6678275	6678338	.	+	0	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000173:5;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6678339	6678447	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000173:10;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6678448	6678545	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000173:11;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6678448	6678545	.	+	2	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000173:6;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6678546	6681274	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000173:11;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6681275	6681335	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000173:12;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6681275	6681335	.	+	0	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000173:7;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6681336	6687445	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000173:12;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6687446	6687567	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000173:13;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6687446	6687567	.	+	2	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000173:8;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6687568	6692609	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000173:13;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6692610	6692684	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000173:14;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6692610	6692684	.	+	0	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000173:9;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6692685	6693001	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000173:14;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6693002	6693129	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000173:15;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6693002	6693129	.	+	0	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000173:10;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6693130	6693978	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000173:15;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6693979	6694144	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000173:16;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6693979	6694144	.	+	1	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000173:11;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6694145	6696800	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000173:16;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6696801	6696902	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000173:17;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6696801	6696902	.	+	0	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000173:12;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6696903	6707496	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000173:17;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6707497	6712400	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000173:18;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6707497	6707682	.	+	0	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000173:13;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	6707680	6707682	.	+	0	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000173;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=stop_codon:HG003_chrY_T0000173;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6517409	6712400	100	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_G0000055;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=HG003_chrY_T0000174;Name=TBL1Y
HG003_chrY	CAT	exon	6517409	6517694	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000174:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6517695	6518799	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000174:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6518800	6518884	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000174:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6518885	6584923	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000174:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6584924	6584954	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000174:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6584955	6602519	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000174:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6602520	6602614	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000174:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6602615	6628163	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000174:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6628164	6628252	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000174:4;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6628253	6631748	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000174:4;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6631749	6631856	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000174:5;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6631799	6631856	.	+	0	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000174:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	6631799	6631801	.	+	0	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=start_codon:HG003_chrY_T0000174;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6631857	6649692	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000174:5;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6649693	6649838	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000174:6;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6649693	6649838	.	+	2	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000174:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6649839	6670611	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000174:6;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6670612	6670864	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000174:7;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6670612	6670864	.	+	0	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000174:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6670865	6676910	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000174:7;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6676911	6677043	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000174:8;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6676911	6677043	.	+	2	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000174:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6677044	6677434	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000174:8;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6677435	6677576	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000174:9;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6677435	6677576	.	+	1	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000174:4;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6677577	6678274	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000174:9;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6678275	6678338	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000174:10;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6678275	6678338	.	+	0	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000174:5;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6678339	6678447	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000174:10;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6678448	6678545	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000174:11;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6678448	6678545	.	+	2	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000174:6;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6678546	6681274	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000174:11;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6681275	6681335	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000174:12;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6681275	6681335	.	+	0	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000174:7;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6681336	6687445	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000174:12;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6687446	6687567	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000174:13;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6687446	6687567	.	+	2	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000174:8;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6687568	6692609	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000174:13;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6692610	6692684	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000174:14;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6692610	6692684	.	+	0	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000174:9;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6692685	6693001	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000174:14;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6693002	6693129	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000174:15;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6693002	6693129	.	+	0	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000174:10;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6693130	6693978	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000174:15;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6693979	6694144	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000174:16;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6693979	6694144	.	+	1	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000174:11;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6694145	6696800	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000174:16;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6696801	6696902	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000174:17;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6696801	6696902	.	+	0	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000174:12;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6696903	6707496	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000174:17;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6707497	6712400	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000174:18;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6707497	6707682	.	+	0	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000174:13;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	6707680	6707682	.	+	0	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000174;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=stop_codon:HG003_chrY_T0000174;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6517409	6712400	100	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_G0000055;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=HG003_chrY_T0000175;Name=TBL1Y
HG003_chrY	CAT	exon	6517409	6517694	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000175:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6517695	6518799	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000175:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6518800	6518884	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000175:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6518885	6584923	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000175:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6584924	6584954	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000175:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6584955	6628163	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000175:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6628164	6628252	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000175:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6628253	6631748	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000175:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6631749	6631856	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000175:4;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6631799	6631856	.	+	0	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000175:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	6631799	6631801	.	+	0	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=start_codon:HG003_chrY_T0000175;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6631857	6649692	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000175:4;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6649693	6649838	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000175:5;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6649693	6649838	.	+	2	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000175:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6649839	6670611	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000175:5;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6670612	6670864	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000175:6;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6670612	6670864	.	+	0	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000175:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6670865	6676910	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000175:6;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6676911	6677043	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000175:7;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6676911	6677043	.	+	2	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000175:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6677044	6677434	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000175:7;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6677435	6677576	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000175:8;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6677435	6677576	.	+	1	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000175:4;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6677577	6678274	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000175:8;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6678275	6678338	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000175:9;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6678275	6678338	.	+	0	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000175:5;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6678339	6678447	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000175:9;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6678448	6678545	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000175:10;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6678448	6678545	.	+	2	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000175:6;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6678546	6681274	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000175:10;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6681275	6681335	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000175:11;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6681275	6681335	.	+	0	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000175:7;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6681336	6687445	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000175:11;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6687446	6687567	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000175:12;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6687446	6687567	.	+	2	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000175:8;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6687568	6692609	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000175:12;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6692610	6692684	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000175:13;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6692610	6692684	.	+	0	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000175:9;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6692685	6693001	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000175:13;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6693002	6693129	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000175:14;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6693002	6693129	.	+	0	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000175:10;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6693130	6693978	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000175:14;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6693979	6694144	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000175:15;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6693979	6694144	.	+	1	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000175:11;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6694145	6696800	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000175:15;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6696801	6696902	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000175:16;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6696801	6696902	.	+	0	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000175:12;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6696903	6707496	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000175:16;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6707497	6712400	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000175:17;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6707497	6707682	.	+	0	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000175:13;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	6707680	6707682	.	+	0	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000175;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=stop_codon:HG003_chrY_T0000175;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6517409	6698395	100	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_G0000055;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=HG003_chrY_T0000176;Name=TBL1Y
HG003_chrY	CAT	exon	6517409	6517694	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000176:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6517695	6518799	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000176:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6518800	6518884	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000176:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6518885	6584923	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000176:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6584924	6584954	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000176:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6584955	6602519	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000176:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6602520	6602614	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000176:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6602615	6628163	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000176:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6628164	6628252	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000176:4;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6628253	6631748	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000176:4;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6631749	6631856	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000176:5;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6631799	6631856	.	+	0	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000176:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	6631799	6631801	.	+	0	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=start_codon:HG003_chrY_T0000176;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6631857	6649692	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000176:5;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6649693	6649838	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000176:6;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6649693	6649838	.	+	2	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000176:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6649839	6670611	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000176:6;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6670612	6670864	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000176:7;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6670612	6670864	.	+	0	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000176:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6670865	6676910	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000176:7;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6676911	6677043	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000176:8;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6676911	6677043	.	+	2	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000176:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6677044	6677434	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000176:8;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6677435	6677576	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000176:9;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6677435	6677576	.	+	1	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000176:4;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6677577	6678274	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000176:9;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6678275	6678338	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000176:10;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6678275	6678338	.	+	0	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000176:5;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6678339	6678447	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000176:10;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6678448	6678545	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000176:11;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6678448	6678545	.	+	2	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000176:6;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6678546	6681274	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000176:11;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6681275	6681335	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000176:12;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6681275	6681335	.	+	0	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000176:7;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6681336	6687445	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000176:12;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6687446	6687567	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000176:13;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6687446	6687567	.	+	2	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000176:8;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6687568	6692609	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000176:13;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6692610	6692684	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000176:14;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6692610	6692684	.	+	0	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000176:9;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6692685	6693001	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000176:14;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6693002	6693129	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000176:15;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6693002	6693129	.	+	0	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000176:10;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6693130	6693978	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000176:15;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6693979	6694144	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000176:16;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6693979	6694144	.	+	1	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000176:11;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6694145	6696800	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000176:16;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6696801	6696902	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000176:17;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6696801	6696902	.	+	0	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000176:12;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6696903	6698183	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000176:17;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6698184	6698395	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000176:18;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6698184	6698204	.	+	0	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000176:13;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	6698202	6698204	.	+	0	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000176;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=stop_codon:HG003_chrY_T0000176;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6517409	6698395	100	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_G0000055;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=HG003_chrY_T0000177;Name=TBL1Y
HG003_chrY	CAT	exon	6517409	6517694	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000177:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6517695	6518799	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000177:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6518800	6518884	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000177:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6518885	6602519	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000177:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6602520	6602614	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000177:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6602615	6628163	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000177:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6628164	6628252	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000177:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6628253	6631748	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000177:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6631749	6631856	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000177:4;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6631799	6631856	.	+	0	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000177:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	6631799	6631801	.	+	0	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=start_codon:HG003_chrY_T0000177;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6631857	6649692	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000177:4;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6649693	6649838	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000177:5;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6649693	6649838	.	+	2	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000177:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6649839	6670611	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000177:5;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6670612	6670864	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000177:6;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6670612	6670864	.	+	0	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000177:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6670865	6676910	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000177:6;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6676911	6677043	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000177:7;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6676911	6677043	.	+	2	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000177:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6677044	6677434	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000177:7;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6677435	6677576	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000177:8;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6677435	6677576	.	+	1	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000177:4;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6677577	6678274	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000177:8;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6678275	6678338	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000177:9;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6678275	6678338	.	+	0	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000177:5;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6678339	6678447	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000177:9;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6678448	6678545	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000177:10;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6678448	6678545	.	+	2	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000177:6;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6678546	6681274	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000177:10;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6681275	6681335	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000177:11;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6681275	6681335	.	+	0	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000177:7;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6681336	6687445	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000177:11;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6687446	6687567	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000177:12;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6687446	6687567	.	+	2	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000177:8;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6687568	6692609	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000177:12;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6692610	6692684	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000177:13;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6692610	6692684	.	+	0	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000177:9;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6692685	6693001	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000177:13;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6693002	6693129	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000177:14;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6693002	6693129	.	+	0	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000177:10;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6693130	6693978	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000177:14;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6693979	6694144	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000177:15;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6693979	6694144	.	+	1	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000177:11;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6694145	6696800	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000177:15;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6696801	6696902	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000177:16;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6696801	6696902	.	+	0	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000177:12;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6696903	6698183	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000177:16;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6698184	6698395	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000177:17;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6698184	6698204	.	+	0	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000177:13;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	6698202	6698204	.	+	0	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000177;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=stop_codon:HG003_chrY_T0000177;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6517409	6698395	100	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_G0000055;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=HG003_chrY_T0000178;Name=TBL1Y
HG003_chrY	CAT	exon	6517409	6517694	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000178:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6517695	6518799	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000178:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6518800	6518884	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000178:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6518885	6584923	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000178:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6584924	6584954	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000178:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6584955	6628163	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000178:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6628164	6628252	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000178:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6628253	6631748	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000178:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6631749	6631856	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000178:4;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6631799	6631856	.	+	0	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000178:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	6631799	6631801	.	+	0	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=start_codon:HG003_chrY_T0000178;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6631857	6649692	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000178:4;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6649693	6649838	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000178:5;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6649693	6649838	.	+	2	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000178:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6649839	6670611	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000178:5;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6670612	6670864	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000178:6;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6670612	6670864	.	+	0	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000178:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6670865	6676910	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000178:6;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6676911	6677043	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000178:7;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6676911	6677043	.	+	2	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000178:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6677044	6677434	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000178:7;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6677435	6677576	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000178:8;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6677435	6677576	.	+	1	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000178:4;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6677577	6678274	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000178:8;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6678275	6678338	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000178:9;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6678275	6678338	.	+	0	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000178:5;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6678339	6678447	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000178:9;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6678448	6678545	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000178:10;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6678448	6678545	.	+	2	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000178:6;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6678546	6681274	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000178:10;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6681275	6681335	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000178:11;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6681275	6681335	.	+	0	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000178:7;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6681336	6687445	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000178:11;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6687446	6687567	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000178:12;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6687446	6687567	.	+	2	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000178:8;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6687568	6692609	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000178:12;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6692610	6692684	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000178:13;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6692610	6692684	.	+	0	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000178:9;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6692685	6693001	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000178:13;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6693002	6693129	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000178:14;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6693002	6693129	.	+	0	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000178:10;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6693130	6693978	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000178:14;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6693979	6694144	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000178:15;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6693979	6694144	.	+	1	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000178:11;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6694145	6696800	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000178:15;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6696801	6696902	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000178:16;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6696801	6696902	.	+	0	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000178:12;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6696903	6698183	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000178:16;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6698184	6698395	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000178:17;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6698184	6698204	.	+	0	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000178:13;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	6698202	6698204	.	+	0	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000178;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=stop_codon:HG003_chrY_T0000178;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6517409	6698395	100	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_G0000055;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=HG003_chrY_T0000179;Name=TBL1Y
HG003_chrY	CAT	exon	6517409	6517694	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000179;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000179:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6517695	6628163	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000179;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000179:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6628164	6628252	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000179;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000179:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6628253	6631748	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000179;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000179:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6631749	6631856	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000179;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000179:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6631799	6631856	.	+	0	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000179;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000179:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	6631799	6631801	.	+	0	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000179;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=start_codon:HG003_chrY_T0000179;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6631857	6649692	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000179;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000179:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6649693	6649838	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000179;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000179:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6649693	6649838	.	+	2	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000179;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000179:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6649839	6670611	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000179;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000179:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6670612	6670864	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000179;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000179:4;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6670612	6670864	.	+	0	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000179;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000179:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6670865	6676910	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000179;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000179:4;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6676911	6677043	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000179;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000179:5;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6676911	6677043	.	+	2	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000179;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000179:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6677044	6677434	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000179;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000179:5;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6677435	6677576	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000179;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000179:6;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6677435	6677576	.	+	1	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000179;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000179:4;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6677577	6678274	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000179;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000179:6;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6678275	6678338	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000179;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000179:7;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6678275	6678338	.	+	0	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000179;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000179:5;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6678339	6678447	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000179;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000179:7;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6678448	6678545	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000179;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000179:8;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6678448	6678545	.	+	2	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000179;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000179:6;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6678546	6681274	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000179;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000179:8;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6681275	6681335	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000179;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000179:9;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6681275	6681335	.	+	0	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000179;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000179:7;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6681336	6687445	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000179;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000179:9;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6687446	6687567	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000179;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000179:10;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6687446	6687567	.	+	2	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000179;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000179:8;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6687568	6692609	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000179;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000179:10;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6692610	6692684	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000179;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000179:11;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6692610	6692684	.	+	0	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000179;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000179:9;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6692685	6693001	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000179;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000179:11;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6693002	6693129	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000179;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000179:12;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6693002	6693129	.	+	0	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000179;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000179:10;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6693130	6693978	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000179;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000179:12;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6693979	6694144	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000179;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000179:13;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6693979	6694144	.	+	1	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000179;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000179:11;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6694145	6696800	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000179;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000179:13;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6696801	6696902	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000179;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000179:14;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6696801	6696902	.	+	0	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000179;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000179:12;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6696903	6698183	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000179;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000179:14;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6698184	6698395	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000179;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000179:15;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6698184	6698204	.	+	0	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000179;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000179:13;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	6698202	6698204	.	+	0	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000179;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=stop_codon:HG003_chrY_T0000179;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6517409	6712400	100	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_G0000055;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=HG003_chrY_T0000180;Name=TBL1Y
HG003_chrY	CAT	exon	6517409	6517694	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000180;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000180:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6517695	6628163	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000180;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000180:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6628164	6628252	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000180;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000180:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6628253	6631748	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000180;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000180:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6631749	6631856	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000180;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000180:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6631799	6631856	.	+	0	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000180;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000180:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	6631799	6631801	.	+	0	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000180;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=start_codon:HG003_chrY_T0000180;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6631857	6649692	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000180;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000180:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6649693	6649838	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000180;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000180:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6649693	6649838	.	+	2	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000180;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000180:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6649839	6670611	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000180;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000180:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6670612	6670864	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000180;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000180:4;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6670612	6670864	.	+	0	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000180;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000180:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6670865	6676910	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000180;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000180:4;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6676911	6677043	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000180;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000180:5;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6676911	6677043	.	+	2	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000180;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000180:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6677044	6677434	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000180;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000180:5;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6677435	6677576	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000180;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000180:6;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6677435	6677576	.	+	1	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000180;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000180:4;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6677577	6678274	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000180;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000180:6;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6678275	6678338	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000180;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000180:7;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6678275	6678338	.	+	0	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000180;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000180:5;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6678339	6678447	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000180;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000180:7;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6678448	6678545	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000180;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000180:8;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6678448	6678545	.	+	2	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000180;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000180:6;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6678546	6681274	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000180;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000180:8;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6681275	6681335	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000180;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000180:9;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6681275	6681335	.	+	0	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000180;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000180:7;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6681336	6687445	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000180;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000180:9;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6687446	6687567	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000180;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000180:10;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6687446	6687567	.	+	2	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000180;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000180:8;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6687568	6692609	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000180;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000180:10;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6692610	6692684	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000180;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000180:11;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6692610	6692684	.	+	0	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000180;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000180:9;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6692685	6693001	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000180;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000180:11;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6693002	6693129	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000180;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000180:12;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6693002	6693129	.	+	0	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000180;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000180:10;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6693130	6693978	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000180;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000180:12;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6693979	6694144	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000180;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000180:13;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6693979	6694144	.	+	1	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000180;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000180:11;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6694145	6696800	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000180;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000180:13;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6696801	6696902	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000180;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000180:14;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6696801	6696902	.	+	0	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000180;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000180:12;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6696903	6707496	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000180;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000180:14;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6707497	6712400	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000180;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000180:15;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6707497	6707682	.	+	0	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000180;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000180:13;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	6707680	6707682	.	+	0	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000180;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=stop_codon:HG003_chrY_T0000180;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6517409	6712400	100	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_G0000055;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=HG003_chrY_T0000181;Name=TBL1Y
HG003_chrY	CAT	exon	6517409	6517694	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000181:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6517695	6518799	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000181:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6518800	6518884	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000181:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6518885	6584923	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000181:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6584924	6584954	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000181:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6584955	6628163	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000181:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6628164	6628252	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000181:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6628253	6631748	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000181:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6631749	6631856	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000181:4;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6631799	6631856	.	+	0	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000181:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	6631799	6631801	.	+	0	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=start_codon:HG003_chrY_T0000181;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6631857	6649692	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000181:4;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6649693	6649838	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000181:5;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6649693	6649838	.	+	2	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000181:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6649839	6670611	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000181:5;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6670612	6670864	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000181:6;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6670612	6670864	.	+	0	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000181:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6670865	6676910	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000181:6;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6676911	6677043	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000181:7;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6676911	6677043	.	+	2	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000181:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6677044	6677434	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000181:7;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6677435	6677576	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000181:8;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6677435	6677576	.	+	1	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000181:4;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6677577	6678274	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000181:8;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6678275	6678338	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000181:9;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6678275	6678338	.	+	0	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000181:5;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6678339	6678447	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000181:9;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6678448	6678545	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000181:10;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6678448	6678545	.	+	2	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000181:6;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6678546	6681274	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000181:10;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6681275	6681335	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000181:11;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6681275	6681335	.	+	0	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000181:7;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6681336	6687445	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000181:11;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6687446	6687567	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000181:12;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6687446	6687567	.	+	2	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000181:8;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6687568	6692609	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000181:12;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6692610	6692684	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000181:13;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6692610	6692684	.	+	0	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000181:9;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6692685	6693001	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000181:13;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6693002	6693129	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000181:14;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6693002	6693129	.	+	0	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000181:10;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6693130	6693978	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000181:14;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6693979	6694144	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000181:15;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6693979	6694144	.	+	1	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000181:11;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6694145	6696800	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000181:15;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6696801	6696902	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000181:16;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6696801	6696902	.	+	0	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000181:12;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6696903	6707496	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000181:16;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6707497	6707562	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000181:17;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6707497	6707562	.	+	0	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000181:13;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6707563	6712109	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000181:17;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6712110	6712400	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000181:18;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6712110	6712118	.	+	0	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000181:14;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	6712116	6712118	.	+	0	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000181;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=stop_codon:HG003_chrY_T0000181;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6517409	6712400	100	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_G0000055;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=HG003_chrY_T0000182;Name=TBL1Y
HG003_chrY	CAT	exon	6517409	6517694	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000182;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000182:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6517695	6518799	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000182;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000182:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6518800	6518884	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000182;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000182:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6518885	6584923	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000182;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000182:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6584924	6584954	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000182;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000182:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6584955	6628163	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000182;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000182:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6628164	6628252	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000182;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000182:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6628253	6631748	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000182;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000182:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6631749	6631856	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000182;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000182:4;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6631799	6631856	.	+	0	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000182;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000182:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	6631799	6631801	.	+	0	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000182;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=start_codon:HG003_chrY_T0000182;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6631857	6649692	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000182;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000182:4;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6649693	6649838	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000182;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000182:5;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6649693	6649838	.	+	2	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000182;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000182:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6649839	6670611	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000182;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000182:5;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6670612	6670864	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000182;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000182:6;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6670612	6670864	.	+	0	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000182;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000182:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6670865	6676910	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000182;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000182:6;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6676911	6677043	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000182;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000182:7;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6676911	6677043	.	+	2	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000182;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000182:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6677044	6677434	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000182;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000182:7;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6677435	6677576	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000182;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000182:8;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6677435	6677576	.	+	1	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000182;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000182:4;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6677577	6678274	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000182;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000182:8;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6678275	6678338	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000182;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000182:9;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6678275	6678338	.	+	0	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000182;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000182:5;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6678339	6678447	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000182;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000182:9;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6678448	6678545	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000182;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000182:10;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6678448	6678545	.	+	2	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000182;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000182:6;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6678546	6681274	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000182;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000182:10;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6681275	6681335	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000182;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000182:11;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6681275	6681335	.	+	0	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000182;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000182:7;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6681336	6687445	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000182;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000182:11;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6687446	6687567	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000182;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000182:12;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6687446	6687567	.	+	2	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000182;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000182:8;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6687568	6692609	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000182;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000182:12;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6692610	6692684	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000182;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000182:13;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6692610	6692684	.	+	0	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000182;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000182:9;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6692685	6693001	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000182;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000182:13;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6693002	6693129	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000182;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000182:14;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6693002	6693129	.	+	0	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000182;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000182:10;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6693130	6693998	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000182;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000182:14;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6693999	6712400	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000182;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000182:15;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6693999	6694104	.	+	1	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000182;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000182:11;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	6694102	6694104	.	+	0	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000182;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=stop_codon:HG003_chrY_T0000182;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6517409	6712400	100	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_G0000055;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=HG003_chrY_T0000183;Name=TBL1Y
HG003_chrY	CAT	exon	6517409	6517694	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000183;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000183:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6517695	6628163	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000183;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000183:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6628164	6628252	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000183;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000183:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6628253	6631748	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000183;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000183:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6631749	6631856	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000183;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000183:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6631799	6631856	.	+	0	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000183;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000183:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	6631799	6631801	.	+	0	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000183;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=start_codon:HG003_chrY_T0000183;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6631857	6649692	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000183;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000183:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6649693	6649838	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000183;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000183:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6649693	6649838	.	+	2	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000183;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000183:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6649839	6670611	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000183;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000183:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6670612	6670864	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000183;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000183:4;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6670612	6670864	.	+	0	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000183;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000183:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6670865	6676910	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000183;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000183:4;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6676911	6677043	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000183;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000183:5;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6676911	6677043	.	+	2	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000183;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000183:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6677044	6677434	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000183;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000183:5;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6677435	6677576	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000183;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000183:6;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6677435	6677576	.	+	1	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000183;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000183:4;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6677577	6678274	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000183;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000183:6;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6678275	6678338	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000183;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000183:7;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6678275	6678338	.	+	0	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000183;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000183:5;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6678339	6678447	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000183;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000183:7;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6678448	6678545	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000183;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000183:8;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6678448	6678545	.	+	2	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000183;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000183:6;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6678546	6681274	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000183;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000183:8;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6681275	6681335	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000183;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000183:9;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6681275	6681335	.	+	0	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000183;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000183:7;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6681336	6687445	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000183;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000183:9;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6687446	6687567	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000183;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000183:10;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6687446	6687567	.	+	2	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000183;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000183:8;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6687568	6692609	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000183;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000183:10;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6692610	6692684	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000183;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000183:11;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6692610	6692684	.	+	0	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000183;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000183:9;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6692685	6693001	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000183;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000183:11;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6693002	6693129	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000183;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000183:12;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6693002	6693129	.	+	0	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000183;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000183:10;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6693130	6693998	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000183;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000183:12;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6693999	6712400	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000183;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000183:13;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6693999	6694104	.	+	1	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000183;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000183:11;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	6694102	6694104	.	+	0	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000183;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=stop_codon:HG003_chrY_T0000183;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6649324	6698395	100	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_G0000055;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=HG003_chrY_T0000184;Name=TBL1Y
HG003_chrY	CAT	exon	6649324	6649838	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000184;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000184:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6649593	6649838	.	+	0	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000184;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000184:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	6649593	6649595	.	+	0	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000184;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=start_codon:HG003_chrY_T0000184;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6649839	6670611	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000184;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000184:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6670612	6670864	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000184;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000184:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6670612	6670864	.	+	0	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000184;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000184:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6670865	6676910	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000184;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000184:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6676911	6677043	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000184;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000184:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6676911	6677043	.	+	2	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000184;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000184:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6677044	6677434	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000184;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000184:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6677435	6677576	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000184;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000184:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6677435	6677576	.	+	1	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000184;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000184:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6677577	6678274	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000184;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000184:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6678275	6678338	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000184;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000184:4;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6678275	6678338	.	+	0	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000184;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000184:4;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6678339	6678447	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000184;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000184:4;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6678448	6678545	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000184;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000184:5;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6678448	6678545	.	+	2	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000184;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000184:5;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6678546	6681274	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000184;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000184:5;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6681275	6681335	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000184;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000184:6;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6681275	6681335	.	+	0	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000184;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000184:6;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6681336	6687445	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000184;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000184:6;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6687446	6687567	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000184;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000184:7;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6687446	6687567	.	+	2	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000184;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000184:7;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6687568	6692609	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000184;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000184:7;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6692610	6692684	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000184;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000184:8;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6692610	6692684	.	+	0	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000184;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000184:8;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6692685	6693001	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000184;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000184:8;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6693002	6693129	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000184;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000184:9;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6693002	6693129	.	+	0	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000184;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000184:9;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6693130	6693978	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000184;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000184:9;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6693979	6694144	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000184;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000184:10;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6693979	6694144	.	+	1	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000184;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000184:10;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6694145	6696800	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000184;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000184:10;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6696801	6696902	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000184;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000184:11;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6696801	6696902	.	+	0	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000184;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000184:11;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6696903	6698183	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000184;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000184:11;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6698184	6698395	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000184;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000184:12;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6698184	6698204	.	+	0	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000184;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000184:12;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	6698202	6698204	.	+	0	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000184;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=stop_codon:HG003_chrY_T0000184;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	6880679	6988250	.	+	.	source_gene_common_name=PRKY;source_gene=hg002_chrY_paternal_93;alternative_source_transcripts=hg002_chrY_paternal_93.1,hg002_chrY_paternal_93.1;gene_id=HG003_chrY_G0000056;gene_biotype=transcribed_pseudogene;gene_name=PRKY;gene_sources=liftoff;ID=HG003_chrY_G0000056;Name=PRKY
HG003_chrY	CAT	transcript	6880679	6988250	1000	+	.	source_transcript=hg002_chrY_paternal_93.1;source_transcript_name=hg002_chrY_paternal_93.1;source_gene=hg002_chrY_paternal_93;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_93;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_93.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_93.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;alternative_source_transcripts=hg002_chrY_paternal_93.1,hg002_chrY_paternal_93.1;transcript_id=HG003_chrY_T0000185;gene_id=HG003_chrY_G0000056;Parent=HG003_chrY_G0000056;transcript_name=hg002_chrY_paternal_93.1;gene_name=PRKY;ID=HG003_chrY_T0000185;Name=PRKY
HG003_chrY	CAT	exon	6880679	6881185	.	+	.	source_transcript=hg002_chrY_paternal_93.1;source_transcript_name=hg002_chrY_paternal_93.1;source_gene=hg002_chrY_paternal_93;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_93;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_93.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_93.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;alternative_source_transcripts=hg002_chrY_paternal_93.1,hg002_chrY_paternal_93.1;transcript_id=HG003_chrY_T0000185;gene_id=HG003_chrY_G0000056;Parent=HG003_chrY_T0000185;transcript_name=hg002_chrY_paternal_93.1;gene_name=PRKY;ID=exon:HG003_chrY_T0000185:0;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6881186	6910639	.	+	.	source_transcript=hg002_chrY_paternal_93.1;source_transcript_name=hg002_chrY_paternal_93.1;source_gene=hg002_chrY_paternal_93;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_93;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_93.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_93.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;alternative_source_transcripts=hg002_chrY_paternal_93.1,hg002_chrY_paternal_93.1;transcript_id=HG003_chrY_T0000185;gene_id=HG003_chrY_G0000056;Parent=HG003_chrY_T0000185;transcript_name=hg002_chrY_paternal_93.1;gene_name=PRKY;ID=intron:HG003_chrY_T0000185:0;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6910640	6910808	.	+	.	source_transcript=hg002_chrY_paternal_93.1;source_transcript_name=hg002_chrY_paternal_93.1;source_gene=hg002_chrY_paternal_93;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_93;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_93.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_93.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;alternative_source_transcripts=hg002_chrY_paternal_93.1,hg002_chrY_paternal_93.1;transcript_id=HG003_chrY_T0000185;gene_id=HG003_chrY_G0000056;Parent=HG003_chrY_T0000185;transcript_name=hg002_chrY_paternal_93.1;gene_name=PRKY;ID=exon:HG003_chrY_T0000185:1;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6910809	6932609	.	+	.	source_transcript=hg002_chrY_paternal_93.1;source_transcript_name=hg002_chrY_paternal_93.1;source_gene=hg002_chrY_paternal_93;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_93;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_93.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_93.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;alternative_source_transcripts=hg002_chrY_paternal_93.1,hg002_chrY_paternal_93.1;transcript_id=HG003_chrY_T0000185;gene_id=HG003_chrY_G0000056;Parent=HG003_chrY_T0000185;transcript_name=hg002_chrY_paternal_93.1;gene_name=PRKY;ID=intron:HG003_chrY_T0000185:1;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6932610	6932873	.	+	.	source_transcript=hg002_chrY_paternal_93.1;source_transcript_name=hg002_chrY_paternal_93.1;source_gene=hg002_chrY_paternal_93;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_93;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_93.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_93.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;alternative_source_transcripts=hg002_chrY_paternal_93.1,hg002_chrY_paternal_93.1;transcript_id=HG003_chrY_T0000185;gene_id=HG003_chrY_G0000056;Parent=HG003_chrY_T0000185;transcript_name=hg002_chrY_paternal_93.1;gene_name=PRKY;ID=exon:HG003_chrY_T0000185:2;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6932874	6947818	.	+	.	source_transcript=hg002_chrY_paternal_93.1;source_transcript_name=hg002_chrY_paternal_93.1;source_gene=hg002_chrY_paternal_93;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_93;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_93.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_93.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;alternative_source_transcripts=hg002_chrY_paternal_93.1,hg002_chrY_paternal_93.1;transcript_id=HG003_chrY_T0000185;gene_id=HG003_chrY_G0000056;Parent=HG003_chrY_T0000185;transcript_name=hg002_chrY_paternal_93.1;gene_name=PRKY;ID=intron:HG003_chrY_T0000185:2;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6947819	6947938	.	+	.	source_transcript=hg002_chrY_paternal_93.1;source_transcript_name=hg002_chrY_paternal_93.1;source_gene=hg002_chrY_paternal_93;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_93;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_93.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_93.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;alternative_source_transcripts=hg002_chrY_paternal_93.1,hg002_chrY_paternal_93.1;transcript_id=HG003_chrY_T0000185;gene_id=HG003_chrY_G0000056;Parent=HG003_chrY_T0000185;transcript_name=hg002_chrY_paternal_93.1;gene_name=PRKY;ID=exon:HG003_chrY_T0000185:3;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6947939	6962835	.	+	.	source_transcript=hg002_chrY_paternal_93.1;source_transcript_name=hg002_chrY_paternal_93.1;source_gene=hg002_chrY_paternal_93;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_93;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_93.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_93.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;alternative_source_transcripts=hg002_chrY_paternal_93.1,hg002_chrY_paternal_93.1;transcript_id=HG003_chrY_T0000185;gene_id=HG003_chrY_G0000056;Parent=HG003_chrY_T0000185;transcript_name=hg002_chrY_paternal_93.1;gene_name=PRKY;ID=intron:HG003_chrY_T0000185:3;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6962836	6962931	.	+	.	source_transcript=hg002_chrY_paternal_93.1;source_transcript_name=hg002_chrY_paternal_93.1;source_gene=hg002_chrY_paternal_93;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_93;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_93.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_93.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;alternative_source_transcripts=hg002_chrY_paternal_93.1,hg002_chrY_paternal_93.1;transcript_id=HG003_chrY_T0000185;gene_id=HG003_chrY_G0000056;Parent=HG003_chrY_T0000185;transcript_name=hg002_chrY_paternal_93.1;gene_name=PRKY;ID=exon:HG003_chrY_T0000185:4;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6962932	6974058	.	+	.	source_transcript=hg002_chrY_paternal_93.1;source_transcript_name=hg002_chrY_paternal_93.1;source_gene=hg002_chrY_paternal_93;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_93;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_93.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_93.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;alternative_source_transcripts=hg002_chrY_paternal_93.1,hg002_chrY_paternal_93.1;transcript_id=HG003_chrY_T0000185;gene_id=HG003_chrY_G0000056;Parent=HG003_chrY_T0000185;transcript_name=hg002_chrY_paternal_93.1;gene_name=PRKY;ID=intron:HG003_chrY_T0000185:4;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6974059	6974136	.	+	.	source_transcript=hg002_chrY_paternal_93.1;source_transcript_name=hg002_chrY_paternal_93.1;source_gene=hg002_chrY_paternal_93;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_93;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_93.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_93.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;alternative_source_transcripts=hg002_chrY_paternal_93.1,hg002_chrY_paternal_93.1;transcript_id=HG003_chrY_T0000185;gene_id=HG003_chrY_G0000056;Parent=HG003_chrY_T0000185;transcript_name=hg002_chrY_paternal_93.1;gene_name=PRKY;ID=exon:HG003_chrY_T0000185:5;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6974137	6978445	.	+	.	source_transcript=hg002_chrY_paternal_93.1;source_transcript_name=hg002_chrY_paternal_93.1;source_gene=hg002_chrY_paternal_93;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_93;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_93.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_93.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;alternative_source_transcripts=hg002_chrY_paternal_93.1,hg002_chrY_paternal_93.1;transcript_id=HG003_chrY_T0000185;gene_id=HG003_chrY_G0000056;Parent=HG003_chrY_T0000185;transcript_name=hg002_chrY_paternal_93.1;gene_name=PRKY;ID=intron:HG003_chrY_T0000185:5;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6978446	6978592	.	+	.	source_transcript=hg002_chrY_paternal_93.1;source_transcript_name=hg002_chrY_paternal_93.1;source_gene=hg002_chrY_paternal_93;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_93;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_93.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_93.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;alternative_source_transcripts=hg002_chrY_paternal_93.1,hg002_chrY_paternal_93.1;transcript_id=HG003_chrY_T0000185;gene_id=HG003_chrY_G0000056;Parent=HG003_chrY_T0000185;transcript_name=hg002_chrY_paternal_93.1;gene_name=PRKY;ID=exon:HG003_chrY_T0000185:6;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6978593	6982414	.	+	.	source_transcript=hg002_chrY_paternal_93.1;source_transcript_name=hg002_chrY_paternal_93.1;source_gene=hg002_chrY_paternal_93;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_93;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_93.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_93.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;alternative_source_transcripts=hg002_chrY_paternal_93.1,hg002_chrY_paternal_93.1;transcript_id=HG003_chrY_T0000185;gene_id=HG003_chrY_G0000056;Parent=HG003_chrY_T0000185;transcript_name=hg002_chrY_paternal_93.1;gene_name=PRKY;ID=intron:HG003_chrY_T0000185:6;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6982415	6988250	.	+	.	source_transcript=hg002_chrY_paternal_93.1;source_transcript_name=hg002_chrY_paternal_93.1;source_gene=hg002_chrY_paternal_93;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_93;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_93.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_93.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;alternative_source_transcripts=hg002_chrY_paternal_93.1,hg002_chrY_paternal_93.1;transcript_id=HG003_chrY_T0000185;gene_id=HG003_chrY_G0000056;Parent=HG003_chrY_T0000185;transcript_name=hg002_chrY_paternal_93.1;gene_name=PRKY;ID=exon:HG003_chrY_T0000185:7;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	7065312	7127327	.	+	.	source_gene_common_name=LOC107987338;source_gene=hg002_chrY_paternal_97;alternative_source_transcripts=hg002_chrY_paternal_97.1,hg002_chrY_paternal_97.1;gene_id=HG003_chrY_G0000057;gene_biotype=lncRNA;gene_name=LOC107987338;gene_sources=liftoff;ID=HG003_chrY_G0000057;Name=LOC107987338
HG003_chrY	CAT	transcript	7065312	7127327	1000	+	.	source_transcript=hg002_chrY_paternal_97.1;source_transcript_name=hg002_chrY_paternal_97.1;source_gene=hg002_chrY_paternal_97;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_97;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_97.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_97.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987338;alternative_source_transcripts=hg002_chrY_paternal_97.1,hg002_chrY_paternal_97.1;transcript_id=HG003_chrY_T0000186;gene_id=HG003_chrY_G0000057;Parent=HG003_chrY_G0000057;transcript_name=hg002_chrY_paternal_97.1;gene_name=LOC107987338;ID=HG003_chrY_T0000186;Name=LOC107987338
HG003_chrY	CAT	exon	7065312	7065425	.	+	.	source_transcript=hg002_chrY_paternal_97.1;source_transcript_name=hg002_chrY_paternal_97.1;source_gene=hg002_chrY_paternal_97;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_97;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_97.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_97.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987338;alternative_source_transcripts=hg002_chrY_paternal_97.1,hg002_chrY_paternal_97.1;transcript_id=HG003_chrY_T0000186;gene_id=HG003_chrY_G0000057;Parent=HG003_chrY_T0000186;transcript_name=hg002_chrY_paternal_97.1;gene_name=LOC107987338;ID=exon:HG003_chrY_T0000186:0;Name=LOC107987338;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7065426	7107721	.	+	.	source_transcript=hg002_chrY_paternal_97.1;source_transcript_name=hg002_chrY_paternal_97.1;source_gene=hg002_chrY_paternal_97;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_97;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_97.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_97.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987338;alternative_source_transcripts=hg002_chrY_paternal_97.1,hg002_chrY_paternal_97.1;transcript_id=HG003_chrY_T0000186;gene_id=HG003_chrY_G0000057;Parent=HG003_chrY_T0000186;transcript_name=hg002_chrY_paternal_97.1;gene_name=LOC107987338;ID=intron:HG003_chrY_T0000186:0;Name=LOC107987338;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7107722	7107880	.	+	.	source_transcript=hg002_chrY_paternal_97.1;source_transcript_name=hg002_chrY_paternal_97.1;source_gene=hg002_chrY_paternal_97;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_97;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_97.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_97.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987338;alternative_source_transcripts=hg002_chrY_paternal_97.1,hg002_chrY_paternal_97.1;transcript_id=HG003_chrY_T0000186;gene_id=HG003_chrY_G0000057;Parent=HG003_chrY_T0000186;transcript_name=hg002_chrY_paternal_97.1;gene_name=LOC107987338;ID=exon:HG003_chrY_T0000186:1;Name=LOC107987338;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7107881	7125670	.	+	.	source_transcript=hg002_chrY_paternal_97.1;source_transcript_name=hg002_chrY_paternal_97.1;source_gene=hg002_chrY_paternal_97;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_97;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_97.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_97.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987338;alternative_source_transcripts=hg002_chrY_paternal_97.1,hg002_chrY_paternal_97.1;transcript_id=HG003_chrY_T0000186;gene_id=HG003_chrY_G0000057;Parent=HG003_chrY_T0000186;transcript_name=hg002_chrY_paternal_97.1;gene_name=LOC107987338;ID=intron:HG003_chrY_T0000186:1;Name=LOC107987338;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7125671	7125779	.	+	.	source_transcript=hg002_chrY_paternal_97.1;source_transcript_name=hg002_chrY_paternal_97.1;source_gene=hg002_chrY_paternal_97;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_97;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_97.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_97.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987338;alternative_source_transcripts=hg002_chrY_paternal_97.1,hg002_chrY_paternal_97.1;transcript_id=HG003_chrY_T0000186;gene_id=HG003_chrY_G0000057;Parent=HG003_chrY_T0000186;transcript_name=hg002_chrY_paternal_97.1;gene_name=LOC107987338;ID=exon:HG003_chrY_T0000186:2;Name=LOC107987338;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7125780	7126811	.	+	.	source_transcript=hg002_chrY_paternal_97.1;source_transcript_name=hg002_chrY_paternal_97.1;source_gene=hg002_chrY_paternal_97;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_97;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_97.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_97.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987338;alternative_source_transcripts=hg002_chrY_paternal_97.1,hg002_chrY_paternal_97.1;transcript_id=HG003_chrY_T0000186;gene_id=HG003_chrY_G0000057;Parent=HG003_chrY_T0000186;transcript_name=hg002_chrY_paternal_97.1;gene_name=LOC107987338;ID=intron:HG003_chrY_T0000186:2;Name=LOC107987338;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7126812	7127327	.	+	.	source_transcript=hg002_chrY_paternal_97.1;source_transcript_name=hg002_chrY_paternal_97.1;source_gene=hg002_chrY_paternal_97;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_97;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_97.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_97.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987338;alternative_source_transcripts=hg002_chrY_paternal_97.1,hg002_chrY_paternal_97.1;transcript_id=HG003_chrY_T0000186;gene_id=HG003_chrY_G0000057;Parent=HG003_chrY_T0000186;transcript_name=hg002_chrY_paternal_97.1;gene_name=LOC107987338;ID=exon:HG003_chrY_T0000186:3;Name=LOC107987338;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	7306406	7308296	.	-	.	source_gene_common_name=TTTY16;source_gene=hg002_chrY_paternal_101;alternative_source_transcripts=hg002_chrY_paternal_101.1,hg002_chrY_paternal_101.1;gene_id=HG003_chrY_G0000058;gene_biotype=lncRNA;gene_name=TTTY16;gene_sources=liftoff;ID=HG003_chrY_G0000058;Name=TTTY16
HG003_chrY	CAT	transcript	7306406	7308296	1000	-	.	source_transcript=hg002_chrY_paternal_101.1;source_transcript_name=hg002_chrY_paternal_101.1;source_gene=hg002_chrY_paternal_101;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_101;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_101.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_101.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;alternative_source_transcripts=hg002_chrY_paternal_101.1,hg002_chrY_paternal_101.1;transcript_id=HG003_chrY_T0000187;gene_id=HG003_chrY_G0000058;Parent=HG003_chrY_G0000058;transcript_name=hg002_chrY_paternal_101.1;gene_name=TTTY16;ID=HG003_chrY_T0000187;Name=TTTY16
HG003_chrY	CAT	exon	7306406	7306536	.	-	.	source_transcript=hg002_chrY_paternal_101.1;source_transcript_name=hg002_chrY_paternal_101.1;source_gene=hg002_chrY_paternal_101;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_101;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_101.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_101.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;alternative_source_transcripts=hg002_chrY_paternal_101.1,hg002_chrY_paternal_101.1;transcript_id=HG003_chrY_T0000187;gene_id=HG003_chrY_G0000058;Parent=HG003_chrY_T0000187;transcript_name=hg002_chrY_paternal_101.1;gene_name=TTTY16;ID=exon:HG003_chrY_T0000187:0;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7306537	7308235	.	-	.	source_transcript=hg002_chrY_paternal_101.1;source_transcript_name=hg002_chrY_paternal_101.1;source_gene=hg002_chrY_paternal_101;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_101;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_101.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_101.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;alternative_source_transcripts=hg002_chrY_paternal_101.1,hg002_chrY_paternal_101.1;transcript_id=HG003_chrY_T0000187;gene_id=HG003_chrY_G0000058;Parent=HG003_chrY_T0000187;transcript_name=hg002_chrY_paternal_101.1;gene_name=TTTY16;ID=intron:HG003_chrY_T0000187:0;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7308236	7308296	.	-	.	source_transcript=hg002_chrY_paternal_101.1;source_transcript_name=hg002_chrY_paternal_101.1;source_gene=hg002_chrY_paternal_101;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_101;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_101.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_101.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;alternative_source_transcripts=hg002_chrY_paternal_101.1,hg002_chrY_paternal_101.1;transcript_id=HG003_chrY_T0000187;gene_id=HG003_chrY_G0000058;Parent=HG003_chrY_T0000187;transcript_name=hg002_chrY_paternal_101.1;gene_name=TTTY16;ID=exon:HG003_chrY_T0000187:1;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	7389827	7420230	.	-	.	source_gene_common_name=LOC107987339;source_gene=hg002_chrY_paternal_103;alternative_source_transcripts=hg002_chrY_paternal_103.1,hg002_chrY_paternal_103.1;gene_id=HG003_chrY_G0000059;gene_biotype=lncRNA;gene_name=LOC107987339;gene_sources=liftoff;ID=HG003_chrY_G0000059;Name=LOC107987339
HG003_chrY	CAT	transcript	7389827	7420230	1000	-	.	source_transcript=hg002_chrY_paternal_103.1;source_transcript_name=hg002_chrY_paternal_103.1;source_gene=hg002_chrY_paternal_103;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_103;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_103.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_103.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987339;alternative_source_transcripts=hg002_chrY_paternal_103.1,hg002_chrY_paternal_103.1;transcript_id=HG003_chrY_T0000188;gene_id=HG003_chrY_G0000059;Parent=HG003_chrY_G0000059;transcript_name=hg002_chrY_paternal_103.1;gene_name=LOC107987339;ID=HG003_chrY_T0000188;Name=LOC107987339
HG003_chrY	CAT	exon	7389827	7389874	.	-	.	source_transcript=hg002_chrY_paternal_103.1;source_transcript_name=hg002_chrY_paternal_103.1;source_gene=hg002_chrY_paternal_103;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_103;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_103.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_103.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987339;alternative_source_transcripts=hg002_chrY_paternal_103.1,hg002_chrY_paternal_103.1;transcript_id=HG003_chrY_T0000188;gene_id=HG003_chrY_G0000059;Parent=HG003_chrY_T0000188;transcript_name=hg002_chrY_paternal_103.1;gene_name=LOC107987339;ID=exon:HG003_chrY_T0000188:0;Name=LOC107987339;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7389875	7415854	.	-	.	source_transcript=hg002_chrY_paternal_103.1;source_transcript_name=hg002_chrY_paternal_103.1;source_gene=hg002_chrY_paternal_103;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_103;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_103.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_103.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987339;alternative_source_transcripts=hg002_chrY_paternal_103.1,hg002_chrY_paternal_103.1;transcript_id=HG003_chrY_T0000188;gene_id=HG003_chrY_G0000059;Parent=HG003_chrY_T0000188;transcript_name=hg002_chrY_paternal_103.1;gene_name=LOC107987339;ID=intron:HG003_chrY_T0000188:0;Name=LOC107987339;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7415855	7415964	.	-	.	source_transcript=hg002_chrY_paternal_103.1;source_transcript_name=hg002_chrY_paternal_103.1;source_gene=hg002_chrY_paternal_103;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_103;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_103.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_103.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987339;alternative_source_transcripts=hg002_chrY_paternal_103.1,hg002_chrY_paternal_103.1;transcript_id=HG003_chrY_T0000188;gene_id=HG003_chrY_G0000059;Parent=HG003_chrY_T0000188;transcript_name=hg002_chrY_paternal_103.1;gene_name=LOC107987339;ID=exon:HG003_chrY_T0000188:1;Name=LOC107987339;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7415965	7419513	.	-	.	source_transcript=hg002_chrY_paternal_103.1;source_transcript_name=hg002_chrY_paternal_103.1;source_gene=hg002_chrY_paternal_103;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_103;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_103.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_103.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987339;alternative_source_transcripts=hg002_chrY_paternal_103.1,hg002_chrY_paternal_103.1;transcript_id=HG003_chrY_T0000188;gene_id=HG003_chrY_G0000059;Parent=HG003_chrY_T0000188;transcript_name=hg002_chrY_paternal_103.1;gene_name=LOC107987339;ID=intron:HG003_chrY_T0000188:1;Name=LOC107987339;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7419514	7420230	.	-	.	source_transcript=hg002_chrY_paternal_103.1;source_transcript_name=hg002_chrY_paternal_103.1;source_gene=hg002_chrY_paternal_103;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_103;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_103.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_103.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987339;alternative_source_transcripts=hg002_chrY_paternal_103.1,hg002_chrY_paternal_103.1;transcript_id=HG003_chrY_T0000188;gene_id=HG003_chrY_G0000059;Parent=HG003_chrY_T0000188;transcript_name=hg002_chrY_paternal_103.1;gene_name=LOC107987339;ID=exon:HG003_chrY_T0000188:2;Name=LOC107987339;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	7414375	7421043	.	+	.	source_gene_common_name=TTTY12;source_gene=hg002_chrY_paternal_104;alternative_source_transcripts=hg002_chrY_paternal_104.1,hg002_chrY_paternal_104.1;gene_id=HG003_chrY_G0000060;gene_biotype=lncRNA;gene_name=TTTY12;gene_sources=liftoff;ID=HG003_chrY_G0000060;Name=TTTY12
HG003_chrY	CAT	transcript	7414375	7421043	1000	+	.	source_transcript=hg002_chrY_paternal_104.1;source_transcript_name=hg002_chrY_paternal_104.1;source_gene=hg002_chrY_paternal_104;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_104;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_104.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_104.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=hg002_chrY_paternal_104.1,hg002_chrY_paternal_104.1;transcript_id=HG003_chrY_T0000189;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_G0000060;transcript_name=hg002_chrY_paternal_104.1;gene_name=TTTY12;ID=HG003_chrY_T0000189;Name=TTTY12
HG003_chrY	CAT	exon	7414375	7414422	.	+	.	source_transcript=hg002_chrY_paternal_104.1;source_transcript_name=hg002_chrY_paternal_104.1;source_gene=hg002_chrY_paternal_104;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_104;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_104.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_104.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=hg002_chrY_paternal_104.1,hg002_chrY_paternal_104.1;transcript_id=HG003_chrY_T0000189;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000189;transcript_name=hg002_chrY_paternal_104.1;gene_name=TTTY12;ID=exon:HG003_chrY_T0000189:0;Name=TTTY12;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7414423	7415283	.	+	.	source_transcript=hg002_chrY_paternal_104.1;source_transcript_name=hg002_chrY_paternal_104.1;source_gene=hg002_chrY_paternal_104;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_104;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_104.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_104.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=hg002_chrY_paternal_104.1,hg002_chrY_paternal_104.1;transcript_id=HG003_chrY_T0000189;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000189;transcript_name=hg002_chrY_paternal_104.1;gene_name=TTTY12;ID=intron:HG003_chrY_T0000189:0;Name=TTTY12;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7415284	7415439	.	+	.	source_transcript=hg002_chrY_paternal_104.1;source_transcript_name=hg002_chrY_paternal_104.1;source_gene=hg002_chrY_paternal_104;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_104;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_104.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_104.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=hg002_chrY_paternal_104.1,hg002_chrY_paternal_104.1;transcript_id=HG003_chrY_T0000189;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000189;transcript_name=hg002_chrY_paternal_104.1;gene_name=TTTY12;ID=exon:HG003_chrY_T0000189:1;Name=TTTY12;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7415440	7420220	.	+	.	source_transcript=hg002_chrY_paternal_104.1;source_transcript_name=hg002_chrY_paternal_104.1;source_gene=hg002_chrY_paternal_104;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_104;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_104.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_104.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=hg002_chrY_paternal_104.1,hg002_chrY_paternal_104.1;transcript_id=HG003_chrY_T0000189;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000189;transcript_name=hg002_chrY_paternal_104.1;gene_name=TTTY12;ID=intron:HG003_chrY_T0000189:1;Name=TTTY12;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7420221	7421043	.	+	.	source_transcript=hg002_chrY_paternal_104.1;source_transcript_name=hg002_chrY_paternal_104.1;source_gene=hg002_chrY_paternal_104;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_104;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_104.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_104.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=hg002_chrY_paternal_104.1,hg002_chrY_paternal_104.1;transcript_id=HG003_chrY_T0000189;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000189;transcript_name=hg002_chrY_paternal_104.1;gene_name=TTTY12;ID=exon:HG003_chrY_T0000189:2;Name=TTTY12;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	7414375	7421043	1000	+	.	source_transcript=hg002_chrY_paternal_104.2;source_transcript_name=hg002_chrY_paternal_104.1;source_gene=hg002_chrY_paternal_104;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_104;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_104.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_104.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=hg002_chrY_paternal_104.2,hg002_chrY_paternal_104.2;transcript_id=HG003_chrY_T0000190;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_G0000060;transcript_name=hg002_chrY_paternal_104.1;gene_name=TTTY12;ID=HG003_chrY_T0000190;Name=TTTY12
HG003_chrY	CAT	exon	7414375	7414422	.	+	.	source_transcript=hg002_chrY_paternal_104.2;source_transcript_name=hg002_chrY_paternal_104.1;source_gene=hg002_chrY_paternal_104;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_104;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_104.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_104.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=hg002_chrY_paternal_104.2,hg002_chrY_paternal_104.2;transcript_id=HG003_chrY_T0000190;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000190;transcript_name=hg002_chrY_paternal_104.1;gene_name=TTTY12;ID=exon:HG003_chrY_T0000190:0;Name=TTTY12;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7414423	7415283	.	+	.	source_transcript=hg002_chrY_paternal_104.2;source_transcript_name=hg002_chrY_paternal_104.1;source_gene=hg002_chrY_paternal_104;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_104;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_104.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_104.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=hg002_chrY_paternal_104.2,hg002_chrY_paternal_104.2;transcript_id=HG003_chrY_T0000190;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000190;transcript_name=hg002_chrY_paternal_104.1;gene_name=TTTY12;ID=intron:HG003_chrY_T0000190:0;Name=TTTY12;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7415284	7415439	.	+	.	source_transcript=hg002_chrY_paternal_104.2;source_transcript_name=hg002_chrY_paternal_104.1;source_gene=hg002_chrY_paternal_104;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_104;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_104.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_104.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=hg002_chrY_paternal_104.2,hg002_chrY_paternal_104.2;transcript_id=HG003_chrY_T0000190;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000190;transcript_name=hg002_chrY_paternal_104.1;gene_name=TTTY12;ID=exon:HG003_chrY_T0000190:1;Name=TTTY12;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7415440	7415903	.	+	.	source_transcript=hg002_chrY_paternal_104.2;source_transcript_name=hg002_chrY_paternal_104.1;source_gene=hg002_chrY_paternal_104;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_104;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_104.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_104.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=hg002_chrY_paternal_104.2,hg002_chrY_paternal_104.2;transcript_id=HG003_chrY_T0000190;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000190;transcript_name=hg002_chrY_paternal_104.1;gene_name=TTTY12;ID=intron:HG003_chrY_T0000190:1;Name=TTTY12;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7415904	7415985	.	+	.	source_transcript=hg002_chrY_paternal_104.2;source_transcript_name=hg002_chrY_paternal_104.1;source_gene=hg002_chrY_paternal_104;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_104;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_104.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_104.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=hg002_chrY_paternal_104.2,hg002_chrY_paternal_104.2;transcript_id=HG003_chrY_T0000190;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000190;transcript_name=hg002_chrY_paternal_104.1;gene_name=TTTY12;ID=exon:HG003_chrY_T0000190:2;Name=TTTY12;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7415986	7420220	.	+	.	source_transcript=hg002_chrY_paternal_104.2;source_transcript_name=hg002_chrY_paternal_104.1;source_gene=hg002_chrY_paternal_104;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_104;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_104.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_104.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=hg002_chrY_paternal_104.2,hg002_chrY_paternal_104.2;transcript_id=HG003_chrY_T0000190;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000190;transcript_name=hg002_chrY_paternal_104.1;gene_name=TTTY12;ID=intron:HG003_chrY_T0000190:2;Name=TTTY12;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7420221	7421043	.	+	.	source_transcript=hg002_chrY_paternal_104.2;source_transcript_name=hg002_chrY_paternal_104.1;source_gene=hg002_chrY_paternal_104;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_104;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_104.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_104.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=hg002_chrY_paternal_104.2,hg002_chrY_paternal_104.2;transcript_id=HG003_chrY_T0000190;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000190;transcript_name=hg002_chrY_paternal_104.1;gene_name=TTTY12;ID=exon:HG003_chrY_T0000190:3;Name=TTTY12;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	7441175	7469116	.	-	.	source_gene_common_name=LOC105377229;source_gene=hg002_chrY_paternal_105;alternative_source_transcripts=hg002_chrY_paternal_105.1,hg002_chrY_paternal_105.1;gene_id=HG003_chrY_G0000061;gene_biotype=lncRNA;gene_name=LOC105377229;gene_sources=liftoff;ID=HG003_chrY_G0000061;Name=LOC105377229
HG003_chrY	CAT	transcript	7441175	7469116	1000	-	.	source_transcript=hg002_chrY_paternal_105.1;source_transcript_name=hg002_chrY_paternal_105.1;source_gene=hg002_chrY_paternal_105;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_105;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_105.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_105.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377229;alternative_source_transcripts=hg002_chrY_paternal_105.1,hg002_chrY_paternal_105.1;transcript_id=HG003_chrY_T0000191;gene_id=HG003_chrY_G0000061;Parent=HG003_chrY_G0000061;transcript_name=hg002_chrY_paternal_105.1;gene_name=LOC105377229;ID=HG003_chrY_T0000191;Name=LOC105377229
HG003_chrY	CAT	exon	7441175	7442450	.	-	.	source_transcript=hg002_chrY_paternal_105.1;source_transcript_name=hg002_chrY_paternal_105.1;source_gene=hg002_chrY_paternal_105;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_105;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_105.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_105.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377229;alternative_source_transcripts=hg002_chrY_paternal_105.1,hg002_chrY_paternal_105.1;transcript_id=HG003_chrY_T0000191;gene_id=HG003_chrY_G0000061;Parent=HG003_chrY_T0000191;transcript_name=hg002_chrY_paternal_105.1;gene_name=LOC105377229;ID=exon:HG003_chrY_T0000191:0;Name=LOC105377229;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7442451	7442597	.	-	.	source_transcript=hg002_chrY_paternal_105.1;source_transcript_name=hg002_chrY_paternal_105.1;source_gene=hg002_chrY_paternal_105;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_105;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_105.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_105.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377229;alternative_source_transcripts=hg002_chrY_paternal_105.1,hg002_chrY_paternal_105.1;transcript_id=HG003_chrY_T0000191;gene_id=HG003_chrY_G0000061;Parent=HG003_chrY_T0000191;transcript_name=hg002_chrY_paternal_105.1;gene_name=LOC105377229;ID=intron:HG003_chrY_T0000191:0;Name=LOC105377229;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7442598	7442769	.	-	.	source_transcript=hg002_chrY_paternal_105.1;source_transcript_name=hg002_chrY_paternal_105.1;source_gene=hg002_chrY_paternal_105;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_105;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_105.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_105.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377229;alternative_source_transcripts=hg002_chrY_paternal_105.1,hg002_chrY_paternal_105.1;transcript_id=HG003_chrY_T0000191;gene_id=HG003_chrY_G0000061;Parent=HG003_chrY_T0000191;transcript_name=hg002_chrY_paternal_105.1;gene_name=LOC105377229;ID=exon:HG003_chrY_T0000191:1;Name=LOC105377229;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7442770	7443337	.	-	.	source_transcript=hg002_chrY_paternal_105.1;source_transcript_name=hg002_chrY_paternal_105.1;source_gene=hg002_chrY_paternal_105;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_105;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_105.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_105.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377229;alternative_source_transcripts=hg002_chrY_paternal_105.1,hg002_chrY_paternal_105.1;transcript_id=HG003_chrY_T0000191;gene_id=HG003_chrY_G0000061;Parent=HG003_chrY_T0000191;transcript_name=hg002_chrY_paternal_105.1;gene_name=LOC105377229;ID=intron:HG003_chrY_T0000191:1;Name=LOC105377229;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7443338	7443462	.	-	.	source_transcript=hg002_chrY_paternal_105.1;source_transcript_name=hg002_chrY_paternal_105.1;source_gene=hg002_chrY_paternal_105;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_105;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_105.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_105.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377229;alternative_source_transcripts=hg002_chrY_paternal_105.1,hg002_chrY_paternal_105.1;transcript_id=HG003_chrY_T0000191;gene_id=HG003_chrY_G0000061;Parent=HG003_chrY_T0000191;transcript_name=hg002_chrY_paternal_105.1;gene_name=LOC105377229;ID=exon:HG003_chrY_T0000191:2;Name=LOC105377229;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7443463	7469047	.	-	.	source_transcript=hg002_chrY_paternal_105.1;source_transcript_name=hg002_chrY_paternal_105.1;source_gene=hg002_chrY_paternal_105;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_105;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_105.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_105.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377229;alternative_source_transcripts=hg002_chrY_paternal_105.1,hg002_chrY_paternal_105.1;transcript_id=HG003_chrY_T0000191;gene_id=HG003_chrY_G0000061;Parent=HG003_chrY_T0000191;transcript_name=hg002_chrY_paternal_105.1;gene_name=LOC105377229;ID=intron:HG003_chrY_T0000191:2;Name=LOC105377229;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7469048	7469116	.	-	.	source_transcript=hg002_chrY_paternal_105.1;source_transcript_name=hg002_chrY_paternal_105.1;source_gene=hg002_chrY_paternal_105;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_105;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_105.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_105.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377229;alternative_source_transcripts=hg002_chrY_paternal_105.1,hg002_chrY_paternal_105.1;transcript_id=HG003_chrY_T0000191;gene_id=HG003_chrY_G0000061;Parent=HG003_chrY_T0000191;transcript_name=hg002_chrY_paternal_105.1;gene_name=LOC105377229;ID=exon:HG003_chrY_T0000191:3;Name=LOC105377229;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8005343	8017610	.	+	.	source_gene_common_name=LOC105377231;source_gene=hg002_chrY_paternal_124;alternative_source_transcripts=hg002_chrY_paternal_124.1,hg002_chrY_paternal_124.1;gene_id=HG003_chrY_G0000062;gene_biotype=lncRNA;gene_name=LOC105377231;gene_sources=liftoff;ID=HG003_chrY_G0000062;Name=LOC105377231
HG003_chrY	CAT	transcript	8005343	8017610	1000	+	.	source_transcript=hg002_chrY_paternal_124.1;source_transcript_name=hg002_chrY_paternal_124.1;source_gene=hg002_chrY_paternal_124;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_124;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_124.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_124.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377231;alternative_source_transcripts=hg002_chrY_paternal_124.1,hg002_chrY_paternal_124.1;transcript_id=HG003_chrY_T0000192;gene_id=HG003_chrY_G0000062;Parent=HG003_chrY_G0000062;transcript_name=hg002_chrY_paternal_124.1;gene_name=LOC105377231;ID=HG003_chrY_T0000192;Name=LOC105377231
HG003_chrY	CAT	exon	8005343	8005428	.	+	.	source_transcript=hg002_chrY_paternal_124.1;source_transcript_name=hg002_chrY_paternal_124.1;source_gene=hg002_chrY_paternal_124;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_124;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_124.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_124.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377231;alternative_source_transcripts=hg002_chrY_paternal_124.1,hg002_chrY_paternal_124.1;transcript_id=HG003_chrY_T0000192;gene_id=HG003_chrY_G0000062;Parent=HG003_chrY_T0000192;transcript_name=hg002_chrY_paternal_124.1;gene_name=LOC105377231;ID=exon:HG003_chrY_T0000192:0;Name=LOC105377231;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8005429	8013022	.	+	.	source_transcript=hg002_chrY_paternal_124.1;source_transcript_name=hg002_chrY_paternal_124.1;source_gene=hg002_chrY_paternal_124;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_124;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_124.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_124.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377231;alternative_source_transcripts=hg002_chrY_paternal_124.1,hg002_chrY_paternal_124.1;transcript_id=HG003_chrY_T0000192;gene_id=HG003_chrY_G0000062;Parent=HG003_chrY_T0000192;transcript_name=hg002_chrY_paternal_124.1;gene_name=LOC105377231;ID=intron:HG003_chrY_T0000192:0;Name=LOC105377231;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8013023	8013276	.	+	.	source_transcript=hg002_chrY_paternal_124.1;source_transcript_name=hg002_chrY_paternal_124.1;source_gene=hg002_chrY_paternal_124;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_124;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_124.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_124.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377231;alternative_source_transcripts=hg002_chrY_paternal_124.1,hg002_chrY_paternal_124.1;transcript_id=HG003_chrY_T0000192;gene_id=HG003_chrY_G0000062;Parent=HG003_chrY_T0000192;transcript_name=hg002_chrY_paternal_124.1;gene_name=LOC105377231;ID=exon:HG003_chrY_T0000192:1;Name=LOC105377231;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8013277	8013977	.	+	.	source_transcript=hg002_chrY_paternal_124.1;source_transcript_name=hg002_chrY_paternal_124.1;source_gene=hg002_chrY_paternal_124;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_124;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_124.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_124.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377231;alternative_source_transcripts=hg002_chrY_paternal_124.1,hg002_chrY_paternal_124.1;transcript_id=HG003_chrY_T0000192;gene_id=HG003_chrY_G0000062;Parent=HG003_chrY_T0000192;transcript_name=hg002_chrY_paternal_124.1;gene_name=LOC105377231;ID=intron:HG003_chrY_T0000192:1;Name=LOC105377231;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8013978	8014130	.	+	.	source_transcript=hg002_chrY_paternal_124.1;source_transcript_name=hg002_chrY_paternal_124.1;source_gene=hg002_chrY_paternal_124;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_124;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_124.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_124.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377231;alternative_source_transcripts=hg002_chrY_paternal_124.1,hg002_chrY_paternal_124.1;transcript_id=HG003_chrY_T0000192;gene_id=HG003_chrY_G0000062;Parent=HG003_chrY_T0000192;transcript_name=hg002_chrY_paternal_124.1;gene_name=LOC105377231;ID=exon:HG003_chrY_T0000192:2;Name=LOC105377231;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8014131	8017422	.	+	.	source_transcript=hg002_chrY_paternal_124.1;source_transcript_name=hg002_chrY_paternal_124.1;source_gene=hg002_chrY_paternal_124;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_124;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_124.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_124.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377231;alternative_source_transcripts=hg002_chrY_paternal_124.1,hg002_chrY_paternal_124.1;transcript_id=HG003_chrY_T0000192;gene_id=HG003_chrY_G0000062;Parent=HG003_chrY_T0000192;transcript_name=hg002_chrY_paternal_124.1;gene_name=LOC105377231;ID=intron:HG003_chrY_T0000192:2;Name=LOC105377231;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8017423	8017610	.	+	.	source_transcript=hg002_chrY_paternal_124.1;source_transcript_name=hg002_chrY_paternal_124.1;source_gene=hg002_chrY_paternal_124;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_124;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_124.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_124.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377231;alternative_source_transcripts=hg002_chrY_paternal_124.1,hg002_chrY_paternal_124.1;transcript_id=HG003_chrY_T0000192;gene_id=HG003_chrY_G0000062;Parent=HG003_chrY_T0000192;transcript_name=hg002_chrY_paternal_124.1;gene_name=LOC105377231;ID=exon:HG003_chrY_T0000192:3;Name=LOC105377231;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8005343	8017610	1000	+	.	source_transcript=hg002_chrY_paternal_124.2;source_transcript_name=hg002_chrY_paternal_124.1;source_gene=hg002_chrY_paternal_124;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_124;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_124.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_124.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377231;alternative_source_transcripts=hg002_chrY_paternal_124.2,hg002_chrY_paternal_124.2;transcript_id=HG003_chrY_T0000193;gene_id=HG003_chrY_G0000062;Parent=HG003_chrY_G0000062;transcript_name=hg002_chrY_paternal_124.1;gene_name=LOC105377231;ID=HG003_chrY_T0000193;Name=LOC105377231
HG003_chrY	CAT	exon	8005343	8005428	.	+	.	source_transcript=hg002_chrY_paternal_124.2;source_transcript_name=hg002_chrY_paternal_124.1;source_gene=hg002_chrY_paternal_124;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_124;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_124.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_124.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377231;alternative_source_transcripts=hg002_chrY_paternal_124.2,hg002_chrY_paternal_124.2;transcript_id=HG003_chrY_T0000193;gene_id=HG003_chrY_G0000062;Parent=HG003_chrY_T0000193;transcript_name=hg002_chrY_paternal_124.1;gene_name=LOC105377231;ID=exon:HG003_chrY_T0000193:0;Name=LOC105377231;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8005429	8013022	.	+	.	source_transcript=hg002_chrY_paternal_124.2;source_transcript_name=hg002_chrY_paternal_124.1;source_gene=hg002_chrY_paternal_124;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_124;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_124.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_124.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377231;alternative_source_transcripts=hg002_chrY_paternal_124.2,hg002_chrY_paternal_124.2;transcript_id=HG003_chrY_T0000193;gene_id=HG003_chrY_G0000062;Parent=HG003_chrY_T0000193;transcript_name=hg002_chrY_paternal_124.1;gene_name=LOC105377231;ID=intron:HG003_chrY_T0000193:0;Name=LOC105377231;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8013023	8013266	.	+	.	source_transcript=hg002_chrY_paternal_124.2;source_transcript_name=hg002_chrY_paternal_124.1;source_gene=hg002_chrY_paternal_124;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_124;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_124.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_124.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377231;alternative_source_transcripts=hg002_chrY_paternal_124.2,hg002_chrY_paternal_124.2;transcript_id=HG003_chrY_T0000193;gene_id=HG003_chrY_G0000062;Parent=HG003_chrY_T0000193;transcript_name=hg002_chrY_paternal_124.1;gene_name=LOC105377231;ID=exon:HG003_chrY_T0000193:1;Name=LOC105377231;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8013267	8013977	.	+	.	source_transcript=hg002_chrY_paternal_124.2;source_transcript_name=hg002_chrY_paternal_124.1;source_gene=hg002_chrY_paternal_124;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_124;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_124.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_124.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377231;alternative_source_transcripts=hg002_chrY_paternal_124.2,hg002_chrY_paternal_124.2;transcript_id=HG003_chrY_T0000193;gene_id=HG003_chrY_G0000062;Parent=HG003_chrY_T0000193;transcript_name=hg002_chrY_paternal_124.1;gene_name=LOC105377231;ID=intron:HG003_chrY_T0000193:1;Name=LOC105377231;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8013978	8014130	.	+	.	source_transcript=hg002_chrY_paternal_124.2;source_transcript_name=hg002_chrY_paternal_124.1;source_gene=hg002_chrY_paternal_124;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_124;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_124.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_124.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377231;alternative_source_transcripts=hg002_chrY_paternal_124.2,hg002_chrY_paternal_124.2;transcript_id=HG003_chrY_T0000193;gene_id=HG003_chrY_G0000062;Parent=HG003_chrY_T0000193;transcript_name=hg002_chrY_paternal_124.1;gene_name=LOC105377231;ID=exon:HG003_chrY_T0000193:2;Name=LOC105377231;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8014131	8017422	.	+	.	source_transcript=hg002_chrY_paternal_124.2;source_transcript_name=hg002_chrY_paternal_124.1;source_gene=hg002_chrY_paternal_124;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_124;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_124.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_124.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377231;alternative_source_transcripts=hg002_chrY_paternal_124.2,hg002_chrY_paternal_124.2;transcript_id=HG003_chrY_T0000193;gene_id=HG003_chrY_G0000062;Parent=HG003_chrY_T0000193;transcript_name=hg002_chrY_paternal_124.1;gene_name=LOC105377231;ID=intron:HG003_chrY_T0000193:2;Name=LOC105377231;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8017423	8017610	.	+	.	source_transcript=hg002_chrY_paternal_124.2;source_transcript_name=hg002_chrY_paternal_124.1;source_gene=hg002_chrY_paternal_124;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_124;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_124.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_124.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377231;alternative_source_transcripts=hg002_chrY_paternal_124.2,hg002_chrY_paternal_124.2;transcript_id=HG003_chrY_T0000193;gene_id=HG003_chrY_G0000062;Parent=HG003_chrY_T0000193;transcript_name=hg002_chrY_paternal_124.1;gene_name=LOC105377231;ID=exon:HG003_chrY_T0000193:3;Name=LOC105377231;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8159326	8161536	.	-	.	source_gene_common_name=LOC105377232;source_gene=hg002_chrY_paternal_128;alternative_source_transcripts=hg002_chrY_paternal_128.1,hg002_chrY_paternal_128.1;gene_id=HG003_chrY_G0000063;gene_biotype=lncRNA;gene_name=LOC105377232;gene_sources=liftoff;ID=HG003_chrY_G0000063;Name=LOC105377232
HG003_chrY	CAT	transcript	8159326	8161536	1000	-	.	source_transcript=hg002_chrY_paternal_128.1;source_transcript_name=hg002_chrY_paternal_128.1;source_gene=hg002_chrY_paternal_128;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_128;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_128.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_128.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377232;alternative_source_transcripts=hg002_chrY_paternal_128.1,hg002_chrY_paternal_128.1;transcript_id=HG003_chrY_T0000194;gene_id=HG003_chrY_G0000063;Parent=HG003_chrY_G0000063;transcript_name=hg002_chrY_paternal_128.1;gene_name=LOC105377232;ID=HG003_chrY_T0000194;Name=LOC105377232
HG003_chrY	CAT	exon	8159326	8159340	.	-	.	source_transcript=hg002_chrY_paternal_128.1;source_transcript_name=hg002_chrY_paternal_128.1;source_gene=hg002_chrY_paternal_128;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_128;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_128.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_128.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377232;alternative_source_transcripts=hg002_chrY_paternal_128.1,hg002_chrY_paternal_128.1;transcript_id=HG003_chrY_T0000194;gene_id=HG003_chrY_G0000063;Parent=HG003_chrY_T0000194;transcript_name=hg002_chrY_paternal_128.1;gene_name=LOC105377232;ID=exon:HG003_chrY_T0000194:0;Name=LOC105377232;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8159341	8160025	.	-	.	source_transcript=hg002_chrY_paternal_128.1;source_transcript_name=hg002_chrY_paternal_128.1;source_gene=hg002_chrY_paternal_128;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_128;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_128.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_128.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377232;alternative_source_transcripts=hg002_chrY_paternal_128.1,hg002_chrY_paternal_128.1;transcript_id=HG003_chrY_T0000194;gene_id=HG003_chrY_G0000063;Parent=HG003_chrY_T0000194;transcript_name=hg002_chrY_paternal_128.1;gene_name=LOC105377232;ID=intron:HG003_chrY_T0000194:0;Name=LOC105377232;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8160026	8160100	.	-	.	source_transcript=hg002_chrY_paternal_128.1;source_transcript_name=hg002_chrY_paternal_128.1;source_gene=hg002_chrY_paternal_128;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_128;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_128.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_128.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377232;alternative_source_transcripts=hg002_chrY_paternal_128.1,hg002_chrY_paternal_128.1;transcript_id=HG003_chrY_T0000194;gene_id=HG003_chrY_G0000063;Parent=HG003_chrY_T0000194;transcript_name=hg002_chrY_paternal_128.1;gene_name=LOC105377232;ID=exon:HG003_chrY_T0000194:1;Name=LOC105377232;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8160101	8161522	.	-	.	source_transcript=hg002_chrY_paternal_128.1;source_transcript_name=hg002_chrY_paternal_128.1;source_gene=hg002_chrY_paternal_128;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_128;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_128.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_128.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377232;alternative_source_transcripts=hg002_chrY_paternal_128.1,hg002_chrY_paternal_128.1;transcript_id=HG003_chrY_T0000194;gene_id=HG003_chrY_G0000063;Parent=HG003_chrY_T0000194;transcript_name=hg002_chrY_paternal_128.1;gene_name=LOC105377232;ID=intron:HG003_chrY_T0000194:1;Name=LOC105377232;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8161523	8161536	.	-	.	source_transcript=hg002_chrY_paternal_128.1;source_transcript_name=hg002_chrY_paternal_128.1;source_gene=hg002_chrY_paternal_128;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_128;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_128.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_128.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377232;alternative_source_transcripts=hg002_chrY_paternal_128.1,hg002_chrY_paternal_128.1;transcript_id=HG003_chrY_T0000194;gene_id=HG003_chrY_G0000063;Parent=HG003_chrY_T0000194;transcript_name=hg002_chrY_paternal_128.1;gene_name=LOC105377232;ID=exon:HG003_chrY_T0000194:2;Name=LOC105377232;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8171021	8172507	.	-	.	source_gene_common_name=LOC107987354;source_gene=hg002_chrY_paternal_129;alternative_source_transcripts=hg002_chrY_paternal_129.1,hg002_chrY_paternal_129.1;gene_id=HG003_chrY_G0000064;gene_biotype=lncRNA;gene_name=LOC107987354;gene_sources=liftoff;ID=HG003_chrY_G0000064;Name=LOC107987354
HG003_chrY	CAT	transcript	8171021	8172507	1000	-	.	source_transcript=hg002_chrY_paternal_129.1;source_transcript_name=hg002_chrY_paternal_129.1;source_gene=hg002_chrY_paternal_129;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_129;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_129.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_129.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987354;alternative_source_transcripts=hg002_chrY_paternal_129.1,hg002_chrY_paternal_129.1;transcript_id=HG003_chrY_T0000195;gene_id=HG003_chrY_G0000064;Parent=HG003_chrY_G0000064;transcript_name=hg002_chrY_paternal_129.1;gene_name=LOC107987354;ID=HG003_chrY_T0000195;Name=LOC107987354
HG003_chrY	CAT	exon	8171021	8171179	.	-	.	source_transcript=hg002_chrY_paternal_129.1;source_transcript_name=hg002_chrY_paternal_129.1;source_gene=hg002_chrY_paternal_129;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_129;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_129.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_129.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987354;alternative_source_transcripts=hg002_chrY_paternal_129.1,hg002_chrY_paternal_129.1;transcript_id=HG003_chrY_T0000195;gene_id=HG003_chrY_G0000064;Parent=HG003_chrY_T0000195;transcript_name=hg002_chrY_paternal_129.1;gene_name=LOC107987354;ID=exon:HG003_chrY_T0000195:0;Name=LOC107987354;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8171180	8171330	.	-	.	source_transcript=hg002_chrY_paternal_129.1;source_transcript_name=hg002_chrY_paternal_129.1;source_gene=hg002_chrY_paternal_129;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_129;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_129.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_129.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987354;alternative_source_transcripts=hg002_chrY_paternal_129.1,hg002_chrY_paternal_129.1;transcript_id=HG003_chrY_T0000195;gene_id=HG003_chrY_G0000064;Parent=HG003_chrY_T0000195;transcript_name=hg002_chrY_paternal_129.1;gene_name=LOC107987354;ID=intron:HG003_chrY_T0000195:0;Name=LOC107987354;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8171331	8171405	.	-	.	source_transcript=hg002_chrY_paternal_129.1;source_transcript_name=hg002_chrY_paternal_129.1;source_gene=hg002_chrY_paternal_129;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_129;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_129.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_129.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987354;alternative_source_transcripts=hg002_chrY_paternal_129.1,hg002_chrY_paternal_129.1;transcript_id=HG003_chrY_T0000195;gene_id=HG003_chrY_G0000064;Parent=HG003_chrY_T0000195;transcript_name=hg002_chrY_paternal_129.1;gene_name=LOC107987354;ID=exon:HG003_chrY_T0000195:1;Name=LOC107987354;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8171406	8172369	.	-	.	source_transcript=hg002_chrY_paternal_129.1;source_transcript_name=hg002_chrY_paternal_129.1;source_gene=hg002_chrY_paternal_129;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_129;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_129.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_129.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987354;alternative_source_transcripts=hg002_chrY_paternal_129.1,hg002_chrY_paternal_129.1;transcript_id=HG003_chrY_T0000195;gene_id=HG003_chrY_G0000064;Parent=HG003_chrY_T0000195;transcript_name=hg002_chrY_paternal_129.1;gene_name=LOC107987354;ID=intron:HG003_chrY_T0000195:1;Name=LOC107987354;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8172370	8172507	.	-	.	source_transcript=hg002_chrY_paternal_129.1;source_transcript_name=hg002_chrY_paternal_129.1;source_gene=hg002_chrY_paternal_129;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_129;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_129.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_129.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987354;alternative_source_transcripts=hg002_chrY_paternal_129.1,hg002_chrY_paternal_129.1;transcript_id=HG003_chrY_T0000195;gene_id=HG003_chrY_G0000064;Parent=HG003_chrY_T0000195;transcript_name=hg002_chrY_paternal_129.1;gene_name=LOC107987354;ID=exon:HG003_chrY_T0000195:2;Name=LOC107987354;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8248648	8255483	.	+	.	source_gene_common_name=LINC00279;source_gene=hg002_chrY_paternal_130;alternative_source_transcripts=hg002_chrY_paternal_130.1,hg002_chrY_paternal_130.1;gene_id=HG003_chrY_G0000065;gene_biotype=lncRNA;gene_name=LINC00279;gene_sources=liftoff;ID=HG003_chrY_G0000065;Name=LINC00279
HG003_chrY	CAT	transcript	8248648	8255483	1000	+	.	source_transcript=hg002_chrY_paternal_130.1;source_transcript_name=hg002_chrY_paternal_130.1;source_gene=hg002_chrY_paternal_130;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_130;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_130.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_130.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;alternative_source_transcripts=hg002_chrY_paternal_130.1,hg002_chrY_paternal_130.1;transcript_id=HG003_chrY_T0000196;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_G0000065;transcript_name=hg002_chrY_paternal_130.1;gene_name=LINC00279;ID=HG003_chrY_T0000196;Name=LINC00279
HG003_chrY	CAT	exon	8248648	8248760	.	+	.	source_transcript=hg002_chrY_paternal_130.1;source_transcript_name=hg002_chrY_paternal_130.1;source_gene=hg002_chrY_paternal_130;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_130;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_130.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_130.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;alternative_source_transcripts=hg002_chrY_paternal_130.1,hg002_chrY_paternal_130.1;transcript_id=HG003_chrY_T0000196;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000196;transcript_name=hg002_chrY_paternal_130.1;gene_name=LINC00279;ID=exon:HG003_chrY_T0000196:0;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8248761	8254485	.	+	.	source_transcript=hg002_chrY_paternal_130.1;source_transcript_name=hg002_chrY_paternal_130.1;source_gene=hg002_chrY_paternal_130;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_130;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_130.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_130.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;alternative_source_transcripts=hg002_chrY_paternal_130.1,hg002_chrY_paternal_130.1;transcript_id=HG003_chrY_T0000196;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000196;transcript_name=hg002_chrY_paternal_130.1;gene_name=LINC00279;ID=intron:HG003_chrY_T0000196:0;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8254486	8254681	.	+	.	source_transcript=hg002_chrY_paternal_130.1;source_transcript_name=hg002_chrY_paternal_130.1;source_gene=hg002_chrY_paternal_130;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_130;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_130.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_130.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;alternative_source_transcripts=hg002_chrY_paternal_130.1,hg002_chrY_paternal_130.1;transcript_id=HG003_chrY_T0000196;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000196;transcript_name=hg002_chrY_paternal_130.1;gene_name=LINC00279;ID=exon:HG003_chrY_T0000196:1;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8254682	8255032	.	+	.	source_transcript=hg002_chrY_paternal_130.1;source_transcript_name=hg002_chrY_paternal_130.1;source_gene=hg002_chrY_paternal_130;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_130;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_130.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_130.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;alternative_source_transcripts=hg002_chrY_paternal_130.1,hg002_chrY_paternal_130.1;transcript_id=HG003_chrY_T0000196;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000196;transcript_name=hg002_chrY_paternal_130.1;gene_name=LINC00279;ID=intron:HG003_chrY_T0000196:1;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8255033	8255275	.	+	.	source_transcript=hg002_chrY_paternal_130.1;source_transcript_name=hg002_chrY_paternal_130.1;source_gene=hg002_chrY_paternal_130;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_130;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_130.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_130.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;alternative_source_transcripts=hg002_chrY_paternal_130.1,hg002_chrY_paternal_130.1;transcript_id=HG003_chrY_T0000196;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000196;transcript_name=hg002_chrY_paternal_130.1;gene_name=LINC00279;ID=exon:HG003_chrY_T0000196:2;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8255276	8255407	.	+	.	source_transcript=hg002_chrY_paternal_130.1;source_transcript_name=hg002_chrY_paternal_130.1;source_gene=hg002_chrY_paternal_130;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_130;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_130.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_130.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;alternative_source_transcripts=hg002_chrY_paternal_130.1,hg002_chrY_paternal_130.1;transcript_id=HG003_chrY_T0000196;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000196;transcript_name=hg002_chrY_paternal_130.1;gene_name=LINC00279;ID=intron:HG003_chrY_T0000196:2;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8255408	8255483	.	+	.	source_transcript=hg002_chrY_paternal_130.1;source_transcript_name=hg002_chrY_paternal_130.1;source_gene=hg002_chrY_paternal_130;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_130;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_130.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_130.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;alternative_source_transcripts=hg002_chrY_paternal_130.1,hg002_chrY_paternal_130.1;transcript_id=HG003_chrY_T0000196;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000196;transcript_name=hg002_chrY_paternal_130.1;gene_name=LINC00279;ID=exon:HG003_chrY_T0000196:3;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8270398	8271239	.	+	.	source_gene_common_name=LOC107987340;source_gene=hg002_chrY_paternal_131;alternative_source_transcripts=hg002_chrY_paternal_131.1,hg002_chrY_paternal_131.1;gene_id=HG003_chrY_G0000066;gene_biotype=lncRNA;gene_name=LOC107987340;gene_sources=liftoff;ID=HG003_chrY_G0000066;Name=LOC107987340
HG003_chrY	CAT	transcript	8270398	8271239	1000	+	.	source_transcript=hg002_chrY_paternal_131.1;source_transcript_name=hg002_chrY_paternal_131.1;source_gene=hg002_chrY_paternal_131;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_131;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_131.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_131.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987340;alternative_source_transcripts=hg002_chrY_paternal_131.1,hg002_chrY_paternal_131.1;transcript_id=HG003_chrY_T0000197;gene_id=HG003_chrY_G0000066;Parent=HG003_chrY_G0000066;transcript_name=hg002_chrY_paternal_131.1;gene_name=LOC107987340;ID=HG003_chrY_T0000197;Name=LOC107987340
HG003_chrY	CAT	exon	8270398	8270519	.	+	.	source_transcript=hg002_chrY_paternal_131.1;source_transcript_name=hg002_chrY_paternal_131.1;source_gene=hg002_chrY_paternal_131;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_131;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_131.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_131.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987340;alternative_source_transcripts=hg002_chrY_paternal_131.1,hg002_chrY_paternal_131.1;transcript_id=HG003_chrY_T0000197;gene_id=HG003_chrY_G0000066;Parent=HG003_chrY_T0000197;transcript_name=hg002_chrY_paternal_131.1;gene_name=LOC107987340;ID=exon:HG003_chrY_T0000197:0;Name=LOC107987340;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8270520	8270854	.	+	.	source_transcript=hg002_chrY_paternal_131.1;source_transcript_name=hg002_chrY_paternal_131.1;source_gene=hg002_chrY_paternal_131;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_131;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_131.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_131.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987340;alternative_source_transcripts=hg002_chrY_paternal_131.1,hg002_chrY_paternal_131.1;transcript_id=HG003_chrY_T0000197;gene_id=HG003_chrY_G0000066;Parent=HG003_chrY_T0000197;transcript_name=hg002_chrY_paternal_131.1;gene_name=LOC107987340;ID=intron:HG003_chrY_T0000197:0;Name=LOC107987340;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8270855	8271239	.	+	.	source_transcript=hg002_chrY_paternal_131.1;source_transcript_name=hg002_chrY_paternal_131.1;source_gene=hg002_chrY_paternal_131;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_131;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_131.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_131.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987340;alternative_source_transcripts=hg002_chrY_paternal_131.1,hg002_chrY_paternal_131.1;transcript_id=HG003_chrY_T0000197;gene_id=HG003_chrY_G0000066;Parent=HG003_chrY_T0000197;transcript_name=hg002_chrY_paternal_131.1;gene_name=LOC107987340;ID=exon:HG003_chrY_T0000197:1;Name=LOC107987340;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8293726	8294234	.	-	.	source_gene_common_name=TTTY18;source_gene=hg002_chrY_paternal_132;alternative_source_transcripts=hg002_chrY_paternal_132.1,hg002_chrY_paternal_132.1;gene_id=HG003_chrY_G0000067;gene_biotype=lncRNA;gene_name=TTTY18;gene_sources=liftoff;ID=HG003_chrY_G0000067;Name=TTTY18
HG003_chrY	CAT	transcript	8293726	8294234	1000	-	.	source_transcript=hg002_chrY_paternal_132.1;source_transcript_name=hg002_chrY_paternal_132.1;source_gene=hg002_chrY_paternal_132;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_132;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_132.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_132.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=hg002_chrY_paternal_132.1,hg002_chrY_paternal_132.1;transcript_id=HG003_chrY_T0000198;gene_id=HG003_chrY_G0000067;Parent=HG003_chrY_G0000067;transcript_name=hg002_chrY_paternal_132.1;gene_name=TTTY18;ID=HG003_chrY_T0000198;Name=TTTY18
HG003_chrY	CAT	exon	8293726	8293788	.	-	.	source_transcript=hg002_chrY_paternal_132.1;source_transcript_name=hg002_chrY_paternal_132.1;source_gene=hg002_chrY_paternal_132;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_132;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_132.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_132.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=hg002_chrY_paternal_132.1,hg002_chrY_paternal_132.1;transcript_id=HG003_chrY_T0000198;gene_id=HG003_chrY_G0000067;Parent=HG003_chrY_T0000198;transcript_name=hg002_chrY_paternal_132.1;gene_name=TTTY18;ID=exon:HG003_chrY_T0000198:0;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8293789	8294076	.	-	.	source_transcript=hg002_chrY_paternal_132.1;source_transcript_name=hg002_chrY_paternal_132.1;source_gene=hg002_chrY_paternal_132;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_132;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_132.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_132.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=hg002_chrY_paternal_132.1,hg002_chrY_paternal_132.1;transcript_id=HG003_chrY_T0000198;gene_id=HG003_chrY_G0000067;Parent=HG003_chrY_T0000198;transcript_name=hg002_chrY_paternal_132.1;gene_name=TTTY18;ID=intron:HG003_chrY_T0000198:0;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8294077	8294234	.	-	.	source_transcript=hg002_chrY_paternal_132.1;source_transcript_name=hg002_chrY_paternal_132.1;source_gene=hg002_chrY_paternal_132;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_132;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_132.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_132.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=hg002_chrY_paternal_132.1,hg002_chrY_paternal_132.1;transcript_id=HG003_chrY_T0000198;gene_id=HG003_chrY_G0000067;Parent=HG003_chrY_T0000198;transcript_name=hg002_chrY_paternal_132.1;gene_name=TTTY18;ID=exon:HG003_chrY_T0000198:1;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8304253	8305674	.	-	.	source_gene_common_name=LOC105377234;source_gene=hg002_chrY_paternal_133;alternative_source_transcripts=hg002_chrY_paternal_133.1,hg002_chrY_paternal_133.1;gene_id=HG003_chrY_G0000068;gene_biotype=lncRNA;gene_name=LOC105377234;gene_sources=liftoff;ID=HG003_chrY_G0000068;Name=LOC105377234
HG003_chrY	CAT	transcript	8304253	8305674	1000	-	.	source_transcript=hg002_chrY_paternal_133.1;source_transcript_name=hg002_chrY_paternal_133.1;source_gene=hg002_chrY_paternal_133;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_133;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_133.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_133.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377234;alternative_source_transcripts=hg002_chrY_paternal_133.1,hg002_chrY_paternal_133.1;transcript_id=HG003_chrY_T0000199;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_G0000068;transcript_name=hg002_chrY_paternal_133.1;gene_name=LOC105377234;ID=HG003_chrY_T0000199;Name=LOC105377234
HG003_chrY	CAT	exon	8304253	8304339	.	-	.	source_transcript=hg002_chrY_paternal_133.1;source_transcript_name=hg002_chrY_paternal_133.1;source_gene=hg002_chrY_paternal_133;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_133;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_133.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_133.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377234;alternative_source_transcripts=hg002_chrY_paternal_133.1,hg002_chrY_paternal_133.1;transcript_id=HG003_chrY_T0000199;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000199;transcript_name=hg002_chrY_paternal_133.1;gene_name=LOC105377234;ID=exon:HG003_chrY_T0000199:0;Name=LOC105377234;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8304340	8304823	.	-	.	source_transcript=hg002_chrY_paternal_133.1;source_transcript_name=hg002_chrY_paternal_133.1;source_gene=hg002_chrY_paternal_133;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_133;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_133.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_133.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377234;alternative_source_transcripts=hg002_chrY_paternal_133.1,hg002_chrY_paternal_133.1;transcript_id=HG003_chrY_T0000199;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000199;transcript_name=hg002_chrY_paternal_133.1;gene_name=LOC105377234;ID=intron:HG003_chrY_T0000199:0;Name=LOC105377234;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8304824	8304901	.	-	.	source_transcript=hg002_chrY_paternal_133.1;source_transcript_name=hg002_chrY_paternal_133.1;source_gene=hg002_chrY_paternal_133;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_133;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_133.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_133.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377234;alternative_source_transcripts=hg002_chrY_paternal_133.1,hg002_chrY_paternal_133.1;transcript_id=HG003_chrY_T0000199;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000199;transcript_name=hg002_chrY_paternal_133.1;gene_name=LOC105377234;ID=exon:HG003_chrY_T0000199:1;Name=LOC105377234;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8304902	8305482	.	-	.	source_transcript=hg002_chrY_paternal_133.1;source_transcript_name=hg002_chrY_paternal_133.1;source_gene=hg002_chrY_paternal_133;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_133;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_133.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_133.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377234;alternative_source_transcripts=hg002_chrY_paternal_133.1,hg002_chrY_paternal_133.1;transcript_id=HG003_chrY_T0000199;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000199;transcript_name=hg002_chrY_paternal_133.1;gene_name=LOC105377234;ID=intron:HG003_chrY_T0000199:1;Name=LOC105377234;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8305483	8305674	.	-	.	source_transcript=hg002_chrY_paternal_133.1;source_transcript_name=hg002_chrY_paternal_133.1;source_gene=hg002_chrY_paternal_133;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_133;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_133.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_133.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377234;alternative_source_transcripts=hg002_chrY_paternal_133.1,hg002_chrY_paternal_133.1;transcript_id=HG003_chrY_T0000199;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000199;transcript_name=hg002_chrY_paternal_133.1;gene_name=LOC105377234;ID=exon:HG003_chrY_T0000199:2;Name=LOC105377234;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8314851	8315662	.	+	.	source_gene_common_name=TTTY19;source_gene=hg002_chrY_paternal_134;alternative_source_transcripts=hg002_chrY_paternal_134.1,hg002_chrY_paternal_134.1;gene_id=HG003_chrY_G0000069;gene_biotype=lncRNA;gene_name=TTTY19;gene_sources=liftoff;ID=HG003_chrY_G0000069;Name=TTTY19
HG003_chrY	CAT	transcript	8314851	8315662	1000	+	.	source_transcript=hg002_chrY_paternal_134.1;source_transcript_name=hg002_chrY_paternal_134.1;source_gene=hg002_chrY_paternal_134;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_134;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_134.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_134.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY19;alternative_source_transcripts=hg002_chrY_paternal_134.1,hg002_chrY_paternal_134.1;transcript_id=HG003_chrY_T0000200;gene_id=HG003_chrY_G0000069;Parent=HG003_chrY_G0000069;transcript_name=hg002_chrY_paternal_134.1;gene_name=TTTY19;ID=HG003_chrY_T0000200;Name=TTTY19
HG003_chrY	CAT	exon	8314851	8314938	.	+	.	source_transcript=hg002_chrY_paternal_134.1;source_transcript_name=hg002_chrY_paternal_134.1;source_gene=hg002_chrY_paternal_134;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_134;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_134.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_134.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY19;alternative_source_transcripts=hg002_chrY_paternal_134.1,hg002_chrY_paternal_134.1;transcript_id=HG003_chrY_T0000200;gene_id=HG003_chrY_G0000069;Parent=HG003_chrY_T0000200;transcript_name=hg002_chrY_paternal_134.1;gene_name=TTTY19;ID=exon:HG003_chrY_T0000200:0;Name=TTTY19;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8314939	8315481	.	+	.	source_transcript=hg002_chrY_paternal_134.1;source_transcript_name=hg002_chrY_paternal_134.1;source_gene=hg002_chrY_paternal_134;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_134;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_134.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_134.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY19;alternative_source_transcripts=hg002_chrY_paternal_134.1,hg002_chrY_paternal_134.1;transcript_id=HG003_chrY_T0000200;gene_id=HG003_chrY_G0000069;Parent=HG003_chrY_T0000200;transcript_name=hg002_chrY_paternal_134.1;gene_name=TTTY19;ID=intron:HG003_chrY_T0000200:0;Name=TTTY19;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8315482	8315662	.	+	.	source_transcript=hg002_chrY_paternal_134.1;source_transcript_name=hg002_chrY_paternal_134.1;source_gene=hg002_chrY_paternal_134;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_134;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_134.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_134.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY19;alternative_source_transcripts=hg002_chrY_paternal_134.1,hg002_chrY_paternal_134.1;transcript_id=HG003_chrY_T0000200;gene_id=HG003_chrY_G0000069;Parent=HG003_chrY_T0000200;transcript_name=hg002_chrY_paternal_134.1;gene_name=TTTY19;ID=exon:HG003_chrY_T0000200:1;Name=TTTY19;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8332185	8334670	.	-	.	source_gene_common_name=LOC105377235;source_gene=hg002_chrY_paternal_135;alternative_source_transcripts=hg002_chrY_paternal_135.1,hg002_chrY_paternal_135.1;gene_id=HG003_chrY_G0000070;gene_biotype=lncRNA;gene_name=LOC105377235;gene_sources=liftoff;ID=HG003_chrY_G0000070;Name=LOC105377235
HG003_chrY	CAT	transcript	8332185	8334670	1000	-	.	source_transcript=hg002_chrY_paternal_135.1;source_transcript_name=hg002_chrY_paternal_135.1;source_gene=hg002_chrY_paternal_135;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_135;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_135.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_135.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377235;alternative_source_transcripts=hg002_chrY_paternal_135.1,hg002_chrY_paternal_135.1;transcript_id=HG003_chrY_T0000201;gene_id=HG003_chrY_G0000070;Parent=HG003_chrY_G0000070;transcript_name=hg002_chrY_paternal_135.1;gene_name=LOC105377235;ID=HG003_chrY_T0000201;Name=LOC105377235
HG003_chrY	CAT	exon	8332185	8332468	.	-	.	source_transcript=hg002_chrY_paternal_135.1;source_transcript_name=hg002_chrY_paternal_135.1;source_gene=hg002_chrY_paternal_135;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_135;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_135.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_135.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377235;alternative_source_transcripts=hg002_chrY_paternal_135.1,hg002_chrY_paternal_135.1;transcript_id=HG003_chrY_T0000201;gene_id=HG003_chrY_G0000070;Parent=HG003_chrY_T0000201;transcript_name=hg002_chrY_paternal_135.1;gene_name=LOC105377235;ID=exon:HG003_chrY_T0000201:0;Name=LOC105377235;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8332469	8332565	.	-	.	source_transcript=hg002_chrY_paternal_135.1;source_transcript_name=hg002_chrY_paternal_135.1;source_gene=hg002_chrY_paternal_135;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_135;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_135.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_135.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377235;alternative_source_transcripts=hg002_chrY_paternal_135.1,hg002_chrY_paternal_135.1;transcript_id=HG003_chrY_T0000201;gene_id=HG003_chrY_G0000070;Parent=HG003_chrY_T0000201;transcript_name=hg002_chrY_paternal_135.1;gene_name=LOC105377235;ID=intron:HG003_chrY_T0000201:0;Name=LOC105377235;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8332566	8332661	.	-	.	source_transcript=hg002_chrY_paternal_135.1;source_transcript_name=hg002_chrY_paternal_135.1;source_gene=hg002_chrY_paternal_135;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_135;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_135.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_135.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377235;alternative_source_transcripts=hg002_chrY_paternal_135.1,hg002_chrY_paternal_135.1;transcript_id=HG003_chrY_T0000201;gene_id=HG003_chrY_G0000070;Parent=HG003_chrY_T0000201;transcript_name=hg002_chrY_paternal_135.1;gene_name=LOC105377235;ID=exon:HG003_chrY_T0000201:1;Name=LOC105377235;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8332662	8332751	.	-	.	source_transcript=hg002_chrY_paternal_135.1;source_transcript_name=hg002_chrY_paternal_135.1;source_gene=hg002_chrY_paternal_135;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_135;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_135.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_135.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377235;alternative_source_transcripts=hg002_chrY_paternal_135.1,hg002_chrY_paternal_135.1;transcript_id=HG003_chrY_T0000201;gene_id=HG003_chrY_G0000070;Parent=HG003_chrY_T0000201;transcript_name=hg002_chrY_paternal_135.1;gene_name=LOC105377235;ID=intron:HG003_chrY_T0000201:1;Name=LOC105377235;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8332752	8333014	.	-	.	source_transcript=hg002_chrY_paternal_135.1;source_transcript_name=hg002_chrY_paternal_135.1;source_gene=hg002_chrY_paternal_135;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_135;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_135.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_135.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377235;alternative_source_transcripts=hg002_chrY_paternal_135.1,hg002_chrY_paternal_135.1;transcript_id=HG003_chrY_T0000201;gene_id=HG003_chrY_G0000070;Parent=HG003_chrY_T0000201;transcript_name=hg002_chrY_paternal_135.1;gene_name=LOC105377235;ID=exon:HG003_chrY_T0000201:2;Name=LOC105377235;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8333015	8334482	.	-	.	source_transcript=hg002_chrY_paternal_135.1;source_transcript_name=hg002_chrY_paternal_135.1;source_gene=hg002_chrY_paternal_135;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_135;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_135.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_135.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377235;alternative_source_transcripts=hg002_chrY_paternal_135.1,hg002_chrY_paternal_135.1;transcript_id=HG003_chrY_T0000201;gene_id=HG003_chrY_G0000070;Parent=HG003_chrY_T0000201;transcript_name=hg002_chrY_paternal_135.1;gene_name=LOC105377235;ID=intron:HG003_chrY_T0000201:2;Name=LOC105377235;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8334483	8334670	.	-	.	source_transcript=hg002_chrY_paternal_135.1;source_transcript_name=hg002_chrY_paternal_135.1;source_gene=hg002_chrY_paternal_135;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_135;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_135.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_135.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377235;alternative_source_transcripts=hg002_chrY_paternal_135.1,hg002_chrY_paternal_135.1;transcript_id=HG003_chrY_T0000201;gene_id=HG003_chrY_G0000070;Parent=HG003_chrY_T0000201;transcript_name=hg002_chrY_paternal_135.1;gene_name=LOC105377235;ID=exon:HG003_chrY_T0000201:3;Name=LOC105377235;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8393708	8427774	.	-	.	source_gene_common_name=TTTY11;source_gene=hg002_chrY_paternal_136;alternative_source_transcripts=hg002_chrY_paternal_136.1,hg002_chrY_paternal_136.1;gene_id=HG003_chrY_G0000071;gene_biotype=lncRNA;gene_name=TTTY11;gene_sources=liftoff;ID=HG003_chrY_G0000071;Name=TTTY11
HG003_chrY	CAT	transcript	8393708	8427774	1000	-	.	source_transcript=hg002_chrY_paternal_136.1;source_transcript_name=hg002_chrY_paternal_136.1;source_gene=hg002_chrY_paternal_136;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_136;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_136.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_136.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY11;alternative_source_transcripts=hg002_chrY_paternal_136.1,hg002_chrY_paternal_136.1;transcript_id=HG003_chrY_T0000202;gene_id=HG003_chrY_G0000071;Parent=HG003_chrY_G0000071;transcript_name=hg002_chrY_paternal_136.1;gene_name=TTTY11;ID=HG003_chrY_T0000202;Name=TTTY11
HG003_chrY	CAT	exon	8393708	8393801	.	-	.	source_transcript=hg002_chrY_paternal_136.1;source_transcript_name=hg002_chrY_paternal_136.1;source_gene=hg002_chrY_paternal_136;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_136;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_136.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_136.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY11;alternative_source_transcripts=hg002_chrY_paternal_136.1,hg002_chrY_paternal_136.1;transcript_id=HG003_chrY_T0000202;gene_id=HG003_chrY_G0000071;Parent=HG003_chrY_T0000202;transcript_name=hg002_chrY_paternal_136.1;gene_name=TTTY11;ID=exon:HG003_chrY_T0000202:0;Name=TTTY11;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8393802	8394282	.	-	.	source_transcript=hg002_chrY_paternal_136.1;source_transcript_name=hg002_chrY_paternal_136.1;source_gene=hg002_chrY_paternal_136;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_136;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_136.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_136.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY11;alternative_source_transcripts=hg002_chrY_paternal_136.1,hg002_chrY_paternal_136.1;transcript_id=HG003_chrY_T0000202;gene_id=HG003_chrY_G0000071;Parent=HG003_chrY_T0000202;transcript_name=hg002_chrY_paternal_136.1;gene_name=TTTY11;ID=intron:HG003_chrY_T0000202:0;Name=TTTY11;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8394283	8394598	.	-	.	source_transcript=hg002_chrY_paternal_136.1;source_transcript_name=hg002_chrY_paternal_136.1;source_gene=hg002_chrY_paternal_136;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_136;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_136.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_136.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY11;alternative_source_transcripts=hg002_chrY_paternal_136.1,hg002_chrY_paternal_136.1;transcript_id=HG003_chrY_T0000202;gene_id=HG003_chrY_G0000071;Parent=HG003_chrY_T0000202;transcript_name=hg002_chrY_paternal_136.1;gene_name=TTTY11;ID=exon:HG003_chrY_T0000202:1;Name=TTTY11;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8394599	8399394	.	-	.	source_transcript=hg002_chrY_paternal_136.1;source_transcript_name=hg002_chrY_paternal_136.1;source_gene=hg002_chrY_paternal_136;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_136;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_136.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_136.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY11;alternative_source_transcripts=hg002_chrY_paternal_136.1,hg002_chrY_paternal_136.1;transcript_id=HG003_chrY_T0000202;gene_id=HG003_chrY_G0000071;Parent=HG003_chrY_T0000202;transcript_name=hg002_chrY_paternal_136.1;gene_name=TTTY11;ID=intron:HG003_chrY_T0000202:1;Name=TTTY11;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8399395	8399697	.	-	.	source_transcript=hg002_chrY_paternal_136.1;source_transcript_name=hg002_chrY_paternal_136.1;source_gene=hg002_chrY_paternal_136;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_136;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_136.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_136.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY11;alternative_source_transcripts=hg002_chrY_paternal_136.1,hg002_chrY_paternal_136.1;transcript_id=HG003_chrY_T0000202;gene_id=HG003_chrY_G0000071;Parent=HG003_chrY_T0000202;transcript_name=hg002_chrY_paternal_136.1;gene_name=TTTY11;ID=exon:HG003_chrY_T0000202:2;Name=TTTY11;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8399698	8405255	.	-	.	source_transcript=hg002_chrY_paternal_136.1;source_transcript_name=hg002_chrY_paternal_136.1;source_gene=hg002_chrY_paternal_136;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_136;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_136.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_136.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY11;alternative_source_transcripts=hg002_chrY_paternal_136.1,hg002_chrY_paternal_136.1;transcript_id=HG003_chrY_T0000202;gene_id=HG003_chrY_G0000071;Parent=HG003_chrY_T0000202;transcript_name=hg002_chrY_paternal_136.1;gene_name=TTTY11;ID=intron:HG003_chrY_T0000202:2;Name=TTTY11;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8405256	8405339	.	-	.	source_transcript=hg002_chrY_paternal_136.1;source_transcript_name=hg002_chrY_paternal_136.1;source_gene=hg002_chrY_paternal_136;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_136;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_136.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_136.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY11;alternative_source_transcripts=hg002_chrY_paternal_136.1,hg002_chrY_paternal_136.1;transcript_id=HG003_chrY_T0000202;gene_id=HG003_chrY_G0000071;Parent=HG003_chrY_T0000202;transcript_name=hg002_chrY_paternal_136.1;gene_name=TTTY11;ID=exon:HG003_chrY_T0000202:3;Name=TTTY11;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8405340	8427737	.	-	.	source_transcript=hg002_chrY_paternal_136.1;source_transcript_name=hg002_chrY_paternal_136.1;source_gene=hg002_chrY_paternal_136;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_136;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_136.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_136.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY11;alternative_source_transcripts=hg002_chrY_paternal_136.1,hg002_chrY_paternal_136.1;transcript_id=HG003_chrY_T0000202;gene_id=HG003_chrY_G0000071;Parent=HG003_chrY_T0000202;transcript_name=hg002_chrY_paternal_136.1;gene_name=TTTY11;ID=intron:HG003_chrY_T0000202:3;Name=TTTY11;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8427738	8427774	.	-	.	source_transcript=hg002_chrY_paternal_136.1;source_transcript_name=hg002_chrY_paternal_136.1;source_gene=hg002_chrY_paternal_136;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_136;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_136.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_136.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY11;alternative_source_transcripts=hg002_chrY_paternal_136.1,hg002_chrY_paternal_136.1;transcript_id=HG003_chrY_T0000202;gene_id=HG003_chrY_G0000071;Parent=HG003_chrY_T0000202;transcript_name=hg002_chrY_paternal_136.1;gene_name=TTTY11;ID=exon:HG003_chrY_T0000202:4;Name=TTTY11;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8825368	8830232	.	+	.	source_gene_common_name=LOC105379264;source_gene=hg002_chrY_paternal_145;alternative_source_transcripts=hg002_chrY_paternal_145.1,hg002_chrY_paternal_145.1;gene_id=HG003_chrY_G0000072;gene_biotype=lncRNA;gene_name=LOC105379264;gene_sources=liftoff;ID=HG003_chrY_G0000072;Name=LOC105379264
HG003_chrY	CAT	transcript	8825368	8830232	1000	+	.	source_transcript=hg002_chrY_paternal_145.1;source_transcript_name=hg002_chrY_paternal_145.1;source_gene=hg002_chrY_paternal_145;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_145;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_145.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_145.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379264;alternative_source_transcripts=hg002_chrY_paternal_145.1,hg002_chrY_paternal_145.1;transcript_id=HG003_chrY_T0000203;gene_id=HG003_chrY_G0000072;Parent=HG003_chrY_G0000072;transcript_name=hg002_chrY_paternal_145.1;gene_name=LOC105379264;ID=HG003_chrY_T0000203;Name=LOC105379264
HG003_chrY	CAT	exon	8825368	8825442	.	+	.	source_transcript=hg002_chrY_paternal_145.1;source_transcript_name=hg002_chrY_paternal_145.1;source_gene=hg002_chrY_paternal_145;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_145;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_145.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_145.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379264;alternative_source_transcripts=hg002_chrY_paternal_145.1,hg002_chrY_paternal_145.1;transcript_id=HG003_chrY_T0000203;gene_id=HG003_chrY_G0000072;Parent=HG003_chrY_T0000203;transcript_name=hg002_chrY_paternal_145.1;gene_name=LOC105379264;ID=exon:HG003_chrY_T0000203:0;Name=LOC105379264;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8825443	8825596	.	+	.	source_transcript=hg002_chrY_paternal_145.1;source_transcript_name=hg002_chrY_paternal_145.1;source_gene=hg002_chrY_paternal_145;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_145;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_145.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_145.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379264;alternative_source_transcripts=hg002_chrY_paternal_145.1,hg002_chrY_paternal_145.1;transcript_id=HG003_chrY_T0000203;gene_id=HG003_chrY_G0000072;Parent=HG003_chrY_T0000203;transcript_name=hg002_chrY_paternal_145.1;gene_name=LOC105379264;ID=intron:HG003_chrY_T0000203:0;Name=LOC105379264;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8825597	8825701	.	+	.	source_transcript=hg002_chrY_paternal_145.1;source_transcript_name=hg002_chrY_paternal_145.1;source_gene=hg002_chrY_paternal_145;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_145;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_145.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_145.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379264;alternative_source_transcripts=hg002_chrY_paternal_145.1,hg002_chrY_paternal_145.1;transcript_id=HG003_chrY_T0000203;gene_id=HG003_chrY_G0000072;Parent=HG003_chrY_T0000203;transcript_name=hg002_chrY_paternal_145.1;gene_name=LOC105379264;ID=exon:HG003_chrY_T0000203:1;Name=LOC105379264;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8825702	8827763	.	+	.	source_transcript=hg002_chrY_paternal_145.1;source_transcript_name=hg002_chrY_paternal_145.1;source_gene=hg002_chrY_paternal_145;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_145;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_145.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_145.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379264;alternative_source_transcripts=hg002_chrY_paternal_145.1,hg002_chrY_paternal_145.1;transcript_id=HG003_chrY_T0000203;gene_id=HG003_chrY_G0000072;Parent=HG003_chrY_T0000203;transcript_name=hg002_chrY_paternal_145.1;gene_name=LOC105379264;ID=intron:HG003_chrY_T0000203:1;Name=LOC105379264;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8827764	8827839	.	+	.	source_transcript=hg002_chrY_paternal_145.1;source_transcript_name=hg002_chrY_paternal_145.1;source_gene=hg002_chrY_paternal_145;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_145;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_145.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_145.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379264;alternative_source_transcripts=hg002_chrY_paternal_145.1,hg002_chrY_paternal_145.1;transcript_id=HG003_chrY_T0000203;gene_id=HG003_chrY_G0000072;Parent=HG003_chrY_T0000203;transcript_name=hg002_chrY_paternal_145.1;gene_name=LOC105379264;ID=exon:HG003_chrY_T0000203:2;Name=LOC105379264;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8827840	8830148	.	+	.	source_transcript=hg002_chrY_paternal_145.1;source_transcript_name=hg002_chrY_paternal_145.1;source_gene=hg002_chrY_paternal_145;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_145;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_145.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_145.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379264;alternative_source_transcripts=hg002_chrY_paternal_145.1,hg002_chrY_paternal_145.1;transcript_id=HG003_chrY_T0000203;gene_id=HG003_chrY_G0000072;Parent=HG003_chrY_T0000203;transcript_name=hg002_chrY_paternal_145.1;gene_name=LOC105379264;ID=intron:HG003_chrY_T0000203:2;Name=LOC105379264;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8830149	8830232	.	+	.	source_transcript=hg002_chrY_paternal_145.1;source_transcript_name=hg002_chrY_paternal_145.1;source_gene=hg002_chrY_paternal_145;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_145;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_145.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_145.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379264;alternative_source_transcripts=hg002_chrY_paternal_145.1,hg002_chrY_paternal_145.1;transcript_id=HG003_chrY_T0000203;gene_id=HG003_chrY_G0000072;Parent=HG003_chrY_T0000203;transcript_name=hg002_chrY_paternal_145.1;gene_name=LOC105379264;ID=exon:HG003_chrY_T0000203:3;Name=LOC105379264;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8834921	8843467	.	+	.	source_gene_common_name=LOC105379265;source_gene=hg002_chrY_paternal_146;alternative_source_transcripts=hg002_chrY_paternal_146.1,hg002_chrY_paternal_146.1;gene_id=HG003_chrY_G0000073;gene_biotype=lncRNA;gene_name=LOC105379265;gene_sources=liftoff;ID=HG003_chrY_G0000073;Name=LOC105379265
HG003_chrY	CAT	transcript	8834921	8843467	1000	+	.	source_transcript=hg002_chrY_paternal_146.1;source_transcript_name=hg002_chrY_paternal_146.1;source_gene=hg002_chrY_paternal_146;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_146;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_146.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_146.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379265;alternative_source_transcripts=hg002_chrY_paternal_146.1,hg002_chrY_paternal_146.1;transcript_id=HG003_chrY_T0000204;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_G0000073;transcript_name=hg002_chrY_paternal_146.1;gene_name=LOC105379265;ID=HG003_chrY_T0000204;Name=LOC105379265
HG003_chrY	CAT	exon	8834921	8835476	.	+	.	source_transcript=hg002_chrY_paternal_146.1;source_transcript_name=hg002_chrY_paternal_146.1;source_gene=hg002_chrY_paternal_146;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_146;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_146.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_146.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379265;alternative_source_transcripts=hg002_chrY_paternal_146.1,hg002_chrY_paternal_146.1;transcript_id=HG003_chrY_T0000204;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000204;transcript_name=hg002_chrY_paternal_146.1;gene_name=LOC105379265;ID=exon:HG003_chrY_T0000204:0;Name=LOC105379265;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8835477	8836584	.	+	.	source_transcript=hg002_chrY_paternal_146.1;source_transcript_name=hg002_chrY_paternal_146.1;source_gene=hg002_chrY_paternal_146;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_146;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_146.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_146.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379265;alternative_source_transcripts=hg002_chrY_paternal_146.1,hg002_chrY_paternal_146.1;transcript_id=HG003_chrY_T0000204;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000204;transcript_name=hg002_chrY_paternal_146.1;gene_name=LOC105379265;ID=intron:HG003_chrY_T0000204:0;Name=LOC105379265;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8836585	8836726	.	+	.	source_transcript=hg002_chrY_paternal_146.1;source_transcript_name=hg002_chrY_paternal_146.1;source_gene=hg002_chrY_paternal_146;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_146;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_146.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_146.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379265;alternative_source_transcripts=hg002_chrY_paternal_146.1,hg002_chrY_paternal_146.1;transcript_id=HG003_chrY_T0000204;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000204;transcript_name=hg002_chrY_paternal_146.1;gene_name=LOC105379265;ID=exon:HG003_chrY_T0000204:1;Name=LOC105379265;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8836727	8838870	.	+	.	source_transcript=hg002_chrY_paternal_146.1;source_transcript_name=hg002_chrY_paternal_146.1;source_gene=hg002_chrY_paternal_146;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_146;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_146.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_146.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379265;alternative_source_transcripts=hg002_chrY_paternal_146.1,hg002_chrY_paternal_146.1;transcript_id=HG003_chrY_T0000204;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000204;transcript_name=hg002_chrY_paternal_146.1;gene_name=LOC105379265;ID=intron:HG003_chrY_T0000204:1;Name=LOC105379265;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8838871	8838957	.	+	.	source_transcript=hg002_chrY_paternal_146.1;source_transcript_name=hg002_chrY_paternal_146.1;source_gene=hg002_chrY_paternal_146;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_146;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_146.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_146.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379265;alternative_source_transcripts=hg002_chrY_paternal_146.1,hg002_chrY_paternal_146.1;transcript_id=HG003_chrY_T0000204;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000204;transcript_name=hg002_chrY_paternal_146.1;gene_name=LOC105379265;ID=exon:HG003_chrY_T0000204:2;Name=LOC105379265;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8838958	8843338	.	+	.	source_transcript=hg002_chrY_paternal_146.1;source_transcript_name=hg002_chrY_paternal_146.1;source_gene=hg002_chrY_paternal_146;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_146;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_146.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_146.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379265;alternative_source_transcripts=hg002_chrY_paternal_146.1,hg002_chrY_paternal_146.1;transcript_id=HG003_chrY_T0000204;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000204;transcript_name=hg002_chrY_paternal_146.1;gene_name=LOC105379265;ID=intron:HG003_chrY_T0000204:2;Name=LOC105379265;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8843339	8843467	.	+	.	source_transcript=hg002_chrY_paternal_146.1;source_transcript_name=hg002_chrY_paternal_146.1;source_gene=hg002_chrY_paternal_146;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_146;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_146.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_146.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379265;alternative_source_transcripts=hg002_chrY_paternal_146.1,hg002_chrY_paternal_146.1;transcript_id=HG003_chrY_T0000204;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000204;transcript_name=hg002_chrY_paternal_146.1;gene_name=LOC105379265;ID=exon:HG003_chrY_T0000204:3;Name=LOC105379265;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8849501	8851751	.	+	.	source_gene_common_name=LOC105379266;source_gene=hg002_chrY_paternal_147;alternative_source_transcripts=hg002_chrY_paternal_147.1;gene_id=HG003_chrY_G0000074;gene_biotype=lncRNA;gene_name=LOC105379266;gene_sources=liftoff,transMap;ID=HG003_chrY_G0000074;Name=LOC105379266
HG003_chrY	CAT	transcript	8849501	8851751	1000	+	.	source_transcript=hg002_chrY_paternal_147.1;source_transcript_name=hg002_chrY_paternal_147.1;source_gene=hg002_chrY_paternal_147;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_147;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_147.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_147.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379266;alternative_source_transcripts=hg002_chrY_paternal_147.1;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000205;gene_id=HG003_chrY_G0000074;Parent=HG003_chrY_G0000074;transcript_name=hg002_chrY_paternal_147.1;gene_name=LOC105379266;ID=HG003_chrY_T0000205;Name=LOC105379266
HG003_chrY	CAT	exon	8849501	8849785	.	+	.	source_transcript=hg002_chrY_paternal_147.1;source_transcript_name=hg002_chrY_paternal_147.1;source_gene=hg002_chrY_paternal_147;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_147;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_147.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_147.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379266;alternative_source_transcripts=hg002_chrY_paternal_147.1;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000205;gene_id=HG003_chrY_G0000074;Parent=HG003_chrY_T0000205;transcript_name=hg002_chrY_paternal_147.1;gene_name=LOC105379266;ID=exon:HG003_chrY_T0000205:0;Name=LOC105379266;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8849786	8850469	.	+	.	source_transcript=hg002_chrY_paternal_147.1;source_transcript_name=hg002_chrY_paternal_147.1;source_gene=hg002_chrY_paternal_147;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_147;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_147.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_147.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379266;alternative_source_transcripts=hg002_chrY_paternal_147.1;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000205;gene_id=HG003_chrY_G0000074;Parent=HG003_chrY_T0000205;transcript_name=hg002_chrY_paternal_147.1;gene_name=LOC105379266;ID=intron:HG003_chrY_T0000205:0;Name=LOC105379266;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8850470	8851751	.	+	.	source_transcript=hg002_chrY_paternal_147.1;source_transcript_name=hg002_chrY_paternal_147.1;source_gene=hg002_chrY_paternal_147;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_147;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_147.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_147.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379266;alternative_source_transcripts=hg002_chrY_paternal_147.1;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000205;gene_id=HG003_chrY_G0000074;Parent=HG003_chrY_T0000205;transcript_name=hg002_chrY_paternal_147.1;gene_name=LOC105379266;ID=exon:HG003_chrY_T0000205:1;Name=LOC105379266;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8852907	8865137	.	+	.	source_gene_common_name=LOC105379267;source_gene=hg002_chrY_paternal_148;alternative_source_transcripts=hg002_chrY_paternal_148.1,hg002_chrY_paternal_148.1;gene_id=HG003_chrY_G0000075;gene_biotype=lncRNA;gene_name=LOC105379267;gene_sources=liftoff;ID=HG003_chrY_G0000075;Name=LOC105379267
HG003_chrY	CAT	transcript	8852907	8865137	1000	+	.	source_transcript=hg002_chrY_paternal_148.1;source_transcript_name=hg002_chrY_paternal_148.1;source_gene=hg002_chrY_paternal_148;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_148;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_148.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_148.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379267;alternative_source_transcripts=hg002_chrY_paternal_148.1,hg002_chrY_paternal_148.1;transcript_id=HG003_chrY_T0000206;gene_id=HG003_chrY_G0000075;Parent=HG003_chrY_G0000075;transcript_name=hg002_chrY_paternal_148.1;gene_name=LOC105379267;ID=HG003_chrY_T0000206;Name=LOC105379267
HG003_chrY	CAT	exon	8852907	8853078	.	+	.	source_transcript=hg002_chrY_paternal_148.1;source_transcript_name=hg002_chrY_paternal_148.1;source_gene=hg002_chrY_paternal_148;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_148;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_148.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_148.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379267;alternative_source_transcripts=hg002_chrY_paternal_148.1,hg002_chrY_paternal_148.1;transcript_id=HG003_chrY_T0000206;gene_id=HG003_chrY_G0000075;Parent=HG003_chrY_T0000206;transcript_name=hg002_chrY_paternal_148.1;gene_name=LOC105379267;ID=exon:HG003_chrY_T0000206:0;Name=LOC105379267;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8853079	8854323	.	+	.	source_transcript=hg002_chrY_paternal_148.1;source_transcript_name=hg002_chrY_paternal_148.1;source_gene=hg002_chrY_paternal_148;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_148;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_148.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_148.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379267;alternative_source_transcripts=hg002_chrY_paternal_148.1,hg002_chrY_paternal_148.1;transcript_id=HG003_chrY_T0000206;gene_id=HG003_chrY_G0000075;Parent=HG003_chrY_T0000206;transcript_name=hg002_chrY_paternal_148.1;gene_name=LOC105379267;ID=intron:HG003_chrY_T0000206:0;Name=LOC105379267;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8854324	8854398	.	+	.	source_transcript=hg002_chrY_paternal_148.1;source_transcript_name=hg002_chrY_paternal_148.1;source_gene=hg002_chrY_paternal_148;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_148;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_148.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_148.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379267;alternative_source_transcripts=hg002_chrY_paternal_148.1,hg002_chrY_paternal_148.1;transcript_id=HG003_chrY_T0000206;gene_id=HG003_chrY_G0000075;Parent=HG003_chrY_T0000206;transcript_name=hg002_chrY_paternal_148.1;gene_name=LOC105379267;ID=exon:HG003_chrY_T0000206:1;Name=LOC105379267;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8854399	8865066	.	+	.	source_transcript=hg002_chrY_paternal_148.1;source_transcript_name=hg002_chrY_paternal_148.1;source_gene=hg002_chrY_paternal_148;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_148;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_148.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_148.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379267;alternative_source_transcripts=hg002_chrY_paternal_148.1,hg002_chrY_paternal_148.1;transcript_id=HG003_chrY_T0000206;gene_id=HG003_chrY_G0000075;Parent=HG003_chrY_T0000206;transcript_name=hg002_chrY_paternal_148.1;gene_name=LOC105379267;ID=intron:HG003_chrY_T0000206:1;Name=LOC105379267;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8865067	8865137	.	+	.	source_transcript=hg002_chrY_paternal_148.1;source_transcript_name=hg002_chrY_paternal_148.1;source_gene=hg002_chrY_paternal_148;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_148;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_148.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_148.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379267;alternative_source_transcripts=hg002_chrY_paternal_148.1,hg002_chrY_paternal_148.1;transcript_id=HG003_chrY_T0000206;gene_id=HG003_chrY_G0000075;Parent=HG003_chrY_T0000206;transcript_name=hg002_chrY_paternal_148.1;gene_name=LOC105379267;ID=exon:HG003_chrY_T0000206:2;Name=LOC105379267;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8877585	8883400	.	-	.	source_gene_common_name=RBMY1A3P;source_gene=hg002_chrY_paternal_149;alternative_source_transcripts=hg002_chrY_paternal_149.1,hg002_chrY_paternal_149.1;gene_id=HG003_chrY_G0000076;gene_biotype=transcribed_pseudogene;gene_name=RBMY1A3P;gene_sources=liftoff;ID=HG003_chrY_G0000076;Name=RBMY1A3P
HG003_chrY	CAT	transcript	8877585	8883400	1000	-	.	source_transcript=hg002_chrY_paternal_149.1;source_transcript_name=hg002_chrY_paternal_149.1;source_gene=hg002_chrY_paternal_149;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_149;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_149.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_149.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A3P;alternative_source_transcripts=hg002_chrY_paternal_149.1,hg002_chrY_paternal_149.1;transcript_id=HG003_chrY_T0000207;gene_id=HG003_chrY_G0000076;Parent=HG003_chrY_G0000076;transcript_name=hg002_chrY_paternal_149.1;gene_name=RBMY1A3P;ID=HG003_chrY_T0000207;Name=RBMY1A3P
HG003_chrY	CAT	exon	8877585	8877615	.	-	.	source_transcript=hg002_chrY_paternal_149.1;source_transcript_name=hg002_chrY_paternal_149.1;source_gene=hg002_chrY_paternal_149;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_149;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_149.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_149.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A3P;alternative_source_transcripts=hg002_chrY_paternal_149.1,hg002_chrY_paternal_149.1;transcript_id=HG003_chrY_T0000207;gene_id=HG003_chrY_G0000076;Parent=HG003_chrY_T0000207;transcript_name=hg002_chrY_paternal_149.1;gene_name=RBMY1A3P;ID=exon:HG003_chrY_T0000207:0;Name=RBMY1A3P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8877616	8879515	.	-	.	source_transcript=hg002_chrY_paternal_149.1;source_transcript_name=hg002_chrY_paternal_149.1;source_gene=hg002_chrY_paternal_149;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_149;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_149.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_149.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A3P;alternative_source_transcripts=hg002_chrY_paternal_149.1,hg002_chrY_paternal_149.1;transcript_id=HG003_chrY_T0000207;gene_id=HG003_chrY_G0000076;Parent=HG003_chrY_T0000207;transcript_name=hg002_chrY_paternal_149.1;gene_name=RBMY1A3P;ID=intron:HG003_chrY_T0000207:0;Name=RBMY1A3P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8879516	8879693	.	-	.	source_transcript=hg002_chrY_paternal_149.1;source_transcript_name=hg002_chrY_paternal_149.1;source_gene=hg002_chrY_paternal_149;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_149;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_149.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_149.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A3P;alternative_source_transcripts=hg002_chrY_paternal_149.1,hg002_chrY_paternal_149.1;transcript_id=HG003_chrY_T0000207;gene_id=HG003_chrY_G0000076;Parent=HG003_chrY_T0000207;transcript_name=hg002_chrY_paternal_149.1;gene_name=RBMY1A3P;ID=exon:HG003_chrY_T0000207:1;Name=RBMY1A3P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8879694	8882708	.	-	.	source_transcript=hg002_chrY_paternal_149.1;source_transcript_name=hg002_chrY_paternal_149.1;source_gene=hg002_chrY_paternal_149;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_149;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_149.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_149.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A3P;alternative_source_transcripts=hg002_chrY_paternal_149.1,hg002_chrY_paternal_149.1;transcript_id=HG003_chrY_T0000207;gene_id=HG003_chrY_G0000076;Parent=HG003_chrY_T0000207;transcript_name=hg002_chrY_paternal_149.1;gene_name=RBMY1A3P;ID=intron:HG003_chrY_T0000207:1;Name=RBMY1A3P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8882709	8882812	.	-	.	source_transcript=hg002_chrY_paternal_149.1;source_transcript_name=hg002_chrY_paternal_149.1;source_gene=hg002_chrY_paternal_149;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_149;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_149.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_149.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A3P;alternative_source_transcripts=hg002_chrY_paternal_149.1,hg002_chrY_paternal_149.1;transcript_id=HG003_chrY_T0000207;gene_id=HG003_chrY_G0000076;Parent=HG003_chrY_T0000207;transcript_name=hg002_chrY_paternal_149.1;gene_name=RBMY1A3P;ID=exon:HG003_chrY_T0000207:2;Name=RBMY1A3P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8882813	8883286	.	-	.	source_transcript=hg002_chrY_paternal_149.1;source_transcript_name=hg002_chrY_paternal_149.1;source_gene=hg002_chrY_paternal_149;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_149;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_149.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_149.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A3P;alternative_source_transcripts=hg002_chrY_paternal_149.1,hg002_chrY_paternal_149.1;transcript_id=HG003_chrY_T0000207;gene_id=HG003_chrY_G0000076;Parent=HG003_chrY_T0000207;transcript_name=hg002_chrY_paternal_149.1;gene_name=RBMY1A3P;ID=intron:HG003_chrY_T0000207:2;Name=RBMY1A3P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8883287	8883400	.	-	.	source_transcript=hg002_chrY_paternal_149.1;source_transcript_name=hg002_chrY_paternal_149.1;source_gene=hg002_chrY_paternal_149;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_149;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_149.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_149.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A3P;alternative_source_transcripts=hg002_chrY_paternal_149.1,hg002_chrY_paternal_149.1;transcript_id=HG003_chrY_T0000207;gene_id=HG003_chrY_G0000076;Parent=HG003_chrY_T0000207;transcript_name=hg002_chrY_paternal_149.1;gene_name=RBMY1A3P;ID=exon:HG003_chrY_T0000207:3;Name=RBMY1A3P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8890406	8895358	.	-	.	source_gene_common_name=TTTY20;source_gene=hg002_chrY_paternal_151;alternative_source_transcripts=hg002_chrY_paternal_151.1,hg002_chrY_paternal_151.1;gene_id=HG003_chrY_G0000077;gene_biotype=lncRNA;gene_name=TTTY20;gene_sources=liftoff;ID=HG003_chrY_G0000077;Name=TTTY20
HG003_chrY	CAT	transcript	8890406	8895358	1000	-	.	source_transcript=hg002_chrY_paternal_151.1;source_transcript_name=hg002_chrY_paternal_151.1;source_gene=hg002_chrY_paternal_151;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_151;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_151.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_151.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY20;alternative_source_transcripts=hg002_chrY_paternal_151.1,hg002_chrY_paternal_151.1;transcript_id=HG003_chrY_T0000208;gene_id=HG003_chrY_G0000077;Parent=HG003_chrY_G0000077;transcript_name=hg002_chrY_paternal_151.1;gene_name=TTTY20;ID=HG003_chrY_T0000208;Name=TTTY20
HG003_chrY	CAT	exon	8890406	8890582	.	-	.	source_transcript=hg002_chrY_paternal_151.1;source_transcript_name=hg002_chrY_paternal_151.1;source_gene=hg002_chrY_paternal_151;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_151;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_151.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_151.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY20;alternative_source_transcripts=hg002_chrY_paternal_151.1,hg002_chrY_paternal_151.1;transcript_id=HG003_chrY_T0000208;gene_id=HG003_chrY_G0000077;Parent=HG003_chrY_T0000208;transcript_name=hg002_chrY_paternal_151.1;gene_name=TTTY20;ID=exon:HG003_chrY_T0000208:0;Name=TTTY20;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8890583	8895276	.	-	.	source_transcript=hg002_chrY_paternal_151.1;source_transcript_name=hg002_chrY_paternal_151.1;source_gene=hg002_chrY_paternal_151;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_151;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_151.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_151.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY20;alternative_source_transcripts=hg002_chrY_paternal_151.1,hg002_chrY_paternal_151.1;transcript_id=HG003_chrY_T0000208;gene_id=HG003_chrY_G0000077;Parent=HG003_chrY_T0000208;transcript_name=hg002_chrY_paternal_151.1;gene_name=TTTY20;ID=intron:HG003_chrY_T0000208:0;Name=TTTY20;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8895277	8895358	.	-	.	source_transcript=hg002_chrY_paternal_151.1;source_transcript_name=hg002_chrY_paternal_151.1;source_gene=hg002_chrY_paternal_151;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_151;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_151.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_151.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY20;alternative_source_transcripts=hg002_chrY_paternal_151.1,hg002_chrY_paternal_151.1;transcript_id=HG003_chrY_T0000208;gene_id=HG003_chrY_G0000077;Parent=HG003_chrY_T0000208;transcript_name=hg002_chrY_paternal_151.1;gene_name=TTTY20;ID=exon:HG003_chrY_T0000208:1;Name=TTTY20;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8897990	8900786	.	+	.	source_gene_common_name=TSPY8;source_gene=hg002_chrY_paternal_152;alternative_source_transcripts=hg002_chrY_paternal_152.1,hg002_chrY_paternal_152.1;gene_id=HG003_chrY_G0000078;gene_biotype=protein_coding;gene_name=TSPY8;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000078;Name=TSPY8
HG003_chrY	CAT	transcript	8897990	8900786	100	+	.	source_transcript=hg002_chrY_paternal_152.1;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.1,hg002_chrY_paternal_152.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000209;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_G0000078;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=HG003_chrY_T0000209;Name=TSPY8
HG003_chrY	CAT	exon	8897990	8898521	.	+	.	source_transcript=hg002_chrY_paternal_152.1;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.1,hg002_chrY_paternal_152.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000209;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000209;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000209:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8898036	8898521	.	+	0	source_transcript=hg002_chrY_paternal_152.1;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.1,hg002_chrY_paternal_152.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000209;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000209;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000209:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	8898036	8898038	.	+	0	source_transcript=hg002_chrY_paternal_152.1;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.1,hg002_chrY_paternal_152.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000209;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000209;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=start_codon:HG003_chrY_T0000209;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8898522	8899128	.	+	.	source_transcript=hg002_chrY_paternal_152.1;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.1,hg002_chrY_paternal_152.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000209;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000209;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=intron:HG003_chrY_T0000209:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8899129	8899206	.	+	.	source_transcript=hg002_chrY_paternal_152.1;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.1,hg002_chrY_paternal_152.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000209;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000209;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000209:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8899129	8899206	.	+	0	source_transcript=hg002_chrY_paternal_152.1;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.1,hg002_chrY_paternal_152.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000209;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000209;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000209:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8899207	8899334	.	+	.	source_transcript=hg002_chrY_paternal_152.1;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.1,hg002_chrY_paternal_152.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000209;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000209;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=intron:HG003_chrY_T0000209:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8899335	8899446	.	+	.	source_transcript=hg002_chrY_paternal_152.1;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.1,hg002_chrY_paternal_152.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000209;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000209;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000209:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8899335	8899446	.	+	0	source_transcript=hg002_chrY_paternal_152.1;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.1,hg002_chrY_paternal_152.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000209;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000209;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000209:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8899447	8899547	.	+	.	source_transcript=hg002_chrY_paternal_152.1;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.1,hg002_chrY_paternal_152.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000209;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000209;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=intron:HG003_chrY_T0000209:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8899548	8899693	.	+	.	source_transcript=hg002_chrY_paternal_152.1;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.1,hg002_chrY_paternal_152.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000209;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000209;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000209:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8899548	8899693	.	+	2	source_transcript=hg002_chrY_paternal_152.1;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.1,hg002_chrY_paternal_152.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000209;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000209;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000209:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8899694	8899799	.	+	.	source_transcript=hg002_chrY_paternal_152.1;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.1,hg002_chrY_paternal_152.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000209;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000209;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=intron:HG003_chrY_T0000209:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8899800	8899881	.	+	.	source_transcript=hg002_chrY_paternal_152.1;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.1,hg002_chrY_paternal_152.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000209;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000209;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000209:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8899800	8899881	.	+	0	source_transcript=hg002_chrY_paternal_152.1;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.1,hg002_chrY_paternal_152.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000209;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000209;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000209:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8899882	8900575	.	+	.	source_transcript=hg002_chrY_paternal_152.1;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.1,hg002_chrY_paternal_152.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000209;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000209;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=intron:HG003_chrY_T0000209:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8900576	8900786	.	+	.	source_transcript=hg002_chrY_paternal_152.1;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.1,hg002_chrY_paternal_152.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000209;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000209;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000209:5;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8900576	8900598	.	+	2	source_transcript=hg002_chrY_paternal_152.1;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.1,hg002_chrY_paternal_152.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000209;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000209;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000209:5;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	8900596	8900598	.	+	0	source_transcript=hg002_chrY_paternal_152.1;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.1,hg002_chrY_paternal_152.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000209;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000209;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=stop_codon:HG003_chrY_T0000209;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8897990	8900786	100	+	.	source_transcript=hg002_chrY_paternal_152.2;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.2,hg002_chrY_paternal_152.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000210;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_G0000078;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=HG003_chrY_T0000210;Name=TSPY8
HG003_chrY	CAT	exon	8897990	8898521	.	+	.	source_transcript=hg002_chrY_paternal_152.2;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.2,hg002_chrY_paternal_152.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000210;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000210;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000210:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8898036	8898521	.	+	0	source_transcript=hg002_chrY_paternal_152.2;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.2,hg002_chrY_paternal_152.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000210;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000210;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000210:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	8898036	8898038	.	+	0	source_transcript=hg002_chrY_paternal_152.2;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.2,hg002_chrY_paternal_152.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000210;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000210;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=start_codon:HG003_chrY_T0000210;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8898522	8899128	.	+	.	source_transcript=hg002_chrY_paternal_152.2;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.2,hg002_chrY_paternal_152.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000210;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000210;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=intron:HG003_chrY_T0000210:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8899129	8899206	.	+	.	source_transcript=hg002_chrY_paternal_152.2;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.2,hg002_chrY_paternal_152.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000210;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000210;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000210:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8899129	8899206	.	+	0	source_transcript=hg002_chrY_paternal_152.2;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.2,hg002_chrY_paternal_152.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000210;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000210;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000210:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8899207	8899334	.	+	.	source_transcript=hg002_chrY_paternal_152.2;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.2,hg002_chrY_paternal_152.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000210;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000210;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=intron:HG003_chrY_T0000210:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8899335	8899446	.	+	.	source_transcript=hg002_chrY_paternal_152.2;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.2,hg002_chrY_paternal_152.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000210;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000210;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000210:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8899335	8899446	.	+	0	source_transcript=hg002_chrY_paternal_152.2;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.2,hg002_chrY_paternal_152.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000210;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000210;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000210:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8899447	8899547	.	+	.	source_transcript=hg002_chrY_paternal_152.2;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.2,hg002_chrY_paternal_152.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000210;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000210;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=intron:HG003_chrY_T0000210:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8899548	8899693	.	+	.	source_transcript=hg002_chrY_paternal_152.2;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.2,hg002_chrY_paternal_152.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000210;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000210;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000210:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8899548	8899693	.	+	2	source_transcript=hg002_chrY_paternal_152.2;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.2,hg002_chrY_paternal_152.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000210;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000210;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000210:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8899694	8899788	.	+	.	source_transcript=hg002_chrY_paternal_152.2;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.2,hg002_chrY_paternal_152.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000210;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000210;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=intron:HG003_chrY_T0000210:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8899789	8899881	.	+	.	source_transcript=hg002_chrY_paternal_152.2;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.2,hg002_chrY_paternal_152.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000210;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000210;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000210:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8899789	8899851	.	+	0	source_transcript=hg002_chrY_paternal_152.2;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.2,hg002_chrY_paternal_152.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000210;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000210;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000210:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	8899849	8899851	.	+	0	source_transcript=hg002_chrY_paternal_152.2;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.2,hg002_chrY_paternal_152.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000210;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000210;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=stop_codon:HG003_chrY_T0000210;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8899882	8900575	.	+	.	source_transcript=hg002_chrY_paternal_152.2;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.2,hg002_chrY_paternal_152.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000210;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000210;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=intron:HG003_chrY_T0000210:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8900576	8900786	.	+	.	source_transcript=hg002_chrY_paternal_152.2;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.2,hg002_chrY_paternal_152.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000210;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000210;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000210:5;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8897990	8900786	100	+	.	source_transcript=hg002_chrY_paternal_152.3;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.3,hg002_chrY_paternal_152.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000211;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_G0000078;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=HG003_chrY_T0000211;Name=TSPY8
HG003_chrY	CAT	exon	8897990	8898521	.	+	.	source_transcript=hg002_chrY_paternal_152.3;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.3,hg002_chrY_paternal_152.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000211;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000211;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000211:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8898036	8898521	.	+	0	source_transcript=hg002_chrY_paternal_152.3;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.3,hg002_chrY_paternal_152.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000211;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000211;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000211:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	8898036	8898038	.	+	0	source_transcript=hg002_chrY_paternal_152.3;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.3,hg002_chrY_paternal_152.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000211;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000211;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=start_codon:HG003_chrY_T0000211;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8898522	8899128	.	+	.	source_transcript=hg002_chrY_paternal_152.3;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.3,hg002_chrY_paternal_152.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000211;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000211;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=intron:HG003_chrY_T0000211:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8899129	8899206	.	+	.	source_transcript=hg002_chrY_paternal_152.3;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.3,hg002_chrY_paternal_152.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000211;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000211;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000211:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8899129	8899206	.	+	0	source_transcript=hg002_chrY_paternal_152.3;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.3,hg002_chrY_paternal_152.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000211;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000211;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000211:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8899207	8899334	.	+	.	source_transcript=hg002_chrY_paternal_152.3;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.3,hg002_chrY_paternal_152.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000211;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000211;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=intron:HG003_chrY_T0000211:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8899335	8899446	.	+	.	source_transcript=hg002_chrY_paternal_152.3;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.3,hg002_chrY_paternal_152.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000211;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000211;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000211:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8899335	8899446	.	+	0	source_transcript=hg002_chrY_paternal_152.3;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.3,hg002_chrY_paternal_152.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000211;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000211;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000211:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8899447	8899554	.	+	.	source_transcript=hg002_chrY_paternal_152.3;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.3,hg002_chrY_paternal_152.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000211;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000211;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=intron:HG003_chrY_T0000211:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8899555	8899693	.	+	.	source_transcript=hg002_chrY_paternal_152.3;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.3,hg002_chrY_paternal_152.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000211;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000211;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000211:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8899555	8899693	.	+	2	source_transcript=hg002_chrY_paternal_152.3;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.3,hg002_chrY_paternal_152.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000211;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000211;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000211:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8899694	8899799	.	+	.	source_transcript=hg002_chrY_paternal_152.3;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.3,hg002_chrY_paternal_152.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000211;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000211;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=intron:HG003_chrY_T0000211:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8899800	8899881	.	+	.	source_transcript=hg002_chrY_paternal_152.3;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.3,hg002_chrY_paternal_152.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000211;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000211;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000211:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8899800	8899851	.	+	1	source_transcript=hg002_chrY_paternal_152.3;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.3,hg002_chrY_paternal_152.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000211;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000211;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000211:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	8899849	8899851	.	+	0	source_transcript=hg002_chrY_paternal_152.3;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.3,hg002_chrY_paternal_152.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000211;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000211;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=stop_codon:HG003_chrY_T0000211;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8899882	8900575	.	+	.	source_transcript=hg002_chrY_paternal_152.3;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.3,hg002_chrY_paternal_152.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000211;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000211;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=intron:HG003_chrY_T0000211:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8900576	8900786	.	+	.	source_transcript=hg002_chrY_paternal_152.3;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.3,hg002_chrY_paternal_152.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000211;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000211;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000211:5;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8897990	8900786	1000	+	.	source_transcript=hg002_chrY_paternal_152.4;source_transcript_name=hg002_chrY_paternal_152.1;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_152.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.4,hg002_chrY_paternal_152.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000212;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_G0000078;transcript_name=hg002_chrY_paternal_152.1;gene_name=TSPY8;ID=HG003_chrY_T0000212;Name=TSPY8
HG003_chrY	CAT	exon	8897990	8898521	.	+	.	source_transcript=hg002_chrY_paternal_152.4;source_transcript_name=hg002_chrY_paternal_152.1;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_152.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.4,hg002_chrY_paternal_152.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000212;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000212;transcript_name=hg002_chrY_paternal_152.1;gene_name=TSPY8;ID=exon:HG003_chrY_T0000212:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8898522	8899128	.	+	.	source_transcript=hg002_chrY_paternal_152.4;source_transcript_name=hg002_chrY_paternal_152.1;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_152.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.4,hg002_chrY_paternal_152.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000212;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000212;transcript_name=hg002_chrY_paternal_152.1;gene_name=TSPY8;ID=intron:HG003_chrY_T0000212:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8899129	8899206	.	+	.	source_transcript=hg002_chrY_paternal_152.4;source_transcript_name=hg002_chrY_paternal_152.1;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_152.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.4,hg002_chrY_paternal_152.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000212;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000212;transcript_name=hg002_chrY_paternal_152.1;gene_name=TSPY8;ID=exon:HG003_chrY_T0000212:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8899207	8899334	.	+	.	source_transcript=hg002_chrY_paternal_152.4;source_transcript_name=hg002_chrY_paternal_152.1;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_152.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.4,hg002_chrY_paternal_152.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000212;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000212;transcript_name=hg002_chrY_paternal_152.1;gene_name=TSPY8;ID=intron:HG003_chrY_T0000212:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8899335	8899446	.	+	.	source_transcript=hg002_chrY_paternal_152.4;source_transcript_name=hg002_chrY_paternal_152.1;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_152.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.4,hg002_chrY_paternal_152.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000212;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000212;transcript_name=hg002_chrY_paternal_152.1;gene_name=TSPY8;ID=exon:HG003_chrY_T0000212:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8899447	8899554	.	+	.	source_transcript=hg002_chrY_paternal_152.4;source_transcript_name=hg002_chrY_paternal_152.1;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_152.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.4,hg002_chrY_paternal_152.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000212;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000212;transcript_name=hg002_chrY_paternal_152.1;gene_name=TSPY8;ID=intron:HG003_chrY_T0000212:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8899555	8899693	.	+	.	source_transcript=hg002_chrY_paternal_152.4;source_transcript_name=hg002_chrY_paternal_152.1;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_152.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.4,hg002_chrY_paternal_152.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000212;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000212;transcript_name=hg002_chrY_paternal_152.1;gene_name=TSPY8;ID=exon:HG003_chrY_T0000212:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8899694	8899788	.	+	.	source_transcript=hg002_chrY_paternal_152.4;source_transcript_name=hg002_chrY_paternal_152.1;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_152.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.4,hg002_chrY_paternal_152.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000212;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000212;transcript_name=hg002_chrY_paternal_152.1;gene_name=TSPY8;ID=intron:HG003_chrY_T0000212:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8899789	8899881	.	+	.	source_transcript=hg002_chrY_paternal_152.4;source_transcript_name=hg002_chrY_paternal_152.1;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_152.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.4,hg002_chrY_paternal_152.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000212;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000212;transcript_name=hg002_chrY_paternal_152.1;gene_name=TSPY8;ID=exon:HG003_chrY_T0000212:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8899882	8900575	.	+	.	source_transcript=hg002_chrY_paternal_152.4;source_transcript_name=hg002_chrY_paternal_152.1;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_152.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.4,hg002_chrY_paternal_152.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000212;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000212;transcript_name=hg002_chrY_paternal_152.1;gene_name=TSPY8;ID=intron:HG003_chrY_T0000212:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8900576	8900786	.	+	.	source_transcript=hg002_chrY_paternal_152.4;source_transcript_name=hg002_chrY_paternal_152.1;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_152.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.4,hg002_chrY_paternal_152.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000212;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000212;transcript_name=hg002_chrY_paternal_152.1;gene_name=TSPY8;ID=exon:HG003_chrY_T0000212:5;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8910055	8915673	.	-	.	source_gene_common_name=FAM197Y3;source_gene=hg002_chrY_paternal_153;alternative_source_transcripts=hg002_chrY_paternal_153.1,hg002_chrY_paternal_153.1;gene_id=HG003_chrY_G0000079;gene_biotype=lncRNA;gene_name=FAM197Y3;gene_sources=liftoff;ID=HG003_chrY_G0000079;Name=FAM197Y3
HG003_chrY	CAT	transcript	8910055	8915673	1000	-	.	source_transcript=hg002_chrY_paternal_153.1;source_transcript_name=hg002_chrY_paternal_153.1;source_gene=hg002_chrY_paternal_153;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_153;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_153.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_153.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_153.1,hg002_chrY_paternal_153.1;transcript_id=HG003_chrY_T0000213;gene_id=HG003_chrY_G0000079;Parent=HG003_chrY_G0000079;transcript_name=hg002_chrY_paternal_153.1;gene_name=FAM197Y3;ID=HG003_chrY_T0000213;Name=FAM197Y3
HG003_chrY	CAT	exon	8910055	8910114	.	-	.	source_transcript=hg002_chrY_paternal_153.1;source_transcript_name=hg002_chrY_paternal_153.1;source_gene=hg002_chrY_paternal_153;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_153;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_153.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_153.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_153.1,hg002_chrY_paternal_153.1;transcript_id=HG003_chrY_T0000213;gene_id=HG003_chrY_G0000079;Parent=HG003_chrY_T0000213;transcript_name=hg002_chrY_paternal_153.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000213:0;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8910115	8913664	.	-	.	source_transcript=hg002_chrY_paternal_153.1;source_transcript_name=hg002_chrY_paternal_153.1;source_gene=hg002_chrY_paternal_153;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_153;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_153.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_153.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_153.1,hg002_chrY_paternal_153.1;transcript_id=HG003_chrY_T0000213;gene_id=HG003_chrY_G0000079;Parent=HG003_chrY_T0000213;transcript_name=hg002_chrY_paternal_153.1;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000213:0;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8913665	8913823	.	-	.	source_transcript=hg002_chrY_paternal_153.1;source_transcript_name=hg002_chrY_paternal_153.1;source_gene=hg002_chrY_paternal_153;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_153;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_153.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_153.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_153.1,hg002_chrY_paternal_153.1;transcript_id=HG003_chrY_T0000213;gene_id=HG003_chrY_G0000079;Parent=HG003_chrY_T0000213;transcript_name=hg002_chrY_paternal_153.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000213:1;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8913824	8915339	.	-	.	source_transcript=hg002_chrY_paternal_153.1;source_transcript_name=hg002_chrY_paternal_153.1;source_gene=hg002_chrY_paternal_153;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_153;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_153.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_153.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_153.1,hg002_chrY_paternal_153.1;transcript_id=HG003_chrY_T0000213;gene_id=HG003_chrY_G0000079;Parent=HG003_chrY_T0000213;transcript_name=hg002_chrY_paternal_153.1;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000213:1;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8915340	8915485	.	-	.	source_transcript=hg002_chrY_paternal_153.1;source_transcript_name=hg002_chrY_paternal_153.1;source_gene=hg002_chrY_paternal_153;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_153;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_153.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_153.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_153.1,hg002_chrY_paternal_153.1;transcript_id=HG003_chrY_T0000213;gene_id=HG003_chrY_G0000079;Parent=HG003_chrY_T0000213;transcript_name=hg002_chrY_paternal_153.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000213:2;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8915486	8915571	.	-	.	source_transcript=hg002_chrY_paternal_153.1;source_transcript_name=hg002_chrY_paternal_153.1;source_gene=hg002_chrY_paternal_153;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_153;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_153.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_153.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_153.1,hg002_chrY_paternal_153.1;transcript_id=HG003_chrY_T0000213;gene_id=HG003_chrY_G0000079;Parent=HG003_chrY_T0000213;transcript_name=hg002_chrY_paternal_153.1;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000213:2;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8915572	8915673	.	-	.	source_transcript=hg002_chrY_paternal_153.1;source_transcript_name=hg002_chrY_paternal_153.1;source_gene=hg002_chrY_paternal_153;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_153;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_153.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_153.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_153.1,hg002_chrY_paternal_153.1;transcript_id=HG003_chrY_T0000213;gene_id=HG003_chrY_G0000079;Parent=HG003_chrY_T0000213;transcript_name=hg002_chrY_paternal_153.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000213:3;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8918286	8921082	.	+	.	source_gene_common_name=TSPY8;source_gene=hg002_chrY_paternal_154;alternative_source_transcripts=hg002_chrY_paternal_154.1,hg002_chrY_paternal_154.1;gene_id=HG003_chrY_G0000080;gene_biotype=protein_coding;gene_name=TSPY8;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000080;Name=TSPY8
HG003_chrY	CAT	transcript	8918286	8921082	100	+	.	source_transcript=hg002_chrY_paternal_154.1;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.1,hg002_chrY_paternal_154.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000214;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_G0000080;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=HG003_chrY_T0000214;Name=TSPY8
HG003_chrY	CAT	exon	8918286	8918817	.	+	.	source_transcript=hg002_chrY_paternal_154.1;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.1,hg002_chrY_paternal_154.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000214;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000214;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000214:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8918332	8918817	.	+	0	source_transcript=hg002_chrY_paternal_154.1;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.1,hg002_chrY_paternal_154.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000214;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000214;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000214:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	8918332	8918334	.	+	0	source_transcript=hg002_chrY_paternal_154.1;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.1,hg002_chrY_paternal_154.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000214;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000214;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=start_codon:HG003_chrY_T0000214;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8918818	8919424	.	+	.	source_transcript=hg002_chrY_paternal_154.1;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.1,hg002_chrY_paternal_154.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000214;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000214;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=intron:HG003_chrY_T0000214:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8919425	8919502	.	+	.	source_transcript=hg002_chrY_paternal_154.1;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.1,hg002_chrY_paternal_154.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000214;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000214;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000214:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8919425	8919502	.	+	0	source_transcript=hg002_chrY_paternal_154.1;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.1,hg002_chrY_paternal_154.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000214;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000214;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000214:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8919503	8919630	.	+	.	source_transcript=hg002_chrY_paternal_154.1;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.1,hg002_chrY_paternal_154.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000214;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000214;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=intron:HG003_chrY_T0000214:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8919631	8919742	.	+	.	source_transcript=hg002_chrY_paternal_154.1;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.1,hg002_chrY_paternal_154.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000214;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000214;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000214:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8919631	8919742	.	+	0	source_transcript=hg002_chrY_paternal_154.1;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.1,hg002_chrY_paternal_154.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000214;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000214;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000214:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8919743	8919843	.	+	.	source_transcript=hg002_chrY_paternal_154.1;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.1,hg002_chrY_paternal_154.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000214;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000214;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=intron:HG003_chrY_T0000214:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8919844	8919989	.	+	.	source_transcript=hg002_chrY_paternal_154.1;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.1,hg002_chrY_paternal_154.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000214;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000214;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000214:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8919844	8919989	.	+	2	source_transcript=hg002_chrY_paternal_154.1;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.1,hg002_chrY_paternal_154.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000214;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000214;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000214:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8919990	8920095	.	+	.	source_transcript=hg002_chrY_paternal_154.1;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.1,hg002_chrY_paternal_154.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000214;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000214;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=intron:HG003_chrY_T0000214:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8920096	8920177	.	+	.	source_transcript=hg002_chrY_paternal_154.1;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.1,hg002_chrY_paternal_154.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000214;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000214;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000214:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8920096	8920177	.	+	0	source_transcript=hg002_chrY_paternal_154.1;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.1,hg002_chrY_paternal_154.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000214;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000214;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000214:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8920178	8920871	.	+	.	source_transcript=hg002_chrY_paternal_154.1;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.1,hg002_chrY_paternal_154.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000214;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000214;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=intron:HG003_chrY_T0000214:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8920872	8921082	.	+	.	source_transcript=hg002_chrY_paternal_154.1;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.1,hg002_chrY_paternal_154.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000214;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000214;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000214:5;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8920872	8920894	.	+	2	source_transcript=hg002_chrY_paternal_154.1;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.1,hg002_chrY_paternal_154.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000214;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000214;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000214:5;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	8920892	8920894	.	+	0	source_transcript=hg002_chrY_paternal_154.1;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.1,hg002_chrY_paternal_154.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000214;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000214;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=stop_codon:HG003_chrY_T0000214;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8918286	8921082	100	+	.	source_transcript=hg002_chrY_paternal_154.2;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.2,hg002_chrY_paternal_154.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000215;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_G0000080;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=HG003_chrY_T0000215;Name=TSPY8
HG003_chrY	CAT	exon	8918286	8918817	.	+	.	source_transcript=hg002_chrY_paternal_154.2;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.2,hg002_chrY_paternal_154.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000215;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000215;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000215:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8918332	8918817	.	+	0	source_transcript=hg002_chrY_paternal_154.2;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.2,hg002_chrY_paternal_154.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000215;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000215;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000215:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	8918332	8918334	.	+	0	source_transcript=hg002_chrY_paternal_154.2;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.2,hg002_chrY_paternal_154.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000215;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000215;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=start_codon:HG003_chrY_T0000215;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8918818	8919424	.	+	.	source_transcript=hg002_chrY_paternal_154.2;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.2,hg002_chrY_paternal_154.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000215;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000215;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=intron:HG003_chrY_T0000215:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8919425	8919502	.	+	.	source_transcript=hg002_chrY_paternal_154.2;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.2,hg002_chrY_paternal_154.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000215;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000215;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000215:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8919425	8919502	.	+	0	source_transcript=hg002_chrY_paternal_154.2;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.2,hg002_chrY_paternal_154.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000215;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000215;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000215:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8919503	8919630	.	+	.	source_transcript=hg002_chrY_paternal_154.2;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.2,hg002_chrY_paternal_154.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000215;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000215;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=intron:HG003_chrY_T0000215:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8919631	8919742	.	+	.	source_transcript=hg002_chrY_paternal_154.2;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.2,hg002_chrY_paternal_154.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000215;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000215;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000215:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8919631	8919742	.	+	0	source_transcript=hg002_chrY_paternal_154.2;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.2,hg002_chrY_paternal_154.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000215;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000215;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000215:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8919743	8919843	.	+	.	source_transcript=hg002_chrY_paternal_154.2;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.2,hg002_chrY_paternal_154.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000215;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000215;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=intron:HG003_chrY_T0000215:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8919844	8919989	.	+	.	source_transcript=hg002_chrY_paternal_154.2;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.2,hg002_chrY_paternal_154.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000215;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000215;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000215:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8919844	8919989	.	+	2	source_transcript=hg002_chrY_paternal_154.2;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.2,hg002_chrY_paternal_154.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000215;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000215;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000215:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8919990	8920084	.	+	.	source_transcript=hg002_chrY_paternal_154.2;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.2,hg002_chrY_paternal_154.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000215;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000215;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=intron:HG003_chrY_T0000215:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8920085	8920177	.	+	.	source_transcript=hg002_chrY_paternal_154.2;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.2,hg002_chrY_paternal_154.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000215;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000215;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000215:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8920085	8920147	.	+	0	source_transcript=hg002_chrY_paternal_154.2;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.2,hg002_chrY_paternal_154.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000215;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000215;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000215:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	8920145	8920147	.	+	0	source_transcript=hg002_chrY_paternal_154.2;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.2,hg002_chrY_paternal_154.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000215;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000215;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=stop_codon:HG003_chrY_T0000215;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8920178	8920871	.	+	.	source_transcript=hg002_chrY_paternal_154.2;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.2,hg002_chrY_paternal_154.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000215;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000215;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=intron:HG003_chrY_T0000215:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8920872	8921082	.	+	.	source_transcript=hg002_chrY_paternal_154.2;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.2,hg002_chrY_paternal_154.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000215;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000215;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000215:5;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8918286	8921082	100	+	.	source_transcript=hg002_chrY_paternal_154.3;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.3,hg002_chrY_paternal_154.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000216;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_G0000080;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=HG003_chrY_T0000216;Name=TSPY8
HG003_chrY	CAT	exon	8918286	8918817	.	+	.	source_transcript=hg002_chrY_paternal_154.3;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.3,hg002_chrY_paternal_154.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000216;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000216;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000216:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8918332	8918817	.	+	0	source_transcript=hg002_chrY_paternal_154.3;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.3,hg002_chrY_paternal_154.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000216;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000216;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000216:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	8918332	8918334	.	+	0	source_transcript=hg002_chrY_paternal_154.3;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.3,hg002_chrY_paternal_154.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000216;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000216;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=start_codon:HG003_chrY_T0000216;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8918818	8919424	.	+	.	source_transcript=hg002_chrY_paternal_154.3;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.3,hg002_chrY_paternal_154.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000216;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000216;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=intron:HG003_chrY_T0000216:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8919425	8919502	.	+	.	source_transcript=hg002_chrY_paternal_154.3;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.3,hg002_chrY_paternal_154.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000216;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000216;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000216:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8919425	8919502	.	+	0	source_transcript=hg002_chrY_paternal_154.3;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.3,hg002_chrY_paternal_154.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000216;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000216;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000216:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8919503	8919630	.	+	.	source_transcript=hg002_chrY_paternal_154.3;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.3,hg002_chrY_paternal_154.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000216;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000216;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=intron:HG003_chrY_T0000216:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8919631	8919742	.	+	.	source_transcript=hg002_chrY_paternal_154.3;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.3,hg002_chrY_paternal_154.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000216;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000216;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000216:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8919631	8919742	.	+	0	source_transcript=hg002_chrY_paternal_154.3;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.3,hg002_chrY_paternal_154.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000216;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000216;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000216:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8919743	8919850	.	+	.	source_transcript=hg002_chrY_paternal_154.3;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.3,hg002_chrY_paternal_154.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000216;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000216;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=intron:HG003_chrY_T0000216:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8919851	8919989	.	+	.	source_transcript=hg002_chrY_paternal_154.3;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.3,hg002_chrY_paternal_154.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000216;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000216;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000216:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8919851	8919989	.	+	2	source_transcript=hg002_chrY_paternal_154.3;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.3,hg002_chrY_paternal_154.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000216;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000216;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000216:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8919990	8920095	.	+	.	source_transcript=hg002_chrY_paternal_154.3;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.3,hg002_chrY_paternal_154.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000216;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000216;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=intron:HG003_chrY_T0000216:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8920096	8920177	.	+	.	source_transcript=hg002_chrY_paternal_154.3;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.3,hg002_chrY_paternal_154.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000216;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000216;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000216:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8920096	8920147	.	+	1	source_transcript=hg002_chrY_paternal_154.3;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.3,hg002_chrY_paternal_154.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000216;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000216;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000216:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	8920145	8920147	.	+	0	source_transcript=hg002_chrY_paternal_154.3;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.3,hg002_chrY_paternal_154.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000216;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000216;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=stop_codon:HG003_chrY_T0000216;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8920178	8920871	.	+	.	source_transcript=hg002_chrY_paternal_154.3;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.3,hg002_chrY_paternal_154.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000216;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000216;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=intron:HG003_chrY_T0000216:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8920872	8921082	.	+	.	source_transcript=hg002_chrY_paternal_154.3;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.3,hg002_chrY_paternal_154.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000216;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000216;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000216:5;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8918286	8921082	1000	+	.	source_transcript=hg002_chrY_paternal_154.4;source_transcript_name=hg002_chrY_paternal_154.1;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_154.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.4,hg002_chrY_paternal_154.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000217;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_G0000080;transcript_name=hg002_chrY_paternal_154.1;gene_name=TSPY8;ID=HG003_chrY_T0000217;Name=TSPY8
HG003_chrY	CAT	exon	8918286	8918817	.	+	.	source_transcript=hg002_chrY_paternal_154.4;source_transcript_name=hg002_chrY_paternal_154.1;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_154.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.4,hg002_chrY_paternal_154.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000217;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000217;transcript_name=hg002_chrY_paternal_154.1;gene_name=TSPY8;ID=exon:HG003_chrY_T0000217:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8918818	8919424	.	+	.	source_transcript=hg002_chrY_paternal_154.4;source_transcript_name=hg002_chrY_paternal_154.1;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_154.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.4,hg002_chrY_paternal_154.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000217;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000217;transcript_name=hg002_chrY_paternal_154.1;gene_name=TSPY8;ID=intron:HG003_chrY_T0000217:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8919425	8919502	.	+	.	source_transcript=hg002_chrY_paternal_154.4;source_transcript_name=hg002_chrY_paternal_154.1;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_154.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.4,hg002_chrY_paternal_154.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000217;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000217;transcript_name=hg002_chrY_paternal_154.1;gene_name=TSPY8;ID=exon:HG003_chrY_T0000217:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8919503	8919630	.	+	.	source_transcript=hg002_chrY_paternal_154.4;source_transcript_name=hg002_chrY_paternal_154.1;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_154.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.4,hg002_chrY_paternal_154.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000217;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000217;transcript_name=hg002_chrY_paternal_154.1;gene_name=TSPY8;ID=intron:HG003_chrY_T0000217:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8919631	8919742	.	+	.	source_transcript=hg002_chrY_paternal_154.4;source_transcript_name=hg002_chrY_paternal_154.1;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_154.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.4,hg002_chrY_paternal_154.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000217;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000217;transcript_name=hg002_chrY_paternal_154.1;gene_name=TSPY8;ID=exon:HG003_chrY_T0000217:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8919743	8919850	.	+	.	source_transcript=hg002_chrY_paternal_154.4;source_transcript_name=hg002_chrY_paternal_154.1;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_154.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.4,hg002_chrY_paternal_154.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000217;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000217;transcript_name=hg002_chrY_paternal_154.1;gene_name=TSPY8;ID=intron:HG003_chrY_T0000217:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8919851	8919989	.	+	.	source_transcript=hg002_chrY_paternal_154.4;source_transcript_name=hg002_chrY_paternal_154.1;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_154.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.4,hg002_chrY_paternal_154.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000217;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000217;transcript_name=hg002_chrY_paternal_154.1;gene_name=TSPY8;ID=exon:HG003_chrY_T0000217:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8919990	8920084	.	+	.	source_transcript=hg002_chrY_paternal_154.4;source_transcript_name=hg002_chrY_paternal_154.1;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_154.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.4,hg002_chrY_paternal_154.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000217;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000217;transcript_name=hg002_chrY_paternal_154.1;gene_name=TSPY8;ID=intron:HG003_chrY_T0000217:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8920085	8920177	.	+	.	source_transcript=hg002_chrY_paternal_154.4;source_transcript_name=hg002_chrY_paternal_154.1;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_154.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.4,hg002_chrY_paternal_154.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000217;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000217;transcript_name=hg002_chrY_paternal_154.1;gene_name=TSPY8;ID=exon:HG003_chrY_T0000217:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8920178	8920871	.	+	.	source_transcript=hg002_chrY_paternal_154.4;source_transcript_name=hg002_chrY_paternal_154.1;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_154.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.4,hg002_chrY_paternal_154.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000217;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000217;transcript_name=hg002_chrY_paternal_154.1;gene_name=TSPY8;ID=intron:HG003_chrY_T0000217:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8920872	8921082	.	+	.	source_transcript=hg002_chrY_paternal_154.4;source_transcript_name=hg002_chrY_paternal_154.1;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_154.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.4,hg002_chrY_paternal_154.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000217;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000217;transcript_name=hg002_chrY_paternal_154.1;gene_name=TSPY8;ID=exon:HG003_chrY_T0000217:5;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8930400	8936011	.	-	.	source_gene_common_name=FAM197Y3;source_gene=hg002_chrY_paternal_155;alternative_source_transcripts=hg002_chrY_paternal_155.1,hg002_chrY_paternal_155.1;gene_id=HG003_chrY_G0000081;gene_biotype=lncRNA;gene_name=FAM197Y3;gene_sources=liftoff;ID=HG003_chrY_G0000081;Name=FAM197Y3
HG003_chrY	CAT	transcript	8930400	8936011	1000	-	.	source_transcript=hg002_chrY_paternal_155.1;source_transcript_name=hg002_chrY_paternal_155.1;source_gene=hg002_chrY_paternal_155;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_155;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_155.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_155.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_155.1,hg002_chrY_paternal_155.1;transcript_id=HG003_chrY_T0000218;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_G0000081;transcript_name=hg002_chrY_paternal_155.1;gene_name=FAM197Y3;ID=HG003_chrY_T0000218;Name=FAM197Y3
HG003_chrY	CAT	exon	8930400	8930459	.	-	.	source_transcript=hg002_chrY_paternal_155.1;source_transcript_name=hg002_chrY_paternal_155.1;source_gene=hg002_chrY_paternal_155;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_155;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_155.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_155.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_155.1,hg002_chrY_paternal_155.1;transcript_id=HG003_chrY_T0000218;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000218;transcript_name=hg002_chrY_paternal_155.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000218:0;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8930460	8934010	.	-	.	source_transcript=hg002_chrY_paternal_155.1;source_transcript_name=hg002_chrY_paternal_155.1;source_gene=hg002_chrY_paternal_155;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_155;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_155.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_155.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_155.1,hg002_chrY_paternal_155.1;transcript_id=HG003_chrY_T0000218;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000218;transcript_name=hg002_chrY_paternal_155.1;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000218:0;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8934011	8934169	.	-	.	source_transcript=hg002_chrY_paternal_155.1;source_transcript_name=hg002_chrY_paternal_155.1;source_gene=hg002_chrY_paternal_155;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_155;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_155.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_155.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_155.1,hg002_chrY_paternal_155.1;transcript_id=HG003_chrY_T0000218;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000218;transcript_name=hg002_chrY_paternal_155.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000218:1;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8934170	8935677	.	-	.	source_transcript=hg002_chrY_paternal_155.1;source_transcript_name=hg002_chrY_paternal_155.1;source_gene=hg002_chrY_paternal_155;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_155;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_155.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_155.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_155.1,hg002_chrY_paternal_155.1;transcript_id=HG003_chrY_T0000218;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000218;transcript_name=hg002_chrY_paternal_155.1;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000218:1;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8935678	8935823	.	-	.	source_transcript=hg002_chrY_paternal_155.1;source_transcript_name=hg002_chrY_paternal_155.1;source_gene=hg002_chrY_paternal_155;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_155;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_155.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_155.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_155.1,hg002_chrY_paternal_155.1;transcript_id=HG003_chrY_T0000218;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000218;transcript_name=hg002_chrY_paternal_155.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000218:2;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8935824	8935909	.	-	.	source_transcript=hg002_chrY_paternal_155.1;source_transcript_name=hg002_chrY_paternal_155.1;source_gene=hg002_chrY_paternal_155;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_155;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_155.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_155.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_155.1,hg002_chrY_paternal_155.1;transcript_id=HG003_chrY_T0000218;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000218;transcript_name=hg002_chrY_paternal_155.1;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000218:2;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8935910	8936011	.	-	.	source_transcript=hg002_chrY_paternal_155.1;source_transcript_name=hg002_chrY_paternal_155.1;source_gene=hg002_chrY_paternal_155;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_155;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_155.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_155.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_155.1,hg002_chrY_paternal_155.1;transcript_id=HG003_chrY_T0000218;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000218;transcript_name=hg002_chrY_paternal_155.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000218:3;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8938625	8941421	.	+	.	source_gene_common_name=TSPY8;source_gene=hg002_chrY_paternal_156;alternative_source_transcripts=hg002_chrY_paternal_156.1,hg002_chrY_paternal_156.1;gene_id=HG003_chrY_G0000082;gene_biotype=protein_coding;gene_name=TSPY8;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000082;Name=TSPY8
HG003_chrY	CAT	transcript	8938625	8941421	100	+	.	source_transcript=hg002_chrY_paternal_156.1;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.1,hg002_chrY_paternal_156.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000219;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_G0000082;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=HG003_chrY_T0000219;Name=TSPY8
HG003_chrY	CAT	exon	8938625	8939156	.	+	.	source_transcript=hg002_chrY_paternal_156.1;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.1,hg002_chrY_paternal_156.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000219;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000219;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000219:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8938671	8939156	.	+	0	source_transcript=hg002_chrY_paternal_156.1;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.1,hg002_chrY_paternal_156.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000219;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000219;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000219:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	8938671	8938673	.	+	0	source_transcript=hg002_chrY_paternal_156.1;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.1,hg002_chrY_paternal_156.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000219;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000219;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=start_codon:HG003_chrY_T0000219;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8939157	8939763	.	+	.	source_transcript=hg002_chrY_paternal_156.1;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.1,hg002_chrY_paternal_156.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000219;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000219;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=intron:HG003_chrY_T0000219:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8939764	8939841	.	+	.	source_transcript=hg002_chrY_paternal_156.1;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.1,hg002_chrY_paternal_156.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000219;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000219;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000219:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8939764	8939841	.	+	0	source_transcript=hg002_chrY_paternal_156.1;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.1,hg002_chrY_paternal_156.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000219;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000219;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000219:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8939842	8939969	.	+	.	source_transcript=hg002_chrY_paternal_156.1;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.1,hg002_chrY_paternal_156.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000219;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000219;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=intron:HG003_chrY_T0000219:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8939970	8940081	.	+	.	source_transcript=hg002_chrY_paternal_156.1;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.1,hg002_chrY_paternal_156.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000219;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000219;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000219:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8939970	8940081	.	+	0	source_transcript=hg002_chrY_paternal_156.1;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.1,hg002_chrY_paternal_156.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000219;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000219;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000219:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8940082	8940182	.	+	.	source_transcript=hg002_chrY_paternal_156.1;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.1,hg002_chrY_paternal_156.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000219;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000219;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=intron:HG003_chrY_T0000219:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8940183	8940328	.	+	.	source_transcript=hg002_chrY_paternal_156.1;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.1,hg002_chrY_paternal_156.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000219;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000219;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000219:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8940183	8940328	.	+	2	source_transcript=hg002_chrY_paternal_156.1;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.1,hg002_chrY_paternal_156.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000219;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000219;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000219:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8940329	8940434	.	+	.	source_transcript=hg002_chrY_paternal_156.1;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.1,hg002_chrY_paternal_156.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000219;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000219;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=intron:HG003_chrY_T0000219:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8940435	8940516	.	+	.	source_transcript=hg002_chrY_paternal_156.1;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.1,hg002_chrY_paternal_156.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000219;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000219;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000219:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8940435	8940516	.	+	0	source_transcript=hg002_chrY_paternal_156.1;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.1,hg002_chrY_paternal_156.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000219;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000219;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000219:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8940517	8941210	.	+	.	source_transcript=hg002_chrY_paternal_156.1;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.1,hg002_chrY_paternal_156.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000219;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000219;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=intron:HG003_chrY_T0000219:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8941211	8941421	.	+	.	source_transcript=hg002_chrY_paternal_156.1;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.1,hg002_chrY_paternal_156.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000219;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000219;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000219:5;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8941211	8941233	.	+	2	source_transcript=hg002_chrY_paternal_156.1;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.1,hg002_chrY_paternal_156.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000219;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000219;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000219:5;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	8941231	8941233	.	+	0	source_transcript=hg002_chrY_paternal_156.1;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.1,hg002_chrY_paternal_156.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000219;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000219;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=stop_codon:HG003_chrY_T0000219;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8938625	8941421	100	+	.	source_transcript=hg002_chrY_paternal_156.2;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.2,hg002_chrY_paternal_156.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000220;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_G0000082;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=HG003_chrY_T0000220;Name=TSPY8
HG003_chrY	CAT	exon	8938625	8939156	.	+	.	source_transcript=hg002_chrY_paternal_156.2;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.2,hg002_chrY_paternal_156.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000220;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000220;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000220:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8938671	8939156	.	+	0	source_transcript=hg002_chrY_paternal_156.2;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.2,hg002_chrY_paternal_156.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000220;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000220;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000220:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	8938671	8938673	.	+	0	source_transcript=hg002_chrY_paternal_156.2;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.2,hg002_chrY_paternal_156.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000220;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000220;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=start_codon:HG003_chrY_T0000220;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8939157	8939763	.	+	.	source_transcript=hg002_chrY_paternal_156.2;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.2,hg002_chrY_paternal_156.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000220;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000220;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=intron:HG003_chrY_T0000220:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8939764	8939841	.	+	.	source_transcript=hg002_chrY_paternal_156.2;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.2,hg002_chrY_paternal_156.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000220;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000220;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000220:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8939764	8939841	.	+	0	source_transcript=hg002_chrY_paternal_156.2;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.2,hg002_chrY_paternal_156.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000220;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000220;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000220:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8939842	8939969	.	+	.	source_transcript=hg002_chrY_paternal_156.2;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.2,hg002_chrY_paternal_156.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000220;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000220;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=intron:HG003_chrY_T0000220:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8939970	8940081	.	+	.	source_transcript=hg002_chrY_paternal_156.2;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.2,hg002_chrY_paternal_156.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000220;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000220;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000220:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8939970	8940081	.	+	0	source_transcript=hg002_chrY_paternal_156.2;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.2,hg002_chrY_paternal_156.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000220;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000220;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000220:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8940082	8940182	.	+	.	source_transcript=hg002_chrY_paternal_156.2;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.2,hg002_chrY_paternal_156.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000220;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000220;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=intron:HG003_chrY_T0000220:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8940183	8940328	.	+	.	source_transcript=hg002_chrY_paternal_156.2;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.2,hg002_chrY_paternal_156.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000220;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000220;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000220:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8940183	8940328	.	+	2	source_transcript=hg002_chrY_paternal_156.2;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.2,hg002_chrY_paternal_156.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000220;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000220;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000220:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8940329	8940423	.	+	.	source_transcript=hg002_chrY_paternal_156.2;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.2,hg002_chrY_paternal_156.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000220;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000220;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=intron:HG003_chrY_T0000220:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8940424	8940516	.	+	.	source_transcript=hg002_chrY_paternal_156.2;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.2,hg002_chrY_paternal_156.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000220;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000220;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000220:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8940424	8940486	.	+	0	source_transcript=hg002_chrY_paternal_156.2;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.2,hg002_chrY_paternal_156.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000220;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000220;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000220:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	8940484	8940486	.	+	0	source_transcript=hg002_chrY_paternal_156.2;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.2,hg002_chrY_paternal_156.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000220;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000220;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=stop_codon:HG003_chrY_T0000220;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8940517	8941210	.	+	.	source_transcript=hg002_chrY_paternal_156.2;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.2,hg002_chrY_paternal_156.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000220;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000220;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=intron:HG003_chrY_T0000220:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8941211	8941421	.	+	.	source_transcript=hg002_chrY_paternal_156.2;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.2,hg002_chrY_paternal_156.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000220;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000220;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000220:5;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8938625	8941421	100	+	.	source_transcript=hg002_chrY_paternal_156.3;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.3,hg002_chrY_paternal_156.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000221;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_G0000082;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=HG003_chrY_T0000221;Name=TSPY8
HG003_chrY	CAT	exon	8938625	8939156	.	+	.	source_transcript=hg002_chrY_paternal_156.3;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.3,hg002_chrY_paternal_156.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000221;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000221;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000221:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8938671	8939156	.	+	0	source_transcript=hg002_chrY_paternal_156.3;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.3,hg002_chrY_paternal_156.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000221;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000221;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000221:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	8938671	8938673	.	+	0	source_transcript=hg002_chrY_paternal_156.3;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.3,hg002_chrY_paternal_156.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000221;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000221;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=start_codon:HG003_chrY_T0000221;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8939157	8939763	.	+	.	source_transcript=hg002_chrY_paternal_156.3;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.3,hg002_chrY_paternal_156.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000221;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000221;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=intron:HG003_chrY_T0000221:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8939764	8939841	.	+	.	source_transcript=hg002_chrY_paternal_156.3;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.3,hg002_chrY_paternal_156.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000221;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000221;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000221:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8939764	8939841	.	+	0	source_transcript=hg002_chrY_paternal_156.3;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.3,hg002_chrY_paternal_156.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000221;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000221;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000221:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8939842	8939969	.	+	.	source_transcript=hg002_chrY_paternal_156.3;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.3,hg002_chrY_paternal_156.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000221;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000221;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=intron:HG003_chrY_T0000221:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8939970	8940081	.	+	.	source_transcript=hg002_chrY_paternal_156.3;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.3,hg002_chrY_paternal_156.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000221;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000221;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000221:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8939970	8940081	.	+	0	source_transcript=hg002_chrY_paternal_156.3;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.3,hg002_chrY_paternal_156.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000221;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000221;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000221:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8940082	8940189	.	+	.	source_transcript=hg002_chrY_paternal_156.3;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.3,hg002_chrY_paternal_156.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000221;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000221;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=intron:HG003_chrY_T0000221:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8940190	8940328	.	+	.	source_transcript=hg002_chrY_paternal_156.3;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.3,hg002_chrY_paternal_156.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000221;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000221;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000221:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8940190	8940328	.	+	2	source_transcript=hg002_chrY_paternal_156.3;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.3,hg002_chrY_paternal_156.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000221;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000221;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000221:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8940329	8940434	.	+	.	source_transcript=hg002_chrY_paternal_156.3;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.3,hg002_chrY_paternal_156.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000221;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000221;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=intron:HG003_chrY_T0000221:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8940435	8940516	.	+	.	source_transcript=hg002_chrY_paternal_156.3;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.3,hg002_chrY_paternal_156.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000221;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000221;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000221:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8940435	8940486	.	+	1	source_transcript=hg002_chrY_paternal_156.3;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.3,hg002_chrY_paternal_156.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000221;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000221;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000221:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	8940484	8940486	.	+	0	source_transcript=hg002_chrY_paternal_156.3;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.3,hg002_chrY_paternal_156.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000221;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000221;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=stop_codon:HG003_chrY_T0000221;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8940517	8941210	.	+	.	source_transcript=hg002_chrY_paternal_156.3;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.3,hg002_chrY_paternal_156.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000221;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000221;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=intron:HG003_chrY_T0000221:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8941211	8941421	.	+	.	source_transcript=hg002_chrY_paternal_156.3;source_transcript_name=hg002_chrY_paternal_156.4;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_156.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.3,hg002_chrY_paternal_156.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000221;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000221;transcript_name=hg002_chrY_paternal_156.4;gene_name=TSPY8;ID=exon:HG003_chrY_T0000221:5;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8938625	8941421	1000	+	.	source_transcript=hg002_chrY_paternal_156.4;source_transcript_name=hg002_chrY_paternal_156.1;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_156.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.4,hg002_chrY_paternal_156.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000222;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_G0000082;transcript_name=hg002_chrY_paternal_156.1;gene_name=TSPY8;ID=HG003_chrY_T0000222;Name=TSPY8
HG003_chrY	CAT	exon	8938625	8939156	.	+	.	source_transcript=hg002_chrY_paternal_156.4;source_transcript_name=hg002_chrY_paternal_156.1;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_156.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.4,hg002_chrY_paternal_156.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000222;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000222;transcript_name=hg002_chrY_paternal_156.1;gene_name=TSPY8;ID=exon:HG003_chrY_T0000222:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8939157	8939763	.	+	.	source_transcript=hg002_chrY_paternal_156.4;source_transcript_name=hg002_chrY_paternal_156.1;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_156.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.4,hg002_chrY_paternal_156.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000222;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000222;transcript_name=hg002_chrY_paternal_156.1;gene_name=TSPY8;ID=intron:HG003_chrY_T0000222:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8939764	8939841	.	+	.	source_transcript=hg002_chrY_paternal_156.4;source_transcript_name=hg002_chrY_paternal_156.1;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_156.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.4,hg002_chrY_paternal_156.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000222;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000222;transcript_name=hg002_chrY_paternal_156.1;gene_name=TSPY8;ID=exon:HG003_chrY_T0000222:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8939842	8939969	.	+	.	source_transcript=hg002_chrY_paternal_156.4;source_transcript_name=hg002_chrY_paternal_156.1;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_156.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.4,hg002_chrY_paternal_156.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000222;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000222;transcript_name=hg002_chrY_paternal_156.1;gene_name=TSPY8;ID=intron:HG003_chrY_T0000222:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8939970	8940081	.	+	.	source_transcript=hg002_chrY_paternal_156.4;source_transcript_name=hg002_chrY_paternal_156.1;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_156.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.4,hg002_chrY_paternal_156.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000222;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000222;transcript_name=hg002_chrY_paternal_156.1;gene_name=TSPY8;ID=exon:HG003_chrY_T0000222:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8940082	8940189	.	+	.	source_transcript=hg002_chrY_paternal_156.4;source_transcript_name=hg002_chrY_paternal_156.1;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_156.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.4,hg002_chrY_paternal_156.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000222;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000222;transcript_name=hg002_chrY_paternal_156.1;gene_name=TSPY8;ID=intron:HG003_chrY_T0000222:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8940190	8940328	.	+	.	source_transcript=hg002_chrY_paternal_156.4;source_transcript_name=hg002_chrY_paternal_156.1;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_156.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.4,hg002_chrY_paternal_156.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000222;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000222;transcript_name=hg002_chrY_paternal_156.1;gene_name=TSPY8;ID=exon:HG003_chrY_T0000222:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8940329	8940423	.	+	.	source_transcript=hg002_chrY_paternal_156.4;source_transcript_name=hg002_chrY_paternal_156.1;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_156.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.4,hg002_chrY_paternal_156.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000222;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000222;transcript_name=hg002_chrY_paternal_156.1;gene_name=TSPY8;ID=intron:HG003_chrY_T0000222:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8940424	8940516	.	+	.	source_transcript=hg002_chrY_paternal_156.4;source_transcript_name=hg002_chrY_paternal_156.1;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_156.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.4,hg002_chrY_paternal_156.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000222;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000222;transcript_name=hg002_chrY_paternal_156.1;gene_name=TSPY8;ID=exon:HG003_chrY_T0000222:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8940517	8941210	.	+	.	source_transcript=hg002_chrY_paternal_156.4;source_transcript_name=hg002_chrY_paternal_156.1;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_156.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.4,hg002_chrY_paternal_156.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000222;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000222;transcript_name=hg002_chrY_paternal_156.1;gene_name=TSPY8;ID=intron:HG003_chrY_T0000222:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8941211	8941421	.	+	.	source_transcript=hg002_chrY_paternal_156.4;source_transcript_name=hg002_chrY_paternal_156.1;source_gene=hg002_chrY_paternal_156;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_156;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_156.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_156.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_156.4,hg002_chrY_paternal_156.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000222;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000222;transcript_name=hg002_chrY_paternal_156.1;gene_name=TSPY8;ID=exon:HG003_chrY_T0000222:5;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8950689	8956367	.	-	.	source_gene_common_name=FAM197Y2;source_gene=hg002_chrY_paternal_157;alternative_source_transcripts=hg002_chrY_paternal_157.1,hg002_chrY_paternal_157.1;gene_id=HG003_chrY_G0000083;gene_biotype=lncRNA;gene_name=FAM197Y2;gene_sources=liftoff;ID=HG003_chrY_G0000083;Name=FAM197Y2
HG003_chrY	CAT	transcript	8950689	8956367	1000	-	.	source_transcript=hg002_chrY_paternal_157.1;source_transcript_name=hg002_chrY_paternal_157.1;source_gene=hg002_chrY_paternal_157;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_157;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_157.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_157.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_157.1,hg002_chrY_paternal_157.1;transcript_id=HG003_chrY_T0000223;gene_id=HG003_chrY_G0000083;Parent=HG003_chrY_G0000083;transcript_name=hg002_chrY_paternal_157.1;gene_name=FAM197Y2;ID=HG003_chrY_T0000223;Name=FAM197Y2
HG003_chrY	CAT	exon	8950689	8950748	.	-	.	source_transcript=hg002_chrY_paternal_157.1;source_transcript_name=hg002_chrY_paternal_157.1;source_gene=hg002_chrY_paternal_157;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_157;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_157.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_157.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_157.1,hg002_chrY_paternal_157.1;transcript_id=HG003_chrY_T0000223;gene_id=HG003_chrY_G0000083;Parent=HG003_chrY_T0000223;transcript_name=hg002_chrY_paternal_157.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000223:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8950749	8954298	.	-	.	source_transcript=hg002_chrY_paternal_157.1;source_transcript_name=hg002_chrY_paternal_157.1;source_gene=hg002_chrY_paternal_157;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_157;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_157.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_157.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_157.1,hg002_chrY_paternal_157.1;transcript_id=HG003_chrY_T0000223;gene_id=HG003_chrY_G0000083;Parent=HG003_chrY_T0000223;transcript_name=hg002_chrY_paternal_157.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000223:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8954299	8954457	.	-	.	source_transcript=hg002_chrY_paternal_157.1;source_transcript_name=hg002_chrY_paternal_157.1;source_gene=hg002_chrY_paternal_157;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_157;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_157.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_157.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_157.1,hg002_chrY_paternal_157.1;transcript_id=HG003_chrY_T0000223;gene_id=HG003_chrY_G0000083;Parent=HG003_chrY_T0000223;transcript_name=hg002_chrY_paternal_157.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000223:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8954458	8955944	.	-	.	source_transcript=hg002_chrY_paternal_157.1;source_transcript_name=hg002_chrY_paternal_157.1;source_gene=hg002_chrY_paternal_157;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_157;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_157.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_157.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_157.1,hg002_chrY_paternal_157.1;transcript_id=HG003_chrY_T0000223;gene_id=HG003_chrY_G0000083;Parent=HG003_chrY_T0000223;transcript_name=hg002_chrY_paternal_157.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000223:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8955945	8956090	.	-	.	source_transcript=hg002_chrY_paternal_157.1;source_transcript_name=hg002_chrY_paternal_157.1;source_gene=hg002_chrY_paternal_157;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_157;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_157.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_157.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_157.1,hg002_chrY_paternal_157.1;transcript_id=HG003_chrY_T0000223;gene_id=HG003_chrY_G0000083;Parent=HG003_chrY_T0000223;transcript_name=hg002_chrY_paternal_157.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000223:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8956091	8956176	.	-	.	source_transcript=hg002_chrY_paternal_157.1;source_transcript_name=hg002_chrY_paternal_157.1;source_gene=hg002_chrY_paternal_157;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_157;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_157.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_157.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_157.1,hg002_chrY_paternal_157.1;transcript_id=HG003_chrY_T0000223;gene_id=HG003_chrY_G0000083;Parent=HG003_chrY_T0000223;transcript_name=hg002_chrY_paternal_157.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000223:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8956177	8956367	.	-	.	source_transcript=hg002_chrY_paternal_157.1;source_transcript_name=hg002_chrY_paternal_157.1;source_gene=hg002_chrY_paternal_157;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_157;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_157.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_157.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_157.1,hg002_chrY_paternal_157.1;transcript_id=HG003_chrY_T0000223;gene_id=HG003_chrY_G0000083;Parent=HG003_chrY_T0000223;transcript_name=hg002_chrY_paternal_157.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000223:3;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8958892	8961688	.	+	.	source_gene_common_name=TSPY1;source_gene=hg002_chrY_paternal_158;alternative_source_transcripts=hg002_chrY_paternal_158.1,hg002_chrY_paternal_158.1;gene_id=HG003_chrY_G0000084;gene_biotype=protein_coding;gene_name=TSPY1;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000084;Name=TSPY1
HG003_chrY	CAT	transcript	8958892	8961688	100	+	.	source_transcript=hg002_chrY_paternal_158.1;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.1,hg002_chrY_paternal_158.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000224;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_G0000084;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=HG003_chrY_T0000224;Name=TSPY1
HG003_chrY	CAT	exon	8958892	8959423	.	+	.	source_transcript=hg002_chrY_paternal_158.1;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.1,hg002_chrY_paternal_158.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000224;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000224;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000224:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8958938	8959423	.	+	0	source_transcript=hg002_chrY_paternal_158.1;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.1,hg002_chrY_paternal_158.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000224;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000224;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000224:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	8958938	8958940	.	+	0	source_transcript=hg002_chrY_paternal_158.1;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.1,hg002_chrY_paternal_158.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000224;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000224;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=start_codon:HG003_chrY_T0000224;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8959424	8960030	.	+	.	source_transcript=hg002_chrY_paternal_158.1;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.1,hg002_chrY_paternal_158.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000224;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000224;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000224:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8960031	8960108	.	+	.	source_transcript=hg002_chrY_paternal_158.1;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.1,hg002_chrY_paternal_158.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000224;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000224;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000224:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8960031	8960108	.	+	0	source_transcript=hg002_chrY_paternal_158.1;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.1,hg002_chrY_paternal_158.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000224;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000224;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000224:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8960109	8960236	.	+	.	source_transcript=hg002_chrY_paternal_158.1;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.1,hg002_chrY_paternal_158.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000224;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000224;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000224:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8960237	8960348	.	+	.	source_transcript=hg002_chrY_paternal_158.1;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.1,hg002_chrY_paternal_158.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000224;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000224;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000224:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8960237	8960348	.	+	0	source_transcript=hg002_chrY_paternal_158.1;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.1,hg002_chrY_paternal_158.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000224;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000224;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000224:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8960349	8960449	.	+	.	source_transcript=hg002_chrY_paternal_158.1;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.1,hg002_chrY_paternal_158.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000224;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000224;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000224:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8960450	8960595	.	+	.	source_transcript=hg002_chrY_paternal_158.1;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.1,hg002_chrY_paternal_158.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000224;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000224;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000224:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8960450	8960595	.	+	2	source_transcript=hg002_chrY_paternal_158.1;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.1,hg002_chrY_paternal_158.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000224;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000224;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000224:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8960596	8960690	.	+	.	source_transcript=hg002_chrY_paternal_158.1;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.1,hg002_chrY_paternal_158.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000224;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000224;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000224:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8960691	8960783	.	+	.	source_transcript=hg002_chrY_paternal_158.1;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.1,hg002_chrY_paternal_158.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000224;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000224;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000224:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8960691	8960753	.	+	0	source_transcript=hg002_chrY_paternal_158.1;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.1,hg002_chrY_paternal_158.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000224;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000224;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000224:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	8960751	8960753	.	+	0	source_transcript=hg002_chrY_paternal_158.1;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.1,hg002_chrY_paternal_158.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000224;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000224;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=stop_codon:HG003_chrY_T0000224;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8960784	8961477	.	+	.	source_transcript=hg002_chrY_paternal_158.1;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.1,hg002_chrY_paternal_158.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000224;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000224;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000224:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8961478	8961688	.	+	.	source_transcript=hg002_chrY_paternal_158.1;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.1,hg002_chrY_paternal_158.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000224;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000224;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000224:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8958892	8961688	100	+	.	source_transcript=hg002_chrY_paternal_158.2;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.2,hg002_chrY_paternal_158.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000225;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_G0000084;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=HG003_chrY_T0000225;Name=TSPY1
HG003_chrY	CAT	exon	8958892	8959024	.	+	.	source_transcript=hg002_chrY_paternal_158.2;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.2,hg002_chrY_paternal_158.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000225;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000225;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000225:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8958938	8959024	.	+	0	source_transcript=hg002_chrY_paternal_158.2;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.2,hg002_chrY_paternal_158.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000225;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000225;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000225:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	8958938	8958940	.	+	0	source_transcript=hg002_chrY_paternal_158.2;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.2,hg002_chrY_paternal_158.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000225;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000225;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=start_codon:HG003_chrY_T0000225;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8959025	8959285	.	+	.	source_transcript=hg002_chrY_paternal_158.2;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.2,hg002_chrY_paternal_158.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000225;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000225;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000225:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8959286	8959423	.	+	.	source_transcript=hg002_chrY_paternal_158.2;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.2,hg002_chrY_paternal_158.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000225;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000225;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000225:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8959286	8959423	.	+	0	source_transcript=hg002_chrY_paternal_158.2;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.2,hg002_chrY_paternal_158.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000225;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000225;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000225:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8959424	8960030	.	+	.	source_transcript=hg002_chrY_paternal_158.2;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.2,hg002_chrY_paternal_158.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000225;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000225;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000225:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8960031	8960108	.	+	.	source_transcript=hg002_chrY_paternal_158.2;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.2,hg002_chrY_paternal_158.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000225;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000225;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000225:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8960031	8960108	.	+	0	source_transcript=hg002_chrY_paternal_158.2;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.2,hg002_chrY_paternal_158.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000225;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000225;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000225:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8960109	8960236	.	+	.	source_transcript=hg002_chrY_paternal_158.2;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.2,hg002_chrY_paternal_158.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000225;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000225;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000225:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8960237	8960348	.	+	.	source_transcript=hg002_chrY_paternal_158.2;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.2,hg002_chrY_paternal_158.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000225;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000225;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000225:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8960237	8960348	.	+	0	source_transcript=hg002_chrY_paternal_158.2;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.2,hg002_chrY_paternal_158.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000225;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000225;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000225:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8960349	8960449	.	+	.	source_transcript=hg002_chrY_paternal_158.2;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.2,hg002_chrY_paternal_158.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000225;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000225;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000225:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8960450	8960595	.	+	.	source_transcript=hg002_chrY_paternal_158.2;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.2,hg002_chrY_paternal_158.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000225;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000225;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000225:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8960450	8960595	.	+	2	source_transcript=hg002_chrY_paternal_158.2;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.2,hg002_chrY_paternal_158.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000225;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000225;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000225:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8960596	8960701	.	+	.	source_transcript=hg002_chrY_paternal_158.2;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.2,hg002_chrY_paternal_158.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000225;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000225;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000225:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8960702	8960783	.	+	.	source_transcript=hg002_chrY_paternal_158.2;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.2,hg002_chrY_paternal_158.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000225;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000225;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000225:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8960702	8960783	.	+	0	source_transcript=hg002_chrY_paternal_158.2;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.2,hg002_chrY_paternal_158.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000225;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000225;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000225:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8960784	8961477	.	+	.	source_transcript=hg002_chrY_paternal_158.2;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.2,hg002_chrY_paternal_158.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000225;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000225;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000225:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8961478	8961688	.	+	.	source_transcript=hg002_chrY_paternal_158.2;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.2,hg002_chrY_paternal_158.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000225;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000225;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000225:6;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8961478	8961500	.	+	2	source_transcript=hg002_chrY_paternal_158.2;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.2,hg002_chrY_paternal_158.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000225;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000225;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000225:6;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	8961498	8961500	.	+	0	source_transcript=hg002_chrY_paternal_158.2;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.2,hg002_chrY_paternal_158.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000225;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000225;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=stop_codon:HG003_chrY_T0000225;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8958892	8961688	100	+	.	source_transcript=hg002_chrY_paternal_158.3;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.3,hg002_chrY_paternal_158.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000226;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_G0000084;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=HG003_chrY_T0000226;Name=TSPY1
HG003_chrY	CAT	exon	8958892	8959423	.	+	.	source_transcript=hg002_chrY_paternal_158.3;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.3,hg002_chrY_paternal_158.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000226;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000226;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000226:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8958938	8959423	.	+	0	source_transcript=hg002_chrY_paternal_158.3;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.3,hg002_chrY_paternal_158.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000226;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000226;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000226:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	8958938	8958940	.	+	0	source_transcript=hg002_chrY_paternal_158.3;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.3,hg002_chrY_paternal_158.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000226;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000226;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=start_codon:HG003_chrY_T0000226;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8959424	8960030	.	+	.	source_transcript=hg002_chrY_paternal_158.3;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.3,hg002_chrY_paternal_158.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000226;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000226;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000226:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8960031	8960108	.	+	.	source_transcript=hg002_chrY_paternal_158.3;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.3,hg002_chrY_paternal_158.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000226;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000226;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000226:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8960031	8960108	.	+	0	source_transcript=hg002_chrY_paternal_158.3;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.3,hg002_chrY_paternal_158.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000226;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000226;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000226:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8960109	8960236	.	+	.	source_transcript=hg002_chrY_paternal_158.3;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.3,hg002_chrY_paternal_158.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000226;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000226;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000226:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8960237	8960348	.	+	.	source_transcript=hg002_chrY_paternal_158.3;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.3,hg002_chrY_paternal_158.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000226;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000226;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000226:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8960237	8960348	.	+	0	source_transcript=hg002_chrY_paternal_158.3;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.3,hg002_chrY_paternal_158.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000226;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000226;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000226:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8960349	8960449	.	+	.	source_transcript=hg002_chrY_paternal_158.3;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.3,hg002_chrY_paternal_158.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000226;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000226;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000226:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8960450	8960595	.	+	.	source_transcript=hg002_chrY_paternal_158.3;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.3,hg002_chrY_paternal_158.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000226;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000226;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000226:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8960450	8960595	.	+	2	source_transcript=hg002_chrY_paternal_158.3;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.3,hg002_chrY_paternal_158.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000226;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000226;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000226:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8960596	8960701	.	+	.	source_transcript=hg002_chrY_paternal_158.3;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.3,hg002_chrY_paternal_158.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000226;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000226;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000226:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8960702	8960783	.	+	.	source_transcript=hg002_chrY_paternal_158.3;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.3,hg002_chrY_paternal_158.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000226;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000226;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000226:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8960702	8960783	.	+	0	source_transcript=hg002_chrY_paternal_158.3;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.3,hg002_chrY_paternal_158.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000226;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000226;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000226:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8960784	8961477	.	+	.	source_transcript=hg002_chrY_paternal_158.3;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.3,hg002_chrY_paternal_158.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000226;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000226;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000226:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8961478	8961688	.	+	.	source_transcript=hg002_chrY_paternal_158.3;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.3,hg002_chrY_paternal_158.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000226;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000226;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000226:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8961478	8961500	.	+	2	source_transcript=hg002_chrY_paternal_158.3;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.3,hg002_chrY_paternal_158.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000226;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000226;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000226:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	8961498	8961500	.	+	0	source_transcript=hg002_chrY_paternal_158.3;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.3,hg002_chrY_paternal_158.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000226;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000226;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=stop_codon:HG003_chrY_T0000226;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8958892	8961688	100	+	.	source_transcript=hg002_chrY_paternal_158.4;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.4,hg002_chrY_paternal_158.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000227;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_G0000084;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=HG003_chrY_T0000227;Name=TSPY1
HG003_chrY	CAT	exon	8958892	8959423	.	+	.	source_transcript=hg002_chrY_paternal_158.4;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.4,hg002_chrY_paternal_158.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000227;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000227;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000227:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8958938	8959423	.	+	0	source_transcript=hg002_chrY_paternal_158.4;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.4,hg002_chrY_paternal_158.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000227;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000227;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000227:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	8958938	8958940	.	+	0	source_transcript=hg002_chrY_paternal_158.4;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.4,hg002_chrY_paternal_158.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000227;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000227;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=start_codon:HG003_chrY_T0000227;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8959424	8960030	.	+	.	source_transcript=hg002_chrY_paternal_158.4;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.4,hg002_chrY_paternal_158.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000227;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000227;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000227:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8960031	8960108	.	+	.	source_transcript=hg002_chrY_paternal_158.4;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.4,hg002_chrY_paternal_158.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000227;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000227;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000227:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8960031	8960108	.	+	0	source_transcript=hg002_chrY_paternal_158.4;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.4,hg002_chrY_paternal_158.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000227;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000227;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000227:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8960109	8960236	.	+	.	source_transcript=hg002_chrY_paternal_158.4;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.4,hg002_chrY_paternal_158.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000227;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000227;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000227:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8960237	8960348	.	+	.	source_transcript=hg002_chrY_paternal_158.4;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.4,hg002_chrY_paternal_158.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000227;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000227;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000227:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8960237	8960348	.	+	0	source_transcript=hg002_chrY_paternal_158.4;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.4,hg002_chrY_paternal_158.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000227;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000227;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000227:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8960349	8960456	.	+	.	source_transcript=hg002_chrY_paternal_158.4;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.4,hg002_chrY_paternal_158.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000227;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000227;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000227:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8960457	8960595	.	+	.	source_transcript=hg002_chrY_paternal_158.4;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.4,hg002_chrY_paternal_158.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000227;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000227;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000227:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8960457	8960595	.	+	2	source_transcript=hg002_chrY_paternal_158.4;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.4,hg002_chrY_paternal_158.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000227;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000227;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000227:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8960596	8960701	.	+	.	source_transcript=hg002_chrY_paternal_158.4;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.4,hg002_chrY_paternal_158.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000227;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000227;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000227:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8960702	8960783	.	+	.	source_transcript=hg002_chrY_paternal_158.4;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.4,hg002_chrY_paternal_158.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000227;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000227;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000227:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8960702	8960753	.	+	1	source_transcript=hg002_chrY_paternal_158.4;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.4,hg002_chrY_paternal_158.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000227;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000227;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000227:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	8960751	8960753	.	+	0	source_transcript=hg002_chrY_paternal_158.4;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.4,hg002_chrY_paternal_158.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000227;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000227;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=stop_codon:HG003_chrY_T0000227;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8960784	8961477	.	+	.	source_transcript=hg002_chrY_paternal_158.4;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.4,hg002_chrY_paternal_158.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000227;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000227;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000227:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8961478	8961688	.	+	.	source_transcript=hg002_chrY_paternal_158.4;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.4,hg002_chrY_paternal_158.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000227;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000227;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000227:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8958892	8961688	1000	+	.	source_transcript=hg002_chrY_paternal_158.5;source_transcript_name=hg002_chrY_paternal_158.1;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_158.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.5,hg002_chrY_paternal_158.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000228;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_G0000084;transcript_name=hg002_chrY_paternal_158.1;gene_name=TSPY1;ID=HG003_chrY_T0000228;Name=TSPY1
HG003_chrY	CAT	exon	8958892	8959423	.	+	.	source_transcript=hg002_chrY_paternal_158.5;source_transcript_name=hg002_chrY_paternal_158.1;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_158.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.5,hg002_chrY_paternal_158.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000228;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000228;transcript_name=hg002_chrY_paternal_158.1;gene_name=TSPY1;ID=exon:HG003_chrY_T0000228:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8959424	8960030	.	+	.	source_transcript=hg002_chrY_paternal_158.5;source_transcript_name=hg002_chrY_paternal_158.1;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_158.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.5,hg002_chrY_paternal_158.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000228;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000228;transcript_name=hg002_chrY_paternal_158.1;gene_name=TSPY1;ID=intron:HG003_chrY_T0000228:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8960031	8960108	.	+	.	source_transcript=hg002_chrY_paternal_158.5;source_transcript_name=hg002_chrY_paternal_158.1;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_158.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.5,hg002_chrY_paternal_158.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000228;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000228;transcript_name=hg002_chrY_paternal_158.1;gene_name=TSPY1;ID=exon:HG003_chrY_T0000228:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8960109	8960236	.	+	.	source_transcript=hg002_chrY_paternal_158.5;source_transcript_name=hg002_chrY_paternal_158.1;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_158.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.5,hg002_chrY_paternal_158.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000228;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000228;transcript_name=hg002_chrY_paternal_158.1;gene_name=TSPY1;ID=intron:HG003_chrY_T0000228:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8960237	8960348	.	+	.	source_transcript=hg002_chrY_paternal_158.5;source_transcript_name=hg002_chrY_paternal_158.1;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_158.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.5,hg002_chrY_paternal_158.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000228;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000228;transcript_name=hg002_chrY_paternal_158.1;gene_name=TSPY1;ID=exon:HG003_chrY_T0000228:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8960349	8960456	.	+	.	source_transcript=hg002_chrY_paternal_158.5;source_transcript_name=hg002_chrY_paternal_158.1;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_158.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.5,hg002_chrY_paternal_158.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000228;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000228;transcript_name=hg002_chrY_paternal_158.1;gene_name=TSPY1;ID=intron:HG003_chrY_T0000228:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8960457	8960595	.	+	.	source_transcript=hg002_chrY_paternal_158.5;source_transcript_name=hg002_chrY_paternal_158.1;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_158.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.5,hg002_chrY_paternal_158.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000228;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000228;transcript_name=hg002_chrY_paternal_158.1;gene_name=TSPY1;ID=exon:HG003_chrY_T0000228:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8960596	8960690	.	+	.	source_transcript=hg002_chrY_paternal_158.5;source_transcript_name=hg002_chrY_paternal_158.1;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_158.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.5,hg002_chrY_paternal_158.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000228;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000228;transcript_name=hg002_chrY_paternal_158.1;gene_name=TSPY1;ID=intron:HG003_chrY_T0000228:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8960691	8960783	.	+	.	source_transcript=hg002_chrY_paternal_158.5;source_transcript_name=hg002_chrY_paternal_158.1;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_158.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.5,hg002_chrY_paternal_158.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000228;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000228;transcript_name=hg002_chrY_paternal_158.1;gene_name=TSPY1;ID=exon:HG003_chrY_T0000228:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8960784	8961477	.	+	.	source_transcript=hg002_chrY_paternal_158.5;source_transcript_name=hg002_chrY_paternal_158.1;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_158.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.5,hg002_chrY_paternal_158.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000228;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000228;transcript_name=hg002_chrY_paternal_158.1;gene_name=TSPY1;ID=intron:HG003_chrY_T0000228:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8961478	8961688	.	+	.	source_transcript=hg002_chrY_paternal_158.5;source_transcript_name=hg002_chrY_paternal_158.1;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_158.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.5,hg002_chrY_paternal_158.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000228;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000228;transcript_name=hg002_chrY_paternal_158.1;gene_name=TSPY1;ID=exon:HG003_chrY_T0000228:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8970981	8976673	.	-	.	source_gene_common_name=FAM197Y2;source_gene=hg002_chrY_paternal_159;alternative_source_transcripts=hg002_chrY_paternal_159.1,hg002_chrY_paternal_159.1;gene_id=HG003_chrY_G0000085;gene_biotype=lncRNA;gene_name=FAM197Y2;gene_sources=liftoff;ID=HG003_chrY_G0000085;Name=FAM197Y2
HG003_chrY	CAT	transcript	8970981	8976673	1000	-	.	source_transcript=hg002_chrY_paternal_159.1;source_transcript_name=hg002_chrY_paternal_159.1;source_gene=hg002_chrY_paternal_159;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_159;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_159.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_159.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_159.1,hg002_chrY_paternal_159.1;transcript_id=HG003_chrY_T0000229;gene_id=HG003_chrY_G0000085;Parent=HG003_chrY_G0000085;transcript_name=hg002_chrY_paternal_159.1;gene_name=FAM197Y2;ID=HG003_chrY_T0000229;Name=FAM197Y2
HG003_chrY	CAT	exon	8970981	8971040	.	-	.	source_transcript=hg002_chrY_paternal_159.1;source_transcript_name=hg002_chrY_paternal_159.1;source_gene=hg002_chrY_paternal_159;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_159;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_159.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_159.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_159.1,hg002_chrY_paternal_159.1;transcript_id=HG003_chrY_T0000229;gene_id=HG003_chrY_G0000085;Parent=HG003_chrY_T0000229;transcript_name=hg002_chrY_paternal_159.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000229:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8971041	8974589	.	-	.	source_transcript=hg002_chrY_paternal_159.1;source_transcript_name=hg002_chrY_paternal_159.1;source_gene=hg002_chrY_paternal_159;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_159;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_159.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_159.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_159.1,hg002_chrY_paternal_159.1;transcript_id=HG003_chrY_T0000229;gene_id=HG003_chrY_G0000085;Parent=HG003_chrY_T0000229;transcript_name=hg002_chrY_paternal_159.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000229:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8974590	8974748	.	-	.	source_transcript=hg002_chrY_paternal_159.1;source_transcript_name=hg002_chrY_paternal_159.1;source_gene=hg002_chrY_paternal_159;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_159;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_159.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_159.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_159.1,hg002_chrY_paternal_159.1;transcript_id=HG003_chrY_T0000229;gene_id=HG003_chrY_G0000085;Parent=HG003_chrY_T0000229;transcript_name=hg002_chrY_paternal_159.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000229:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8974749	8976250	.	-	.	source_transcript=hg002_chrY_paternal_159.1;source_transcript_name=hg002_chrY_paternal_159.1;source_gene=hg002_chrY_paternal_159;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_159;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_159.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_159.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_159.1,hg002_chrY_paternal_159.1;transcript_id=HG003_chrY_T0000229;gene_id=HG003_chrY_G0000085;Parent=HG003_chrY_T0000229;transcript_name=hg002_chrY_paternal_159.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000229:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8976251	8976396	.	-	.	source_transcript=hg002_chrY_paternal_159.1;source_transcript_name=hg002_chrY_paternal_159.1;source_gene=hg002_chrY_paternal_159;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_159;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_159.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_159.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_159.1,hg002_chrY_paternal_159.1;transcript_id=HG003_chrY_T0000229;gene_id=HG003_chrY_G0000085;Parent=HG003_chrY_T0000229;transcript_name=hg002_chrY_paternal_159.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000229:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8976397	8976482	.	-	.	source_transcript=hg002_chrY_paternal_159.1;source_transcript_name=hg002_chrY_paternal_159.1;source_gene=hg002_chrY_paternal_159;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_159;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_159.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_159.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_159.1,hg002_chrY_paternal_159.1;transcript_id=HG003_chrY_T0000229;gene_id=HG003_chrY_G0000085;Parent=HG003_chrY_T0000229;transcript_name=hg002_chrY_paternal_159.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000229:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8976483	8976673	.	-	.	source_transcript=hg002_chrY_paternal_159.1;source_transcript_name=hg002_chrY_paternal_159.1;source_gene=hg002_chrY_paternal_159;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_159;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_159.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_159.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_159.1,hg002_chrY_paternal_159.1;transcript_id=HG003_chrY_T0000229;gene_id=HG003_chrY_G0000085;Parent=HG003_chrY_T0000229;transcript_name=hg002_chrY_paternal_159.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000229:3;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8979197	8982011	.	+	.	source_gene_common_name=TSPY4;source_gene=hg002_chrY_paternal_160;alternative_source_transcripts=hg002_chrY_paternal_160.1,hg002_chrY_paternal_160.1;gene_id=HG003_chrY_G0000086;gene_biotype=protein_coding;gene_name=TSPY4;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000086;Name=TSPY4
HG003_chrY	CAT	transcript	8979197	8982011	100	+	.	source_transcript=hg002_chrY_paternal_160.1;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.1,hg002_chrY_paternal_160.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000230;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_G0000086;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=HG003_chrY_T0000230;Name=TSPY4
HG003_chrY	CAT	exon	8979197	8979746	.	+	.	source_transcript=hg002_chrY_paternal_160.1;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.1,hg002_chrY_paternal_160.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000230;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000230;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000230:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8979243	8979746	.	+	0	source_transcript=hg002_chrY_paternal_160.1;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.1,hg002_chrY_paternal_160.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000230;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000230;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000230:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	8979243	8979245	.	+	0	source_transcript=hg002_chrY_paternal_160.1;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.1,hg002_chrY_paternal_160.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000230;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000230;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=start_codon:HG003_chrY_T0000230;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8979747	8980353	.	+	.	source_transcript=hg002_chrY_paternal_160.1;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.1,hg002_chrY_paternal_160.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000230;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000230;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000230:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8980354	8980431	.	+	.	source_transcript=hg002_chrY_paternal_160.1;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.1,hg002_chrY_paternal_160.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000230;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000230;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000230:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8980354	8980431	.	+	0	source_transcript=hg002_chrY_paternal_160.1;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.1,hg002_chrY_paternal_160.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000230;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000230;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000230:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8980432	8980559	.	+	.	source_transcript=hg002_chrY_paternal_160.1;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.1,hg002_chrY_paternal_160.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000230;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000230;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000230:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8980560	8980671	.	+	.	source_transcript=hg002_chrY_paternal_160.1;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.1,hg002_chrY_paternal_160.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000230;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000230;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000230:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8980560	8980671	.	+	0	source_transcript=hg002_chrY_paternal_160.1;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.1,hg002_chrY_paternal_160.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000230;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000230;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000230:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8980672	8980772	.	+	.	source_transcript=hg002_chrY_paternal_160.1;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.1,hg002_chrY_paternal_160.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000230;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000230;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000230:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8980773	8980918	.	+	.	source_transcript=hg002_chrY_paternal_160.1;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.1,hg002_chrY_paternal_160.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000230;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000230;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000230:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8980773	8980918	.	+	2	source_transcript=hg002_chrY_paternal_160.1;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.1,hg002_chrY_paternal_160.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000230;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000230;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000230:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8980919	8981024	.	+	.	source_transcript=hg002_chrY_paternal_160.1;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.1,hg002_chrY_paternal_160.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000230;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000230;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000230:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8981025	8981106	.	+	.	source_transcript=hg002_chrY_paternal_160.1;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.1,hg002_chrY_paternal_160.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000230;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000230;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000230:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8981025	8981106	.	+	0	source_transcript=hg002_chrY_paternal_160.1;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.1,hg002_chrY_paternal_160.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000230;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000230;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000230:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8981107	8981800	.	+	.	source_transcript=hg002_chrY_paternal_160.1;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.1,hg002_chrY_paternal_160.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000230;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000230;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000230:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8981801	8982011	.	+	.	source_transcript=hg002_chrY_paternal_160.1;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.1,hg002_chrY_paternal_160.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000230;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000230;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000230:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8981801	8981823	.	+	2	source_transcript=hg002_chrY_paternal_160.1;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.1,hg002_chrY_paternal_160.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000230;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000230;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000230:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	8981821	8981823	.	+	0	source_transcript=hg002_chrY_paternal_160.1;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.1,hg002_chrY_paternal_160.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000230;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000230;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=stop_codon:HG003_chrY_T0000230;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8979197	8982011	100	+	.	source_transcript=hg002_chrY_paternal_160.2;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.2,hg002_chrY_paternal_160.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000231;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_G0000086;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=HG003_chrY_T0000231;Name=TSPY4
HG003_chrY	CAT	exon	8979197	8979746	.	+	.	source_transcript=hg002_chrY_paternal_160.2;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.2,hg002_chrY_paternal_160.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000231;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000231;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000231:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8979243	8979746	.	+	0	source_transcript=hg002_chrY_paternal_160.2;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.2,hg002_chrY_paternal_160.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000231;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000231;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000231:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	8979243	8979245	.	+	0	source_transcript=hg002_chrY_paternal_160.2;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.2,hg002_chrY_paternal_160.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000231;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000231;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=start_codon:HG003_chrY_T0000231;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8979747	8980353	.	+	.	source_transcript=hg002_chrY_paternal_160.2;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.2,hg002_chrY_paternal_160.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000231;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000231;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000231:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8980354	8980431	.	+	.	source_transcript=hg002_chrY_paternal_160.2;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.2,hg002_chrY_paternal_160.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000231;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000231;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000231:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8980354	8980431	.	+	0	source_transcript=hg002_chrY_paternal_160.2;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.2,hg002_chrY_paternal_160.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000231;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000231;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000231:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8980432	8980559	.	+	.	source_transcript=hg002_chrY_paternal_160.2;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.2,hg002_chrY_paternal_160.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000231;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000231;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000231:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8980560	8980671	.	+	.	source_transcript=hg002_chrY_paternal_160.2;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.2,hg002_chrY_paternal_160.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000231;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000231;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000231:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8980560	8980671	.	+	0	source_transcript=hg002_chrY_paternal_160.2;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.2,hg002_chrY_paternal_160.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000231;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000231;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000231:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8980672	8980772	.	+	.	source_transcript=hg002_chrY_paternal_160.2;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.2,hg002_chrY_paternal_160.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000231;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000231;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000231:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8980773	8980918	.	+	.	source_transcript=hg002_chrY_paternal_160.2;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.2,hg002_chrY_paternal_160.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000231;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000231;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000231:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8980773	8980918	.	+	2	source_transcript=hg002_chrY_paternal_160.2;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.2,hg002_chrY_paternal_160.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000231;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000231;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000231:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8980919	8981013	.	+	.	source_transcript=hg002_chrY_paternal_160.2;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.2,hg002_chrY_paternal_160.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000231;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000231;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000231:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8981014	8981106	.	+	.	source_transcript=hg002_chrY_paternal_160.2;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.2,hg002_chrY_paternal_160.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000231;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000231;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000231:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8981014	8981076	.	+	0	source_transcript=hg002_chrY_paternal_160.2;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.2,hg002_chrY_paternal_160.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000231;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000231;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000231:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	8981074	8981076	.	+	0	source_transcript=hg002_chrY_paternal_160.2;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.2,hg002_chrY_paternal_160.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000231;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000231;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=stop_codon:HG003_chrY_T0000231;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8981107	8981800	.	+	.	source_transcript=hg002_chrY_paternal_160.2;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.2,hg002_chrY_paternal_160.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000231;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000231;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000231:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8981801	8982011	.	+	.	source_transcript=hg002_chrY_paternal_160.2;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.2,hg002_chrY_paternal_160.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000231;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000231;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000231:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8979197	8982011	100	+	.	source_transcript=hg002_chrY_paternal_160.3;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.3,hg002_chrY_paternal_160.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000232;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_G0000086;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=HG003_chrY_T0000232;Name=TSPY4
HG003_chrY	CAT	exon	8979197	8979746	.	+	.	source_transcript=hg002_chrY_paternal_160.3;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.3,hg002_chrY_paternal_160.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000232;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000232;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000232:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8979243	8979746	.	+	0	source_transcript=hg002_chrY_paternal_160.3;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.3,hg002_chrY_paternal_160.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000232;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000232;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000232:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	8979243	8979245	.	+	0	source_transcript=hg002_chrY_paternal_160.3;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.3,hg002_chrY_paternal_160.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000232;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000232;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=start_codon:HG003_chrY_T0000232;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8979747	8980353	.	+	.	source_transcript=hg002_chrY_paternal_160.3;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.3,hg002_chrY_paternal_160.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000232;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000232;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000232:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8980354	8980431	.	+	.	source_transcript=hg002_chrY_paternal_160.3;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.3,hg002_chrY_paternal_160.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000232;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000232;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000232:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8980354	8980431	.	+	0	source_transcript=hg002_chrY_paternal_160.3;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.3,hg002_chrY_paternal_160.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000232;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000232;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000232:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8980432	8980559	.	+	.	source_transcript=hg002_chrY_paternal_160.3;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.3,hg002_chrY_paternal_160.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000232;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000232;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000232:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8980560	8980671	.	+	.	source_transcript=hg002_chrY_paternal_160.3;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.3,hg002_chrY_paternal_160.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000232;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000232;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000232:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8980560	8980671	.	+	0	source_transcript=hg002_chrY_paternal_160.3;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.3,hg002_chrY_paternal_160.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000232;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000232;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000232:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8980672	8980779	.	+	.	source_transcript=hg002_chrY_paternal_160.3;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.3,hg002_chrY_paternal_160.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000232;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000232;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000232:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8980780	8980918	.	+	.	source_transcript=hg002_chrY_paternal_160.3;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.3,hg002_chrY_paternal_160.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000232;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000232;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000232:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8980780	8980918	.	+	2	source_transcript=hg002_chrY_paternal_160.3;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.3,hg002_chrY_paternal_160.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000232;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000232;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000232:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8980919	8981024	.	+	.	source_transcript=hg002_chrY_paternal_160.3;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.3,hg002_chrY_paternal_160.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000232;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000232;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000232:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8981025	8981106	.	+	.	source_transcript=hg002_chrY_paternal_160.3;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.3,hg002_chrY_paternal_160.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000232;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000232;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000232:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8981025	8981076	.	+	1	source_transcript=hg002_chrY_paternal_160.3;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.3,hg002_chrY_paternal_160.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000232;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000232;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000232:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	8981074	8981076	.	+	0	source_transcript=hg002_chrY_paternal_160.3;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.3,hg002_chrY_paternal_160.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000232;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000232;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=stop_codon:HG003_chrY_T0000232;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8981107	8981800	.	+	.	source_transcript=hg002_chrY_paternal_160.3;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.3,hg002_chrY_paternal_160.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000232;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000232;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000232:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8981801	8982011	.	+	.	source_transcript=hg002_chrY_paternal_160.3;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.3,hg002_chrY_paternal_160.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000232;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000232;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000232:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8979197	8982011	1000	+	.	source_transcript=hg002_chrY_paternal_160.4;source_transcript_name=hg002_chrY_paternal_160.1;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_160.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.4,hg002_chrY_paternal_160.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000233;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_G0000086;transcript_name=hg002_chrY_paternal_160.1;gene_name=TSPY4;ID=HG003_chrY_T0000233;Name=TSPY4
HG003_chrY	CAT	exon	8979197	8979746	.	+	.	source_transcript=hg002_chrY_paternal_160.4;source_transcript_name=hg002_chrY_paternal_160.1;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_160.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.4,hg002_chrY_paternal_160.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000233;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000233;transcript_name=hg002_chrY_paternal_160.1;gene_name=TSPY4;ID=exon:HG003_chrY_T0000233:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8979747	8980353	.	+	.	source_transcript=hg002_chrY_paternal_160.4;source_transcript_name=hg002_chrY_paternal_160.1;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_160.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.4,hg002_chrY_paternal_160.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000233;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000233;transcript_name=hg002_chrY_paternal_160.1;gene_name=TSPY4;ID=intron:HG003_chrY_T0000233:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8980354	8980431	.	+	.	source_transcript=hg002_chrY_paternal_160.4;source_transcript_name=hg002_chrY_paternal_160.1;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_160.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.4,hg002_chrY_paternal_160.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000233;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000233;transcript_name=hg002_chrY_paternal_160.1;gene_name=TSPY4;ID=exon:HG003_chrY_T0000233:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8980432	8980559	.	+	.	source_transcript=hg002_chrY_paternal_160.4;source_transcript_name=hg002_chrY_paternal_160.1;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_160.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.4,hg002_chrY_paternal_160.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000233;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000233;transcript_name=hg002_chrY_paternal_160.1;gene_name=TSPY4;ID=intron:HG003_chrY_T0000233:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8980560	8980671	.	+	.	source_transcript=hg002_chrY_paternal_160.4;source_transcript_name=hg002_chrY_paternal_160.1;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_160.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.4,hg002_chrY_paternal_160.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000233;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000233;transcript_name=hg002_chrY_paternal_160.1;gene_name=TSPY4;ID=exon:HG003_chrY_T0000233:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8980672	8980779	.	+	.	source_transcript=hg002_chrY_paternal_160.4;source_transcript_name=hg002_chrY_paternal_160.1;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_160.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.4,hg002_chrY_paternal_160.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000233;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000233;transcript_name=hg002_chrY_paternal_160.1;gene_name=TSPY4;ID=intron:HG003_chrY_T0000233:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8980780	8980918	.	+	.	source_transcript=hg002_chrY_paternal_160.4;source_transcript_name=hg002_chrY_paternal_160.1;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_160.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.4,hg002_chrY_paternal_160.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000233;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000233;transcript_name=hg002_chrY_paternal_160.1;gene_name=TSPY4;ID=exon:HG003_chrY_T0000233:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8980919	8981013	.	+	.	source_transcript=hg002_chrY_paternal_160.4;source_transcript_name=hg002_chrY_paternal_160.1;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_160.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.4,hg002_chrY_paternal_160.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000233;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000233;transcript_name=hg002_chrY_paternal_160.1;gene_name=TSPY4;ID=intron:HG003_chrY_T0000233:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8981014	8981106	.	+	.	source_transcript=hg002_chrY_paternal_160.4;source_transcript_name=hg002_chrY_paternal_160.1;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_160.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.4,hg002_chrY_paternal_160.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000233;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000233;transcript_name=hg002_chrY_paternal_160.1;gene_name=TSPY4;ID=exon:HG003_chrY_T0000233:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8981107	8981800	.	+	.	source_transcript=hg002_chrY_paternal_160.4;source_transcript_name=hg002_chrY_paternal_160.1;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_160.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.4,hg002_chrY_paternal_160.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000233;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000233;transcript_name=hg002_chrY_paternal_160.1;gene_name=TSPY4;ID=intron:HG003_chrY_T0000233:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8981801	8982011	.	+	.	source_transcript=hg002_chrY_paternal_160.4;source_transcript_name=hg002_chrY_paternal_160.1;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_160.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_160.4,hg002_chrY_paternal_160.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000233;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000233;transcript_name=hg002_chrY_paternal_160.1;gene_name=TSPY4;ID=exon:HG003_chrY_T0000233:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8991316	8996916	.	-	.	source_gene_common_name=FAM197Y8;source_gene=hg002_chrY_paternal_161;alternative_source_transcripts=hg002_chrY_paternal_161.1,hg002_chrY_paternal_161.1;gene_id=HG003_chrY_G0000087;gene_biotype=lncRNA;gene_name=FAM197Y8;gene_sources=liftoff;ID=HG003_chrY_G0000087;Name=FAM197Y8
HG003_chrY	CAT	transcript	8991316	8996916	1000	-	.	source_transcript=hg002_chrY_paternal_161.1;source_transcript_name=hg002_chrY_paternal_161.1;source_gene=hg002_chrY_paternal_161;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_161;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_161.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_161.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;alternative_source_transcripts=hg002_chrY_paternal_161.1,hg002_chrY_paternal_161.1;transcript_id=HG003_chrY_T0000234;gene_id=HG003_chrY_G0000087;Parent=HG003_chrY_G0000087;transcript_name=hg002_chrY_paternal_161.1;gene_name=FAM197Y8;ID=HG003_chrY_T0000234;Name=FAM197Y8
HG003_chrY	CAT	exon	8991316	8991375	.	-	.	source_transcript=hg002_chrY_paternal_161.1;source_transcript_name=hg002_chrY_paternal_161.1;source_gene=hg002_chrY_paternal_161;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_161;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_161.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_161.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;alternative_source_transcripts=hg002_chrY_paternal_161.1,hg002_chrY_paternal_161.1;transcript_id=HG003_chrY_T0000234;gene_id=HG003_chrY_G0000087;Parent=HG003_chrY_T0000234;transcript_name=hg002_chrY_paternal_161.1;gene_name=FAM197Y8;ID=exon:HG003_chrY_T0000234:0;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8991376	8994925	.	-	.	source_transcript=hg002_chrY_paternal_161.1;source_transcript_name=hg002_chrY_paternal_161.1;source_gene=hg002_chrY_paternal_161;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_161;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_161.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_161.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;alternative_source_transcripts=hg002_chrY_paternal_161.1,hg002_chrY_paternal_161.1;transcript_id=HG003_chrY_T0000234;gene_id=HG003_chrY_G0000087;Parent=HG003_chrY_T0000234;transcript_name=hg002_chrY_paternal_161.1;gene_name=FAM197Y8;ID=intron:HG003_chrY_T0000234:0;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8994926	8995084	.	-	.	source_transcript=hg002_chrY_paternal_161.1;source_transcript_name=hg002_chrY_paternal_161.1;source_gene=hg002_chrY_paternal_161;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_161;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_161.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_161.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;alternative_source_transcripts=hg002_chrY_paternal_161.1,hg002_chrY_paternal_161.1;transcript_id=HG003_chrY_T0000234;gene_id=HG003_chrY_G0000087;Parent=HG003_chrY_T0000234;transcript_name=hg002_chrY_paternal_161.1;gene_name=FAM197Y8;ID=exon:HG003_chrY_T0000234:1;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8995085	8996582	.	-	.	source_transcript=hg002_chrY_paternal_161.1;source_transcript_name=hg002_chrY_paternal_161.1;source_gene=hg002_chrY_paternal_161;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_161;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_161.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_161.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;alternative_source_transcripts=hg002_chrY_paternal_161.1,hg002_chrY_paternal_161.1;transcript_id=HG003_chrY_T0000234;gene_id=HG003_chrY_G0000087;Parent=HG003_chrY_T0000234;transcript_name=hg002_chrY_paternal_161.1;gene_name=FAM197Y8;ID=intron:HG003_chrY_T0000234:1;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8996583	8996728	.	-	.	source_transcript=hg002_chrY_paternal_161.1;source_transcript_name=hg002_chrY_paternal_161.1;source_gene=hg002_chrY_paternal_161;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_161;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_161.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_161.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;alternative_source_transcripts=hg002_chrY_paternal_161.1,hg002_chrY_paternal_161.1;transcript_id=HG003_chrY_T0000234;gene_id=HG003_chrY_G0000087;Parent=HG003_chrY_T0000234;transcript_name=hg002_chrY_paternal_161.1;gene_name=FAM197Y8;ID=exon:HG003_chrY_T0000234:2;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8996729	8996814	.	-	.	source_transcript=hg002_chrY_paternal_161.1;source_transcript_name=hg002_chrY_paternal_161.1;source_gene=hg002_chrY_paternal_161;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_161;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_161.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_161.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;alternative_source_transcripts=hg002_chrY_paternal_161.1,hg002_chrY_paternal_161.1;transcript_id=HG003_chrY_T0000234;gene_id=HG003_chrY_G0000087;Parent=HG003_chrY_T0000234;transcript_name=hg002_chrY_paternal_161.1;gene_name=FAM197Y8;ID=intron:HG003_chrY_T0000234:2;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8996815	8996916	.	-	.	source_transcript=hg002_chrY_paternal_161.1;source_transcript_name=hg002_chrY_paternal_161.1;source_gene=hg002_chrY_paternal_161;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_161;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_161.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_161.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;alternative_source_transcripts=hg002_chrY_paternal_161.1,hg002_chrY_paternal_161.1;transcript_id=HG003_chrY_T0000234;gene_id=HG003_chrY_G0000087;Parent=HG003_chrY_T0000234;transcript_name=hg002_chrY_paternal_161.1;gene_name=FAM197Y8;ID=exon:HG003_chrY_T0000234:3;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8999529	9002343	.	+	.	source_gene_common_name=TSPY9;source_gene=hg002_chrY_paternal_162;alternative_source_transcripts=hg002_chrY_paternal_162.1,hg002_chrY_paternal_162.1;gene_id=HG003_chrY_G0000088;gene_biotype=protein_coding;gene_name=TSPY9;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000088;Name=TSPY9
HG003_chrY	CAT	transcript	8999529	9002343	100	+	.	source_transcript=hg002_chrY_paternal_162.1;source_transcript_name=hg002_chrY_paternal_162.2;source_gene=hg002_chrY_paternal_162;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_162;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_162.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_162.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_162.1,hg002_chrY_paternal_162.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000235;gene_id=HG003_chrY_G0000088;Parent=HG003_chrY_G0000088;transcript_name=hg002_chrY_paternal_162.2;gene_name=TSPY9;ID=HG003_chrY_T0000235;Name=TSPY9
HG003_chrY	CAT	exon	8999529	9000078	.	+	.	source_transcript=hg002_chrY_paternal_162.1;source_transcript_name=hg002_chrY_paternal_162.2;source_gene=hg002_chrY_paternal_162;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_162;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_162.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_162.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_162.1,hg002_chrY_paternal_162.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000235;gene_id=HG003_chrY_G0000088;Parent=HG003_chrY_T0000235;transcript_name=hg002_chrY_paternal_162.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000235:0;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8999575	9000078	.	+	0	source_transcript=hg002_chrY_paternal_162.1;source_transcript_name=hg002_chrY_paternal_162.2;source_gene=hg002_chrY_paternal_162;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_162;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_162.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_162.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_162.1,hg002_chrY_paternal_162.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000235;gene_id=HG003_chrY_G0000088;Parent=HG003_chrY_T0000235;transcript_name=hg002_chrY_paternal_162.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000235:0;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	8999575	8999577	.	+	0	source_transcript=hg002_chrY_paternal_162.1;source_transcript_name=hg002_chrY_paternal_162.2;source_gene=hg002_chrY_paternal_162;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_162;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_162.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_162.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_162.1,hg002_chrY_paternal_162.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000235;gene_id=HG003_chrY_G0000088;Parent=HG003_chrY_T0000235;transcript_name=hg002_chrY_paternal_162.2;gene_name=TSPY9;ID=start_codon:HG003_chrY_T0000235;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9000079	9000685	.	+	.	source_transcript=hg002_chrY_paternal_162.1;source_transcript_name=hg002_chrY_paternal_162.2;source_gene=hg002_chrY_paternal_162;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_162;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_162.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_162.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_162.1,hg002_chrY_paternal_162.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000235;gene_id=HG003_chrY_G0000088;Parent=HG003_chrY_T0000235;transcript_name=hg002_chrY_paternal_162.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000235:0;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9000686	9000763	.	+	.	source_transcript=hg002_chrY_paternal_162.1;source_transcript_name=hg002_chrY_paternal_162.2;source_gene=hg002_chrY_paternal_162;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_162;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_162.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_162.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_162.1,hg002_chrY_paternal_162.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000235;gene_id=HG003_chrY_G0000088;Parent=HG003_chrY_T0000235;transcript_name=hg002_chrY_paternal_162.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000235:1;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9000686	9000763	.	+	0	source_transcript=hg002_chrY_paternal_162.1;source_transcript_name=hg002_chrY_paternal_162.2;source_gene=hg002_chrY_paternal_162;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_162;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_162.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_162.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_162.1,hg002_chrY_paternal_162.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000235;gene_id=HG003_chrY_G0000088;Parent=HG003_chrY_T0000235;transcript_name=hg002_chrY_paternal_162.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000235:1;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9000764	9000891	.	+	.	source_transcript=hg002_chrY_paternal_162.1;source_transcript_name=hg002_chrY_paternal_162.2;source_gene=hg002_chrY_paternal_162;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_162;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_162.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_162.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_162.1,hg002_chrY_paternal_162.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000235;gene_id=HG003_chrY_G0000088;Parent=HG003_chrY_T0000235;transcript_name=hg002_chrY_paternal_162.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000235:1;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9000892	9001003	.	+	.	source_transcript=hg002_chrY_paternal_162.1;source_transcript_name=hg002_chrY_paternal_162.2;source_gene=hg002_chrY_paternal_162;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_162;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_162.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_162.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_162.1,hg002_chrY_paternal_162.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000235;gene_id=HG003_chrY_G0000088;Parent=HG003_chrY_T0000235;transcript_name=hg002_chrY_paternal_162.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000235:2;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9000892	9001003	.	+	0	source_transcript=hg002_chrY_paternal_162.1;source_transcript_name=hg002_chrY_paternal_162.2;source_gene=hg002_chrY_paternal_162;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_162;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_162.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_162.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_162.1,hg002_chrY_paternal_162.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000235;gene_id=HG003_chrY_G0000088;Parent=HG003_chrY_T0000235;transcript_name=hg002_chrY_paternal_162.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000235:2;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9001004	9001104	.	+	.	source_transcript=hg002_chrY_paternal_162.1;source_transcript_name=hg002_chrY_paternal_162.2;source_gene=hg002_chrY_paternal_162;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_162;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_162.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_162.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_162.1,hg002_chrY_paternal_162.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000235;gene_id=HG003_chrY_G0000088;Parent=HG003_chrY_T0000235;transcript_name=hg002_chrY_paternal_162.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000235:2;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9001105	9001250	.	+	.	source_transcript=hg002_chrY_paternal_162.1;source_transcript_name=hg002_chrY_paternal_162.2;source_gene=hg002_chrY_paternal_162;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_162;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_162.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_162.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_162.1,hg002_chrY_paternal_162.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000235;gene_id=HG003_chrY_G0000088;Parent=HG003_chrY_T0000235;transcript_name=hg002_chrY_paternal_162.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000235:3;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9001105	9001250	.	+	2	source_transcript=hg002_chrY_paternal_162.1;source_transcript_name=hg002_chrY_paternal_162.2;source_gene=hg002_chrY_paternal_162;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_162;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_162.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_162.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_162.1,hg002_chrY_paternal_162.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000235;gene_id=HG003_chrY_G0000088;Parent=HG003_chrY_T0000235;transcript_name=hg002_chrY_paternal_162.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000235:3;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9001251	9001356	.	+	.	source_transcript=hg002_chrY_paternal_162.1;source_transcript_name=hg002_chrY_paternal_162.2;source_gene=hg002_chrY_paternal_162;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_162;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_162.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_162.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_162.1,hg002_chrY_paternal_162.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000235;gene_id=HG003_chrY_G0000088;Parent=HG003_chrY_T0000235;transcript_name=hg002_chrY_paternal_162.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000235:3;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9001357	9001438	.	+	.	source_transcript=hg002_chrY_paternal_162.1;source_transcript_name=hg002_chrY_paternal_162.2;source_gene=hg002_chrY_paternal_162;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_162;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_162.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_162.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_162.1,hg002_chrY_paternal_162.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000235;gene_id=HG003_chrY_G0000088;Parent=HG003_chrY_T0000235;transcript_name=hg002_chrY_paternal_162.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000235:4;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9001357	9001438	.	+	0	source_transcript=hg002_chrY_paternal_162.1;source_transcript_name=hg002_chrY_paternal_162.2;source_gene=hg002_chrY_paternal_162;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_162;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_162.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_162.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_162.1,hg002_chrY_paternal_162.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000235;gene_id=HG003_chrY_G0000088;Parent=HG003_chrY_T0000235;transcript_name=hg002_chrY_paternal_162.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000235:4;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9001439	9002132	.	+	.	source_transcript=hg002_chrY_paternal_162.1;source_transcript_name=hg002_chrY_paternal_162.2;source_gene=hg002_chrY_paternal_162;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_162;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_162.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_162.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_162.1,hg002_chrY_paternal_162.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000235;gene_id=HG003_chrY_G0000088;Parent=HG003_chrY_T0000235;transcript_name=hg002_chrY_paternal_162.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000235:4;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9002133	9002343	.	+	.	source_transcript=hg002_chrY_paternal_162.1;source_transcript_name=hg002_chrY_paternal_162.2;source_gene=hg002_chrY_paternal_162;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_162;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_162.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_162.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_162.1,hg002_chrY_paternal_162.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000235;gene_id=HG003_chrY_G0000088;Parent=HG003_chrY_T0000235;transcript_name=hg002_chrY_paternal_162.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000235:5;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9002133	9002155	.	+	2	source_transcript=hg002_chrY_paternal_162.1;source_transcript_name=hg002_chrY_paternal_162.2;source_gene=hg002_chrY_paternal_162;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_162;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_162.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_162.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_162.1,hg002_chrY_paternal_162.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000235;gene_id=HG003_chrY_G0000088;Parent=HG003_chrY_T0000235;transcript_name=hg002_chrY_paternal_162.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000235:5;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9002153	9002155	.	+	0	source_transcript=hg002_chrY_paternal_162.1;source_transcript_name=hg002_chrY_paternal_162.2;source_gene=hg002_chrY_paternal_162;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_162;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_162.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_162.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_162.1,hg002_chrY_paternal_162.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000235;gene_id=HG003_chrY_G0000088;Parent=HG003_chrY_T0000235;transcript_name=hg002_chrY_paternal_162.2;gene_name=TSPY9;ID=stop_codon:HG003_chrY_T0000235;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8999529	9002343	100	+	.	source_transcript=hg002_chrY_paternal_162.2;source_transcript_name=hg002_chrY_paternal_162.2;source_gene=hg002_chrY_paternal_162;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_162;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_162.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_162.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_162.2,hg002_chrY_paternal_162.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000236;gene_id=HG003_chrY_G0000088;Parent=HG003_chrY_G0000088;transcript_name=hg002_chrY_paternal_162.2;gene_name=TSPY9;ID=HG003_chrY_T0000236;Name=TSPY9
HG003_chrY	CAT	exon	8999529	9000078	.	+	.	source_transcript=hg002_chrY_paternal_162.2;source_transcript_name=hg002_chrY_paternal_162.2;source_gene=hg002_chrY_paternal_162;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_162;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_162.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_162.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_162.2,hg002_chrY_paternal_162.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000236;gene_id=HG003_chrY_G0000088;Parent=HG003_chrY_T0000236;transcript_name=hg002_chrY_paternal_162.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000236:0;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8999575	9000078	.	+	0	source_transcript=hg002_chrY_paternal_162.2;source_transcript_name=hg002_chrY_paternal_162.2;source_gene=hg002_chrY_paternal_162;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_162;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_162.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_162.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_162.2,hg002_chrY_paternal_162.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000236;gene_id=HG003_chrY_G0000088;Parent=HG003_chrY_T0000236;transcript_name=hg002_chrY_paternal_162.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000236:0;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	8999575	8999577	.	+	0	source_transcript=hg002_chrY_paternal_162.2;source_transcript_name=hg002_chrY_paternal_162.2;source_gene=hg002_chrY_paternal_162;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_162;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_162.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_162.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_162.2,hg002_chrY_paternal_162.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000236;gene_id=HG003_chrY_G0000088;Parent=HG003_chrY_T0000236;transcript_name=hg002_chrY_paternal_162.2;gene_name=TSPY9;ID=start_codon:HG003_chrY_T0000236;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9000079	9000685	.	+	.	source_transcript=hg002_chrY_paternal_162.2;source_transcript_name=hg002_chrY_paternal_162.2;source_gene=hg002_chrY_paternal_162;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_162;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_162.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_162.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_162.2,hg002_chrY_paternal_162.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000236;gene_id=HG003_chrY_G0000088;Parent=HG003_chrY_T0000236;transcript_name=hg002_chrY_paternal_162.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000236:0;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9000686	9000763	.	+	.	source_transcript=hg002_chrY_paternal_162.2;source_transcript_name=hg002_chrY_paternal_162.2;source_gene=hg002_chrY_paternal_162;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_162;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_162.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_162.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_162.2,hg002_chrY_paternal_162.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000236;gene_id=HG003_chrY_G0000088;Parent=HG003_chrY_T0000236;transcript_name=hg002_chrY_paternal_162.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000236:1;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9000686	9000763	.	+	0	source_transcript=hg002_chrY_paternal_162.2;source_transcript_name=hg002_chrY_paternal_162.2;source_gene=hg002_chrY_paternal_162;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_162;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_162.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_162.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_162.2,hg002_chrY_paternal_162.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000236;gene_id=HG003_chrY_G0000088;Parent=HG003_chrY_T0000236;transcript_name=hg002_chrY_paternal_162.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000236:1;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9000764	9000891	.	+	.	source_transcript=hg002_chrY_paternal_162.2;source_transcript_name=hg002_chrY_paternal_162.2;source_gene=hg002_chrY_paternal_162;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_162;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_162.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_162.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_162.2,hg002_chrY_paternal_162.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000236;gene_id=HG003_chrY_G0000088;Parent=HG003_chrY_T0000236;transcript_name=hg002_chrY_paternal_162.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000236:1;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9000892	9001003	.	+	.	source_transcript=hg002_chrY_paternal_162.2;source_transcript_name=hg002_chrY_paternal_162.2;source_gene=hg002_chrY_paternal_162;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_162;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_162.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_162.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_162.2,hg002_chrY_paternal_162.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000236;gene_id=HG003_chrY_G0000088;Parent=HG003_chrY_T0000236;transcript_name=hg002_chrY_paternal_162.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000236:2;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9000892	9001003	.	+	0	source_transcript=hg002_chrY_paternal_162.2;source_transcript_name=hg002_chrY_paternal_162.2;source_gene=hg002_chrY_paternal_162;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_162;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_162.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_162.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_162.2,hg002_chrY_paternal_162.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000236;gene_id=HG003_chrY_G0000088;Parent=HG003_chrY_T0000236;transcript_name=hg002_chrY_paternal_162.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000236:2;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9001004	9001104	.	+	.	source_transcript=hg002_chrY_paternal_162.2;source_transcript_name=hg002_chrY_paternal_162.2;source_gene=hg002_chrY_paternal_162;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_162;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_162.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_162.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_162.2,hg002_chrY_paternal_162.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000236;gene_id=HG003_chrY_G0000088;Parent=HG003_chrY_T0000236;transcript_name=hg002_chrY_paternal_162.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000236:2;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9001105	9001250	.	+	.	source_transcript=hg002_chrY_paternal_162.2;source_transcript_name=hg002_chrY_paternal_162.2;source_gene=hg002_chrY_paternal_162;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_162;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_162.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_162.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_162.2,hg002_chrY_paternal_162.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000236;gene_id=HG003_chrY_G0000088;Parent=HG003_chrY_T0000236;transcript_name=hg002_chrY_paternal_162.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000236:3;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9001105	9001250	.	+	2	source_transcript=hg002_chrY_paternal_162.2;source_transcript_name=hg002_chrY_paternal_162.2;source_gene=hg002_chrY_paternal_162;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_162;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_162.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_162.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_162.2,hg002_chrY_paternal_162.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000236;gene_id=HG003_chrY_G0000088;Parent=HG003_chrY_T0000236;transcript_name=hg002_chrY_paternal_162.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000236:3;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9001251	9001345	.	+	.	source_transcript=hg002_chrY_paternal_162.2;source_transcript_name=hg002_chrY_paternal_162.2;source_gene=hg002_chrY_paternal_162;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_162;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_162.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_162.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_162.2,hg002_chrY_paternal_162.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000236;gene_id=HG003_chrY_G0000088;Parent=HG003_chrY_T0000236;transcript_name=hg002_chrY_paternal_162.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000236:3;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9001346	9001438	.	+	.	source_transcript=hg002_chrY_paternal_162.2;source_transcript_name=hg002_chrY_paternal_162.2;source_gene=hg002_chrY_paternal_162;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_162;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_162.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_162.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_162.2,hg002_chrY_paternal_162.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000236;gene_id=HG003_chrY_G0000088;Parent=HG003_chrY_T0000236;transcript_name=hg002_chrY_paternal_162.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000236:4;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9001346	9001408	.	+	0	source_transcript=hg002_chrY_paternal_162.2;source_transcript_name=hg002_chrY_paternal_162.2;source_gene=hg002_chrY_paternal_162;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_162;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_162.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_162.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_162.2,hg002_chrY_paternal_162.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000236;gene_id=HG003_chrY_G0000088;Parent=HG003_chrY_T0000236;transcript_name=hg002_chrY_paternal_162.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000236:4;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9001406	9001408	.	+	0	source_transcript=hg002_chrY_paternal_162.2;source_transcript_name=hg002_chrY_paternal_162.2;source_gene=hg002_chrY_paternal_162;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_162;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_162.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_162.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_162.2,hg002_chrY_paternal_162.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000236;gene_id=HG003_chrY_G0000088;Parent=HG003_chrY_T0000236;transcript_name=hg002_chrY_paternal_162.2;gene_name=TSPY9;ID=stop_codon:HG003_chrY_T0000236;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9001439	9002132	.	+	.	source_transcript=hg002_chrY_paternal_162.2;source_transcript_name=hg002_chrY_paternal_162.2;source_gene=hg002_chrY_paternal_162;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_162;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_162.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_162.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_162.2,hg002_chrY_paternal_162.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000236;gene_id=HG003_chrY_G0000088;Parent=HG003_chrY_T0000236;transcript_name=hg002_chrY_paternal_162.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000236:4;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9002133	9002343	.	+	.	source_transcript=hg002_chrY_paternal_162.2;source_transcript_name=hg002_chrY_paternal_162.2;source_gene=hg002_chrY_paternal_162;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_162;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_162.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_162.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_162.2,hg002_chrY_paternal_162.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000236;gene_id=HG003_chrY_G0000088;Parent=HG003_chrY_T0000236;transcript_name=hg002_chrY_paternal_162.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000236:5;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9011608	9017296	.	-	.	source_gene_common_name=FAM197Y2;source_gene=hg002_chrY_paternal_163;alternative_source_transcripts=hg002_chrY_paternal_163.1,hg002_chrY_paternal_163.1;gene_id=HG003_chrY_G0000089;gene_biotype=lncRNA;gene_name=FAM197Y2;gene_sources=liftoff;ID=HG003_chrY_G0000089;Name=FAM197Y2
HG003_chrY	CAT	transcript	9011608	9017296	1000	-	.	source_transcript=hg002_chrY_paternal_163.1;source_transcript_name=hg002_chrY_paternal_163.1;source_gene=hg002_chrY_paternal_163;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_163;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_163.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_163.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_163.1,hg002_chrY_paternal_163.1;transcript_id=HG003_chrY_T0000237;gene_id=HG003_chrY_G0000089;Parent=HG003_chrY_G0000089;transcript_name=hg002_chrY_paternal_163.1;gene_name=FAM197Y2;ID=HG003_chrY_T0000237;Name=FAM197Y2
HG003_chrY	CAT	exon	9011608	9011667	.	-	.	source_transcript=hg002_chrY_paternal_163.1;source_transcript_name=hg002_chrY_paternal_163.1;source_gene=hg002_chrY_paternal_163;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_163;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_163.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_163.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_163.1,hg002_chrY_paternal_163.1;transcript_id=HG003_chrY_T0000237;gene_id=HG003_chrY_G0000089;Parent=HG003_chrY_T0000237;transcript_name=hg002_chrY_paternal_163.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000237:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9011668	9015216	.	-	.	source_transcript=hg002_chrY_paternal_163.1;source_transcript_name=hg002_chrY_paternal_163.1;source_gene=hg002_chrY_paternal_163;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_163;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_163.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_163.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_163.1,hg002_chrY_paternal_163.1;transcript_id=HG003_chrY_T0000237;gene_id=HG003_chrY_G0000089;Parent=HG003_chrY_T0000237;transcript_name=hg002_chrY_paternal_163.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000237:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9015217	9015375	.	-	.	source_transcript=hg002_chrY_paternal_163.1;source_transcript_name=hg002_chrY_paternal_163.1;source_gene=hg002_chrY_paternal_163;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_163;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_163.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_163.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_163.1,hg002_chrY_paternal_163.1;transcript_id=HG003_chrY_T0000237;gene_id=HG003_chrY_G0000089;Parent=HG003_chrY_T0000237;transcript_name=hg002_chrY_paternal_163.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000237:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9015376	9016873	.	-	.	source_transcript=hg002_chrY_paternal_163.1;source_transcript_name=hg002_chrY_paternal_163.1;source_gene=hg002_chrY_paternal_163;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_163;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_163.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_163.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_163.1,hg002_chrY_paternal_163.1;transcript_id=HG003_chrY_T0000237;gene_id=HG003_chrY_G0000089;Parent=HG003_chrY_T0000237;transcript_name=hg002_chrY_paternal_163.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000237:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9016874	9017019	.	-	.	source_transcript=hg002_chrY_paternal_163.1;source_transcript_name=hg002_chrY_paternal_163.1;source_gene=hg002_chrY_paternal_163;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_163;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_163.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_163.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_163.1,hg002_chrY_paternal_163.1;transcript_id=HG003_chrY_T0000237;gene_id=HG003_chrY_G0000089;Parent=HG003_chrY_T0000237;transcript_name=hg002_chrY_paternal_163.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000237:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9017020	9017105	.	-	.	source_transcript=hg002_chrY_paternal_163.1;source_transcript_name=hg002_chrY_paternal_163.1;source_gene=hg002_chrY_paternal_163;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_163;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_163.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_163.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_163.1,hg002_chrY_paternal_163.1;transcript_id=HG003_chrY_T0000237;gene_id=HG003_chrY_G0000089;Parent=HG003_chrY_T0000237;transcript_name=hg002_chrY_paternal_163.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000237:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9017106	9017296	.	-	.	source_transcript=hg002_chrY_paternal_163.1;source_transcript_name=hg002_chrY_paternal_163.1;source_gene=hg002_chrY_paternal_163;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_163;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_163.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_163.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_163.1,hg002_chrY_paternal_163.1;transcript_id=HG003_chrY_T0000237;gene_id=HG003_chrY_G0000089;Parent=HG003_chrY_T0000237;transcript_name=hg002_chrY_paternal_163.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000237:3;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9019820	9022616	.	+	.	source_gene_common_name=TSPY3;source_gene=hg002_chrY_paternal_164;alternative_source_transcripts=hg002_chrY_paternal_164.1,hg002_chrY_paternal_164.1;gene_id=HG003_chrY_G0000090;gene_biotype=protein_coding;gene_name=TSPY3;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000090;Name=TSPY3
HG003_chrY	CAT	transcript	9019820	9022616	100	+	.	source_transcript=hg002_chrY_paternal_164.1;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.1,hg002_chrY_paternal_164.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000238;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_G0000090;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=HG003_chrY_T0000238;Name=TSPY3
HG003_chrY	CAT	exon	9019820	9020351	.	+	.	source_transcript=hg002_chrY_paternal_164.1;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.1,hg002_chrY_paternal_164.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000238;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000238;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000238:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9019866	9020351	.	+	0	source_transcript=hg002_chrY_paternal_164.1;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.1,hg002_chrY_paternal_164.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000238;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000238;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000238:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9019866	9019868	.	+	0	source_transcript=hg002_chrY_paternal_164.1;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.1,hg002_chrY_paternal_164.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000238;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000238;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000238;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9020352	9020958	.	+	.	source_transcript=hg002_chrY_paternal_164.1;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.1,hg002_chrY_paternal_164.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000238;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000238;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000238:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9020959	9021036	.	+	.	source_transcript=hg002_chrY_paternal_164.1;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.1,hg002_chrY_paternal_164.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000238;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000238;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000238:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9020959	9021036	.	+	0	source_transcript=hg002_chrY_paternal_164.1;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.1,hg002_chrY_paternal_164.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000238;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000238;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000238:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9021037	9021164	.	+	.	source_transcript=hg002_chrY_paternal_164.1;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.1,hg002_chrY_paternal_164.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000238;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000238;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000238:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9021165	9021276	.	+	.	source_transcript=hg002_chrY_paternal_164.1;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.1,hg002_chrY_paternal_164.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000238;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000238;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000238:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9021165	9021276	.	+	0	source_transcript=hg002_chrY_paternal_164.1;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.1,hg002_chrY_paternal_164.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000238;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000238;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000238:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9021277	9021377	.	+	.	source_transcript=hg002_chrY_paternal_164.1;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.1,hg002_chrY_paternal_164.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000238;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000238;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000238:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9021378	9021523	.	+	.	source_transcript=hg002_chrY_paternal_164.1;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.1,hg002_chrY_paternal_164.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000238;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000238;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000238:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9021378	9021523	.	+	2	source_transcript=hg002_chrY_paternal_164.1;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.1,hg002_chrY_paternal_164.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000238;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000238;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000238:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9021524	9021629	.	+	.	source_transcript=hg002_chrY_paternal_164.1;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.1,hg002_chrY_paternal_164.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000238;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000238;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000238:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9021630	9021711	.	+	.	source_transcript=hg002_chrY_paternal_164.1;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.1,hg002_chrY_paternal_164.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000238;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000238;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000238:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9021630	9021711	.	+	0	source_transcript=hg002_chrY_paternal_164.1;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.1,hg002_chrY_paternal_164.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000238;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000238;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000238:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9021712	9022405	.	+	.	source_transcript=hg002_chrY_paternal_164.1;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.1,hg002_chrY_paternal_164.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000238;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000238;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000238:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9022406	9022616	.	+	.	source_transcript=hg002_chrY_paternal_164.1;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.1,hg002_chrY_paternal_164.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000238;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000238;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000238:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9022406	9022428	.	+	2	source_transcript=hg002_chrY_paternal_164.1;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.1,hg002_chrY_paternal_164.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000238;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000238;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000238:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9022426	9022428	.	+	0	source_transcript=hg002_chrY_paternal_164.1;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.1,hg002_chrY_paternal_164.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000238;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000238;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000238;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9019820	9022616	100	+	.	source_transcript=hg002_chrY_paternal_164.2;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.2,hg002_chrY_paternal_164.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000239;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_G0000090;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=HG003_chrY_T0000239;Name=TSPY3
HG003_chrY	CAT	exon	9019820	9020351	.	+	.	source_transcript=hg002_chrY_paternal_164.2;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.2,hg002_chrY_paternal_164.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000239;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000239;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000239:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9019866	9020351	.	+	0	source_transcript=hg002_chrY_paternal_164.2;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.2,hg002_chrY_paternal_164.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000239;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000239;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000239:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9019866	9019868	.	+	0	source_transcript=hg002_chrY_paternal_164.2;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.2,hg002_chrY_paternal_164.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000239;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000239;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000239;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9020352	9020958	.	+	.	source_transcript=hg002_chrY_paternal_164.2;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.2,hg002_chrY_paternal_164.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000239;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000239;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000239:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9020959	9021036	.	+	.	source_transcript=hg002_chrY_paternal_164.2;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.2,hg002_chrY_paternal_164.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000239;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000239;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000239:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9020959	9021036	.	+	0	source_transcript=hg002_chrY_paternal_164.2;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.2,hg002_chrY_paternal_164.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000239;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000239;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000239:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9021037	9021164	.	+	.	source_transcript=hg002_chrY_paternal_164.2;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.2,hg002_chrY_paternal_164.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000239;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000239;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000239:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9021165	9021276	.	+	.	source_transcript=hg002_chrY_paternal_164.2;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.2,hg002_chrY_paternal_164.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000239;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000239;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000239:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9021165	9021276	.	+	0	source_transcript=hg002_chrY_paternal_164.2;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.2,hg002_chrY_paternal_164.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000239;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000239;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000239:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9021277	9021377	.	+	.	source_transcript=hg002_chrY_paternal_164.2;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.2,hg002_chrY_paternal_164.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000239;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000239;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000239:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9021378	9021523	.	+	.	source_transcript=hg002_chrY_paternal_164.2;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.2,hg002_chrY_paternal_164.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000239;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000239;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000239:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9021378	9021523	.	+	2	source_transcript=hg002_chrY_paternal_164.2;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.2,hg002_chrY_paternal_164.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000239;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000239;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000239:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9021524	9021618	.	+	.	source_transcript=hg002_chrY_paternal_164.2;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.2,hg002_chrY_paternal_164.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000239;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000239;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000239:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9021619	9021711	.	+	.	source_transcript=hg002_chrY_paternal_164.2;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.2,hg002_chrY_paternal_164.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000239;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000239;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000239:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9021619	9021681	.	+	0	source_transcript=hg002_chrY_paternal_164.2;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.2,hg002_chrY_paternal_164.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000239;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000239;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000239:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9021679	9021681	.	+	0	source_transcript=hg002_chrY_paternal_164.2;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.2,hg002_chrY_paternal_164.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000239;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000239;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000239;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9021712	9022405	.	+	.	source_transcript=hg002_chrY_paternal_164.2;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.2,hg002_chrY_paternal_164.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000239;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000239;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000239:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9022406	9022616	.	+	.	source_transcript=hg002_chrY_paternal_164.2;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.2,hg002_chrY_paternal_164.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000239;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000239;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000239:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9019820	9022616	100	+	.	source_transcript=hg002_chrY_paternal_164.3;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.3,hg002_chrY_paternal_164.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000240;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_G0000090;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=HG003_chrY_T0000240;Name=TSPY3
HG003_chrY	CAT	exon	9019820	9020351	.	+	.	source_transcript=hg002_chrY_paternal_164.3;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.3,hg002_chrY_paternal_164.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000240;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000240;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000240:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9019866	9020351	.	+	0	source_transcript=hg002_chrY_paternal_164.3;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.3,hg002_chrY_paternal_164.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000240;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000240;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000240:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9019866	9019868	.	+	0	source_transcript=hg002_chrY_paternal_164.3;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.3,hg002_chrY_paternal_164.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000240;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000240;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000240;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9020352	9020958	.	+	.	source_transcript=hg002_chrY_paternal_164.3;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.3,hg002_chrY_paternal_164.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000240;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000240;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000240:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9020959	9021036	.	+	.	source_transcript=hg002_chrY_paternal_164.3;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.3,hg002_chrY_paternal_164.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000240;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000240;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000240:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9020959	9021036	.	+	0	source_transcript=hg002_chrY_paternal_164.3;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.3,hg002_chrY_paternal_164.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000240;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000240;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000240:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9021037	9021164	.	+	.	source_transcript=hg002_chrY_paternal_164.3;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.3,hg002_chrY_paternal_164.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000240;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000240;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000240:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9021165	9021276	.	+	.	source_transcript=hg002_chrY_paternal_164.3;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.3,hg002_chrY_paternal_164.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000240;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000240;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000240:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9021165	9021276	.	+	0	source_transcript=hg002_chrY_paternal_164.3;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.3,hg002_chrY_paternal_164.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000240;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000240;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000240:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9021277	9021384	.	+	.	source_transcript=hg002_chrY_paternal_164.3;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.3,hg002_chrY_paternal_164.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000240;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000240;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000240:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9021385	9021523	.	+	.	source_transcript=hg002_chrY_paternal_164.3;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.3,hg002_chrY_paternal_164.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000240;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000240;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000240:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9021385	9021523	.	+	2	source_transcript=hg002_chrY_paternal_164.3;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.3,hg002_chrY_paternal_164.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000240;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000240;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000240:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9021524	9021629	.	+	.	source_transcript=hg002_chrY_paternal_164.3;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.3,hg002_chrY_paternal_164.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000240;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000240;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000240:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9021630	9021711	.	+	.	source_transcript=hg002_chrY_paternal_164.3;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.3,hg002_chrY_paternal_164.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000240;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000240;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000240:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9021630	9021681	.	+	1	source_transcript=hg002_chrY_paternal_164.3;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.3,hg002_chrY_paternal_164.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000240;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000240;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000240:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9021679	9021681	.	+	0	source_transcript=hg002_chrY_paternal_164.3;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.3,hg002_chrY_paternal_164.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000240;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000240;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000240;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9021712	9022405	.	+	.	source_transcript=hg002_chrY_paternal_164.3;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.3,hg002_chrY_paternal_164.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000240;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000240;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000240:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9022406	9022616	.	+	.	source_transcript=hg002_chrY_paternal_164.3;source_transcript_name=hg002_chrY_paternal_164.4;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_164.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.3,hg002_chrY_paternal_164.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000240;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000240;transcript_name=hg002_chrY_paternal_164.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000240:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9019820	9022616	1000	+	.	source_transcript=hg002_chrY_paternal_164.4;source_transcript_name=hg002_chrY_paternal_164.1;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_164.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.4,hg002_chrY_paternal_164.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000241;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_G0000090;transcript_name=hg002_chrY_paternal_164.1;gene_name=TSPY3;ID=HG003_chrY_T0000241;Name=TSPY3
HG003_chrY	CAT	exon	9019820	9020351	.	+	.	source_transcript=hg002_chrY_paternal_164.4;source_transcript_name=hg002_chrY_paternal_164.1;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_164.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.4,hg002_chrY_paternal_164.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000241;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000241;transcript_name=hg002_chrY_paternal_164.1;gene_name=TSPY3;ID=exon:HG003_chrY_T0000241:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9020352	9020958	.	+	.	source_transcript=hg002_chrY_paternal_164.4;source_transcript_name=hg002_chrY_paternal_164.1;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_164.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.4,hg002_chrY_paternal_164.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000241;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000241;transcript_name=hg002_chrY_paternal_164.1;gene_name=TSPY3;ID=intron:HG003_chrY_T0000241:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9020959	9021036	.	+	.	source_transcript=hg002_chrY_paternal_164.4;source_transcript_name=hg002_chrY_paternal_164.1;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_164.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.4,hg002_chrY_paternal_164.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000241;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000241;transcript_name=hg002_chrY_paternal_164.1;gene_name=TSPY3;ID=exon:HG003_chrY_T0000241:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9021037	9021164	.	+	.	source_transcript=hg002_chrY_paternal_164.4;source_transcript_name=hg002_chrY_paternal_164.1;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_164.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.4,hg002_chrY_paternal_164.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000241;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000241;transcript_name=hg002_chrY_paternal_164.1;gene_name=TSPY3;ID=intron:HG003_chrY_T0000241:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9021165	9021276	.	+	.	source_transcript=hg002_chrY_paternal_164.4;source_transcript_name=hg002_chrY_paternal_164.1;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_164.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.4,hg002_chrY_paternal_164.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000241;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000241;transcript_name=hg002_chrY_paternal_164.1;gene_name=TSPY3;ID=exon:HG003_chrY_T0000241:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9021277	9021384	.	+	.	source_transcript=hg002_chrY_paternal_164.4;source_transcript_name=hg002_chrY_paternal_164.1;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_164.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.4,hg002_chrY_paternal_164.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000241;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000241;transcript_name=hg002_chrY_paternal_164.1;gene_name=TSPY3;ID=intron:HG003_chrY_T0000241:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9021385	9021523	.	+	.	source_transcript=hg002_chrY_paternal_164.4;source_transcript_name=hg002_chrY_paternal_164.1;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_164.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.4,hg002_chrY_paternal_164.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000241;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000241;transcript_name=hg002_chrY_paternal_164.1;gene_name=TSPY3;ID=exon:HG003_chrY_T0000241:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9021524	9021618	.	+	.	source_transcript=hg002_chrY_paternal_164.4;source_transcript_name=hg002_chrY_paternal_164.1;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_164.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.4,hg002_chrY_paternal_164.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000241;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000241;transcript_name=hg002_chrY_paternal_164.1;gene_name=TSPY3;ID=intron:HG003_chrY_T0000241:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9021619	9021711	.	+	.	source_transcript=hg002_chrY_paternal_164.4;source_transcript_name=hg002_chrY_paternal_164.1;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_164.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.4,hg002_chrY_paternal_164.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000241;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000241;transcript_name=hg002_chrY_paternal_164.1;gene_name=TSPY3;ID=exon:HG003_chrY_T0000241:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9021712	9022405	.	+	.	source_transcript=hg002_chrY_paternal_164.4;source_transcript_name=hg002_chrY_paternal_164.1;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_164.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.4,hg002_chrY_paternal_164.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000241;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000241;transcript_name=hg002_chrY_paternal_164.1;gene_name=TSPY3;ID=intron:HG003_chrY_T0000241:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9022406	9022616	.	+	.	source_transcript=hg002_chrY_paternal_164.4;source_transcript_name=hg002_chrY_paternal_164.1;source_gene=hg002_chrY_paternal_164;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_164;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_164.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_164.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_164.4,hg002_chrY_paternal_164.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000241;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000241;transcript_name=hg002_chrY_paternal_164.1;gene_name=TSPY3;ID=exon:HG003_chrY_T0000241:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9031870	9037558	.	-	.	source_gene_common_name=FAM197Y2;source_gene=hg002_chrY_paternal_165;alternative_source_transcripts=hg002_chrY_paternal_165.1,hg002_chrY_paternal_165.1;gene_id=HG003_chrY_G0000091;gene_biotype=lncRNA;gene_name=FAM197Y2;gene_sources=liftoff;ID=HG003_chrY_G0000091;Name=FAM197Y2
HG003_chrY	CAT	transcript	9031870	9037558	1000	-	.	source_transcript=hg002_chrY_paternal_165.1;source_transcript_name=hg002_chrY_paternal_165.1;source_gene=hg002_chrY_paternal_165;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_165;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_165.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_165.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_165.1,hg002_chrY_paternal_165.1;transcript_id=HG003_chrY_T0000242;gene_id=HG003_chrY_G0000091;Parent=HG003_chrY_G0000091;transcript_name=hg002_chrY_paternal_165.1;gene_name=FAM197Y2;ID=HG003_chrY_T0000242;Name=FAM197Y2
HG003_chrY	CAT	exon	9031870	9031929	.	-	.	source_transcript=hg002_chrY_paternal_165.1;source_transcript_name=hg002_chrY_paternal_165.1;source_gene=hg002_chrY_paternal_165;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_165;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_165.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_165.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_165.1,hg002_chrY_paternal_165.1;transcript_id=HG003_chrY_T0000242;gene_id=HG003_chrY_G0000091;Parent=HG003_chrY_T0000242;transcript_name=hg002_chrY_paternal_165.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000242:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9031930	9035478	.	-	.	source_transcript=hg002_chrY_paternal_165.1;source_transcript_name=hg002_chrY_paternal_165.1;source_gene=hg002_chrY_paternal_165;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_165;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_165.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_165.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_165.1,hg002_chrY_paternal_165.1;transcript_id=HG003_chrY_T0000242;gene_id=HG003_chrY_G0000091;Parent=HG003_chrY_T0000242;transcript_name=hg002_chrY_paternal_165.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000242:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9035479	9035637	.	-	.	source_transcript=hg002_chrY_paternal_165.1;source_transcript_name=hg002_chrY_paternal_165.1;source_gene=hg002_chrY_paternal_165;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_165;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_165.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_165.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_165.1,hg002_chrY_paternal_165.1;transcript_id=HG003_chrY_T0000242;gene_id=HG003_chrY_G0000091;Parent=HG003_chrY_T0000242;transcript_name=hg002_chrY_paternal_165.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000242:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9035638	9037135	.	-	.	source_transcript=hg002_chrY_paternal_165.1;source_transcript_name=hg002_chrY_paternal_165.1;source_gene=hg002_chrY_paternal_165;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_165;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_165.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_165.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_165.1,hg002_chrY_paternal_165.1;transcript_id=HG003_chrY_T0000242;gene_id=HG003_chrY_G0000091;Parent=HG003_chrY_T0000242;transcript_name=hg002_chrY_paternal_165.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000242:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9037136	9037281	.	-	.	source_transcript=hg002_chrY_paternal_165.1;source_transcript_name=hg002_chrY_paternal_165.1;source_gene=hg002_chrY_paternal_165;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_165;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_165.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_165.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_165.1,hg002_chrY_paternal_165.1;transcript_id=HG003_chrY_T0000242;gene_id=HG003_chrY_G0000091;Parent=HG003_chrY_T0000242;transcript_name=hg002_chrY_paternal_165.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000242:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9037282	9037367	.	-	.	source_transcript=hg002_chrY_paternal_165.1;source_transcript_name=hg002_chrY_paternal_165.1;source_gene=hg002_chrY_paternal_165;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_165;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_165.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_165.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_165.1,hg002_chrY_paternal_165.1;transcript_id=HG003_chrY_T0000242;gene_id=HG003_chrY_G0000091;Parent=HG003_chrY_T0000242;transcript_name=hg002_chrY_paternal_165.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000242:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9037368	9037558	.	-	.	source_transcript=hg002_chrY_paternal_165.1;source_transcript_name=hg002_chrY_paternal_165.1;source_gene=hg002_chrY_paternal_165;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_165;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_165.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_165.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_165.1,hg002_chrY_paternal_165.1;transcript_id=HG003_chrY_T0000242;gene_id=HG003_chrY_G0000091;Parent=HG003_chrY_T0000242;transcript_name=hg002_chrY_paternal_165.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000242:3;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9040082	9042878	.	+	.	source_gene_common_name=TSPY10;source_gene=hg002_chrY_paternal_166;alternative_source_transcripts=hg002_chrY_paternal_166.1,hg002_chrY_paternal_166.1;gene_id=HG003_chrY_G0000092;gene_biotype=protein_coding;gene_name=TSPY10;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000092;Name=TSPY10
HG003_chrY	CAT	transcript	9040082	9042878	100	+	.	source_transcript=hg002_chrY_paternal_166.1;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.1,hg002_chrY_paternal_166.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000243;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_G0000092;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=HG003_chrY_T0000243;Name=TSPY10
HG003_chrY	CAT	exon	9040082	9040613	.	+	.	source_transcript=hg002_chrY_paternal_166.1;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.1,hg002_chrY_paternal_166.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000243;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000243;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000243:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9040128	9040613	.	+	0	source_transcript=hg002_chrY_paternal_166.1;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.1,hg002_chrY_paternal_166.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000243;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000243;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000243:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9040128	9040130	.	+	0	source_transcript=hg002_chrY_paternal_166.1;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.1,hg002_chrY_paternal_166.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000243;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000243;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000243;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9040614	9041220	.	+	.	source_transcript=hg002_chrY_paternal_166.1;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.1,hg002_chrY_paternal_166.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000243;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000243;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000243:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9041221	9041298	.	+	.	source_transcript=hg002_chrY_paternal_166.1;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.1,hg002_chrY_paternal_166.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000243;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000243;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000243:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9041221	9041298	.	+	0	source_transcript=hg002_chrY_paternal_166.1;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.1,hg002_chrY_paternal_166.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000243;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000243;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000243:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9041299	9041426	.	+	.	source_transcript=hg002_chrY_paternal_166.1;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.1,hg002_chrY_paternal_166.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000243;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000243;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000243:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9041427	9041538	.	+	.	source_transcript=hg002_chrY_paternal_166.1;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.1,hg002_chrY_paternal_166.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000243;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000243;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000243:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9041427	9041538	.	+	0	source_transcript=hg002_chrY_paternal_166.1;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.1,hg002_chrY_paternal_166.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000243;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000243;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000243:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9041539	9041639	.	+	.	source_transcript=hg002_chrY_paternal_166.1;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.1,hg002_chrY_paternal_166.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000243;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000243;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000243:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9041640	9041785	.	+	.	source_transcript=hg002_chrY_paternal_166.1;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.1,hg002_chrY_paternal_166.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000243;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000243;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000243:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9041640	9041785	.	+	2	source_transcript=hg002_chrY_paternal_166.1;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.1,hg002_chrY_paternal_166.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000243;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000243;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000243:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9041786	9041891	.	+	.	source_transcript=hg002_chrY_paternal_166.1;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.1,hg002_chrY_paternal_166.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000243;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000243;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000243:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9041892	9041973	.	+	.	source_transcript=hg002_chrY_paternal_166.1;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.1,hg002_chrY_paternal_166.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000243;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000243;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000243:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9041892	9041973	.	+	0	source_transcript=hg002_chrY_paternal_166.1;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.1,hg002_chrY_paternal_166.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000243;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000243;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000243:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9041974	9042667	.	+	.	source_transcript=hg002_chrY_paternal_166.1;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.1,hg002_chrY_paternal_166.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000243;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000243;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000243:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9042668	9042878	.	+	.	source_transcript=hg002_chrY_paternal_166.1;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.1,hg002_chrY_paternal_166.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000243;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000243;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000243:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9042668	9042690	.	+	2	source_transcript=hg002_chrY_paternal_166.1;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.1,hg002_chrY_paternal_166.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000243;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000243;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000243:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9042688	9042690	.	+	0	source_transcript=hg002_chrY_paternal_166.1;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.1,hg002_chrY_paternal_166.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000243;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000243;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000243;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9040082	9042878	100	+	.	source_transcript=hg002_chrY_paternal_166.2;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.2,hg002_chrY_paternal_166.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000244;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_G0000092;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=HG003_chrY_T0000244;Name=TSPY10
HG003_chrY	CAT	exon	9040082	9040613	.	+	.	source_transcript=hg002_chrY_paternal_166.2;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.2,hg002_chrY_paternal_166.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000244;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000244;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000244:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9040128	9040613	.	+	0	source_transcript=hg002_chrY_paternal_166.2;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.2,hg002_chrY_paternal_166.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000244;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000244;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000244:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9040128	9040130	.	+	0	source_transcript=hg002_chrY_paternal_166.2;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.2,hg002_chrY_paternal_166.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000244;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000244;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000244;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9040614	9041220	.	+	.	source_transcript=hg002_chrY_paternal_166.2;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.2,hg002_chrY_paternal_166.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000244;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000244;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000244:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9041221	9041298	.	+	.	source_transcript=hg002_chrY_paternal_166.2;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.2,hg002_chrY_paternal_166.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000244;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000244;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000244:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9041221	9041298	.	+	0	source_transcript=hg002_chrY_paternal_166.2;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.2,hg002_chrY_paternal_166.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000244;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000244;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000244:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9041299	9041426	.	+	.	source_transcript=hg002_chrY_paternal_166.2;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.2,hg002_chrY_paternal_166.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000244;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000244;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000244:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9041427	9041538	.	+	.	source_transcript=hg002_chrY_paternal_166.2;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.2,hg002_chrY_paternal_166.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000244;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000244;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000244:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9041427	9041538	.	+	0	source_transcript=hg002_chrY_paternal_166.2;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.2,hg002_chrY_paternal_166.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000244;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000244;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000244:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9041539	9041639	.	+	.	source_transcript=hg002_chrY_paternal_166.2;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.2,hg002_chrY_paternal_166.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000244;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000244;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000244:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9041640	9041785	.	+	.	source_transcript=hg002_chrY_paternal_166.2;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.2,hg002_chrY_paternal_166.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000244;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000244;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000244:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9041640	9041785	.	+	2	source_transcript=hg002_chrY_paternal_166.2;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.2,hg002_chrY_paternal_166.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000244;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000244;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000244:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9041786	9041880	.	+	.	source_transcript=hg002_chrY_paternal_166.2;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.2,hg002_chrY_paternal_166.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000244;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000244;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000244:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9041881	9041973	.	+	.	source_transcript=hg002_chrY_paternal_166.2;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.2,hg002_chrY_paternal_166.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000244;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000244;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000244:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9041881	9041943	.	+	0	source_transcript=hg002_chrY_paternal_166.2;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.2,hg002_chrY_paternal_166.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000244;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000244;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000244:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9041941	9041943	.	+	0	source_transcript=hg002_chrY_paternal_166.2;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.2,hg002_chrY_paternal_166.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000244;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000244;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000244;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9041974	9042667	.	+	.	source_transcript=hg002_chrY_paternal_166.2;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.2,hg002_chrY_paternal_166.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000244;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000244;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000244:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9042668	9042878	.	+	.	source_transcript=hg002_chrY_paternal_166.2;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.2,hg002_chrY_paternal_166.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000244;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000244;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000244:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9040082	9042878	100	+	.	source_transcript=hg002_chrY_paternal_166.3;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.3,hg002_chrY_paternal_166.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000245;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_G0000092;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=HG003_chrY_T0000245;Name=TSPY10
HG003_chrY	CAT	exon	9040082	9040613	.	+	.	source_transcript=hg002_chrY_paternal_166.3;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.3,hg002_chrY_paternal_166.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000245;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000245;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000245:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9040128	9040613	.	+	0	source_transcript=hg002_chrY_paternal_166.3;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.3,hg002_chrY_paternal_166.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000245;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000245;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000245:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9040128	9040130	.	+	0	source_transcript=hg002_chrY_paternal_166.3;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.3,hg002_chrY_paternal_166.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000245;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000245;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000245;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9040614	9041220	.	+	.	source_transcript=hg002_chrY_paternal_166.3;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.3,hg002_chrY_paternal_166.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000245;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000245;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000245:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9041221	9041298	.	+	.	source_transcript=hg002_chrY_paternal_166.3;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.3,hg002_chrY_paternal_166.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000245;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000245;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000245:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9041221	9041298	.	+	0	source_transcript=hg002_chrY_paternal_166.3;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.3,hg002_chrY_paternal_166.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000245;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000245;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000245:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9041299	9041426	.	+	.	source_transcript=hg002_chrY_paternal_166.3;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.3,hg002_chrY_paternal_166.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000245;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000245;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000245:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9041427	9041538	.	+	.	source_transcript=hg002_chrY_paternal_166.3;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.3,hg002_chrY_paternal_166.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000245;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000245;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000245:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9041427	9041538	.	+	0	source_transcript=hg002_chrY_paternal_166.3;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.3,hg002_chrY_paternal_166.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000245;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000245;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000245:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9041539	9041646	.	+	.	source_transcript=hg002_chrY_paternal_166.3;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.3,hg002_chrY_paternal_166.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000245;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000245;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000245:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9041647	9041785	.	+	.	source_transcript=hg002_chrY_paternal_166.3;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.3,hg002_chrY_paternal_166.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000245;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000245;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000245:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9041647	9041785	.	+	2	source_transcript=hg002_chrY_paternal_166.3;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.3,hg002_chrY_paternal_166.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000245;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000245;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000245:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9041786	9041891	.	+	.	source_transcript=hg002_chrY_paternal_166.3;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.3,hg002_chrY_paternal_166.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000245;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000245;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000245:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9041892	9041973	.	+	.	source_transcript=hg002_chrY_paternal_166.3;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.3,hg002_chrY_paternal_166.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000245;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000245;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000245:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9041892	9041943	.	+	1	source_transcript=hg002_chrY_paternal_166.3;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.3,hg002_chrY_paternal_166.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000245;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000245;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000245:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9041941	9041943	.	+	0	source_transcript=hg002_chrY_paternal_166.3;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.3,hg002_chrY_paternal_166.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000245;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000245;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000245;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9041974	9042667	.	+	.	source_transcript=hg002_chrY_paternal_166.3;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.3,hg002_chrY_paternal_166.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000245;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000245;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000245:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9042668	9042878	.	+	.	source_transcript=hg002_chrY_paternal_166.3;source_transcript_name=hg002_chrY_paternal_166.4;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_166.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.3,hg002_chrY_paternal_166.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000245;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000245;transcript_name=hg002_chrY_paternal_166.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000245:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9040082	9042878	1000	+	.	source_transcript=hg002_chrY_paternal_166.4;source_transcript_name=hg002_chrY_paternal_166.1;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_166.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.4,hg002_chrY_paternal_166.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000246;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_G0000092;transcript_name=hg002_chrY_paternal_166.1;gene_name=TSPY10;ID=HG003_chrY_T0000246;Name=TSPY10
HG003_chrY	CAT	exon	9040082	9040613	.	+	.	source_transcript=hg002_chrY_paternal_166.4;source_transcript_name=hg002_chrY_paternal_166.1;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_166.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.4,hg002_chrY_paternal_166.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000246;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000246;transcript_name=hg002_chrY_paternal_166.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000246:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9040614	9041220	.	+	.	source_transcript=hg002_chrY_paternal_166.4;source_transcript_name=hg002_chrY_paternal_166.1;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_166.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.4,hg002_chrY_paternal_166.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000246;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000246;transcript_name=hg002_chrY_paternal_166.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000246:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9041221	9041298	.	+	.	source_transcript=hg002_chrY_paternal_166.4;source_transcript_name=hg002_chrY_paternal_166.1;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_166.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.4,hg002_chrY_paternal_166.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000246;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000246;transcript_name=hg002_chrY_paternal_166.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000246:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9041299	9041426	.	+	.	source_transcript=hg002_chrY_paternal_166.4;source_transcript_name=hg002_chrY_paternal_166.1;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_166.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.4,hg002_chrY_paternal_166.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000246;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000246;transcript_name=hg002_chrY_paternal_166.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000246:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9041427	9041538	.	+	.	source_transcript=hg002_chrY_paternal_166.4;source_transcript_name=hg002_chrY_paternal_166.1;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_166.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.4,hg002_chrY_paternal_166.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000246;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000246;transcript_name=hg002_chrY_paternal_166.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000246:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9041539	9041646	.	+	.	source_transcript=hg002_chrY_paternal_166.4;source_transcript_name=hg002_chrY_paternal_166.1;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_166.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.4,hg002_chrY_paternal_166.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000246;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000246;transcript_name=hg002_chrY_paternal_166.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000246:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9041647	9041785	.	+	.	source_transcript=hg002_chrY_paternal_166.4;source_transcript_name=hg002_chrY_paternal_166.1;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_166.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.4,hg002_chrY_paternal_166.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000246;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000246;transcript_name=hg002_chrY_paternal_166.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000246:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9041786	9041880	.	+	.	source_transcript=hg002_chrY_paternal_166.4;source_transcript_name=hg002_chrY_paternal_166.1;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_166.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.4,hg002_chrY_paternal_166.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000246;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000246;transcript_name=hg002_chrY_paternal_166.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000246:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9041881	9041973	.	+	.	source_transcript=hg002_chrY_paternal_166.4;source_transcript_name=hg002_chrY_paternal_166.1;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_166.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.4,hg002_chrY_paternal_166.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000246;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000246;transcript_name=hg002_chrY_paternal_166.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000246:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9041974	9042667	.	+	.	source_transcript=hg002_chrY_paternal_166.4;source_transcript_name=hg002_chrY_paternal_166.1;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_166.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.4,hg002_chrY_paternal_166.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000246;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000246;transcript_name=hg002_chrY_paternal_166.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000246:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9042668	9042878	.	+	.	source_transcript=hg002_chrY_paternal_166.4;source_transcript_name=hg002_chrY_paternal_166.1;source_gene=hg002_chrY_paternal_166;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_166;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_166.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_166.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.4,hg002_chrY_paternal_166.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000246;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000246;transcript_name=hg002_chrY_paternal_166.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000246:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9052148	9057749	.	-	.	source_gene_common_name=FAM197Y3;source_gene=hg002_chrY_paternal_167;alternative_source_transcripts=hg002_chrY_paternal_167.1,hg002_chrY_paternal_167.1;gene_id=HG003_chrY_G0000093;gene_biotype=lncRNA;gene_name=FAM197Y3;gene_sources=liftoff;ID=HG003_chrY_G0000093;Name=FAM197Y3
HG003_chrY	CAT	transcript	9052148	9057749	1000	-	.	source_transcript=hg002_chrY_paternal_167.1;source_transcript_name=hg002_chrY_paternal_167.1;source_gene=hg002_chrY_paternal_167;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_167;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_167.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_167.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_167.1,hg002_chrY_paternal_167.1;transcript_id=HG003_chrY_T0000247;gene_id=HG003_chrY_G0000093;Parent=HG003_chrY_G0000093;transcript_name=hg002_chrY_paternal_167.1;gene_name=FAM197Y3;ID=HG003_chrY_T0000247;Name=FAM197Y3
HG003_chrY	CAT	exon	9052148	9052207	.	-	.	source_transcript=hg002_chrY_paternal_167.1;source_transcript_name=hg002_chrY_paternal_167.1;source_gene=hg002_chrY_paternal_167;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_167;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_167.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_167.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_167.1,hg002_chrY_paternal_167.1;transcript_id=HG003_chrY_T0000247;gene_id=HG003_chrY_G0000093;Parent=HG003_chrY_T0000247;transcript_name=hg002_chrY_paternal_167.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000247:0;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9052208	9055758	.	-	.	source_transcript=hg002_chrY_paternal_167.1;source_transcript_name=hg002_chrY_paternal_167.1;source_gene=hg002_chrY_paternal_167;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_167;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_167.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_167.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_167.1,hg002_chrY_paternal_167.1;transcript_id=HG003_chrY_T0000247;gene_id=HG003_chrY_G0000093;Parent=HG003_chrY_T0000247;transcript_name=hg002_chrY_paternal_167.1;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000247:0;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9055759	9055917	.	-	.	source_transcript=hg002_chrY_paternal_167.1;source_transcript_name=hg002_chrY_paternal_167.1;source_gene=hg002_chrY_paternal_167;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_167;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_167.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_167.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_167.1,hg002_chrY_paternal_167.1;transcript_id=HG003_chrY_T0000247;gene_id=HG003_chrY_G0000093;Parent=HG003_chrY_T0000247;transcript_name=hg002_chrY_paternal_167.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000247:1;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9055918	9057415	.	-	.	source_transcript=hg002_chrY_paternal_167.1;source_transcript_name=hg002_chrY_paternal_167.1;source_gene=hg002_chrY_paternal_167;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_167;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_167.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_167.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_167.1,hg002_chrY_paternal_167.1;transcript_id=HG003_chrY_T0000247;gene_id=HG003_chrY_G0000093;Parent=HG003_chrY_T0000247;transcript_name=hg002_chrY_paternal_167.1;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000247:1;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9057416	9057561	.	-	.	source_transcript=hg002_chrY_paternal_167.1;source_transcript_name=hg002_chrY_paternal_167.1;source_gene=hg002_chrY_paternal_167;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_167;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_167.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_167.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_167.1,hg002_chrY_paternal_167.1;transcript_id=HG003_chrY_T0000247;gene_id=HG003_chrY_G0000093;Parent=HG003_chrY_T0000247;transcript_name=hg002_chrY_paternal_167.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000247:2;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9057562	9057647	.	-	.	source_transcript=hg002_chrY_paternal_167.1;source_transcript_name=hg002_chrY_paternal_167.1;source_gene=hg002_chrY_paternal_167;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_167;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_167.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_167.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_167.1,hg002_chrY_paternal_167.1;transcript_id=HG003_chrY_T0000247;gene_id=HG003_chrY_G0000093;Parent=HG003_chrY_T0000247;transcript_name=hg002_chrY_paternal_167.1;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000247:2;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9057648	9057749	.	-	.	source_transcript=hg002_chrY_paternal_167.1;source_transcript_name=hg002_chrY_paternal_167.1;source_gene=hg002_chrY_paternal_167;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_167;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_167.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_167.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_167.1,hg002_chrY_paternal_167.1;transcript_id=HG003_chrY_T0000247;gene_id=HG003_chrY_G0000093;Parent=HG003_chrY_T0000247;transcript_name=hg002_chrY_paternal_167.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000247:3;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9060362	9063158	.	+	.	source_gene_common_name=TSPY10;source_gene=hg002_chrY_paternal_168;alternative_source_transcripts=hg002_chrY_paternal_168.1,hg002_chrY_paternal_168.1;gene_id=HG003_chrY_G0000094;gene_biotype=protein_coding;gene_name=TSPY10;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000094;Name=TSPY10
HG003_chrY	CAT	transcript	9060362	9063158	100	+	.	source_transcript=hg002_chrY_paternal_168.1;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.1,hg002_chrY_paternal_168.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000248;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_G0000094;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=HG003_chrY_T0000248;Name=TSPY10
HG003_chrY	CAT	exon	9060362	9060893	.	+	.	source_transcript=hg002_chrY_paternal_168.1;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.1,hg002_chrY_paternal_168.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000248;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000248;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000248:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9060408	9060893	.	+	0	source_transcript=hg002_chrY_paternal_168.1;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.1,hg002_chrY_paternal_168.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000248;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000248;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000248:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9060408	9060410	.	+	0	source_transcript=hg002_chrY_paternal_168.1;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.1,hg002_chrY_paternal_168.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000248;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000248;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000248;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9060894	9061500	.	+	.	source_transcript=hg002_chrY_paternal_168.1;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.1,hg002_chrY_paternal_168.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000248;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000248;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000248:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9061501	9061578	.	+	.	source_transcript=hg002_chrY_paternal_168.1;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.1,hg002_chrY_paternal_168.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000248;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000248;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000248:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9061501	9061578	.	+	0	source_transcript=hg002_chrY_paternal_168.1;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.1,hg002_chrY_paternal_168.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000248;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000248;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000248:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9061579	9061706	.	+	.	source_transcript=hg002_chrY_paternal_168.1;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.1,hg002_chrY_paternal_168.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000248;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000248;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000248:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9061707	9061818	.	+	.	source_transcript=hg002_chrY_paternal_168.1;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.1,hg002_chrY_paternal_168.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000248;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000248;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000248:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9061707	9061818	.	+	0	source_transcript=hg002_chrY_paternal_168.1;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.1,hg002_chrY_paternal_168.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000248;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000248;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000248:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9061819	9061919	.	+	.	source_transcript=hg002_chrY_paternal_168.1;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.1,hg002_chrY_paternal_168.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000248;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000248;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000248:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9061920	9062065	.	+	.	source_transcript=hg002_chrY_paternal_168.1;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.1,hg002_chrY_paternal_168.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000248;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000248;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000248:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9061920	9062065	.	+	2	source_transcript=hg002_chrY_paternal_168.1;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.1,hg002_chrY_paternal_168.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000248;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000248;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000248:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9062066	9062171	.	+	.	source_transcript=hg002_chrY_paternal_168.1;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.1,hg002_chrY_paternal_168.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000248;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000248;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000248:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9062172	9062253	.	+	.	source_transcript=hg002_chrY_paternal_168.1;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.1,hg002_chrY_paternal_168.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000248;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000248;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000248:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9062172	9062253	.	+	0	source_transcript=hg002_chrY_paternal_168.1;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.1,hg002_chrY_paternal_168.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000248;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000248;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000248:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9062254	9062947	.	+	.	source_transcript=hg002_chrY_paternal_168.1;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.1,hg002_chrY_paternal_168.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000248;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000248;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000248:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9062948	9063158	.	+	.	source_transcript=hg002_chrY_paternal_168.1;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.1,hg002_chrY_paternal_168.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000248;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000248;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000248:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9062948	9062970	.	+	2	source_transcript=hg002_chrY_paternal_168.1;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.1,hg002_chrY_paternal_168.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000248;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000248;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000248:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9062968	9062970	.	+	0	source_transcript=hg002_chrY_paternal_168.1;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.1,hg002_chrY_paternal_168.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000248;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000248;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000248;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9060362	9063158	100	+	.	source_transcript=hg002_chrY_paternal_168.2;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.2,hg002_chrY_paternal_168.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000249;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_G0000094;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=HG003_chrY_T0000249;Name=TSPY10
HG003_chrY	CAT	exon	9060362	9060893	.	+	.	source_transcript=hg002_chrY_paternal_168.2;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.2,hg002_chrY_paternal_168.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000249;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000249;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000249:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9060408	9060893	.	+	0	source_transcript=hg002_chrY_paternal_168.2;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.2,hg002_chrY_paternal_168.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000249;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000249;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000249:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9060408	9060410	.	+	0	source_transcript=hg002_chrY_paternal_168.2;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.2,hg002_chrY_paternal_168.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000249;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000249;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000249;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9060894	9061500	.	+	.	source_transcript=hg002_chrY_paternal_168.2;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.2,hg002_chrY_paternal_168.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000249;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000249;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000249:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9061501	9061578	.	+	.	source_transcript=hg002_chrY_paternal_168.2;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.2,hg002_chrY_paternal_168.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000249;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000249;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000249:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9061501	9061578	.	+	0	source_transcript=hg002_chrY_paternal_168.2;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.2,hg002_chrY_paternal_168.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000249;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000249;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000249:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9061579	9061706	.	+	.	source_transcript=hg002_chrY_paternal_168.2;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.2,hg002_chrY_paternal_168.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000249;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000249;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000249:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9061707	9061818	.	+	.	source_transcript=hg002_chrY_paternal_168.2;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.2,hg002_chrY_paternal_168.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000249;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000249;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000249:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9061707	9061818	.	+	0	source_transcript=hg002_chrY_paternal_168.2;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.2,hg002_chrY_paternal_168.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000249;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000249;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000249:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9061819	9061919	.	+	.	source_transcript=hg002_chrY_paternal_168.2;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.2,hg002_chrY_paternal_168.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000249;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000249;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000249:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9061920	9062065	.	+	.	source_transcript=hg002_chrY_paternal_168.2;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.2,hg002_chrY_paternal_168.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000249;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000249;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000249:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9061920	9062065	.	+	2	source_transcript=hg002_chrY_paternal_168.2;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.2,hg002_chrY_paternal_168.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000249;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000249;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000249:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9062066	9062160	.	+	.	source_transcript=hg002_chrY_paternal_168.2;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.2,hg002_chrY_paternal_168.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000249;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000249;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000249:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9062161	9062253	.	+	.	source_transcript=hg002_chrY_paternal_168.2;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.2,hg002_chrY_paternal_168.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000249;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000249;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000249:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9062161	9062223	.	+	0	source_transcript=hg002_chrY_paternal_168.2;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.2,hg002_chrY_paternal_168.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000249;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000249;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000249:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9062221	9062223	.	+	0	source_transcript=hg002_chrY_paternal_168.2;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.2,hg002_chrY_paternal_168.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000249;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000249;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000249;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9062254	9062947	.	+	.	source_transcript=hg002_chrY_paternal_168.2;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.2,hg002_chrY_paternal_168.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000249;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000249;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000249:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9062948	9063158	.	+	.	source_transcript=hg002_chrY_paternal_168.2;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.2,hg002_chrY_paternal_168.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000249;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000249;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000249:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9060362	9063158	100	+	.	source_transcript=hg002_chrY_paternal_168.3;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.3,hg002_chrY_paternal_168.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000250;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_G0000094;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=HG003_chrY_T0000250;Name=TSPY10
HG003_chrY	CAT	exon	9060362	9060893	.	+	.	source_transcript=hg002_chrY_paternal_168.3;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.3,hg002_chrY_paternal_168.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000250;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000250;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000250:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9060408	9060893	.	+	0	source_transcript=hg002_chrY_paternal_168.3;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.3,hg002_chrY_paternal_168.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000250;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000250;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000250:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9060408	9060410	.	+	0	source_transcript=hg002_chrY_paternal_168.3;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.3,hg002_chrY_paternal_168.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000250;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000250;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000250;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9060894	9061500	.	+	.	source_transcript=hg002_chrY_paternal_168.3;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.3,hg002_chrY_paternal_168.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000250;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000250;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000250:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9061501	9061578	.	+	.	source_transcript=hg002_chrY_paternal_168.3;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.3,hg002_chrY_paternal_168.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000250;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000250;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000250:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9061501	9061578	.	+	0	source_transcript=hg002_chrY_paternal_168.3;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.3,hg002_chrY_paternal_168.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000250;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000250;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000250:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9061579	9061706	.	+	.	source_transcript=hg002_chrY_paternal_168.3;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.3,hg002_chrY_paternal_168.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000250;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000250;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000250:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9061707	9061818	.	+	.	source_transcript=hg002_chrY_paternal_168.3;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.3,hg002_chrY_paternal_168.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000250;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000250;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000250:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9061707	9061818	.	+	0	source_transcript=hg002_chrY_paternal_168.3;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.3,hg002_chrY_paternal_168.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000250;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000250;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000250:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9061819	9061926	.	+	.	source_transcript=hg002_chrY_paternal_168.3;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.3,hg002_chrY_paternal_168.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000250;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000250;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000250:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9061927	9062065	.	+	.	source_transcript=hg002_chrY_paternal_168.3;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.3,hg002_chrY_paternal_168.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000250;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000250;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000250:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9061927	9062065	.	+	2	source_transcript=hg002_chrY_paternal_168.3;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.3,hg002_chrY_paternal_168.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000250;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000250;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000250:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9062066	9062171	.	+	.	source_transcript=hg002_chrY_paternal_168.3;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.3,hg002_chrY_paternal_168.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000250;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000250;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000250:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9062172	9062253	.	+	.	source_transcript=hg002_chrY_paternal_168.3;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.3,hg002_chrY_paternal_168.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000250;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000250;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000250:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9062172	9062223	.	+	1	source_transcript=hg002_chrY_paternal_168.3;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.3,hg002_chrY_paternal_168.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000250;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000250;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000250:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9062221	9062223	.	+	0	source_transcript=hg002_chrY_paternal_168.3;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.3,hg002_chrY_paternal_168.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000250;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000250;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000250;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9062254	9062947	.	+	.	source_transcript=hg002_chrY_paternal_168.3;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.3,hg002_chrY_paternal_168.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000250;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000250;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000250:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9062948	9063158	.	+	.	source_transcript=hg002_chrY_paternal_168.3;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.3,hg002_chrY_paternal_168.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000250;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000250;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000250:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9060362	9063158	1000	+	.	source_transcript=hg002_chrY_paternal_168.4;source_transcript_name=hg002_chrY_paternal_168.1;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_168.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.4,hg002_chrY_paternal_168.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000251;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_G0000094;transcript_name=hg002_chrY_paternal_168.1;gene_name=TSPY10;ID=HG003_chrY_T0000251;Name=TSPY10
HG003_chrY	CAT	exon	9060362	9060893	.	+	.	source_transcript=hg002_chrY_paternal_168.4;source_transcript_name=hg002_chrY_paternal_168.1;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_168.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.4,hg002_chrY_paternal_168.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000251;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000251;transcript_name=hg002_chrY_paternal_168.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000251:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9060894	9061500	.	+	.	source_transcript=hg002_chrY_paternal_168.4;source_transcript_name=hg002_chrY_paternal_168.1;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_168.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.4,hg002_chrY_paternal_168.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000251;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000251;transcript_name=hg002_chrY_paternal_168.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000251:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9061501	9061578	.	+	.	source_transcript=hg002_chrY_paternal_168.4;source_transcript_name=hg002_chrY_paternal_168.1;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_168.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.4,hg002_chrY_paternal_168.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000251;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000251;transcript_name=hg002_chrY_paternal_168.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000251:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9061579	9061706	.	+	.	source_transcript=hg002_chrY_paternal_168.4;source_transcript_name=hg002_chrY_paternal_168.1;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_168.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.4,hg002_chrY_paternal_168.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000251;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000251;transcript_name=hg002_chrY_paternal_168.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000251:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9061707	9061818	.	+	.	source_transcript=hg002_chrY_paternal_168.4;source_transcript_name=hg002_chrY_paternal_168.1;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_168.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.4,hg002_chrY_paternal_168.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000251;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000251;transcript_name=hg002_chrY_paternal_168.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000251:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9061819	9061926	.	+	.	source_transcript=hg002_chrY_paternal_168.4;source_transcript_name=hg002_chrY_paternal_168.1;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_168.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.4,hg002_chrY_paternal_168.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000251;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000251;transcript_name=hg002_chrY_paternal_168.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000251:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9061927	9062065	.	+	.	source_transcript=hg002_chrY_paternal_168.4;source_transcript_name=hg002_chrY_paternal_168.1;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_168.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.4,hg002_chrY_paternal_168.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000251;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000251;transcript_name=hg002_chrY_paternal_168.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000251:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9062066	9062160	.	+	.	source_transcript=hg002_chrY_paternal_168.4;source_transcript_name=hg002_chrY_paternal_168.1;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_168.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.4,hg002_chrY_paternal_168.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000251;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000251;transcript_name=hg002_chrY_paternal_168.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000251:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9062161	9062253	.	+	.	source_transcript=hg002_chrY_paternal_168.4;source_transcript_name=hg002_chrY_paternal_168.1;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_168.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.4,hg002_chrY_paternal_168.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000251;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000251;transcript_name=hg002_chrY_paternal_168.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000251:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9062254	9062947	.	+	.	source_transcript=hg002_chrY_paternal_168.4;source_transcript_name=hg002_chrY_paternal_168.1;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_168.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.4,hg002_chrY_paternal_168.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000251;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000251;transcript_name=hg002_chrY_paternal_168.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000251:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9062948	9063158	.	+	.	source_transcript=hg002_chrY_paternal_168.4;source_transcript_name=hg002_chrY_paternal_168.1;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_168.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.4,hg002_chrY_paternal_168.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000251;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000251;transcript_name=hg002_chrY_paternal_168.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000251:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9072430	9078030	.	-	.	source_gene_common_name=FAM197Y3;source_gene=hg002_chrY_paternal_169;alternative_source_transcripts=hg002_chrY_paternal_169.1,hg002_chrY_paternal_169.1;gene_id=HG003_chrY_G0000095;gene_biotype=lncRNA;gene_name=FAM197Y3;gene_sources=liftoff;ID=HG003_chrY_G0000095;Name=FAM197Y3
HG003_chrY	CAT	transcript	9072430	9078030	1000	-	.	source_transcript=hg002_chrY_paternal_169.1;source_transcript_name=hg002_chrY_paternal_169.1;source_gene=hg002_chrY_paternal_169;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_169;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_169.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_169.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_169.1,hg002_chrY_paternal_169.1;transcript_id=HG003_chrY_T0000252;gene_id=HG003_chrY_G0000095;Parent=HG003_chrY_G0000095;transcript_name=hg002_chrY_paternal_169.1;gene_name=FAM197Y3;ID=HG003_chrY_T0000252;Name=FAM197Y3
HG003_chrY	CAT	exon	9072430	9072489	.	-	.	source_transcript=hg002_chrY_paternal_169.1;source_transcript_name=hg002_chrY_paternal_169.1;source_gene=hg002_chrY_paternal_169;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_169;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_169.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_169.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_169.1,hg002_chrY_paternal_169.1;transcript_id=HG003_chrY_T0000252;gene_id=HG003_chrY_G0000095;Parent=HG003_chrY_T0000252;transcript_name=hg002_chrY_paternal_169.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000252:0;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9072490	9076037	.	-	.	source_transcript=hg002_chrY_paternal_169.1;source_transcript_name=hg002_chrY_paternal_169.1;source_gene=hg002_chrY_paternal_169;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_169;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_169.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_169.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_169.1,hg002_chrY_paternal_169.1;transcript_id=HG003_chrY_T0000252;gene_id=HG003_chrY_G0000095;Parent=HG003_chrY_T0000252;transcript_name=hg002_chrY_paternal_169.1;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000252:0;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9076038	9076196	.	-	.	source_transcript=hg002_chrY_paternal_169.1;source_transcript_name=hg002_chrY_paternal_169.1;source_gene=hg002_chrY_paternal_169;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_169;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_169.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_169.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_169.1,hg002_chrY_paternal_169.1;transcript_id=HG003_chrY_T0000252;gene_id=HG003_chrY_G0000095;Parent=HG003_chrY_T0000252;transcript_name=hg002_chrY_paternal_169.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000252:1;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9076197	9077696	.	-	.	source_transcript=hg002_chrY_paternal_169.1;source_transcript_name=hg002_chrY_paternal_169.1;source_gene=hg002_chrY_paternal_169;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_169;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_169.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_169.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_169.1,hg002_chrY_paternal_169.1;transcript_id=HG003_chrY_T0000252;gene_id=HG003_chrY_G0000095;Parent=HG003_chrY_T0000252;transcript_name=hg002_chrY_paternal_169.1;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000252:1;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9077697	9077842	.	-	.	source_transcript=hg002_chrY_paternal_169.1;source_transcript_name=hg002_chrY_paternal_169.1;source_gene=hg002_chrY_paternal_169;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_169;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_169.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_169.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_169.1,hg002_chrY_paternal_169.1;transcript_id=HG003_chrY_T0000252;gene_id=HG003_chrY_G0000095;Parent=HG003_chrY_T0000252;transcript_name=hg002_chrY_paternal_169.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000252:2;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9077843	9077928	.	-	.	source_transcript=hg002_chrY_paternal_169.1;source_transcript_name=hg002_chrY_paternal_169.1;source_gene=hg002_chrY_paternal_169;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_169;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_169.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_169.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_169.1,hg002_chrY_paternal_169.1;transcript_id=HG003_chrY_T0000252;gene_id=HG003_chrY_G0000095;Parent=HG003_chrY_T0000252;transcript_name=hg002_chrY_paternal_169.1;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000252:2;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9077929	9078030	.	-	.	source_transcript=hg002_chrY_paternal_169.1;source_transcript_name=hg002_chrY_paternal_169.1;source_gene=hg002_chrY_paternal_169;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_169;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_169.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_169.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_169.1,hg002_chrY_paternal_169.1;transcript_id=HG003_chrY_T0000252;gene_id=HG003_chrY_G0000095;Parent=HG003_chrY_T0000252;transcript_name=hg002_chrY_paternal_169.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000252:3;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9080639	9083435	.	+	.	source_gene_common_name=TSPY10;source_gene=hg002_chrY_paternal_170;alternative_source_transcripts=hg002_chrY_paternal_170.1,hg002_chrY_paternal_170.1;gene_id=HG003_chrY_G0000096;gene_biotype=protein_coding;gene_name=TSPY10;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000096;Name=TSPY10
HG003_chrY	CAT	transcript	9080639	9083435	100	+	.	source_transcript=hg002_chrY_paternal_170.1;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.1,hg002_chrY_paternal_170.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000253;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_G0000096;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=HG003_chrY_T0000253;Name=TSPY10
HG003_chrY	CAT	exon	9080639	9081170	.	+	.	source_transcript=hg002_chrY_paternal_170.1;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.1,hg002_chrY_paternal_170.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000253;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000253;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000253:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9080685	9081170	.	+	0	source_transcript=hg002_chrY_paternal_170.1;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.1,hg002_chrY_paternal_170.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000253;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000253;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000253:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9080685	9080687	.	+	0	source_transcript=hg002_chrY_paternal_170.1;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.1,hg002_chrY_paternal_170.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000253;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000253;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000253;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9081171	9081777	.	+	.	source_transcript=hg002_chrY_paternal_170.1;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.1,hg002_chrY_paternal_170.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000253;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000253;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000253:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9081778	9081855	.	+	.	source_transcript=hg002_chrY_paternal_170.1;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.1,hg002_chrY_paternal_170.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000253;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000253;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000253:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9081778	9081855	.	+	0	source_transcript=hg002_chrY_paternal_170.1;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.1,hg002_chrY_paternal_170.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000253;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000253;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000253:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9081856	9081983	.	+	.	source_transcript=hg002_chrY_paternal_170.1;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.1,hg002_chrY_paternal_170.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000253;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000253;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000253:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9081984	9082095	.	+	.	source_transcript=hg002_chrY_paternal_170.1;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.1,hg002_chrY_paternal_170.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000253;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000253;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000253:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9081984	9082095	.	+	0	source_transcript=hg002_chrY_paternal_170.1;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.1,hg002_chrY_paternal_170.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000253;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000253;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000253:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9082096	9082196	.	+	.	source_transcript=hg002_chrY_paternal_170.1;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.1,hg002_chrY_paternal_170.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000253;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000253;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000253:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9082197	9082342	.	+	.	source_transcript=hg002_chrY_paternal_170.1;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.1,hg002_chrY_paternal_170.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000253;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000253;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000253:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9082197	9082342	.	+	2	source_transcript=hg002_chrY_paternal_170.1;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.1,hg002_chrY_paternal_170.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000253;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000253;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000253:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9082343	9082448	.	+	.	source_transcript=hg002_chrY_paternal_170.1;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.1,hg002_chrY_paternal_170.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000253;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000253;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000253:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9082449	9082530	.	+	.	source_transcript=hg002_chrY_paternal_170.1;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.1,hg002_chrY_paternal_170.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000253;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000253;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000253:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9082449	9082530	.	+	0	source_transcript=hg002_chrY_paternal_170.1;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.1,hg002_chrY_paternal_170.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000253;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000253;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000253:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9082531	9083224	.	+	.	source_transcript=hg002_chrY_paternal_170.1;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.1,hg002_chrY_paternal_170.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000253;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000253;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000253:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9083225	9083435	.	+	.	source_transcript=hg002_chrY_paternal_170.1;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.1,hg002_chrY_paternal_170.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000253;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000253;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000253:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9083225	9083247	.	+	2	source_transcript=hg002_chrY_paternal_170.1;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.1,hg002_chrY_paternal_170.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000253;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000253;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000253:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9083245	9083247	.	+	0	source_transcript=hg002_chrY_paternal_170.1;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.1,hg002_chrY_paternal_170.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000253;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000253;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000253;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9080639	9083435	100	+	.	source_transcript=hg002_chrY_paternal_170.2;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.2,hg002_chrY_paternal_170.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000254;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_G0000096;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=HG003_chrY_T0000254;Name=TSPY10
HG003_chrY	CAT	exon	9080639	9081170	.	+	.	source_transcript=hg002_chrY_paternal_170.2;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.2,hg002_chrY_paternal_170.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000254;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000254;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000254:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9080685	9081170	.	+	0	source_transcript=hg002_chrY_paternal_170.2;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.2,hg002_chrY_paternal_170.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000254;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000254;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000254:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9080685	9080687	.	+	0	source_transcript=hg002_chrY_paternal_170.2;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.2,hg002_chrY_paternal_170.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000254;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000254;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000254;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9081171	9081777	.	+	.	source_transcript=hg002_chrY_paternal_170.2;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.2,hg002_chrY_paternal_170.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000254;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000254;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000254:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9081778	9081855	.	+	.	source_transcript=hg002_chrY_paternal_170.2;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.2,hg002_chrY_paternal_170.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000254;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000254;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000254:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9081778	9081855	.	+	0	source_transcript=hg002_chrY_paternal_170.2;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.2,hg002_chrY_paternal_170.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000254;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000254;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000254:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9081856	9081983	.	+	.	source_transcript=hg002_chrY_paternal_170.2;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.2,hg002_chrY_paternal_170.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000254;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000254;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000254:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9081984	9082095	.	+	.	source_transcript=hg002_chrY_paternal_170.2;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.2,hg002_chrY_paternal_170.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000254;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000254;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000254:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9081984	9082095	.	+	0	source_transcript=hg002_chrY_paternal_170.2;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.2,hg002_chrY_paternal_170.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000254;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000254;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000254:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9082096	9082196	.	+	.	source_transcript=hg002_chrY_paternal_170.2;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.2,hg002_chrY_paternal_170.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000254;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000254;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000254:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9082197	9082342	.	+	.	source_transcript=hg002_chrY_paternal_170.2;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.2,hg002_chrY_paternal_170.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000254;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000254;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000254:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9082197	9082342	.	+	2	source_transcript=hg002_chrY_paternal_170.2;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.2,hg002_chrY_paternal_170.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000254;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000254;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000254:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9082343	9082437	.	+	.	source_transcript=hg002_chrY_paternal_170.2;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.2,hg002_chrY_paternal_170.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000254;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000254;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000254:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9082438	9082530	.	+	.	source_transcript=hg002_chrY_paternal_170.2;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.2,hg002_chrY_paternal_170.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000254;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000254;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000254:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9082438	9082500	.	+	0	source_transcript=hg002_chrY_paternal_170.2;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.2,hg002_chrY_paternal_170.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000254;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000254;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000254:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9082498	9082500	.	+	0	source_transcript=hg002_chrY_paternal_170.2;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.2,hg002_chrY_paternal_170.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000254;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000254;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000254;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9082531	9083224	.	+	.	source_transcript=hg002_chrY_paternal_170.2;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.2,hg002_chrY_paternal_170.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000254;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000254;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000254:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9083225	9083435	.	+	.	source_transcript=hg002_chrY_paternal_170.2;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.2,hg002_chrY_paternal_170.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000254;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000254;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000254:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9080639	9083435	100	+	.	source_transcript=hg002_chrY_paternal_170.3;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.3,hg002_chrY_paternal_170.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000255;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_G0000096;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=HG003_chrY_T0000255;Name=TSPY10
HG003_chrY	CAT	exon	9080639	9081170	.	+	.	source_transcript=hg002_chrY_paternal_170.3;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.3,hg002_chrY_paternal_170.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000255;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000255;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000255:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9080685	9081170	.	+	0	source_transcript=hg002_chrY_paternal_170.3;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.3,hg002_chrY_paternal_170.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000255;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000255;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000255:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9080685	9080687	.	+	0	source_transcript=hg002_chrY_paternal_170.3;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.3,hg002_chrY_paternal_170.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000255;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000255;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000255;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9081171	9081777	.	+	.	source_transcript=hg002_chrY_paternal_170.3;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.3,hg002_chrY_paternal_170.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000255;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000255;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000255:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9081778	9081855	.	+	.	source_transcript=hg002_chrY_paternal_170.3;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.3,hg002_chrY_paternal_170.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000255;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000255;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000255:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9081778	9081855	.	+	0	source_transcript=hg002_chrY_paternal_170.3;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.3,hg002_chrY_paternal_170.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000255;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000255;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000255:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9081856	9081983	.	+	.	source_transcript=hg002_chrY_paternal_170.3;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.3,hg002_chrY_paternal_170.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000255;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000255;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000255:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9081984	9082095	.	+	.	source_transcript=hg002_chrY_paternal_170.3;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.3,hg002_chrY_paternal_170.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000255;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000255;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000255:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9081984	9082095	.	+	0	source_transcript=hg002_chrY_paternal_170.3;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.3,hg002_chrY_paternal_170.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000255;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000255;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000255:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9082096	9082203	.	+	.	source_transcript=hg002_chrY_paternal_170.3;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.3,hg002_chrY_paternal_170.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000255;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000255;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000255:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9082204	9082342	.	+	.	source_transcript=hg002_chrY_paternal_170.3;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.3,hg002_chrY_paternal_170.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000255;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000255;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000255:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9082204	9082342	.	+	2	source_transcript=hg002_chrY_paternal_170.3;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.3,hg002_chrY_paternal_170.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000255;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000255;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000255:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9082343	9082448	.	+	.	source_transcript=hg002_chrY_paternal_170.3;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.3,hg002_chrY_paternal_170.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000255;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000255;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000255:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9082449	9082530	.	+	.	source_transcript=hg002_chrY_paternal_170.3;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.3,hg002_chrY_paternal_170.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000255;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000255;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000255:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9082449	9082500	.	+	1	source_transcript=hg002_chrY_paternal_170.3;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.3,hg002_chrY_paternal_170.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000255;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000255;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000255:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9082498	9082500	.	+	0	source_transcript=hg002_chrY_paternal_170.3;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.3,hg002_chrY_paternal_170.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000255;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000255;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000255;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9082531	9083224	.	+	.	source_transcript=hg002_chrY_paternal_170.3;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.3,hg002_chrY_paternal_170.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000255;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000255;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000255:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9083225	9083435	.	+	.	source_transcript=hg002_chrY_paternal_170.3;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.3,hg002_chrY_paternal_170.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000255;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000255;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000255:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9080639	9083435	1000	+	.	source_transcript=hg002_chrY_paternal_170.4;source_transcript_name=hg002_chrY_paternal_170.1;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_170.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.4,hg002_chrY_paternal_170.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000256;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_G0000096;transcript_name=hg002_chrY_paternal_170.1;gene_name=TSPY10;ID=HG003_chrY_T0000256;Name=TSPY10
HG003_chrY	CAT	exon	9080639	9081170	.	+	.	source_transcript=hg002_chrY_paternal_170.4;source_transcript_name=hg002_chrY_paternal_170.1;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_170.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.4,hg002_chrY_paternal_170.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000256;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000256;transcript_name=hg002_chrY_paternal_170.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000256:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9081171	9081777	.	+	.	source_transcript=hg002_chrY_paternal_170.4;source_transcript_name=hg002_chrY_paternal_170.1;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_170.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.4,hg002_chrY_paternal_170.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000256;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000256;transcript_name=hg002_chrY_paternal_170.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000256:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9081778	9081855	.	+	.	source_transcript=hg002_chrY_paternal_170.4;source_transcript_name=hg002_chrY_paternal_170.1;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_170.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.4,hg002_chrY_paternal_170.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000256;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000256;transcript_name=hg002_chrY_paternal_170.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000256:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9081856	9081983	.	+	.	source_transcript=hg002_chrY_paternal_170.4;source_transcript_name=hg002_chrY_paternal_170.1;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_170.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.4,hg002_chrY_paternal_170.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000256;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000256;transcript_name=hg002_chrY_paternal_170.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000256:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9081984	9082095	.	+	.	source_transcript=hg002_chrY_paternal_170.4;source_transcript_name=hg002_chrY_paternal_170.1;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_170.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.4,hg002_chrY_paternal_170.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000256;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000256;transcript_name=hg002_chrY_paternal_170.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000256:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9082096	9082203	.	+	.	source_transcript=hg002_chrY_paternal_170.4;source_transcript_name=hg002_chrY_paternal_170.1;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_170.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.4,hg002_chrY_paternal_170.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000256;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000256;transcript_name=hg002_chrY_paternal_170.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000256:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9082204	9082342	.	+	.	source_transcript=hg002_chrY_paternal_170.4;source_transcript_name=hg002_chrY_paternal_170.1;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_170.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.4,hg002_chrY_paternal_170.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000256;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000256;transcript_name=hg002_chrY_paternal_170.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000256:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9082343	9082437	.	+	.	source_transcript=hg002_chrY_paternal_170.4;source_transcript_name=hg002_chrY_paternal_170.1;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_170.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.4,hg002_chrY_paternal_170.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000256;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000256;transcript_name=hg002_chrY_paternal_170.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000256:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9082438	9082530	.	+	.	source_transcript=hg002_chrY_paternal_170.4;source_transcript_name=hg002_chrY_paternal_170.1;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_170.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.4,hg002_chrY_paternal_170.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000256;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000256;transcript_name=hg002_chrY_paternal_170.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000256:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9082531	9083224	.	+	.	source_transcript=hg002_chrY_paternal_170.4;source_transcript_name=hg002_chrY_paternal_170.1;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_170.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.4,hg002_chrY_paternal_170.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000256;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000256;transcript_name=hg002_chrY_paternal_170.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000256:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9083225	9083435	.	+	.	source_transcript=hg002_chrY_paternal_170.4;source_transcript_name=hg002_chrY_paternal_170.1;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_170.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.4,hg002_chrY_paternal_170.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000256;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000256;transcript_name=hg002_chrY_paternal_170.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000256:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9092705	9098398	.	-	.	source_gene_common_name=FAM197Y2;source_gene=hg002_chrY_paternal_171;alternative_source_transcripts=hg002_chrY_paternal_171.1,hg002_chrY_paternal_171.1;gene_id=HG003_chrY_G0000097;gene_biotype=lncRNA;gene_name=FAM197Y2;gene_sources=liftoff;ID=HG003_chrY_G0000097;Name=FAM197Y2
HG003_chrY	CAT	transcript	9092705	9098398	1000	-	.	source_transcript=hg002_chrY_paternal_171.1;source_transcript_name=hg002_chrY_paternal_171.1;source_gene=hg002_chrY_paternal_171;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_171;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_171.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_171.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_171.1,hg002_chrY_paternal_171.1;transcript_id=HG003_chrY_T0000257;gene_id=HG003_chrY_G0000097;Parent=HG003_chrY_G0000097;transcript_name=hg002_chrY_paternal_171.1;gene_name=FAM197Y2;ID=HG003_chrY_T0000257;Name=FAM197Y2
HG003_chrY	CAT	exon	9092705	9092764	.	-	.	source_transcript=hg002_chrY_paternal_171.1;source_transcript_name=hg002_chrY_paternal_171.1;source_gene=hg002_chrY_paternal_171;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_171;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_171.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_171.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_171.1,hg002_chrY_paternal_171.1;transcript_id=HG003_chrY_T0000257;gene_id=HG003_chrY_G0000097;Parent=HG003_chrY_T0000257;transcript_name=hg002_chrY_paternal_171.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000257:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9092765	9096314	.	-	.	source_transcript=hg002_chrY_paternal_171.1;source_transcript_name=hg002_chrY_paternal_171.1;source_gene=hg002_chrY_paternal_171;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_171;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_171.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_171.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_171.1,hg002_chrY_paternal_171.1;transcript_id=HG003_chrY_T0000257;gene_id=HG003_chrY_G0000097;Parent=HG003_chrY_T0000257;transcript_name=hg002_chrY_paternal_171.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000257:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9096315	9096473	.	-	.	source_transcript=hg002_chrY_paternal_171.1;source_transcript_name=hg002_chrY_paternal_171.1;source_gene=hg002_chrY_paternal_171;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_171;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_171.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_171.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_171.1,hg002_chrY_paternal_171.1;transcript_id=HG003_chrY_T0000257;gene_id=HG003_chrY_G0000097;Parent=HG003_chrY_T0000257;transcript_name=hg002_chrY_paternal_171.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000257:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9096474	9097975	.	-	.	source_transcript=hg002_chrY_paternal_171.1;source_transcript_name=hg002_chrY_paternal_171.1;source_gene=hg002_chrY_paternal_171;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_171;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_171.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_171.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_171.1,hg002_chrY_paternal_171.1;transcript_id=HG003_chrY_T0000257;gene_id=HG003_chrY_G0000097;Parent=HG003_chrY_T0000257;transcript_name=hg002_chrY_paternal_171.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000257:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9097976	9098121	.	-	.	source_transcript=hg002_chrY_paternal_171.1;source_transcript_name=hg002_chrY_paternal_171.1;source_gene=hg002_chrY_paternal_171;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_171;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_171.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_171.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_171.1,hg002_chrY_paternal_171.1;transcript_id=HG003_chrY_T0000257;gene_id=HG003_chrY_G0000097;Parent=HG003_chrY_T0000257;transcript_name=hg002_chrY_paternal_171.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000257:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9098122	9098207	.	-	.	source_transcript=hg002_chrY_paternal_171.1;source_transcript_name=hg002_chrY_paternal_171.1;source_gene=hg002_chrY_paternal_171;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_171;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_171.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_171.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_171.1,hg002_chrY_paternal_171.1;transcript_id=HG003_chrY_T0000257;gene_id=HG003_chrY_G0000097;Parent=HG003_chrY_T0000257;transcript_name=hg002_chrY_paternal_171.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000257:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9098208	9098398	.	-	.	source_transcript=hg002_chrY_paternal_171.1;source_transcript_name=hg002_chrY_paternal_171.1;source_gene=hg002_chrY_paternal_171;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_171;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_171.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_171.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_171.1,hg002_chrY_paternal_171.1;transcript_id=HG003_chrY_T0000257;gene_id=HG003_chrY_G0000097;Parent=HG003_chrY_T0000257;transcript_name=hg002_chrY_paternal_171.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000257:3;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9100922	9103718	.	+	.	source_gene_common_name=TSPY10;source_gene=hg002_chrY_paternal_172;alternative_source_transcripts=hg002_chrY_paternal_172.1,hg002_chrY_paternal_172.1;gene_id=HG003_chrY_G0000098;gene_biotype=protein_coding;gene_name=TSPY10;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000098;Name=TSPY10
HG003_chrY	CAT	transcript	9100922	9103718	100	+	.	source_transcript=hg002_chrY_paternal_172.1;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.1,hg002_chrY_paternal_172.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000258;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_G0000098;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=HG003_chrY_T0000258;Name=TSPY10
HG003_chrY	CAT	exon	9100922	9101453	.	+	.	source_transcript=hg002_chrY_paternal_172.1;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.1,hg002_chrY_paternal_172.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000258;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000258;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000258:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9100968	9101453	.	+	0	source_transcript=hg002_chrY_paternal_172.1;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.1,hg002_chrY_paternal_172.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000258;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000258;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000258:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9100968	9100970	.	+	0	source_transcript=hg002_chrY_paternal_172.1;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.1,hg002_chrY_paternal_172.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000258;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000258;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000258;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9101454	9102060	.	+	.	source_transcript=hg002_chrY_paternal_172.1;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.1,hg002_chrY_paternal_172.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000258;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000258;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000258:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9102061	9102138	.	+	.	source_transcript=hg002_chrY_paternal_172.1;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.1,hg002_chrY_paternal_172.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000258;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000258;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000258:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9102061	9102138	.	+	0	source_transcript=hg002_chrY_paternal_172.1;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.1,hg002_chrY_paternal_172.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000258;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000258;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000258:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9102139	9102266	.	+	.	source_transcript=hg002_chrY_paternal_172.1;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.1,hg002_chrY_paternal_172.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000258;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000258;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000258:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9102267	9102378	.	+	.	source_transcript=hg002_chrY_paternal_172.1;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.1,hg002_chrY_paternal_172.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000258;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000258;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000258:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9102267	9102378	.	+	0	source_transcript=hg002_chrY_paternal_172.1;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.1,hg002_chrY_paternal_172.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000258;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000258;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000258:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9102379	9102479	.	+	.	source_transcript=hg002_chrY_paternal_172.1;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.1,hg002_chrY_paternal_172.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000258;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000258;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000258:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9102480	9102625	.	+	.	source_transcript=hg002_chrY_paternal_172.1;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.1,hg002_chrY_paternal_172.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000258;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000258;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000258:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9102480	9102625	.	+	2	source_transcript=hg002_chrY_paternal_172.1;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.1,hg002_chrY_paternal_172.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000258;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000258;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000258:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9102626	9102731	.	+	.	source_transcript=hg002_chrY_paternal_172.1;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.1,hg002_chrY_paternal_172.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000258;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000258;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000258:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9102732	9102813	.	+	.	source_transcript=hg002_chrY_paternal_172.1;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.1,hg002_chrY_paternal_172.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000258;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000258;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000258:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9102732	9102813	.	+	0	source_transcript=hg002_chrY_paternal_172.1;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.1,hg002_chrY_paternal_172.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000258;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000258;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000258:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9102814	9103507	.	+	.	source_transcript=hg002_chrY_paternal_172.1;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.1,hg002_chrY_paternal_172.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000258;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000258;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000258:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9103508	9103718	.	+	.	source_transcript=hg002_chrY_paternal_172.1;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.1,hg002_chrY_paternal_172.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000258;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000258;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000258:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9103508	9103530	.	+	2	source_transcript=hg002_chrY_paternal_172.1;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.1,hg002_chrY_paternal_172.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000258;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000258;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000258:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9103528	9103530	.	+	0	source_transcript=hg002_chrY_paternal_172.1;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.1,hg002_chrY_paternal_172.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000258;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000258;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000258;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9100922	9103718	100	+	.	source_transcript=hg002_chrY_paternal_172.2;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.2,hg002_chrY_paternal_172.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000259;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_G0000098;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=HG003_chrY_T0000259;Name=TSPY10
HG003_chrY	CAT	exon	9100922	9101453	.	+	.	source_transcript=hg002_chrY_paternal_172.2;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.2,hg002_chrY_paternal_172.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000259;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000259;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000259:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9100968	9101453	.	+	0	source_transcript=hg002_chrY_paternal_172.2;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.2,hg002_chrY_paternal_172.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000259;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000259;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000259:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9100968	9100970	.	+	0	source_transcript=hg002_chrY_paternal_172.2;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.2,hg002_chrY_paternal_172.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000259;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000259;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000259;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9101454	9102060	.	+	.	source_transcript=hg002_chrY_paternal_172.2;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.2,hg002_chrY_paternal_172.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000259;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000259;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000259:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9102061	9102138	.	+	.	source_transcript=hg002_chrY_paternal_172.2;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.2,hg002_chrY_paternal_172.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000259;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000259;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000259:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9102061	9102138	.	+	0	source_transcript=hg002_chrY_paternal_172.2;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.2,hg002_chrY_paternal_172.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000259;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000259;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000259:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9102139	9102266	.	+	.	source_transcript=hg002_chrY_paternal_172.2;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.2,hg002_chrY_paternal_172.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000259;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000259;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000259:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9102267	9102378	.	+	.	source_transcript=hg002_chrY_paternal_172.2;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.2,hg002_chrY_paternal_172.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000259;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000259;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000259:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9102267	9102378	.	+	0	source_transcript=hg002_chrY_paternal_172.2;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.2,hg002_chrY_paternal_172.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000259;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000259;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000259:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9102379	9102479	.	+	.	source_transcript=hg002_chrY_paternal_172.2;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.2,hg002_chrY_paternal_172.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000259;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000259;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000259:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9102480	9102625	.	+	.	source_transcript=hg002_chrY_paternal_172.2;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.2,hg002_chrY_paternal_172.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000259;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000259;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000259:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9102480	9102625	.	+	2	source_transcript=hg002_chrY_paternal_172.2;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.2,hg002_chrY_paternal_172.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000259;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000259;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000259:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9102626	9102720	.	+	.	source_transcript=hg002_chrY_paternal_172.2;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.2,hg002_chrY_paternal_172.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000259;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000259;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000259:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9102721	9102813	.	+	.	source_transcript=hg002_chrY_paternal_172.2;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.2,hg002_chrY_paternal_172.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000259;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000259;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000259:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9102721	9102783	.	+	0	source_transcript=hg002_chrY_paternal_172.2;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.2,hg002_chrY_paternal_172.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000259;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000259;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000259:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9102781	9102783	.	+	0	source_transcript=hg002_chrY_paternal_172.2;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.2,hg002_chrY_paternal_172.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000259;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000259;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000259;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9102814	9103507	.	+	.	source_transcript=hg002_chrY_paternal_172.2;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.2,hg002_chrY_paternal_172.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000259;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000259;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000259:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9103508	9103718	.	+	.	source_transcript=hg002_chrY_paternal_172.2;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.2,hg002_chrY_paternal_172.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000259;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000259;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000259:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9100922	9103718	100	+	.	source_transcript=hg002_chrY_paternal_172.3;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.3,hg002_chrY_paternal_172.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000260;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_G0000098;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=HG003_chrY_T0000260;Name=TSPY10
HG003_chrY	CAT	exon	9100922	9101453	.	+	.	source_transcript=hg002_chrY_paternal_172.3;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.3,hg002_chrY_paternal_172.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000260;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000260;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000260:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9100968	9101453	.	+	0	source_transcript=hg002_chrY_paternal_172.3;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.3,hg002_chrY_paternal_172.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000260;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000260;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000260:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9100968	9100970	.	+	0	source_transcript=hg002_chrY_paternal_172.3;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.3,hg002_chrY_paternal_172.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000260;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000260;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000260;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9101454	9102060	.	+	.	source_transcript=hg002_chrY_paternal_172.3;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.3,hg002_chrY_paternal_172.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000260;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000260;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000260:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9102061	9102138	.	+	.	source_transcript=hg002_chrY_paternal_172.3;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.3,hg002_chrY_paternal_172.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000260;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000260;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000260:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9102061	9102138	.	+	0	source_transcript=hg002_chrY_paternal_172.3;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.3,hg002_chrY_paternal_172.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000260;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000260;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000260:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9102139	9102266	.	+	.	source_transcript=hg002_chrY_paternal_172.3;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.3,hg002_chrY_paternal_172.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000260;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000260;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000260:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9102267	9102378	.	+	.	source_transcript=hg002_chrY_paternal_172.3;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.3,hg002_chrY_paternal_172.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000260;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000260;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000260:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9102267	9102378	.	+	0	source_transcript=hg002_chrY_paternal_172.3;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.3,hg002_chrY_paternal_172.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000260;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000260;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000260:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9102379	9102486	.	+	.	source_transcript=hg002_chrY_paternal_172.3;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.3,hg002_chrY_paternal_172.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000260;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000260;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000260:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9102487	9102625	.	+	.	source_transcript=hg002_chrY_paternal_172.3;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.3,hg002_chrY_paternal_172.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000260;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000260;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000260:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9102487	9102625	.	+	2	source_transcript=hg002_chrY_paternal_172.3;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.3,hg002_chrY_paternal_172.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000260;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000260;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000260:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9102626	9102731	.	+	.	source_transcript=hg002_chrY_paternal_172.3;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.3,hg002_chrY_paternal_172.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000260;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000260;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000260:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9102732	9102813	.	+	.	source_transcript=hg002_chrY_paternal_172.3;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.3,hg002_chrY_paternal_172.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000260;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000260;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000260:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9102732	9102783	.	+	1	source_transcript=hg002_chrY_paternal_172.3;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.3,hg002_chrY_paternal_172.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000260;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000260;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000260:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9102781	9102783	.	+	0	source_transcript=hg002_chrY_paternal_172.3;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.3,hg002_chrY_paternal_172.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000260;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000260;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000260;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9102814	9103507	.	+	.	source_transcript=hg002_chrY_paternal_172.3;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.3,hg002_chrY_paternal_172.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000260;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000260;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000260:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9103508	9103718	.	+	.	source_transcript=hg002_chrY_paternal_172.3;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.3,hg002_chrY_paternal_172.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000260;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000260;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000260:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9100922	9103718	1000	+	.	source_transcript=hg002_chrY_paternal_172.4;source_transcript_name=hg002_chrY_paternal_172.1;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_172.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.4,hg002_chrY_paternal_172.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000261;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_G0000098;transcript_name=hg002_chrY_paternal_172.1;gene_name=TSPY10;ID=HG003_chrY_T0000261;Name=TSPY10
HG003_chrY	CAT	exon	9100922	9101453	.	+	.	source_transcript=hg002_chrY_paternal_172.4;source_transcript_name=hg002_chrY_paternal_172.1;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_172.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.4,hg002_chrY_paternal_172.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000261;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000261;transcript_name=hg002_chrY_paternal_172.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000261:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9101454	9102060	.	+	.	source_transcript=hg002_chrY_paternal_172.4;source_transcript_name=hg002_chrY_paternal_172.1;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_172.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.4,hg002_chrY_paternal_172.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000261;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000261;transcript_name=hg002_chrY_paternal_172.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000261:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9102061	9102138	.	+	.	source_transcript=hg002_chrY_paternal_172.4;source_transcript_name=hg002_chrY_paternal_172.1;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_172.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.4,hg002_chrY_paternal_172.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000261;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000261;transcript_name=hg002_chrY_paternal_172.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000261:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9102139	9102266	.	+	.	source_transcript=hg002_chrY_paternal_172.4;source_transcript_name=hg002_chrY_paternal_172.1;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_172.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.4,hg002_chrY_paternal_172.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000261;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000261;transcript_name=hg002_chrY_paternal_172.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000261:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9102267	9102378	.	+	.	source_transcript=hg002_chrY_paternal_172.4;source_transcript_name=hg002_chrY_paternal_172.1;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_172.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.4,hg002_chrY_paternal_172.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000261;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000261;transcript_name=hg002_chrY_paternal_172.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000261:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9102379	9102486	.	+	.	source_transcript=hg002_chrY_paternal_172.4;source_transcript_name=hg002_chrY_paternal_172.1;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_172.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.4,hg002_chrY_paternal_172.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000261;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000261;transcript_name=hg002_chrY_paternal_172.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000261:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9102487	9102625	.	+	.	source_transcript=hg002_chrY_paternal_172.4;source_transcript_name=hg002_chrY_paternal_172.1;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_172.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.4,hg002_chrY_paternal_172.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000261;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000261;transcript_name=hg002_chrY_paternal_172.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000261:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9102626	9102720	.	+	.	source_transcript=hg002_chrY_paternal_172.4;source_transcript_name=hg002_chrY_paternal_172.1;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_172.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.4,hg002_chrY_paternal_172.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000261;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000261;transcript_name=hg002_chrY_paternal_172.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000261:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9102721	9102813	.	+	.	source_transcript=hg002_chrY_paternal_172.4;source_transcript_name=hg002_chrY_paternal_172.1;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_172.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.4,hg002_chrY_paternal_172.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000261;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000261;transcript_name=hg002_chrY_paternal_172.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000261:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9102814	9103507	.	+	.	source_transcript=hg002_chrY_paternal_172.4;source_transcript_name=hg002_chrY_paternal_172.1;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_172.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.4,hg002_chrY_paternal_172.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000261;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000261;transcript_name=hg002_chrY_paternal_172.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000261:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9103508	9103718	.	+	.	source_transcript=hg002_chrY_paternal_172.4;source_transcript_name=hg002_chrY_paternal_172.1;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_172.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.4,hg002_chrY_paternal_172.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000261;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000261;transcript_name=hg002_chrY_paternal_172.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000261:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9112979	9118659	.	-	.	source_gene_common_name=FAM197Y2;source_gene=hg002_chrY_paternal_173;alternative_source_transcripts=hg002_chrY_paternal_173.1,hg002_chrY_paternal_173.1;gene_id=HG003_chrY_G0000099;gene_biotype=lncRNA;gene_name=FAM197Y2;gene_sources=liftoff;ID=HG003_chrY_G0000099;Name=FAM197Y2
HG003_chrY	CAT	transcript	9112979	9118659	1000	-	.	source_transcript=hg002_chrY_paternal_173.1;source_transcript_name=hg002_chrY_paternal_173.1;source_gene=hg002_chrY_paternal_173;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_173;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_173.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_173.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_173.1,hg002_chrY_paternal_173.1;transcript_id=HG003_chrY_T0000262;gene_id=HG003_chrY_G0000099;Parent=HG003_chrY_G0000099;transcript_name=hg002_chrY_paternal_173.1;gene_name=FAM197Y2;ID=HG003_chrY_T0000262;Name=FAM197Y2
HG003_chrY	CAT	exon	9112979	9113038	.	-	.	source_transcript=hg002_chrY_paternal_173.1;source_transcript_name=hg002_chrY_paternal_173.1;source_gene=hg002_chrY_paternal_173;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_173;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_173.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_173.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_173.1,hg002_chrY_paternal_173.1;transcript_id=HG003_chrY_T0000262;gene_id=HG003_chrY_G0000099;Parent=HG003_chrY_T0000262;transcript_name=hg002_chrY_paternal_173.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000262:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9113039	9116587	.	-	.	source_transcript=hg002_chrY_paternal_173.1;source_transcript_name=hg002_chrY_paternal_173.1;source_gene=hg002_chrY_paternal_173;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_173;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_173.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_173.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_173.1,hg002_chrY_paternal_173.1;transcript_id=HG003_chrY_T0000262;gene_id=HG003_chrY_G0000099;Parent=HG003_chrY_T0000262;transcript_name=hg002_chrY_paternal_173.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000262:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9116588	9116746	.	-	.	source_transcript=hg002_chrY_paternal_173.1;source_transcript_name=hg002_chrY_paternal_173.1;source_gene=hg002_chrY_paternal_173;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_173;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_173.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_173.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_173.1,hg002_chrY_paternal_173.1;transcript_id=HG003_chrY_T0000262;gene_id=HG003_chrY_G0000099;Parent=HG003_chrY_T0000262;transcript_name=hg002_chrY_paternal_173.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000262:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9116747	9118236	.	-	.	source_transcript=hg002_chrY_paternal_173.1;source_transcript_name=hg002_chrY_paternal_173.1;source_gene=hg002_chrY_paternal_173;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_173;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_173.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_173.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_173.1,hg002_chrY_paternal_173.1;transcript_id=HG003_chrY_T0000262;gene_id=HG003_chrY_G0000099;Parent=HG003_chrY_T0000262;transcript_name=hg002_chrY_paternal_173.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000262:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9118237	9118382	.	-	.	source_transcript=hg002_chrY_paternal_173.1;source_transcript_name=hg002_chrY_paternal_173.1;source_gene=hg002_chrY_paternal_173;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_173;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_173.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_173.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_173.1,hg002_chrY_paternal_173.1;transcript_id=HG003_chrY_T0000262;gene_id=HG003_chrY_G0000099;Parent=HG003_chrY_T0000262;transcript_name=hg002_chrY_paternal_173.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000262:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9118383	9118468	.	-	.	source_transcript=hg002_chrY_paternal_173.1;source_transcript_name=hg002_chrY_paternal_173.1;source_gene=hg002_chrY_paternal_173;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_173;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_173.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_173.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_173.1,hg002_chrY_paternal_173.1;transcript_id=HG003_chrY_T0000262;gene_id=HG003_chrY_G0000099;Parent=HG003_chrY_T0000262;transcript_name=hg002_chrY_paternal_173.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000262:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9118469	9118659	.	-	.	source_transcript=hg002_chrY_paternal_173.1;source_transcript_name=hg002_chrY_paternal_173.1;source_gene=hg002_chrY_paternal_173;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_173;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_173.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_173.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_173.1,hg002_chrY_paternal_173.1;transcript_id=HG003_chrY_T0000262;gene_id=HG003_chrY_G0000099;Parent=HG003_chrY_T0000262;transcript_name=hg002_chrY_paternal_173.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000262:3;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9121183	9123997	.	+	.	source_gene_common_name=TSPY4;source_gene=hg002_chrY_paternal_174;alternative_source_transcripts=hg002_chrY_paternal_174.1,hg002_chrY_paternal_174.1;gene_id=HG003_chrY_G0000100;gene_biotype=protein_coding;gene_name=TSPY4;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000100;Name=TSPY4
HG003_chrY	CAT	transcript	9121183	9123997	100	+	.	source_transcript=hg002_chrY_paternal_174.1;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.1,hg002_chrY_paternal_174.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000263;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_G0000100;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=HG003_chrY_T0000263;Name=TSPY4
HG003_chrY	CAT	exon	9121183	9121732	.	+	.	source_transcript=hg002_chrY_paternal_174.1;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.1,hg002_chrY_paternal_174.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000263;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000263;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000263:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9121229	9121732	.	+	0	source_transcript=hg002_chrY_paternal_174.1;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.1,hg002_chrY_paternal_174.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000263;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000263;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000263:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9121229	9121231	.	+	0	source_transcript=hg002_chrY_paternal_174.1;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.1,hg002_chrY_paternal_174.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000263;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000263;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=start_codon:HG003_chrY_T0000263;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9121733	9122339	.	+	.	source_transcript=hg002_chrY_paternal_174.1;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.1,hg002_chrY_paternal_174.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000263;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000263;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000263:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9122340	9122417	.	+	.	source_transcript=hg002_chrY_paternal_174.1;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.1,hg002_chrY_paternal_174.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000263;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000263;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000263:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9122340	9122417	.	+	0	source_transcript=hg002_chrY_paternal_174.1;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.1,hg002_chrY_paternal_174.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000263;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000263;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000263:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9122418	9122545	.	+	.	source_transcript=hg002_chrY_paternal_174.1;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.1,hg002_chrY_paternal_174.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000263;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000263;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000263:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9122546	9122657	.	+	.	source_transcript=hg002_chrY_paternal_174.1;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.1,hg002_chrY_paternal_174.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000263;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000263;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000263:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9122546	9122657	.	+	0	source_transcript=hg002_chrY_paternal_174.1;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.1,hg002_chrY_paternal_174.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000263;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000263;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000263:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9122658	9122758	.	+	.	source_transcript=hg002_chrY_paternal_174.1;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.1,hg002_chrY_paternal_174.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000263;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000263;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000263:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9122759	9122904	.	+	.	source_transcript=hg002_chrY_paternal_174.1;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.1,hg002_chrY_paternal_174.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000263;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000263;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000263:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9122759	9122904	.	+	2	source_transcript=hg002_chrY_paternal_174.1;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.1,hg002_chrY_paternal_174.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000263;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000263;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000263:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9122905	9123010	.	+	.	source_transcript=hg002_chrY_paternal_174.1;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.1,hg002_chrY_paternal_174.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000263;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000263;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000263:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9123011	9123092	.	+	.	source_transcript=hg002_chrY_paternal_174.1;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.1,hg002_chrY_paternal_174.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000263;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000263;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000263:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9123011	9123092	.	+	0	source_transcript=hg002_chrY_paternal_174.1;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.1,hg002_chrY_paternal_174.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000263;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000263;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000263:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9123093	9123786	.	+	.	source_transcript=hg002_chrY_paternal_174.1;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.1,hg002_chrY_paternal_174.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000263;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000263;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000263:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9123787	9123997	.	+	.	source_transcript=hg002_chrY_paternal_174.1;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.1,hg002_chrY_paternal_174.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000263;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000263;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000263:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9123787	9123809	.	+	2	source_transcript=hg002_chrY_paternal_174.1;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.1,hg002_chrY_paternal_174.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000263;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000263;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000263:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9123807	9123809	.	+	0	source_transcript=hg002_chrY_paternal_174.1;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.1,hg002_chrY_paternal_174.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000263;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000263;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=stop_codon:HG003_chrY_T0000263;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9121183	9123997	100	+	.	source_transcript=hg002_chrY_paternal_174.2;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.2,hg002_chrY_paternal_174.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000264;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_G0000100;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=HG003_chrY_T0000264;Name=TSPY4
HG003_chrY	CAT	exon	9121183	9121732	.	+	.	source_transcript=hg002_chrY_paternal_174.2;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.2,hg002_chrY_paternal_174.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000264;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000264;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000264:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9121229	9121732	.	+	0	source_transcript=hg002_chrY_paternal_174.2;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.2,hg002_chrY_paternal_174.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000264;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000264;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000264:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9121229	9121231	.	+	0	source_transcript=hg002_chrY_paternal_174.2;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.2,hg002_chrY_paternal_174.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000264;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000264;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=start_codon:HG003_chrY_T0000264;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9121733	9122339	.	+	.	source_transcript=hg002_chrY_paternal_174.2;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.2,hg002_chrY_paternal_174.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000264;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000264;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000264:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9122340	9122417	.	+	.	source_transcript=hg002_chrY_paternal_174.2;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.2,hg002_chrY_paternal_174.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000264;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000264;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000264:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9122340	9122417	.	+	0	source_transcript=hg002_chrY_paternal_174.2;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.2,hg002_chrY_paternal_174.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000264;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000264;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000264:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9122418	9122545	.	+	.	source_transcript=hg002_chrY_paternal_174.2;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.2,hg002_chrY_paternal_174.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000264;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000264;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000264:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9122546	9122657	.	+	.	source_transcript=hg002_chrY_paternal_174.2;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.2,hg002_chrY_paternal_174.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000264;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000264;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000264:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9122546	9122657	.	+	0	source_transcript=hg002_chrY_paternal_174.2;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.2,hg002_chrY_paternal_174.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000264;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000264;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000264:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9122658	9122758	.	+	.	source_transcript=hg002_chrY_paternal_174.2;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.2,hg002_chrY_paternal_174.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000264;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000264;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000264:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9122759	9122904	.	+	.	source_transcript=hg002_chrY_paternal_174.2;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.2,hg002_chrY_paternal_174.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000264;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000264;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000264:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9122759	9122904	.	+	2	source_transcript=hg002_chrY_paternal_174.2;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.2,hg002_chrY_paternal_174.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000264;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000264;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000264:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9122905	9122999	.	+	.	source_transcript=hg002_chrY_paternal_174.2;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.2,hg002_chrY_paternal_174.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000264;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000264;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000264:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9123000	9123092	.	+	.	source_transcript=hg002_chrY_paternal_174.2;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.2,hg002_chrY_paternal_174.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000264;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000264;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000264:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9123000	9123062	.	+	0	source_transcript=hg002_chrY_paternal_174.2;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.2,hg002_chrY_paternal_174.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000264;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000264;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000264:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9123060	9123062	.	+	0	source_transcript=hg002_chrY_paternal_174.2;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.2,hg002_chrY_paternal_174.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000264;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000264;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=stop_codon:HG003_chrY_T0000264;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9123093	9123786	.	+	.	source_transcript=hg002_chrY_paternal_174.2;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.2,hg002_chrY_paternal_174.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000264;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000264;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000264:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9123787	9123997	.	+	.	source_transcript=hg002_chrY_paternal_174.2;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.2,hg002_chrY_paternal_174.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000264;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000264;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000264:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9121183	9123997	100	+	.	source_transcript=hg002_chrY_paternal_174.3;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.3,hg002_chrY_paternal_174.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000265;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_G0000100;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=HG003_chrY_T0000265;Name=TSPY4
HG003_chrY	CAT	exon	9121183	9121732	.	+	.	source_transcript=hg002_chrY_paternal_174.3;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.3,hg002_chrY_paternal_174.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000265;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000265;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000265:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9121229	9121732	.	+	0	source_transcript=hg002_chrY_paternal_174.3;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.3,hg002_chrY_paternal_174.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000265;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000265;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000265:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9121229	9121231	.	+	0	source_transcript=hg002_chrY_paternal_174.3;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.3,hg002_chrY_paternal_174.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000265;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000265;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=start_codon:HG003_chrY_T0000265;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9121733	9122339	.	+	.	source_transcript=hg002_chrY_paternal_174.3;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.3,hg002_chrY_paternal_174.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000265;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000265;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000265:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9122340	9122417	.	+	.	source_transcript=hg002_chrY_paternal_174.3;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.3,hg002_chrY_paternal_174.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000265;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000265;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000265:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9122340	9122417	.	+	0	source_transcript=hg002_chrY_paternal_174.3;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.3,hg002_chrY_paternal_174.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000265;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000265;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000265:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9122418	9122545	.	+	.	source_transcript=hg002_chrY_paternal_174.3;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.3,hg002_chrY_paternal_174.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000265;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000265;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000265:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9122546	9122657	.	+	.	source_transcript=hg002_chrY_paternal_174.3;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.3,hg002_chrY_paternal_174.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000265;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000265;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000265:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9122546	9122657	.	+	0	source_transcript=hg002_chrY_paternal_174.3;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.3,hg002_chrY_paternal_174.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000265;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000265;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000265:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9122658	9122765	.	+	.	source_transcript=hg002_chrY_paternal_174.3;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.3,hg002_chrY_paternal_174.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000265;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000265;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000265:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9122766	9122904	.	+	.	source_transcript=hg002_chrY_paternal_174.3;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.3,hg002_chrY_paternal_174.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000265;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000265;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000265:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9122766	9122904	.	+	2	source_transcript=hg002_chrY_paternal_174.3;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.3,hg002_chrY_paternal_174.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000265;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000265;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000265:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9122905	9123010	.	+	.	source_transcript=hg002_chrY_paternal_174.3;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.3,hg002_chrY_paternal_174.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000265;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000265;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000265:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9123011	9123092	.	+	.	source_transcript=hg002_chrY_paternal_174.3;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.3,hg002_chrY_paternal_174.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000265;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000265;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000265:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9123011	9123062	.	+	1	source_transcript=hg002_chrY_paternal_174.3;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.3,hg002_chrY_paternal_174.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000265;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000265;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000265:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9123060	9123062	.	+	0	source_transcript=hg002_chrY_paternal_174.3;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.3,hg002_chrY_paternal_174.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000265;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000265;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=stop_codon:HG003_chrY_T0000265;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9123093	9123786	.	+	.	source_transcript=hg002_chrY_paternal_174.3;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.3,hg002_chrY_paternal_174.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000265;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000265;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000265:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9123787	9123997	.	+	.	source_transcript=hg002_chrY_paternal_174.3;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.3,hg002_chrY_paternal_174.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000265;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000265;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000265:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9121183	9123997	1000	+	.	source_transcript=hg002_chrY_paternal_174.4;source_transcript_name=hg002_chrY_paternal_174.1;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_174.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.4,hg002_chrY_paternal_174.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000266;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_G0000100;transcript_name=hg002_chrY_paternal_174.1;gene_name=TSPY4;ID=HG003_chrY_T0000266;Name=TSPY4
HG003_chrY	CAT	exon	9121183	9121732	.	+	.	source_transcript=hg002_chrY_paternal_174.4;source_transcript_name=hg002_chrY_paternal_174.1;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_174.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.4,hg002_chrY_paternal_174.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000266;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000266;transcript_name=hg002_chrY_paternal_174.1;gene_name=TSPY4;ID=exon:HG003_chrY_T0000266:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9121733	9122339	.	+	.	source_transcript=hg002_chrY_paternal_174.4;source_transcript_name=hg002_chrY_paternal_174.1;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_174.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.4,hg002_chrY_paternal_174.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000266;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000266;transcript_name=hg002_chrY_paternal_174.1;gene_name=TSPY4;ID=intron:HG003_chrY_T0000266:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9122340	9122417	.	+	.	source_transcript=hg002_chrY_paternal_174.4;source_transcript_name=hg002_chrY_paternal_174.1;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_174.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.4,hg002_chrY_paternal_174.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000266;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000266;transcript_name=hg002_chrY_paternal_174.1;gene_name=TSPY4;ID=exon:HG003_chrY_T0000266:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9122418	9122545	.	+	.	source_transcript=hg002_chrY_paternal_174.4;source_transcript_name=hg002_chrY_paternal_174.1;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_174.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.4,hg002_chrY_paternal_174.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000266;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000266;transcript_name=hg002_chrY_paternal_174.1;gene_name=TSPY4;ID=intron:HG003_chrY_T0000266:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9122546	9122657	.	+	.	source_transcript=hg002_chrY_paternal_174.4;source_transcript_name=hg002_chrY_paternal_174.1;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_174.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.4,hg002_chrY_paternal_174.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000266;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000266;transcript_name=hg002_chrY_paternal_174.1;gene_name=TSPY4;ID=exon:HG003_chrY_T0000266:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9122658	9122765	.	+	.	source_transcript=hg002_chrY_paternal_174.4;source_transcript_name=hg002_chrY_paternal_174.1;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_174.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.4,hg002_chrY_paternal_174.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000266;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000266;transcript_name=hg002_chrY_paternal_174.1;gene_name=TSPY4;ID=intron:HG003_chrY_T0000266:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9122766	9122904	.	+	.	source_transcript=hg002_chrY_paternal_174.4;source_transcript_name=hg002_chrY_paternal_174.1;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_174.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.4,hg002_chrY_paternal_174.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000266;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000266;transcript_name=hg002_chrY_paternal_174.1;gene_name=TSPY4;ID=exon:HG003_chrY_T0000266:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9122905	9122999	.	+	.	source_transcript=hg002_chrY_paternal_174.4;source_transcript_name=hg002_chrY_paternal_174.1;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_174.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.4,hg002_chrY_paternal_174.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000266;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000266;transcript_name=hg002_chrY_paternal_174.1;gene_name=TSPY4;ID=intron:HG003_chrY_T0000266:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9123000	9123092	.	+	.	source_transcript=hg002_chrY_paternal_174.4;source_transcript_name=hg002_chrY_paternal_174.1;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_174.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.4,hg002_chrY_paternal_174.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000266;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000266;transcript_name=hg002_chrY_paternal_174.1;gene_name=TSPY4;ID=exon:HG003_chrY_T0000266:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9123093	9123786	.	+	.	source_transcript=hg002_chrY_paternal_174.4;source_transcript_name=hg002_chrY_paternal_174.1;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_174.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.4,hg002_chrY_paternal_174.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000266;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000266;transcript_name=hg002_chrY_paternal_174.1;gene_name=TSPY4;ID=intron:HG003_chrY_T0000266:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9123787	9123997	.	+	.	source_transcript=hg002_chrY_paternal_174.4;source_transcript_name=hg002_chrY_paternal_174.1;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_174.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_174.4,hg002_chrY_paternal_174.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000266;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000266;transcript_name=hg002_chrY_paternal_174.1;gene_name=TSPY4;ID=exon:HG003_chrY_T0000266:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9133288	9138974	.	-	.	source_gene_common_name=FAM197Y2;source_gene=hg002_chrY_paternal_175;alternative_source_transcripts=hg002_chrY_paternal_175.1,hg002_chrY_paternal_175.1;gene_id=HG003_chrY_G0000101;gene_biotype=lncRNA;gene_name=FAM197Y2;gene_sources=liftoff;ID=HG003_chrY_G0000101;Name=FAM197Y2
HG003_chrY	CAT	transcript	9133288	9138974	1000	-	.	source_transcript=hg002_chrY_paternal_175.1;source_transcript_name=hg002_chrY_paternal_175.1;source_gene=hg002_chrY_paternal_175;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_175;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_175.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_175.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_175.1,hg002_chrY_paternal_175.1;transcript_id=HG003_chrY_T0000267;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_G0000101;transcript_name=hg002_chrY_paternal_175.1;gene_name=FAM197Y2;ID=HG003_chrY_T0000267;Name=FAM197Y2
HG003_chrY	CAT	exon	9133288	9133347	.	-	.	source_transcript=hg002_chrY_paternal_175.1;source_transcript_name=hg002_chrY_paternal_175.1;source_gene=hg002_chrY_paternal_175;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_175;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_175.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_175.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_175.1,hg002_chrY_paternal_175.1;transcript_id=HG003_chrY_T0000267;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000267;transcript_name=hg002_chrY_paternal_175.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000267:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9133348	9136896	.	-	.	source_transcript=hg002_chrY_paternal_175.1;source_transcript_name=hg002_chrY_paternal_175.1;source_gene=hg002_chrY_paternal_175;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_175;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_175.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_175.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_175.1,hg002_chrY_paternal_175.1;transcript_id=HG003_chrY_T0000267;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000267;transcript_name=hg002_chrY_paternal_175.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000267:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9136897	9137055	.	-	.	source_transcript=hg002_chrY_paternal_175.1;source_transcript_name=hg002_chrY_paternal_175.1;source_gene=hg002_chrY_paternal_175;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_175;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_175.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_175.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_175.1,hg002_chrY_paternal_175.1;transcript_id=HG003_chrY_T0000267;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000267;transcript_name=hg002_chrY_paternal_175.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000267:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9137056	9138551	.	-	.	source_transcript=hg002_chrY_paternal_175.1;source_transcript_name=hg002_chrY_paternal_175.1;source_gene=hg002_chrY_paternal_175;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_175;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_175.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_175.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_175.1,hg002_chrY_paternal_175.1;transcript_id=HG003_chrY_T0000267;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000267;transcript_name=hg002_chrY_paternal_175.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000267:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9138552	9138697	.	-	.	source_transcript=hg002_chrY_paternal_175.1;source_transcript_name=hg002_chrY_paternal_175.1;source_gene=hg002_chrY_paternal_175;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_175;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_175.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_175.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_175.1,hg002_chrY_paternal_175.1;transcript_id=HG003_chrY_T0000267;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000267;transcript_name=hg002_chrY_paternal_175.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000267:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9138698	9138783	.	-	.	source_transcript=hg002_chrY_paternal_175.1;source_transcript_name=hg002_chrY_paternal_175.1;source_gene=hg002_chrY_paternal_175;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_175;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_175.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_175.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_175.1,hg002_chrY_paternal_175.1;transcript_id=HG003_chrY_T0000267;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000267;transcript_name=hg002_chrY_paternal_175.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000267:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9138784	9138974	.	-	.	source_transcript=hg002_chrY_paternal_175.1;source_transcript_name=hg002_chrY_paternal_175.1;source_gene=hg002_chrY_paternal_175;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_175;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_175.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_175.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_175.1,hg002_chrY_paternal_175.1;transcript_id=HG003_chrY_T0000267;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000267;transcript_name=hg002_chrY_paternal_175.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000267:3;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9141498	9144294	.	+	.	source_gene_common_name=TSPY3;source_gene=hg002_chrY_paternal_176;alternative_source_transcripts=hg002_chrY_paternal_176.1,hg002_chrY_paternal_176.1;gene_id=HG003_chrY_G0000102;gene_biotype=protein_coding;gene_name=TSPY3;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000102;Name=TSPY3
HG003_chrY	CAT	transcript	9141498	9144294	100	+	.	source_transcript=hg002_chrY_paternal_176.1;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.1,hg002_chrY_paternal_176.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000268;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_G0000102;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=HG003_chrY_T0000268;Name=TSPY3
HG003_chrY	CAT	exon	9141498	9142029	.	+	.	source_transcript=hg002_chrY_paternal_176.1;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.1,hg002_chrY_paternal_176.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000268;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000268;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000268:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9141544	9142029	.	+	0	source_transcript=hg002_chrY_paternal_176.1;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.1,hg002_chrY_paternal_176.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000268;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000268;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000268:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9141544	9141546	.	+	0	source_transcript=hg002_chrY_paternal_176.1;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.1,hg002_chrY_paternal_176.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000268;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000268;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000268;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9142030	9142636	.	+	.	source_transcript=hg002_chrY_paternal_176.1;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.1,hg002_chrY_paternal_176.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000268;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000268;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000268:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9142637	9142714	.	+	.	source_transcript=hg002_chrY_paternal_176.1;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.1,hg002_chrY_paternal_176.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000268;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000268;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000268:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9142637	9142714	.	+	0	source_transcript=hg002_chrY_paternal_176.1;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.1,hg002_chrY_paternal_176.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000268;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000268;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000268:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9142715	9142842	.	+	.	source_transcript=hg002_chrY_paternal_176.1;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.1,hg002_chrY_paternal_176.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000268;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000268;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000268:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9142843	9142954	.	+	.	source_transcript=hg002_chrY_paternal_176.1;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.1,hg002_chrY_paternal_176.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000268;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000268;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000268:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9142843	9142954	.	+	0	source_transcript=hg002_chrY_paternal_176.1;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.1,hg002_chrY_paternal_176.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000268;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000268;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000268:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9142955	9143055	.	+	.	source_transcript=hg002_chrY_paternal_176.1;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.1,hg002_chrY_paternal_176.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000268;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000268;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000268:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9143056	9143201	.	+	.	source_transcript=hg002_chrY_paternal_176.1;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.1,hg002_chrY_paternal_176.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000268;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000268;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000268:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9143056	9143201	.	+	2	source_transcript=hg002_chrY_paternal_176.1;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.1,hg002_chrY_paternal_176.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000268;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000268;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000268:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9143202	9143307	.	+	.	source_transcript=hg002_chrY_paternal_176.1;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.1,hg002_chrY_paternal_176.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000268;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000268;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000268:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9143308	9143389	.	+	.	source_transcript=hg002_chrY_paternal_176.1;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.1,hg002_chrY_paternal_176.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000268;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000268;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000268:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9143308	9143389	.	+	0	source_transcript=hg002_chrY_paternal_176.1;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.1,hg002_chrY_paternal_176.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000268;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000268;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000268:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9143390	9144083	.	+	.	source_transcript=hg002_chrY_paternal_176.1;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.1,hg002_chrY_paternal_176.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000268;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000268;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000268:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9144084	9144294	.	+	.	source_transcript=hg002_chrY_paternal_176.1;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.1,hg002_chrY_paternal_176.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000268;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000268;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000268:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9144084	9144106	.	+	2	source_transcript=hg002_chrY_paternal_176.1;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.1,hg002_chrY_paternal_176.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000268;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000268;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000268:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9144104	9144106	.	+	0	source_transcript=hg002_chrY_paternal_176.1;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.1,hg002_chrY_paternal_176.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000268;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000268;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000268;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9141498	9144294	100	+	.	source_transcript=hg002_chrY_paternal_176.2;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.2,hg002_chrY_paternal_176.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000269;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_G0000102;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=HG003_chrY_T0000269;Name=TSPY3
HG003_chrY	CAT	exon	9141498	9142029	.	+	.	source_transcript=hg002_chrY_paternal_176.2;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.2,hg002_chrY_paternal_176.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000269;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000269;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000269:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9141544	9142029	.	+	0	source_transcript=hg002_chrY_paternal_176.2;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.2,hg002_chrY_paternal_176.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000269;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000269;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000269:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9141544	9141546	.	+	0	source_transcript=hg002_chrY_paternal_176.2;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.2,hg002_chrY_paternal_176.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000269;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000269;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000269;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9142030	9142636	.	+	.	source_transcript=hg002_chrY_paternal_176.2;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.2,hg002_chrY_paternal_176.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000269;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000269;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000269:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9142637	9142714	.	+	.	source_transcript=hg002_chrY_paternal_176.2;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.2,hg002_chrY_paternal_176.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000269;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000269;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000269:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9142637	9142714	.	+	0	source_transcript=hg002_chrY_paternal_176.2;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.2,hg002_chrY_paternal_176.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000269;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000269;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000269:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9142715	9142842	.	+	.	source_transcript=hg002_chrY_paternal_176.2;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.2,hg002_chrY_paternal_176.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000269;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000269;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000269:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9142843	9142954	.	+	.	source_transcript=hg002_chrY_paternal_176.2;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.2,hg002_chrY_paternal_176.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000269;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000269;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000269:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9142843	9142954	.	+	0	source_transcript=hg002_chrY_paternal_176.2;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.2,hg002_chrY_paternal_176.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000269;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000269;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000269:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9142955	9143055	.	+	.	source_transcript=hg002_chrY_paternal_176.2;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.2,hg002_chrY_paternal_176.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000269;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000269;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000269:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9143056	9143201	.	+	.	source_transcript=hg002_chrY_paternal_176.2;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.2,hg002_chrY_paternal_176.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000269;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000269;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000269:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9143056	9143201	.	+	2	source_transcript=hg002_chrY_paternal_176.2;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.2,hg002_chrY_paternal_176.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000269;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000269;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000269:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9143202	9143296	.	+	.	source_transcript=hg002_chrY_paternal_176.2;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.2,hg002_chrY_paternal_176.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000269;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000269;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000269:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9143297	9143389	.	+	.	source_transcript=hg002_chrY_paternal_176.2;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.2,hg002_chrY_paternal_176.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000269;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000269;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000269:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9143297	9143359	.	+	0	source_transcript=hg002_chrY_paternal_176.2;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.2,hg002_chrY_paternal_176.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000269;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000269;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000269:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9143357	9143359	.	+	0	source_transcript=hg002_chrY_paternal_176.2;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.2,hg002_chrY_paternal_176.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000269;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000269;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000269;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9143390	9144083	.	+	.	source_transcript=hg002_chrY_paternal_176.2;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.2,hg002_chrY_paternal_176.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000269;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000269;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000269:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9144084	9144294	.	+	.	source_transcript=hg002_chrY_paternal_176.2;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.2,hg002_chrY_paternal_176.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000269;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000269;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000269:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9141498	9144294	100	+	.	source_transcript=hg002_chrY_paternal_176.3;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.3,hg002_chrY_paternal_176.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000270;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_G0000102;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=HG003_chrY_T0000270;Name=TSPY3
HG003_chrY	CAT	exon	9141498	9142029	.	+	.	source_transcript=hg002_chrY_paternal_176.3;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.3,hg002_chrY_paternal_176.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000270;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000270;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000270:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9141544	9142029	.	+	0	source_transcript=hg002_chrY_paternal_176.3;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.3,hg002_chrY_paternal_176.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000270;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000270;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000270:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9141544	9141546	.	+	0	source_transcript=hg002_chrY_paternal_176.3;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.3,hg002_chrY_paternal_176.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000270;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000270;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000270;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9142030	9142636	.	+	.	source_transcript=hg002_chrY_paternal_176.3;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.3,hg002_chrY_paternal_176.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000270;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000270;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000270:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9142637	9142714	.	+	.	source_transcript=hg002_chrY_paternal_176.3;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.3,hg002_chrY_paternal_176.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000270;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000270;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000270:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9142637	9142714	.	+	0	source_transcript=hg002_chrY_paternal_176.3;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.3,hg002_chrY_paternal_176.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000270;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000270;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000270:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9142715	9142842	.	+	.	source_transcript=hg002_chrY_paternal_176.3;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.3,hg002_chrY_paternal_176.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000270;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000270;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000270:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9142843	9142954	.	+	.	source_transcript=hg002_chrY_paternal_176.3;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.3,hg002_chrY_paternal_176.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000270;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000270;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000270:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9142843	9142954	.	+	0	source_transcript=hg002_chrY_paternal_176.3;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.3,hg002_chrY_paternal_176.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000270;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000270;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000270:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9142955	9143062	.	+	.	source_transcript=hg002_chrY_paternal_176.3;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.3,hg002_chrY_paternal_176.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000270;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000270;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000270:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9143063	9143201	.	+	.	source_transcript=hg002_chrY_paternal_176.3;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.3,hg002_chrY_paternal_176.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000270;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000270;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000270:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9143063	9143201	.	+	2	source_transcript=hg002_chrY_paternal_176.3;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.3,hg002_chrY_paternal_176.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000270;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000270;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000270:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9143202	9143307	.	+	.	source_transcript=hg002_chrY_paternal_176.3;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.3,hg002_chrY_paternal_176.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000270;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000270;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000270:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9143308	9143389	.	+	.	source_transcript=hg002_chrY_paternal_176.3;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.3,hg002_chrY_paternal_176.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000270;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000270;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000270:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9143308	9143359	.	+	1	source_transcript=hg002_chrY_paternal_176.3;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.3,hg002_chrY_paternal_176.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000270;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000270;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000270:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9143357	9143359	.	+	0	source_transcript=hg002_chrY_paternal_176.3;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.3,hg002_chrY_paternal_176.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000270;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000270;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000270;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9143390	9144083	.	+	.	source_transcript=hg002_chrY_paternal_176.3;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.3,hg002_chrY_paternal_176.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000270;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000270;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000270:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9144084	9144294	.	+	.	source_transcript=hg002_chrY_paternal_176.3;source_transcript_name=hg002_chrY_paternal_176.4;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_176.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.3,hg002_chrY_paternal_176.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000270;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000270;transcript_name=hg002_chrY_paternal_176.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000270:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9141498	9144294	1000	+	.	source_transcript=hg002_chrY_paternal_176.4;source_transcript_name=hg002_chrY_paternal_176.1;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_176.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.4,hg002_chrY_paternal_176.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000271;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_G0000102;transcript_name=hg002_chrY_paternal_176.1;gene_name=TSPY3;ID=HG003_chrY_T0000271;Name=TSPY3
HG003_chrY	CAT	exon	9141498	9142029	.	+	.	source_transcript=hg002_chrY_paternal_176.4;source_transcript_name=hg002_chrY_paternal_176.1;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_176.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.4,hg002_chrY_paternal_176.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000271;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000271;transcript_name=hg002_chrY_paternal_176.1;gene_name=TSPY3;ID=exon:HG003_chrY_T0000271:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9142030	9142636	.	+	.	source_transcript=hg002_chrY_paternal_176.4;source_transcript_name=hg002_chrY_paternal_176.1;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_176.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.4,hg002_chrY_paternal_176.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000271;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000271;transcript_name=hg002_chrY_paternal_176.1;gene_name=TSPY3;ID=intron:HG003_chrY_T0000271:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9142637	9142714	.	+	.	source_transcript=hg002_chrY_paternal_176.4;source_transcript_name=hg002_chrY_paternal_176.1;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_176.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.4,hg002_chrY_paternal_176.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000271;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000271;transcript_name=hg002_chrY_paternal_176.1;gene_name=TSPY3;ID=exon:HG003_chrY_T0000271:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9142715	9142842	.	+	.	source_transcript=hg002_chrY_paternal_176.4;source_transcript_name=hg002_chrY_paternal_176.1;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_176.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.4,hg002_chrY_paternal_176.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000271;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000271;transcript_name=hg002_chrY_paternal_176.1;gene_name=TSPY3;ID=intron:HG003_chrY_T0000271:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9142843	9142954	.	+	.	source_transcript=hg002_chrY_paternal_176.4;source_transcript_name=hg002_chrY_paternal_176.1;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_176.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.4,hg002_chrY_paternal_176.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000271;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000271;transcript_name=hg002_chrY_paternal_176.1;gene_name=TSPY3;ID=exon:HG003_chrY_T0000271:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9142955	9143062	.	+	.	source_transcript=hg002_chrY_paternal_176.4;source_transcript_name=hg002_chrY_paternal_176.1;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_176.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.4,hg002_chrY_paternal_176.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000271;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000271;transcript_name=hg002_chrY_paternal_176.1;gene_name=TSPY3;ID=intron:HG003_chrY_T0000271:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9143063	9143201	.	+	.	source_transcript=hg002_chrY_paternal_176.4;source_transcript_name=hg002_chrY_paternal_176.1;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_176.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.4,hg002_chrY_paternal_176.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000271;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000271;transcript_name=hg002_chrY_paternal_176.1;gene_name=TSPY3;ID=exon:HG003_chrY_T0000271:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9143202	9143296	.	+	.	source_transcript=hg002_chrY_paternal_176.4;source_transcript_name=hg002_chrY_paternal_176.1;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_176.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.4,hg002_chrY_paternal_176.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000271;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000271;transcript_name=hg002_chrY_paternal_176.1;gene_name=TSPY3;ID=intron:HG003_chrY_T0000271:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9143297	9143389	.	+	.	source_transcript=hg002_chrY_paternal_176.4;source_transcript_name=hg002_chrY_paternal_176.1;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_176.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.4,hg002_chrY_paternal_176.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000271;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000271;transcript_name=hg002_chrY_paternal_176.1;gene_name=TSPY3;ID=exon:HG003_chrY_T0000271:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9143390	9144083	.	+	.	source_transcript=hg002_chrY_paternal_176.4;source_transcript_name=hg002_chrY_paternal_176.1;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_176.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.4,hg002_chrY_paternal_176.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000271;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000271;transcript_name=hg002_chrY_paternal_176.1;gene_name=TSPY3;ID=intron:HG003_chrY_T0000271:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9144084	9144294	.	+	.	source_transcript=hg002_chrY_paternal_176.4;source_transcript_name=hg002_chrY_paternal_176.1;source_gene=hg002_chrY_paternal_176;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_176;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_176.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_176.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_176.4,hg002_chrY_paternal_176.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000271;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000271;transcript_name=hg002_chrY_paternal_176.1;gene_name=TSPY3;ID=exon:HG003_chrY_T0000271:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9153558	9159163	.	-	.	source_gene_common_name=FAM197Y3;source_gene=hg002_chrY_paternal_177;alternative_source_transcripts=hg002_chrY_paternal_177.1,hg002_chrY_paternal_177.1;gene_id=HG003_chrY_G0000103;gene_biotype=lncRNA;gene_name=FAM197Y3;gene_sources=liftoff;ID=HG003_chrY_G0000103;Name=FAM197Y3
HG003_chrY	CAT	transcript	9153558	9159163	1000	-	.	source_transcript=hg002_chrY_paternal_177.1;source_transcript_name=hg002_chrY_paternal_177.1;source_gene=hg002_chrY_paternal_177;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_177;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_177.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_177.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_177.1,hg002_chrY_paternal_177.1;transcript_id=HG003_chrY_T0000272;gene_id=HG003_chrY_G0000103;Parent=HG003_chrY_G0000103;transcript_name=hg002_chrY_paternal_177.1;gene_name=FAM197Y3;ID=HG003_chrY_T0000272;Name=FAM197Y3
HG003_chrY	CAT	exon	9153558	9153617	.	-	.	source_transcript=hg002_chrY_paternal_177.1;source_transcript_name=hg002_chrY_paternal_177.1;source_gene=hg002_chrY_paternal_177;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_177;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_177.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_177.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_177.1,hg002_chrY_paternal_177.1;transcript_id=HG003_chrY_T0000272;gene_id=HG003_chrY_G0000103;Parent=HG003_chrY_T0000272;transcript_name=hg002_chrY_paternal_177.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000272:0;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9153618	9157168	.	-	.	source_transcript=hg002_chrY_paternal_177.1;source_transcript_name=hg002_chrY_paternal_177.1;source_gene=hg002_chrY_paternal_177;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_177;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_177.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_177.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_177.1,hg002_chrY_paternal_177.1;transcript_id=HG003_chrY_T0000272;gene_id=HG003_chrY_G0000103;Parent=HG003_chrY_T0000272;transcript_name=hg002_chrY_paternal_177.1;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000272:0;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9157169	9157327	.	-	.	source_transcript=hg002_chrY_paternal_177.1;source_transcript_name=hg002_chrY_paternal_177.1;source_gene=hg002_chrY_paternal_177;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_177;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_177.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_177.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_177.1,hg002_chrY_paternal_177.1;transcript_id=HG003_chrY_T0000272;gene_id=HG003_chrY_G0000103;Parent=HG003_chrY_T0000272;transcript_name=hg002_chrY_paternal_177.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000272:1;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9157328	9158829	.	-	.	source_transcript=hg002_chrY_paternal_177.1;source_transcript_name=hg002_chrY_paternal_177.1;source_gene=hg002_chrY_paternal_177;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_177;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_177.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_177.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_177.1,hg002_chrY_paternal_177.1;transcript_id=HG003_chrY_T0000272;gene_id=HG003_chrY_G0000103;Parent=HG003_chrY_T0000272;transcript_name=hg002_chrY_paternal_177.1;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000272:1;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9158830	9158975	.	-	.	source_transcript=hg002_chrY_paternal_177.1;source_transcript_name=hg002_chrY_paternal_177.1;source_gene=hg002_chrY_paternal_177;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_177;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_177.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_177.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_177.1,hg002_chrY_paternal_177.1;transcript_id=HG003_chrY_T0000272;gene_id=HG003_chrY_G0000103;Parent=HG003_chrY_T0000272;transcript_name=hg002_chrY_paternal_177.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000272:2;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9158976	9159061	.	-	.	source_transcript=hg002_chrY_paternal_177.1;source_transcript_name=hg002_chrY_paternal_177.1;source_gene=hg002_chrY_paternal_177;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_177;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_177.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_177.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_177.1,hg002_chrY_paternal_177.1;transcript_id=HG003_chrY_T0000272;gene_id=HG003_chrY_G0000103;Parent=HG003_chrY_T0000272;transcript_name=hg002_chrY_paternal_177.1;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000272:2;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9159062	9159163	.	-	.	source_transcript=hg002_chrY_paternal_177.1;source_transcript_name=hg002_chrY_paternal_177.1;source_gene=hg002_chrY_paternal_177;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_177;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_177.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_177.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_177.1,hg002_chrY_paternal_177.1;transcript_id=HG003_chrY_T0000272;gene_id=HG003_chrY_G0000103;Parent=HG003_chrY_T0000272;transcript_name=hg002_chrY_paternal_177.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000272:3;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9161776	9164572	.	+	.	source_gene_common_name=TSPY10;source_gene=hg002_chrY_paternal_178;alternative_source_transcripts=hg002_chrY_paternal_178.1,hg002_chrY_paternal_178.1;gene_id=HG003_chrY_G0000104;gene_biotype=protein_coding;gene_name=TSPY10;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000104;Name=TSPY10
HG003_chrY	CAT	transcript	9161776	9164572	100	+	.	source_transcript=hg002_chrY_paternal_178.1;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.1,hg002_chrY_paternal_178.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000273;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_G0000104;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=HG003_chrY_T0000273;Name=TSPY10
HG003_chrY	CAT	exon	9161776	9162307	.	+	.	source_transcript=hg002_chrY_paternal_178.1;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.1,hg002_chrY_paternal_178.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000273;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000273;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000273:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9161822	9162307	.	+	0	source_transcript=hg002_chrY_paternal_178.1;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.1,hg002_chrY_paternal_178.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000273;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000273;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000273:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9161822	9161824	.	+	0	source_transcript=hg002_chrY_paternal_178.1;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.1,hg002_chrY_paternal_178.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000273;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000273;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000273;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9162308	9162914	.	+	.	source_transcript=hg002_chrY_paternal_178.1;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.1,hg002_chrY_paternal_178.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000273;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000273;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000273:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9162915	9162992	.	+	.	source_transcript=hg002_chrY_paternal_178.1;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.1,hg002_chrY_paternal_178.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000273;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000273;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000273:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9162915	9162992	.	+	0	source_transcript=hg002_chrY_paternal_178.1;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.1,hg002_chrY_paternal_178.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000273;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000273;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000273:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9162993	9163120	.	+	.	source_transcript=hg002_chrY_paternal_178.1;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.1,hg002_chrY_paternal_178.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000273;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000273;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000273:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9163121	9163232	.	+	.	source_transcript=hg002_chrY_paternal_178.1;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.1,hg002_chrY_paternal_178.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000273;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000273;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000273:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9163121	9163232	.	+	0	source_transcript=hg002_chrY_paternal_178.1;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.1,hg002_chrY_paternal_178.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000273;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000273;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000273:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9163233	9163333	.	+	.	source_transcript=hg002_chrY_paternal_178.1;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.1,hg002_chrY_paternal_178.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000273;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000273;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000273:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9163334	9163479	.	+	.	source_transcript=hg002_chrY_paternal_178.1;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.1,hg002_chrY_paternal_178.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000273;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000273;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000273:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9163334	9163479	.	+	2	source_transcript=hg002_chrY_paternal_178.1;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.1,hg002_chrY_paternal_178.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000273;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000273;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000273:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9163480	9163585	.	+	.	source_transcript=hg002_chrY_paternal_178.1;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.1,hg002_chrY_paternal_178.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000273;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000273;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000273:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9163586	9163667	.	+	.	source_transcript=hg002_chrY_paternal_178.1;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.1,hg002_chrY_paternal_178.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000273;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000273;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000273:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9163586	9163667	.	+	0	source_transcript=hg002_chrY_paternal_178.1;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.1,hg002_chrY_paternal_178.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000273;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000273;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000273:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9163668	9164361	.	+	.	source_transcript=hg002_chrY_paternal_178.1;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.1,hg002_chrY_paternal_178.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000273;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000273;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000273:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9164362	9164572	.	+	.	source_transcript=hg002_chrY_paternal_178.1;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.1,hg002_chrY_paternal_178.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000273;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000273;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000273:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9164362	9164384	.	+	2	source_transcript=hg002_chrY_paternal_178.1;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.1,hg002_chrY_paternal_178.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000273;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000273;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000273:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9164382	9164384	.	+	0	source_transcript=hg002_chrY_paternal_178.1;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.1,hg002_chrY_paternal_178.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000273;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000273;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000273;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9161776	9164572	100	+	.	source_transcript=hg002_chrY_paternal_178.2;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.2,hg002_chrY_paternal_178.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_G0000104;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=HG003_chrY_T0000274;Name=TSPY10
HG003_chrY	CAT	exon	9161776	9162307	.	+	.	source_transcript=hg002_chrY_paternal_178.2;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.2,hg002_chrY_paternal_178.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000274;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000274:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9161822	9162307	.	+	0	source_transcript=hg002_chrY_paternal_178.2;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.2,hg002_chrY_paternal_178.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000274;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000274:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9161822	9161824	.	+	0	source_transcript=hg002_chrY_paternal_178.2;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.2,hg002_chrY_paternal_178.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000274;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000274;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9162308	9162914	.	+	.	source_transcript=hg002_chrY_paternal_178.2;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.2,hg002_chrY_paternal_178.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000274;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000274:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9162915	9162992	.	+	.	source_transcript=hg002_chrY_paternal_178.2;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.2,hg002_chrY_paternal_178.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000274;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000274:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9162915	9162992	.	+	0	source_transcript=hg002_chrY_paternal_178.2;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.2,hg002_chrY_paternal_178.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000274;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000274:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9162993	9163120	.	+	.	source_transcript=hg002_chrY_paternal_178.2;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.2,hg002_chrY_paternal_178.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000274;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000274:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9163121	9163232	.	+	.	source_transcript=hg002_chrY_paternal_178.2;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.2,hg002_chrY_paternal_178.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000274;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000274:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9163121	9163232	.	+	0	source_transcript=hg002_chrY_paternal_178.2;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.2,hg002_chrY_paternal_178.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000274;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000274:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9163233	9163333	.	+	.	source_transcript=hg002_chrY_paternal_178.2;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.2,hg002_chrY_paternal_178.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000274;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000274:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9163334	9163479	.	+	.	source_transcript=hg002_chrY_paternal_178.2;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.2,hg002_chrY_paternal_178.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000274;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000274:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9163334	9163479	.	+	2	source_transcript=hg002_chrY_paternal_178.2;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.2,hg002_chrY_paternal_178.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000274;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000274:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9163480	9163574	.	+	.	source_transcript=hg002_chrY_paternal_178.2;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.2,hg002_chrY_paternal_178.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000274;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000274:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9163575	9163667	.	+	.	source_transcript=hg002_chrY_paternal_178.2;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.2,hg002_chrY_paternal_178.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000274;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000274:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9163575	9163637	.	+	0	source_transcript=hg002_chrY_paternal_178.2;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.2,hg002_chrY_paternal_178.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000274;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000274:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9163635	9163637	.	+	0	source_transcript=hg002_chrY_paternal_178.2;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.2,hg002_chrY_paternal_178.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000274;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000274;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9163668	9164361	.	+	.	source_transcript=hg002_chrY_paternal_178.2;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.2,hg002_chrY_paternal_178.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000274;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000274:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9164362	9164572	.	+	.	source_transcript=hg002_chrY_paternal_178.2;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.2,hg002_chrY_paternal_178.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000274;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000274:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9161776	9164572	100	+	.	source_transcript=hg002_chrY_paternal_178.3;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.3,hg002_chrY_paternal_178.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_G0000104;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=HG003_chrY_T0000275;Name=TSPY10
HG003_chrY	CAT	exon	9161776	9162307	.	+	.	source_transcript=hg002_chrY_paternal_178.3;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.3,hg002_chrY_paternal_178.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000275;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000275:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9161822	9162307	.	+	0	source_transcript=hg002_chrY_paternal_178.3;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.3,hg002_chrY_paternal_178.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000275;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000275:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9161822	9161824	.	+	0	source_transcript=hg002_chrY_paternal_178.3;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.3,hg002_chrY_paternal_178.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000275;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000275;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9162308	9162914	.	+	.	source_transcript=hg002_chrY_paternal_178.3;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.3,hg002_chrY_paternal_178.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000275;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000275:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9162915	9162992	.	+	.	source_transcript=hg002_chrY_paternal_178.3;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.3,hg002_chrY_paternal_178.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000275;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000275:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9162915	9162992	.	+	0	source_transcript=hg002_chrY_paternal_178.3;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.3,hg002_chrY_paternal_178.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000275;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000275:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9162993	9163120	.	+	.	source_transcript=hg002_chrY_paternal_178.3;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.3,hg002_chrY_paternal_178.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000275;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000275:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9163121	9163232	.	+	.	source_transcript=hg002_chrY_paternal_178.3;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.3,hg002_chrY_paternal_178.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000275;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000275:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9163121	9163232	.	+	0	source_transcript=hg002_chrY_paternal_178.3;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.3,hg002_chrY_paternal_178.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000275;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000275:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9163233	9163340	.	+	.	source_transcript=hg002_chrY_paternal_178.3;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.3,hg002_chrY_paternal_178.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000275;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000275:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9163341	9163479	.	+	.	source_transcript=hg002_chrY_paternal_178.3;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.3,hg002_chrY_paternal_178.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000275;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000275:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9163341	9163479	.	+	2	source_transcript=hg002_chrY_paternal_178.3;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.3,hg002_chrY_paternal_178.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000275;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000275:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9163480	9163585	.	+	.	source_transcript=hg002_chrY_paternal_178.3;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.3,hg002_chrY_paternal_178.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000275;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000275:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9163586	9163667	.	+	.	source_transcript=hg002_chrY_paternal_178.3;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.3,hg002_chrY_paternal_178.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000275;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000275:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9163586	9163637	.	+	1	source_transcript=hg002_chrY_paternal_178.3;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.3,hg002_chrY_paternal_178.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000275;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000275:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9163635	9163637	.	+	0	source_transcript=hg002_chrY_paternal_178.3;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.3,hg002_chrY_paternal_178.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000275;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000275;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9163668	9164361	.	+	.	source_transcript=hg002_chrY_paternal_178.3;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.3,hg002_chrY_paternal_178.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000275;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000275:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9164362	9164572	.	+	.	source_transcript=hg002_chrY_paternal_178.3;source_transcript_name=hg002_chrY_paternal_178.4;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_178.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.3,hg002_chrY_paternal_178.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000275;transcript_name=hg002_chrY_paternal_178.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000275:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9161776	9164572	1000	+	.	source_transcript=hg002_chrY_paternal_178.4;source_transcript_name=hg002_chrY_paternal_178.1;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_178.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.4,hg002_chrY_paternal_178.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000276;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_G0000104;transcript_name=hg002_chrY_paternal_178.1;gene_name=TSPY10;ID=HG003_chrY_T0000276;Name=TSPY10
HG003_chrY	CAT	exon	9161776	9162307	.	+	.	source_transcript=hg002_chrY_paternal_178.4;source_transcript_name=hg002_chrY_paternal_178.1;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_178.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.4,hg002_chrY_paternal_178.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000276;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000276;transcript_name=hg002_chrY_paternal_178.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000276:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9162308	9162914	.	+	.	source_transcript=hg002_chrY_paternal_178.4;source_transcript_name=hg002_chrY_paternal_178.1;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_178.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.4,hg002_chrY_paternal_178.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000276;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000276;transcript_name=hg002_chrY_paternal_178.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000276:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9162915	9162992	.	+	.	source_transcript=hg002_chrY_paternal_178.4;source_transcript_name=hg002_chrY_paternal_178.1;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_178.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.4,hg002_chrY_paternal_178.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000276;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000276;transcript_name=hg002_chrY_paternal_178.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000276:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9162993	9163120	.	+	.	source_transcript=hg002_chrY_paternal_178.4;source_transcript_name=hg002_chrY_paternal_178.1;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_178.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.4,hg002_chrY_paternal_178.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000276;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000276;transcript_name=hg002_chrY_paternal_178.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000276:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9163121	9163232	.	+	.	source_transcript=hg002_chrY_paternal_178.4;source_transcript_name=hg002_chrY_paternal_178.1;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_178.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.4,hg002_chrY_paternal_178.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000276;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000276;transcript_name=hg002_chrY_paternal_178.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000276:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9163233	9163340	.	+	.	source_transcript=hg002_chrY_paternal_178.4;source_transcript_name=hg002_chrY_paternal_178.1;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_178.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.4,hg002_chrY_paternal_178.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000276;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000276;transcript_name=hg002_chrY_paternal_178.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000276:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9163341	9163479	.	+	.	source_transcript=hg002_chrY_paternal_178.4;source_transcript_name=hg002_chrY_paternal_178.1;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_178.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.4,hg002_chrY_paternal_178.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000276;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000276;transcript_name=hg002_chrY_paternal_178.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000276:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9163480	9163574	.	+	.	source_transcript=hg002_chrY_paternal_178.4;source_transcript_name=hg002_chrY_paternal_178.1;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_178.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.4,hg002_chrY_paternal_178.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000276;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000276;transcript_name=hg002_chrY_paternal_178.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000276:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9163575	9163667	.	+	.	source_transcript=hg002_chrY_paternal_178.4;source_transcript_name=hg002_chrY_paternal_178.1;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_178.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.4,hg002_chrY_paternal_178.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000276;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000276;transcript_name=hg002_chrY_paternal_178.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000276:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9163668	9164361	.	+	.	source_transcript=hg002_chrY_paternal_178.4;source_transcript_name=hg002_chrY_paternal_178.1;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_178.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.4,hg002_chrY_paternal_178.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000276;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000276;transcript_name=hg002_chrY_paternal_178.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000276:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9164362	9164572	.	+	.	source_transcript=hg002_chrY_paternal_178.4;source_transcript_name=hg002_chrY_paternal_178.1;source_gene=hg002_chrY_paternal_178;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_178;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_178.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_178.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_178.4,hg002_chrY_paternal_178.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000276;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000276;transcript_name=hg002_chrY_paternal_178.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000276:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9173844	9179444	.	-	.	source_gene_common_name=FAM197Y3;source_gene=hg002_chrY_paternal_179;alternative_source_transcripts=hg002_chrY_paternal_179.1,hg002_chrY_paternal_179.1;gene_id=HG003_chrY_G0000105;gene_biotype=lncRNA;gene_name=FAM197Y3;gene_sources=liftoff;ID=HG003_chrY_G0000105;Name=FAM197Y3
HG003_chrY	CAT	transcript	9173844	9179444	1000	-	.	source_transcript=hg002_chrY_paternal_179.1;source_transcript_name=hg002_chrY_paternal_179.1;source_gene=hg002_chrY_paternal_179;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_179;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_179.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_179.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_179.1,hg002_chrY_paternal_179.1;transcript_id=HG003_chrY_T0000277;gene_id=HG003_chrY_G0000105;Parent=HG003_chrY_G0000105;transcript_name=hg002_chrY_paternal_179.1;gene_name=FAM197Y3;ID=HG003_chrY_T0000277;Name=FAM197Y3
HG003_chrY	CAT	exon	9173844	9173903	.	-	.	source_transcript=hg002_chrY_paternal_179.1;source_transcript_name=hg002_chrY_paternal_179.1;source_gene=hg002_chrY_paternal_179;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_179;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_179.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_179.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_179.1,hg002_chrY_paternal_179.1;transcript_id=HG003_chrY_T0000277;gene_id=HG003_chrY_G0000105;Parent=HG003_chrY_T0000277;transcript_name=hg002_chrY_paternal_179.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000277:0;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9173904	9177451	.	-	.	source_transcript=hg002_chrY_paternal_179.1;source_transcript_name=hg002_chrY_paternal_179.1;source_gene=hg002_chrY_paternal_179;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_179;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_179.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_179.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_179.1,hg002_chrY_paternal_179.1;transcript_id=HG003_chrY_T0000277;gene_id=HG003_chrY_G0000105;Parent=HG003_chrY_T0000277;transcript_name=hg002_chrY_paternal_179.1;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000277:0;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9177452	9177610	.	-	.	source_transcript=hg002_chrY_paternal_179.1;source_transcript_name=hg002_chrY_paternal_179.1;source_gene=hg002_chrY_paternal_179;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_179;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_179.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_179.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_179.1,hg002_chrY_paternal_179.1;transcript_id=HG003_chrY_T0000277;gene_id=HG003_chrY_G0000105;Parent=HG003_chrY_T0000277;transcript_name=hg002_chrY_paternal_179.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000277:1;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9177611	9179110	.	-	.	source_transcript=hg002_chrY_paternal_179.1;source_transcript_name=hg002_chrY_paternal_179.1;source_gene=hg002_chrY_paternal_179;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_179;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_179.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_179.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_179.1,hg002_chrY_paternal_179.1;transcript_id=HG003_chrY_T0000277;gene_id=HG003_chrY_G0000105;Parent=HG003_chrY_T0000277;transcript_name=hg002_chrY_paternal_179.1;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000277:1;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9179111	9179256	.	-	.	source_transcript=hg002_chrY_paternal_179.1;source_transcript_name=hg002_chrY_paternal_179.1;source_gene=hg002_chrY_paternal_179;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_179;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_179.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_179.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_179.1,hg002_chrY_paternal_179.1;transcript_id=HG003_chrY_T0000277;gene_id=HG003_chrY_G0000105;Parent=HG003_chrY_T0000277;transcript_name=hg002_chrY_paternal_179.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000277:2;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9179257	9179342	.	-	.	source_transcript=hg002_chrY_paternal_179.1;source_transcript_name=hg002_chrY_paternal_179.1;source_gene=hg002_chrY_paternal_179;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_179;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_179.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_179.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_179.1,hg002_chrY_paternal_179.1;transcript_id=HG003_chrY_T0000277;gene_id=HG003_chrY_G0000105;Parent=HG003_chrY_T0000277;transcript_name=hg002_chrY_paternal_179.1;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000277:2;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9179343	9179444	.	-	.	source_transcript=hg002_chrY_paternal_179.1;source_transcript_name=hg002_chrY_paternal_179.1;source_gene=hg002_chrY_paternal_179;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_179;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_179.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_179.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_179.1,hg002_chrY_paternal_179.1;transcript_id=HG003_chrY_T0000277;gene_id=HG003_chrY_G0000105;Parent=HG003_chrY_T0000277;transcript_name=hg002_chrY_paternal_179.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000277:3;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9182053	9184849	.	+	.	source_gene_common_name=TSPY10;source_gene=hg002_chrY_paternal_180;alternative_source_transcripts=hg002_chrY_paternal_180.1,hg002_chrY_paternal_180.1;gene_id=HG003_chrY_G0000106;gene_biotype=protein_coding;gene_name=TSPY10;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000106;Name=TSPY10
HG003_chrY	CAT	transcript	9182053	9184849	100	+	.	source_transcript=hg002_chrY_paternal_180.1;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.1,hg002_chrY_paternal_180.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_G0000106;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=HG003_chrY_T0000278;Name=TSPY10
HG003_chrY	CAT	exon	9182053	9182584	.	+	.	source_transcript=hg002_chrY_paternal_180.1;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.1,hg002_chrY_paternal_180.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000278;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000278:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9182099	9182584	.	+	0	source_transcript=hg002_chrY_paternal_180.1;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.1,hg002_chrY_paternal_180.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000278;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000278:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9182099	9182101	.	+	0	source_transcript=hg002_chrY_paternal_180.1;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.1,hg002_chrY_paternal_180.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000278;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000278;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9182585	9183191	.	+	.	source_transcript=hg002_chrY_paternal_180.1;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.1,hg002_chrY_paternal_180.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000278;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000278:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9183192	9183269	.	+	.	source_transcript=hg002_chrY_paternal_180.1;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.1,hg002_chrY_paternal_180.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000278;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000278:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9183192	9183269	.	+	0	source_transcript=hg002_chrY_paternal_180.1;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.1,hg002_chrY_paternal_180.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000278;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000278:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9183270	9183397	.	+	.	source_transcript=hg002_chrY_paternal_180.1;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.1,hg002_chrY_paternal_180.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000278;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000278:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9183398	9183509	.	+	.	source_transcript=hg002_chrY_paternal_180.1;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.1,hg002_chrY_paternal_180.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000278;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000278:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9183398	9183509	.	+	0	source_transcript=hg002_chrY_paternal_180.1;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.1,hg002_chrY_paternal_180.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000278;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000278:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9183510	9183610	.	+	.	source_transcript=hg002_chrY_paternal_180.1;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.1,hg002_chrY_paternal_180.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000278;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000278:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9183611	9183756	.	+	.	source_transcript=hg002_chrY_paternal_180.1;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.1,hg002_chrY_paternal_180.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000278;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000278:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9183611	9183756	.	+	2	source_transcript=hg002_chrY_paternal_180.1;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.1,hg002_chrY_paternal_180.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000278;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000278:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9183757	9183862	.	+	.	source_transcript=hg002_chrY_paternal_180.1;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.1,hg002_chrY_paternal_180.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000278;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000278:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9183863	9183944	.	+	.	source_transcript=hg002_chrY_paternal_180.1;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.1,hg002_chrY_paternal_180.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000278;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000278:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9183863	9183944	.	+	0	source_transcript=hg002_chrY_paternal_180.1;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.1,hg002_chrY_paternal_180.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000278;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000278:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9183945	9184638	.	+	.	source_transcript=hg002_chrY_paternal_180.1;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.1,hg002_chrY_paternal_180.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000278;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000278:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9184639	9184849	.	+	.	source_transcript=hg002_chrY_paternal_180.1;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.1,hg002_chrY_paternal_180.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000278;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000278:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9184639	9184661	.	+	2	source_transcript=hg002_chrY_paternal_180.1;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.1,hg002_chrY_paternal_180.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000278;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000278:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9184659	9184661	.	+	0	source_transcript=hg002_chrY_paternal_180.1;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.1,hg002_chrY_paternal_180.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000278;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000278;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9182053	9184849	100	+	.	source_transcript=hg002_chrY_paternal_180.2;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.2,hg002_chrY_paternal_180.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000279;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_G0000106;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=HG003_chrY_T0000279;Name=TSPY10
HG003_chrY	CAT	exon	9182053	9182584	.	+	.	source_transcript=hg002_chrY_paternal_180.2;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.2,hg002_chrY_paternal_180.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000279;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000279;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000279:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9182099	9182584	.	+	0	source_transcript=hg002_chrY_paternal_180.2;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.2,hg002_chrY_paternal_180.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000279;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000279;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000279:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9182099	9182101	.	+	0	source_transcript=hg002_chrY_paternal_180.2;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.2,hg002_chrY_paternal_180.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000279;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000279;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000279;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9182585	9183191	.	+	.	source_transcript=hg002_chrY_paternal_180.2;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.2,hg002_chrY_paternal_180.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000279;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000279;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000279:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9183192	9183269	.	+	.	source_transcript=hg002_chrY_paternal_180.2;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.2,hg002_chrY_paternal_180.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000279;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000279;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000279:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9183192	9183269	.	+	0	source_transcript=hg002_chrY_paternal_180.2;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.2,hg002_chrY_paternal_180.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000279;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000279;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000279:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9183270	9183397	.	+	.	source_transcript=hg002_chrY_paternal_180.2;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.2,hg002_chrY_paternal_180.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000279;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000279;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000279:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9183398	9183509	.	+	.	source_transcript=hg002_chrY_paternal_180.2;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.2,hg002_chrY_paternal_180.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000279;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000279;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000279:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9183398	9183509	.	+	0	source_transcript=hg002_chrY_paternal_180.2;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.2,hg002_chrY_paternal_180.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000279;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000279;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000279:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9183510	9183610	.	+	.	source_transcript=hg002_chrY_paternal_180.2;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.2,hg002_chrY_paternal_180.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000279;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000279;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000279:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9183611	9183756	.	+	.	source_transcript=hg002_chrY_paternal_180.2;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.2,hg002_chrY_paternal_180.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000279;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000279;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000279:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9183611	9183756	.	+	2	source_transcript=hg002_chrY_paternal_180.2;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.2,hg002_chrY_paternal_180.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000279;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000279;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000279:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9183757	9183851	.	+	.	source_transcript=hg002_chrY_paternal_180.2;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.2,hg002_chrY_paternal_180.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000279;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000279;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000279:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9183852	9183944	.	+	.	source_transcript=hg002_chrY_paternal_180.2;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.2,hg002_chrY_paternal_180.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000279;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000279;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000279:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9183852	9183914	.	+	0	source_transcript=hg002_chrY_paternal_180.2;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.2,hg002_chrY_paternal_180.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000279;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000279;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000279:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9183912	9183914	.	+	0	source_transcript=hg002_chrY_paternal_180.2;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.2,hg002_chrY_paternal_180.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000279;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000279;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000279;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9183945	9184638	.	+	.	source_transcript=hg002_chrY_paternal_180.2;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.2,hg002_chrY_paternal_180.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000279;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000279;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000279:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9184639	9184849	.	+	.	source_transcript=hg002_chrY_paternal_180.2;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.2,hg002_chrY_paternal_180.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000279;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000279;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000279:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9182053	9184849	100	+	.	source_transcript=hg002_chrY_paternal_180.3;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.3,hg002_chrY_paternal_180.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_G0000106;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=HG003_chrY_T0000280;Name=TSPY10
HG003_chrY	CAT	exon	9182053	9182584	.	+	.	source_transcript=hg002_chrY_paternal_180.3;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.3,hg002_chrY_paternal_180.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000280;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000280:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9182099	9182584	.	+	0	source_transcript=hg002_chrY_paternal_180.3;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.3,hg002_chrY_paternal_180.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000280;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000280:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9182099	9182101	.	+	0	source_transcript=hg002_chrY_paternal_180.3;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.3,hg002_chrY_paternal_180.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000280;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000280;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9182585	9183191	.	+	.	source_transcript=hg002_chrY_paternal_180.3;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.3,hg002_chrY_paternal_180.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000280;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000280:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9183192	9183269	.	+	.	source_transcript=hg002_chrY_paternal_180.3;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.3,hg002_chrY_paternal_180.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000280;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000280:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9183192	9183269	.	+	0	source_transcript=hg002_chrY_paternal_180.3;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.3,hg002_chrY_paternal_180.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000280;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000280:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9183270	9183397	.	+	.	source_transcript=hg002_chrY_paternal_180.3;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.3,hg002_chrY_paternal_180.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000280;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000280:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9183398	9183509	.	+	.	source_transcript=hg002_chrY_paternal_180.3;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.3,hg002_chrY_paternal_180.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000280;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000280:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9183398	9183509	.	+	0	source_transcript=hg002_chrY_paternal_180.3;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.3,hg002_chrY_paternal_180.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000280;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000280:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9183510	9183617	.	+	.	source_transcript=hg002_chrY_paternal_180.3;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.3,hg002_chrY_paternal_180.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000280;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000280:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9183618	9183756	.	+	.	source_transcript=hg002_chrY_paternal_180.3;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.3,hg002_chrY_paternal_180.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000280;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000280:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9183618	9183756	.	+	2	source_transcript=hg002_chrY_paternal_180.3;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.3,hg002_chrY_paternal_180.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000280;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000280:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9183757	9183862	.	+	.	source_transcript=hg002_chrY_paternal_180.3;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.3,hg002_chrY_paternal_180.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000280;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000280:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9183863	9183944	.	+	.	source_transcript=hg002_chrY_paternal_180.3;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.3,hg002_chrY_paternal_180.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000280;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000280:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9183863	9183914	.	+	1	source_transcript=hg002_chrY_paternal_180.3;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.3,hg002_chrY_paternal_180.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000280;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000280:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9183912	9183914	.	+	0	source_transcript=hg002_chrY_paternal_180.3;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.3,hg002_chrY_paternal_180.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000280;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000280;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9183945	9184638	.	+	.	source_transcript=hg002_chrY_paternal_180.3;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.3,hg002_chrY_paternal_180.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000280;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000280:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9184639	9184849	.	+	.	source_transcript=hg002_chrY_paternal_180.3;source_transcript_name=hg002_chrY_paternal_180.4;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_180.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.3,hg002_chrY_paternal_180.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000280;transcript_name=hg002_chrY_paternal_180.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000280:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9182053	9184849	1000	+	.	source_transcript=hg002_chrY_paternal_180.4;source_transcript_name=hg002_chrY_paternal_180.1;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_180.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.4,hg002_chrY_paternal_180.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000281;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_G0000106;transcript_name=hg002_chrY_paternal_180.1;gene_name=TSPY10;ID=HG003_chrY_T0000281;Name=TSPY10
HG003_chrY	CAT	exon	9182053	9182584	.	+	.	source_transcript=hg002_chrY_paternal_180.4;source_transcript_name=hg002_chrY_paternal_180.1;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_180.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.4,hg002_chrY_paternal_180.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000281;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000281;transcript_name=hg002_chrY_paternal_180.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000281:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9182585	9183191	.	+	.	source_transcript=hg002_chrY_paternal_180.4;source_transcript_name=hg002_chrY_paternal_180.1;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_180.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.4,hg002_chrY_paternal_180.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000281;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000281;transcript_name=hg002_chrY_paternal_180.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000281:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9183192	9183269	.	+	.	source_transcript=hg002_chrY_paternal_180.4;source_transcript_name=hg002_chrY_paternal_180.1;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_180.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.4,hg002_chrY_paternal_180.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000281;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000281;transcript_name=hg002_chrY_paternal_180.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000281:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9183270	9183397	.	+	.	source_transcript=hg002_chrY_paternal_180.4;source_transcript_name=hg002_chrY_paternal_180.1;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_180.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.4,hg002_chrY_paternal_180.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000281;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000281;transcript_name=hg002_chrY_paternal_180.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000281:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9183398	9183509	.	+	.	source_transcript=hg002_chrY_paternal_180.4;source_transcript_name=hg002_chrY_paternal_180.1;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_180.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.4,hg002_chrY_paternal_180.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000281;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000281;transcript_name=hg002_chrY_paternal_180.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000281:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9183510	9183617	.	+	.	source_transcript=hg002_chrY_paternal_180.4;source_transcript_name=hg002_chrY_paternal_180.1;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_180.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.4,hg002_chrY_paternal_180.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000281;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000281;transcript_name=hg002_chrY_paternal_180.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000281:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9183618	9183756	.	+	.	source_transcript=hg002_chrY_paternal_180.4;source_transcript_name=hg002_chrY_paternal_180.1;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_180.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.4,hg002_chrY_paternal_180.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000281;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000281;transcript_name=hg002_chrY_paternal_180.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000281:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9183757	9183851	.	+	.	source_transcript=hg002_chrY_paternal_180.4;source_transcript_name=hg002_chrY_paternal_180.1;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_180.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.4,hg002_chrY_paternal_180.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000281;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000281;transcript_name=hg002_chrY_paternal_180.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000281:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9183852	9183944	.	+	.	source_transcript=hg002_chrY_paternal_180.4;source_transcript_name=hg002_chrY_paternal_180.1;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_180.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.4,hg002_chrY_paternal_180.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000281;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000281;transcript_name=hg002_chrY_paternal_180.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000281:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9183945	9184638	.	+	.	source_transcript=hg002_chrY_paternal_180.4;source_transcript_name=hg002_chrY_paternal_180.1;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_180.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.4,hg002_chrY_paternal_180.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000281;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000281;transcript_name=hg002_chrY_paternal_180.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000281:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9184639	9184849	.	+	.	source_transcript=hg002_chrY_paternal_180.4;source_transcript_name=hg002_chrY_paternal_180.1;source_gene=hg002_chrY_paternal_180;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_180;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_180.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_180.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_180.4,hg002_chrY_paternal_180.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000281;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000281;transcript_name=hg002_chrY_paternal_180.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000281:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9194119	9199812	.	-	.	source_gene_common_name=FAM197Y2;source_gene=hg002_chrY_paternal_181;alternative_source_transcripts=hg002_chrY_paternal_181.1,hg002_chrY_paternal_181.1;gene_id=HG003_chrY_G0000107;gene_biotype=lncRNA;gene_name=FAM197Y2;gene_sources=liftoff;ID=HG003_chrY_G0000107;Name=FAM197Y2
HG003_chrY	CAT	transcript	9194119	9199812	1000	-	.	source_transcript=hg002_chrY_paternal_181.1;source_transcript_name=hg002_chrY_paternal_181.1;source_gene=hg002_chrY_paternal_181;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_181;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_181.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_181.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_181.1,hg002_chrY_paternal_181.1;transcript_id=HG003_chrY_T0000282;gene_id=HG003_chrY_G0000107;Parent=HG003_chrY_G0000107;transcript_name=hg002_chrY_paternal_181.1;gene_name=FAM197Y2;ID=HG003_chrY_T0000282;Name=FAM197Y2
HG003_chrY	CAT	exon	9194119	9194178	.	-	.	source_transcript=hg002_chrY_paternal_181.1;source_transcript_name=hg002_chrY_paternal_181.1;source_gene=hg002_chrY_paternal_181;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_181;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_181.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_181.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_181.1,hg002_chrY_paternal_181.1;transcript_id=HG003_chrY_T0000282;gene_id=HG003_chrY_G0000107;Parent=HG003_chrY_T0000282;transcript_name=hg002_chrY_paternal_181.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000282:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9194179	9197728	.	-	.	source_transcript=hg002_chrY_paternal_181.1;source_transcript_name=hg002_chrY_paternal_181.1;source_gene=hg002_chrY_paternal_181;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_181;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_181.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_181.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_181.1,hg002_chrY_paternal_181.1;transcript_id=HG003_chrY_T0000282;gene_id=HG003_chrY_G0000107;Parent=HG003_chrY_T0000282;transcript_name=hg002_chrY_paternal_181.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000282:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9197729	9197887	.	-	.	source_transcript=hg002_chrY_paternal_181.1;source_transcript_name=hg002_chrY_paternal_181.1;source_gene=hg002_chrY_paternal_181;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_181;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_181.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_181.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_181.1,hg002_chrY_paternal_181.1;transcript_id=HG003_chrY_T0000282;gene_id=HG003_chrY_G0000107;Parent=HG003_chrY_T0000282;transcript_name=hg002_chrY_paternal_181.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000282:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9197888	9199389	.	-	.	source_transcript=hg002_chrY_paternal_181.1;source_transcript_name=hg002_chrY_paternal_181.1;source_gene=hg002_chrY_paternal_181;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_181;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_181.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_181.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_181.1,hg002_chrY_paternal_181.1;transcript_id=HG003_chrY_T0000282;gene_id=HG003_chrY_G0000107;Parent=HG003_chrY_T0000282;transcript_name=hg002_chrY_paternal_181.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000282:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9199390	9199535	.	-	.	source_transcript=hg002_chrY_paternal_181.1;source_transcript_name=hg002_chrY_paternal_181.1;source_gene=hg002_chrY_paternal_181;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_181;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_181.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_181.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_181.1,hg002_chrY_paternal_181.1;transcript_id=HG003_chrY_T0000282;gene_id=HG003_chrY_G0000107;Parent=HG003_chrY_T0000282;transcript_name=hg002_chrY_paternal_181.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000282:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9199536	9199621	.	-	.	source_transcript=hg002_chrY_paternal_181.1;source_transcript_name=hg002_chrY_paternal_181.1;source_gene=hg002_chrY_paternal_181;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_181;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_181.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_181.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_181.1,hg002_chrY_paternal_181.1;transcript_id=HG003_chrY_T0000282;gene_id=HG003_chrY_G0000107;Parent=HG003_chrY_T0000282;transcript_name=hg002_chrY_paternal_181.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000282:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9199622	9199812	.	-	.	source_transcript=hg002_chrY_paternal_181.1;source_transcript_name=hg002_chrY_paternal_181.1;source_gene=hg002_chrY_paternal_181;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_181;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_181.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_181.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_181.1,hg002_chrY_paternal_181.1;transcript_id=HG003_chrY_T0000282;gene_id=HG003_chrY_G0000107;Parent=HG003_chrY_T0000282;transcript_name=hg002_chrY_paternal_181.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000282:3;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9202336	9205132	.	+	.	source_gene_common_name=TSPY10;source_gene=hg002_chrY_paternal_182;alternative_source_transcripts=hg002_chrY_paternal_182.1,hg002_chrY_paternal_182.1;gene_id=HG003_chrY_G0000108;gene_biotype=protein_coding;gene_name=TSPY10;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000108;Name=TSPY10
HG003_chrY	CAT	transcript	9202336	9205132	100	+	.	source_transcript=hg002_chrY_paternal_182.1;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.1,hg002_chrY_paternal_182.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000283;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_G0000108;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=HG003_chrY_T0000283;Name=TSPY10
HG003_chrY	CAT	exon	9202336	9202867	.	+	.	source_transcript=hg002_chrY_paternal_182.1;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.1,hg002_chrY_paternal_182.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000283;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000283;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000283:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9202382	9202867	.	+	0	source_transcript=hg002_chrY_paternal_182.1;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.1,hg002_chrY_paternal_182.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000283;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000283;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000283:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9202382	9202384	.	+	0	source_transcript=hg002_chrY_paternal_182.1;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.1,hg002_chrY_paternal_182.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000283;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000283;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000283;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9202868	9203474	.	+	.	source_transcript=hg002_chrY_paternal_182.1;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.1,hg002_chrY_paternal_182.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000283;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000283;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000283:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9203475	9203552	.	+	.	source_transcript=hg002_chrY_paternal_182.1;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.1,hg002_chrY_paternal_182.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000283;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000283;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000283:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9203475	9203552	.	+	0	source_transcript=hg002_chrY_paternal_182.1;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.1,hg002_chrY_paternal_182.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000283;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000283;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000283:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9203553	9203680	.	+	.	source_transcript=hg002_chrY_paternal_182.1;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.1,hg002_chrY_paternal_182.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000283;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000283;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000283:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9203681	9203792	.	+	.	source_transcript=hg002_chrY_paternal_182.1;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.1,hg002_chrY_paternal_182.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000283;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000283;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000283:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9203681	9203792	.	+	0	source_transcript=hg002_chrY_paternal_182.1;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.1,hg002_chrY_paternal_182.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000283;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000283;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000283:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9203793	9203893	.	+	.	source_transcript=hg002_chrY_paternal_182.1;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.1,hg002_chrY_paternal_182.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000283;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000283;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000283:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9203894	9204039	.	+	.	source_transcript=hg002_chrY_paternal_182.1;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.1,hg002_chrY_paternal_182.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000283;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000283;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000283:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9203894	9204039	.	+	2	source_transcript=hg002_chrY_paternal_182.1;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.1,hg002_chrY_paternal_182.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000283;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000283;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000283:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9204040	9204145	.	+	.	source_transcript=hg002_chrY_paternal_182.1;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.1,hg002_chrY_paternal_182.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000283;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000283;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000283:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9204146	9204227	.	+	.	source_transcript=hg002_chrY_paternal_182.1;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.1,hg002_chrY_paternal_182.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000283;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000283;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000283:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9204146	9204227	.	+	0	source_transcript=hg002_chrY_paternal_182.1;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.1,hg002_chrY_paternal_182.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000283;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000283;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000283:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9204228	9204921	.	+	.	source_transcript=hg002_chrY_paternal_182.1;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.1,hg002_chrY_paternal_182.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000283;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000283;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000283:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9204922	9205132	.	+	.	source_transcript=hg002_chrY_paternal_182.1;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.1,hg002_chrY_paternal_182.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000283;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000283;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000283:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9204922	9204944	.	+	2	source_transcript=hg002_chrY_paternal_182.1;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.1,hg002_chrY_paternal_182.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000283;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000283;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000283:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9204942	9204944	.	+	0	source_transcript=hg002_chrY_paternal_182.1;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.1,hg002_chrY_paternal_182.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000283;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000283;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000283;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9202336	9205132	100	+	.	source_transcript=hg002_chrY_paternal_182.2;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.2,hg002_chrY_paternal_182.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_G0000108;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=HG003_chrY_T0000284;Name=TSPY10
HG003_chrY	CAT	exon	9202336	9202867	.	+	.	source_transcript=hg002_chrY_paternal_182.2;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.2,hg002_chrY_paternal_182.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000284;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000284:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9202382	9202867	.	+	0	source_transcript=hg002_chrY_paternal_182.2;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.2,hg002_chrY_paternal_182.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000284;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000284:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9202382	9202384	.	+	0	source_transcript=hg002_chrY_paternal_182.2;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.2,hg002_chrY_paternal_182.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000284;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000284;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9202868	9203474	.	+	.	source_transcript=hg002_chrY_paternal_182.2;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.2,hg002_chrY_paternal_182.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000284;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000284:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9203475	9203552	.	+	.	source_transcript=hg002_chrY_paternal_182.2;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.2,hg002_chrY_paternal_182.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000284;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000284:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9203475	9203552	.	+	0	source_transcript=hg002_chrY_paternal_182.2;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.2,hg002_chrY_paternal_182.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000284;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000284:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9203553	9203680	.	+	.	source_transcript=hg002_chrY_paternal_182.2;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.2,hg002_chrY_paternal_182.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000284;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000284:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9203681	9203792	.	+	.	source_transcript=hg002_chrY_paternal_182.2;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.2,hg002_chrY_paternal_182.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000284;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000284:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9203681	9203792	.	+	0	source_transcript=hg002_chrY_paternal_182.2;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.2,hg002_chrY_paternal_182.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000284;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000284:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9203793	9203893	.	+	.	source_transcript=hg002_chrY_paternal_182.2;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.2,hg002_chrY_paternal_182.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000284;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000284:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9203894	9204039	.	+	.	source_transcript=hg002_chrY_paternal_182.2;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.2,hg002_chrY_paternal_182.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000284;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000284:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9203894	9204039	.	+	2	source_transcript=hg002_chrY_paternal_182.2;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.2,hg002_chrY_paternal_182.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000284;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000284:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9204040	9204134	.	+	.	source_transcript=hg002_chrY_paternal_182.2;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.2,hg002_chrY_paternal_182.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000284;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000284:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9204135	9204227	.	+	.	source_transcript=hg002_chrY_paternal_182.2;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.2,hg002_chrY_paternal_182.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000284;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000284:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9204135	9204197	.	+	0	source_transcript=hg002_chrY_paternal_182.2;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.2,hg002_chrY_paternal_182.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000284;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000284:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9204195	9204197	.	+	0	source_transcript=hg002_chrY_paternal_182.2;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.2,hg002_chrY_paternal_182.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000284;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000284;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9204228	9204921	.	+	.	source_transcript=hg002_chrY_paternal_182.2;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.2,hg002_chrY_paternal_182.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000284;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000284:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9204922	9205132	.	+	.	source_transcript=hg002_chrY_paternal_182.2;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.2,hg002_chrY_paternal_182.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000284;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000284:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9202336	9205132	100	+	.	source_transcript=hg002_chrY_paternal_182.3;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.3,hg002_chrY_paternal_182.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000285;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_G0000108;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=HG003_chrY_T0000285;Name=TSPY10
HG003_chrY	CAT	exon	9202336	9202867	.	+	.	source_transcript=hg002_chrY_paternal_182.3;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.3,hg002_chrY_paternal_182.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000285;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000285;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000285:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9202382	9202867	.	+	0	source_transcript=hg002_chrY_paternal_182.3;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.3,hg002_chrY_paternal_182.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000285;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000285;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000285:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9202382	9202384	.	+	0	source_transcript=hg002_chrY_paternal_182.3;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.3,hg002_chrY_paternal_182.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000285;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000285;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000285;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9202868	9203474	.	+	.	source_transcript=hg002_chrY_paternal_182.3;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.3,hg002_chrY_paternal_182.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000285;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000285;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000285:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9203475	9203552	.	+	.	source_transcript=hg002_chrY_paternal_182.3;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.3,hg002_chrY_paternal_182.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000285;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000285;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000285:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9203475	9203552	.	+	0	source_transcript=hg002_chrY_paternal_182.3;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.3,hg002_chrY_paternal_182.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000285;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000285;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000285:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9203553	9203680	.	+	.	source_transcript=hg002_chrY_paternal_182.3;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.3,hg002_chrY_paternal_182.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000285;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000285;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000285:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9203681	9203792	.	+	.	source_transcript=hg002_chrY_paternal_182.3;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.3,hg002_chrY_paternal_182.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000285;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000285;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000285:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9203681	9203792	.	+	0	source_transcript=hg002_chrY_paternal_182.3;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.3,hg002_chrY_paternal_182.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000285;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000285;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000285:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9203793	9203900	.	+	.	source_transcript=hg002_chrY_paternal_182.3;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.3,hg002_chrY_paternal_182.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000285;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000285;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000285:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9203901	9204039	.	+	.	source_transcript=hg002_chrY_paternal_182.3;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.3,hg002_chrY_paternal_182.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000285;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000285;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000285:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9203901	9204039	.	+	2	source_transcript=hg002_chrY_paternal_182.3;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.3,hg002_chrY_paternal_182.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000285;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000285;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000285:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9204040	9204145	.	+	.	source_transcript=hg002_chrY_paternal_182.3;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.3,hg002_chrY_paternal_182.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000285;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000285;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000285:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9204146	9204227	.	+	.	source_transcript=hg002_chrY_paternal_182.3;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.3,hg002_chrY_paternal_182.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000285;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000285;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000285:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9204146	9204197	.	+	1	source_transcript=hg002_chrY_paternal_182.3;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.3,hg002_chrY_paternal_182.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000285;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000285;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000285:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9204195	9204197	.	+	0	source_transcript=hg002_chrY_paternal_182.3;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.3,hg002_chrY_paternal_182.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000285;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000285;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000285;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9204228	9204921	.	+	.	source_transcript=hg002_chrY_paternal_182.3;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.3,hg002_chrY_paternal_182.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000285;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000285;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000285:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9204922	9205132	.	+	.	source_transcript=hg002_chrY_paternal_182.3;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.3,hg002_chrY_paternal_182.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000285;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000285;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000285:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9202336	9205132	1000	+	.	source_transcript=hg002_chrY_paternal_182.4;source_transcript_name=hg002_chrY_paternal_182.1;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_182.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.4,hg002_chrY_paternal_182.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000286;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_G0000108;transcript_name=hg002_chrY_paternal_182.1;gene_name=TSPY10;ID=HG003_chrY_T0000286;Name=TSPY10
HG003_chrY	CAT	exon	9202336	9202867	.	+	.	source_transcript=hg002_chrY_paternal_182.4;source_transcript_name=hg002_chrY_paternal_182.1;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_182.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.4,hg002_chrY_paternal_182.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000286;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000286;transcript_name=hg002_chrY_paternal_182.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000286:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9202868	9203474	.	+	.	source_transcript=hg002_chrY_paternal_182.4;source_transcript_name=hg002_chrY_paternal_182.1;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_182.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.4,hg002_chrY_paternal_182.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000286;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000286;transcript_name=hg002_chrY_paternal_182.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000286:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9203475	9203552	.	+	.	source_transcript=hg002_chrY_paternal_182.4;source_transcript_name=hg002_chrY_paternal_182.1;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_182.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.4,hg002_chrY_paternal_182.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000286;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000286;transcript_name=hg002_chrY_paternal_182.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000286:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9203553	9203680	.	+	.	source_transcript=hg002_chrY_paternal_182.4;source_transcript_name=hg002_chrY_paternal_182.1;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_182.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.4,hg002_chrY_paternal_182.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000286;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000286;transcript_name=hg002_chrY_paternal_182.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000286:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9203681	9203792	.	+	.	source_transcript=hg002_chrY_paternal_182.4;source_transcript_name=hg002_chrY_paternal_182.1;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_182.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.4,hg002_chrY_paternal_182.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000286;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000286;transcript_name=hg002_chrY_paternal_182.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000286:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9203793	9203900	.	+	.	source_transcript=hg002_chrY_paternal_182.4;source_transcript_name=hg002_chrY_paternal_182.1;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_182.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.4,hg002_chrY_paternal_182.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000286;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000286;transcript_name=hg002_chrY_paternal_182.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000286:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9203901	9204039	.	+	.	source_transcript=hg002_chrY_paternal_182.4;source_transcript_name=hg002_chrY_paternal_182.1;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_182.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.4,hg002_chrY_paternal_182.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000286;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000286;transcript_name=hg002_chrY_paternal_182.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000286:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9204040	9204134	.	+	.	source_transcript=hg002_chrY_paternal_182.4;source_transcript_name=hg002_chrY_paternal_182.1;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_182.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.4,hg002_chrY_paternal_182.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000286;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000286;transcript_name=hg002_chrY_paternal_182.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000286:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9204135	9204227	.	+	.	source_transcript=hg002_chrY_paternal_182.4;source_transcript_name=hg002_chrY_paternal_182.1;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_182.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.4,hg002_chrY_paternal_182.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000286;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000286;transcript_name=hg002_chrY_paternal_182.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000286:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9204228	9204921	.	+	.	source_transcript=hg002_chrY_paternal_182.4;source_transcript_name=hg002_chrY_paternal_182.1;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_182.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.4,hg002_chrY_paternal_182.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000286;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000286;transcript_name=hg002_chrY_paternal_182.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000286:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9204922	9205132	.	+	.	source_transcript=hg002_chrY_paternal_182.4;source_transcript_name=hg002_chrY_paternal_182.1;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_182.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.4,hg002_chrY_paternal_182.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000286;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000286;transcript_name=hg002_chrY_paternal_182.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000286:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9214393	9220075	.	-	.	source_gene_common_name=FAM197Y2;source_gene=hg002_chrY_paternal_183;alternative_source_transcripts=hg002_chrY_paternal_183.1,hg002_chrY_paternal_183.1;gene_id=HG003_chrY_G0000109;gene_biotype=lncRNA;gene_name=FAM197Y2;gene_sources=liftoff;ID=HG003_chrY_G0000109;Name=FAM197Y2
HG003_chrY	CAT	transcript	9214393	9220075	1000	-	.	source_transcript=hg002_chrY_paternal_183.1;source_transcript_name=hg002_chrY_paternal_183.1;source_gene=hg002_chrY_paternal_183;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_183;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_183.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_183.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_183.1,hg002_chrY_paternal_183.1;transcript_id=HG003_chrY_T0000287;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_G0000109;transcript_name=hg002_chrY_paternal_183.1;gene_name=FAM197Y2;ID=HG003_chrY_T0000287;Name=FAM197Y2
HG003_chrY	CAT	exon	9214393	9214452	.	-	.	source_transcript=hg002_chrY_paternal_183.1;source_transcript_name=hg002_chrY_paternal_183.1;source_gene=hg002_chrY_paternal_183;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_183;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_183.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_183.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_183.1,hg002_chrY_paternal_183.1;transcript_id=HG003_chrY_T0000287;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_T0000287;transcript_name=hg002_chrY_paternal_183.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000287:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9214453	9218001	.	-	.	source_transcript=hg002_chrY_paternal_183.1;source_transcript_name=hg002_chrY_paternal_183.1;source_gene=hg002_chrY_paternal_183;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_183;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_183.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_183.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_183.1,hg002_chrY_paternal_183.1;transcript_id=HG003_chrY_T0000287;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_T0000287;transcript_name=hg002_chrY_paternal_183.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000287:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9218002	9218160	.	-	.	source_transcript=hg002_chrY_paternal_183.1;source_transcript_name=hg002_chrY_paternal_183.1;source_gene=hg002_chrY_paternal_183;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_183;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_183.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_183.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_183.1,hg002_chrY_paternal_183.1;transcript_id=HG003_chrY_T0000287;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_T0000287;transcript_name=hg002_chrY_paternal_183.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000287:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9218161	9219652	.	-	.	source_transcript=hg002_chrY_paternal_183.1;source_transcript_name=hg002_chrY_paternal_183.1;source_gene=hg002_chrY_paternal_183;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_183;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_183.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_183.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_183.1,hg002_chrY_paternal_183.1;transcript_id=HG003_chrY_T0000287;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_T0000287;transcript_name=hg002_chrY_paternal_183.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000287:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9219653	9219798	.	-	.	source_transcript=hg002_chrY_paternal_183.1;source_transcript_name=hg002_chrY_paternal_183.1;source_gene=hg002_chrY_paternal_183;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_183;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_183.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_183.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_183.1,hg002_chrY_paternal_183.1;transcript_id=HG003_chrY_T0000287;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_T0000287;transcript_name=hg002_chrY_paternal_183.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000287:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9219799	9219884	.	-	.	source_transcript=hg002_chrY_paternal_183.1;source_transcript_name=hg002_chrY_paternal_183.1;source_gene=hg002_chrY_paternal_183;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_183;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_183.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_183.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_183.1,hg002_chrY_paternal_183.1;transcript_id=HG003_chrY_T0000287;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_T0000287;transcript_name=hg002_chrY_paternal_183.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000287:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9219885	9220075	.	-	.	source_transcript=hg002_chrY_paternal_183.1;source_transcript_name=hg002_chrY_paternal_183.1;source_gene=hg002_chrY_paternal_183;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_183;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_183.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_183.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_183.1,hg002_chrY_paternal_183.1;transcript_id=HG003_chrY_T0000287;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_T0000287;transcript_name=hg002_chrY_paternal_183.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000287:3;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9222599	9225413	.	+	.	source_gene_common_name=TSPY4;source_gene=hg002_chrY_paternal_184;alternative_source_transcripts=hg002_chrY_paternal_184.1,hg002_chrY_paternal_184.1;gene_id=HG003_chrY_G0000110;gene_biotype=protein_coding;gene_name=TSPY4;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000110;Name=TSPY4
HG003_chrY	CAT	transcript	9222599	9225413	100	+	.	source_transcript=hg002_chrY_paternal_184.1;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.1,hg002_chrY_paternal_184.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000288;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_G0000110;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=HG003_chrY_T0000288;Name=TSPY4
HG003_chrY	CAT	exon	9222599	9223148	.	+	.	source_transcript=hg002_chrY_paternal_184.1;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.1,hg002_chrY_paternal_184.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000288;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000288;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000288:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9222645	9223148	.	+	0	source_transcript=hg002_chrY_paternal_184.1;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.1,hg002_chrY_paternal_184.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000288;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000288;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000288:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9222645	9222647	.	+	0	source_transcript=hg002_chrY_paternal_184.1;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.1,hg002_chrY_paternal_184.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000288;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000288;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=start_codon:HG003_chrY_T0000288;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9223149	9223755	.	+	.	source_transcript=hg002_chrY_paternal_184.1;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.1,hg002_chrY_paternal_184.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000288;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000288;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000288:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9223756	9223833	.	+	.	source_transcript=hg002_chrY_paternal_184.1;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.1,hg002_chrY_paternal_184.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000288;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000288;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000288:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9223756	9223833	.	+	0	source_transcript=hg002_chrY_paternal_184.1;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.1,hg002_chrY_paternal_184.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000288;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000288;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000288:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9223834	9223961	.	+	.	source_transcript=hg002_chrY_paternal_184.1;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.1,hg002_chrY_paternal_184.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000288;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000288;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000288:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9223962	9224073	.	+	.	source_transcript=hg002_chrY_paternal_184.1;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.1,hg002_chrY_paternal_184.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000288;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000288;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000288:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9223962	9224073	.	+	0	source_transcript=hg002_chrY_paternal_184.1;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.1,hg002_chrY_paternal_184.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000288;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000288;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000288:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9224074	9224174	.	+	.	source_transcript=hg002_chrY_paternal_184.1;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.1,hg002_chrY_paternal_184.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000288;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000288;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000288:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9224175	9224320	.	+	.	source_transcript=hg002_chrY_paternal_184.1;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.1,hg002_chrY_paternal_184.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000288;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000288;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000288:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9224175	9224320	.	+	2	source_transcript=hg002_chrY_paternal_184.1;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.1,hg002_chrY_paternal_184.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000288;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000288;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000288:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9224321	9224426	.	+	.	source_transcript=hg002_chrY_paternal_184.1;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.1,hg002_chrY_paternal_184.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000288;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000288;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000288:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9224427	9224508	.	+	.	source_transcript=hg002_chrY_paternal_184.1;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.1,hg002_chrY_paternal_184.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000288;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000288;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000288:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9224427	9224508	.	+	0	source_transcript=hg002_chrY_paternal_184.1;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.1,hg002_chrY_paternal_184.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000288;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000288;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000288:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9224509	9225202	.	+	.	source_transcript=hg002_chrY_paternal_184.1;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.1,hg002_chrY_paternal_184.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000288;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000288;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000288:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9225203	9225413	.	+	.	source_transcript=hg002_chrY_paternal_184.1;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.1,hg002_chrY_paternal_184.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000288;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000288;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000288:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9225203	9225225	.	+	2	source_transcript=hg002_chrY_paternal_184.1;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.1,hg002_chrY_paternal_184.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000288;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000288;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000288:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9225223	9225225	.	+	0	source_transcript=hg002_chrY_paternal_184.1;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.1,hg002_chrY_paternal_184.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000288;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000288;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=stop_codon:HG003_chrY_T0000288;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9222599	9225413	100	+	.	source_transcript=hg002_chrY_paternal_184.2;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.2,hg002_chrY_paternal_184.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000289;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_G0000110;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=HG003_chrY_T0000289;Name=TSPY4
HG003_chrY	CAT	exon	9222599	9223148	.	+	.	source_transcript=hg002_chrY_paternal_184.2;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.2,hg002_chrY_paternal_184.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000289;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000289;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000289:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9222645	9223148	.	+	0	source_transcript=hg002_chrY_paternal_184.2;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.2,hg002_chrY_paternal_184.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000289;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000289;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000289:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9222645	9222647	.	+	0	source_transcript=hg002_chrY_paternal_184.2;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.2,hg002_chrY_paternal_184.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000289;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000289;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=start_codon:HG003_chrY_T0000289;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9223149	9223755	.	+	.	source_transcript=hg002_chrY_paternal_184.2;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.2,hg002_chrY_paternal_184.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000289;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000289;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000289:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9223756	9223833	.	+	.	source_transcript=hg002_chrY_paternal_184.2;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.2,hg002_chrY_paternal_184.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000289;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000289;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000289:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9223756	9223833	.	+	0	source_transcript=hg002_chrY_paternal_184.2;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.2,hg002_chrY_paternal_184.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000289;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000289;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000289:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9223834	9223961	.	+	.	source_transcript=hg002_chrY_paternal_184.2;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.2,hg002_chrY_paternal_184.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000289;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000289;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000289:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9223962	9224073	.	+	.	source_transcript=hg002_chrY_paternal_184.2;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.2,hg002_chrY_paternal_184.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000289;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000289;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000289:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9223962	9224073	.	+	0	source_transcript=hg002_chrY_paternal_184.2;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.2,hg002_chrY_paternal_184.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000289;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000289;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000289:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9224074	9224174	.	+	.	source_transcript=hg002_chrY_paternal_184.2;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.2,hg002_chrY_paternal_184.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000289;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000289;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000289:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9224175	9224320	.	+	.	source_transcript=hg002_chrY_paternal_184.2;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.2,hg002_chrY_paternal_184.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000289;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000289;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000289:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9224175	9224320	.	+	2	source_transcript=hg002_chrY_paternal_184.2;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.2,hg002_chrY_paternal_184.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000289;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000289;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000289:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9224321	9224415	.	+	.	source_transcript=hg002_chrY_paternal_184.2;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.2,hg002_chrY_paternal_184.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000289;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000289;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000289:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9224416	9224508	.	+	.	source_transcript=hg002_chrY_paternal_184.2;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.2,hg002_chrY_paternal_184.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000289;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000289;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000289:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9224416	9224478	.	+	0	source_transcript=hg002_chrY_paternal_184.2;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.2,hg002_chrY_paternal_184.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000289;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000289;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000289:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9224476	9224478	.	+	0	source_transcript=hg002_chrY_paternal_184.2;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.2,hg002_chrY_paternal_184.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000289;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000289;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=stop_codon:HG003_chrY_T0000289;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9224509	9225202	.	+	.	source_transcript=hg002_chrY_paternal_184.2;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.2,hg002_chrY_paternal_184.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000289;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000289;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000289:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9225203	9225413	.	+	.	source_transcript=hg002_chrY_paternal_184.2;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.2,hg002_chrY_paternal_184.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000289;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000289;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000289:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9222599	9225413	100	+	.	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.3,hg002_chrY_paternal_184.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000290;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_G0000110;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=HG003_chrY_T0000290;Name=TSPY4
HG003_chrY	CAT	exon	9222599	9223148	.	+	.	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.3,hg002_chrY_paternal_184.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000290;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000290;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000290:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9222645	9223148	.	+	0	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.3,hg002_chrY_paternal_184.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000290;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000290;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000290:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9222645	9222647	.	+	0	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.3,hg002_chrY_paternal_184.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000290;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000290;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=start_codon:HG003_chrY_T0000290;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9223149	9223755	.	+	.	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.3,hg002_chrY_paternal_184.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000290;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000290;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000290:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9223756	9223833	.	+	.	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.3,hg002_chrY_paternal_184.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000290;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000290;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000290:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9223756	9223833	.	+	0	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.3,hg002_chrY_paternal_184.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000290;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000290;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000290:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9223834	9223961	.	+	.	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.3,hg002_chrY_paternal_184.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000290;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000290;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000290:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9223962	9224073	.	+	.	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.3,hg002_chrY_paternal_184.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000290;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000290;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000290:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9223962	9224073	.	+	0	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.3,hg002_chrY_paternal_184.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000290;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000290;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000290:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9224074	9224181	.	+	.	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.3,hg002_chrY_paternal_184.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000290;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000290;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000290:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9224182	9224320	.	+	.	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.3,hg002_chrY_paternal_184.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000290;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000290;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000290:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9224182	9224320	.	+	2	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.3,hg002_chrY_paternal_184.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000290;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000290;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000290:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9224321	9224426	.	+	.	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.3,hg002_chrY_paternal_184.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000290;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000290;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000290:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9224427	9224508	.	+	.	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.3,hg002_chrY_paternal_184.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000290;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000290;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000290:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9224427	9224478	.	+	1	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.3,hg002_chrY_paternal_184.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000290;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000290;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000290:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9224476	9224478	.	+	0	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.3,hg002_chrY_paternal_184.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000290;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000290;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=stop_codon:HG003_chrY_T0000290;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9224509	9225202	.	+	.	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.3,hg002_chrY_paternal_184.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000290;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000290;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000290:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9225203	9225413	.	+	.	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.3,hg002_chrY_paternal_184.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000290;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000290;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000290:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9222599	9225413	1000	+	.	source_transcript=hg002_chrY_paternal_184.4;source_transcript_name=hg002_chrY_paternal_184.1;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_184.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.4,hg002_chrY_paternal_184.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000291;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_G0000110;transcript_name=hg002_chrY_paternal_184.1;gene_name=TSPY4;ID=HG003_chrY_T0000291;Name=TSPY4
HG003_chrY	CAT	exon	9222599	9223148	.	+	.	source_transcript=hg002_chrY_paternal_184.4;source_transcript_name=hg002_chrY_paternal_184.1;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_184.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.4,hg002_chrY_paternal_184.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000291;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000291;transcript_name=hg002_chrY_paternal_184.1;gene_name=TSPY4;ID=exon:HG003_chrY_T0000291:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9223149	9223755	.	+	.	source_transcript=hg002_chrY_paternal_184.4;source_transcript_name=hg002_chrY_paternal_184.1;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_184.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.4,hg002_chrY_paternal_184.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000291;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000291;transcript_name=hg002_chrY_paternal_184.1;gene_name=TSPY4;ID=intron:HG003_chrY_T0000291:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9223756	9223833	.	+	.	source_transcript=hg002_chrY_paternal_184.4;source_transcript_name=hg002_chrY_paternal_184.1;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_184.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.4,hg002_chrY_paternal_184.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000291;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000291;transcript_name=hg002_chrY_paternal_184.1;gene_name=TSPY4;ID=exon:HG003_chrY_T0000291:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9223834	9223961	.	+	.	source_transcript=hg002_chrY_paternal_184.4;source_transcript_name=hg002_chrY_paternal_184.1;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_184.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.4,hg002_chrY_paternal_184.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000291;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000291;transcript_name=hg002_chrY_paternal_184.1;gene_name=TSPY4;ID=intron:HG003_chrY_T0000291:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9223962	9224073	.	+	.	source_transcript=hg002_chrY_paternal_184.4;source_transcript_name=hg002_chrY_paternal_184.1;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_184.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.4,hg002_chrY_paternal_184.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000291;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000291;transcript_name=hg002_chrY_paternal_184.1;gene_name=TSPY4;ID=exon:HG003_chrY_T0000291:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9224074	9224181	.	+	.	source_transcript=hg002_chrY_paternal_184.4;source_transcript_name=hg002_chrY_paternal_184.1;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_184.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.4,hg002_chrY_paternal_184.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000291;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000291;transcript_name=hg002_chrY_paternal_184.1;gene_name=TSPY4;ID=intron:HG003_chrY_T0000291:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9224182	9224320	.	+	.	source_transcript=hg002_chrY_paternal_184.4;source_transcript_name=hg002_chrY_paternal_184.1;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_184.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.4,hg002_chrY_paternal_184.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000291;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000291;transcript_name=hg002_chrY_paternal_184.1;gene_name=TSPY4;ID=exon:HG003_chrY_T0000291:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9224321	9224415	.	+	.	source_transcript=hg002_chrY_paternal_184.4;source_transcript_name=hg002_chrY_paternal_184.1;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_184.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.4,hg002_chrY_paternal_184.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000291;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000291;transcript_name=hg002_chrY_paternal_184.1;gene_name=TSPY4;ID=intron:HG003_chrY_T0000291:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9224416	9224508	.	+	.	source_transcript=hg002_chrY_paternal_184.4;source_transcript_name=hg002_chrY_paternal_184.1;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_184.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.4,hg002_chrY_paternal_184.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000291;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000291;transcript_name=hg002_chrY_paternal_184.1;gene_name=TSPY4;ID=exon:HG003_chrY_T0000291:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9224509	9225202	.	+	.	source_transcript=hg002_chrY_paternal_184.4;source_transcript_name=hg002_chrY_paternal_184.1;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_184.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.4,hg002_chrY_paternal_184.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000291;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000291;transcript_name=hg002_chrY_paternal_184.1;gene_name=TSPY4;ID=intron:HG003_chrY_T0000291:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9225203	9225413	.	+	.	source_transcript=hg002_chrY_paternal_184.4;source_transcript_name=hg002_chrY_paternal_184.1;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_184.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_184.4,hg002_chrY_paternal_184.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000291;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000291;transcript_name=hg002_chrY_paternal_184.1;gene_name=TSPY4;ID=exon:HG003_chrY_T0000291:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9234702	9240390	.	-	.	source_gene_common_name=FAM197Y2;source_gene=hg002_chrY_paternal_185;alternative_source_transcripts=hg002_chrY_paternal_185.1,hg002_chrY_paternal_185.1;gene_id=HG003_chrY_G0000111;gene_biotype=lncRNA;gene_name=FAM197Y2;gene_sources=liftoff;ID=HG003_chrY_G0000111;Name=FAM197Y2
HG003_chrY	CAT	transcript	9234702	9240390	1000	-	.	source_transcript=hg002_chrY_paternal_185.1;source_transcript_name=hg002_chrY_paternal_185.1;source_gene=hg002_chrY_paternal_185;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_185;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_185.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_185.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_185.1,hg002_chrY_paternal_185.1;transcript_id=HG003_chrY_T0000292;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_G0000111;transcript_name=hg002_chrY_paternal_185.1;gene_name=FAM197Y2;ID=HG003_chrY_T0000292;Name=FAM197Y2
HG003_chrY	CAT	exon	9234702	9234761	.	-	.	source_transcript=hg002_chrY_paternal_185.1;source_transcript_name=hg002_chrY_paternal_185.1;source_gene=hg002_chrY_paternal_185;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_185;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_185.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_185.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_185.1,hg002_chrY_paternal_185.1;transcript_id=HG003_chrY_T0000292;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000292;transcript_name=hg002_chrY_paternal_185.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000292:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9234762	9238310	.	-	.	source_transcript=hg002_chrY_paternal_185.1;source_transcript_name=hg002_chrY_paternal_185.1;source_gene=hg002_chrY_paternal_185;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_185;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_185.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_185.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_185.1,hg002_chrY_paternal_185.1;transcript_id=HG003_chrY_T0000292;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000292;transcript_name=hg002_chrY_paternal_185.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000292:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9238311	9238469	.	-	.	source_transcript=hg002_chrY_paternal_185.1;source_transcript_name=hg002_chrY_paternal_185.1;source_gene=hg002_chrY_paternal_185;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_185;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_185.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_185.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_185.1,hg002_chrY_paternal_185.1;transcript_id=HG003_chrY_T0000292;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000292;transcript_name=hg002_chrY_paternal_185.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000292:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9238470	9239967	.	-	.	source_transcript=hg002_chrY_paternal_185.1;source_transcript_name=hg002_chrY_paternal_185.1;source_gene=hg002_chrY_paternal_185;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_185;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_185.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_185.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_185.1,hg002_chrY_paternal_185.1;transcript_id=HG003_chrY_T0000292;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000292;transcript_name=hg002_chrY_paternal_185.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000292:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9239968	9240113	.	-	.	source_transcript=hg002_chrY_paternal_185.1;source_transcript_name=hg002_chrY_paternal_185.1;source_gene=hg002_chrY_paternal_185;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_185;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_185.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_185.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_185.1,hg002_chrY_paternal_185.1;transcript_id=HG003_chrY_T0000292;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000292;transcript_name=hg002_chrY_paternal_185.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000292:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9240114	9240199	.	-	.	source_transcript=hg002_chrY_paternal_185.1;source_transcript_name=hg002_chrY_paternal_185.1;source_gene=hg002_chrY_paternal_185;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_185;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_185.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_185.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_185.1,hg002_chrY_paternal_185.1;transcript_id=HG003_chrY_T0000292;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000292;transcript_name=hg002_chrY_paternal_185.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000292:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9240200	9240390	.	-	.	source_transcript=hg002_chrY_paternal_185.1;source_transcript_name=hg002_chrY_paternal_185.1;source_gene=hg002_chrY_paternal_185;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_185;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_185.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_185.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_185.1,hg002_chrY_paternal_185.1;transcript_id=HG003_chrY_T0000292;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000292;transcript_name=hg002_chrY_paternal_185.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000292:3;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9242914	9245710	.	+	.	source_gene_common_name=TSPY3;source_gene=hg002_chrY_paternal_186;alternative_source_transcripts=hg002_chrY_paternal_186.1,hg002_chrY_paternal_186.1;gene_id=HG003_chrY_G0000112;gene_biotype=protein_coding;gene_name=TSPY3;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000112;Name=TSPY3
HG003_chrY	CAT	transcript	9242914	9245710	100	+	.	source_transcript=hg002_chrY_paternal_186.1;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.1,hg002_chrY_paternal_186.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000293;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_G0000112;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=HG003_chrY_T0000293;Name=TSPY3
HG003_chrY	CAT	exon	9242914	9243445	.	+	.	source_transcript=hg002_chrY_paternal_186.1;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.1,hg002_chrY_paternal_186.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000293;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000293;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000293:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9242960	9243445	.	+	0	source_transcript=hg002_chrY_paternal_186.1;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.1,hg002_chrY_paternal_186.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000293;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000293;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000293:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9242960	9242962	.	+	0	source_transcript=hg002_chrY_paternal_186.1;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.1,hg002_chrY_paternal_186.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000293;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000293;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000293;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9243446	9244052	.	+	.	source_transcript=hg002_chrY_paternal_186.1;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.1,hg002_chrY_paternal_186.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000293;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000293;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000293:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9244053	9244130	.	+	.	source_transcript=hg002_chrY_paternal_186.1;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.1,hg002_chrY_paternal_186.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000293;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000293;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000293:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9244053	9244130	.	+	0	source_transcript=hg002_chrY_paternal_186.1;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.1,hg002_chrY_paternal_186.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000293;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000293;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000293:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9244131	9244258	.	+	.	source_transcript=hg002_chrY_paternal_186.1;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.1,hg002_chrY_paternal_186.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000293;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000293;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000293:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9244259	9244370	.	+	.	source_transcript=hg002_chrY_paternal_186.1;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.1,hg002_chrY_paternal_186.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000293;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000293;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000293:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9244259	9244370	.	+	0	source_transcript=hg002_chrY_paternal_186.1;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.1,hg002_chrY_paternal_186.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000293;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000293;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000293:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9244371	9244471	.	+	.	source_transcript=hg002_chrY_paternal_186.1;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.1,hg002_chrY_paternal_186.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000293;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000293;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000293:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9244472	9244617	.	+	.	source_transcript=hg002_chrY_paternal_186.1;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.1,hg002_chrY_paternal_186.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000293;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000293;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000293:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9244472	9244617	.	+	2	source_transcript=hg002_chrY_paternal_186.1;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.1,hg002_chrY_paternal_186.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000293;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000293;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000293:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9244618	9244723	.	+	.	source_transcript=hg002_chrY_paternal_186.1;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.1,hg002_chrY_paternal_186.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000293;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000293;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000293:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9244724	9244805	.	+	.	source_transcript=hg002_chrY_paternal_186.1;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.1,hg002_chrY_paternal_186.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000293;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000293;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000293:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9244724	9244805	.	+	0	source_transcript=hg002_chrY_paternal_186.1;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.1,hg002_chrY_paternal_186.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000293;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000293;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000293:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9244806	9245499	.	+	.	source_transcript=hg002_chrY_paternal_186.1;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.1,hg002_chrY_paternal_186.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000293;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000293;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000293:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9245500	9245710	.	+	.	source_transcript=hg002_chrY_paternal_186.1;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.1,hg002_chrY_paternal_186.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000293;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000293;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000293:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9245500	9245522	.	+	2	source_transcript=hg002_chrY_paternal_186.1;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.1,hg002_chrY_paternal_186.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000293;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000293;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000293:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9245520	9245522	.	+	0	source_transcript=hg002_chrY_paternal_186.1;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.1,hg002_chrY_paternal_186.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000293;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000293;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000293;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9242914	9245710	100	+	.	source_transcript=hg002_chrY_paternal_186.2;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.2,hg002_chrY_paternal_186.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000294;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_G0000112;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=HG003_chrY_T0000294;Name=TSPY3
HG003_chrY	CAT	exon	9242914	9243445	.	+	.	source_transcript=hg002_chrY_paternal_186.2;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.2,hg002_chrY_paternal_186.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000294;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000294;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000294:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9242960	9243445	.	+	0	source_transcript=hg002_chrY_paternal_186.2;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.2,hg002_chrY_paternal_186.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000294;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000294;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000294:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9242960	9242962	.	+	0	source_transcript=hg002_chrY_paternal_186.2;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.2,hg002_chrY_paternal_186.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000294;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000294;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000294;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9243446	9244052	.	+	.	source_transcript=hg002_chrY_paternal_186.2;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.2,hg002_chrY_paternal_186.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000294;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000294;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000294:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9244053	9244130	.	+	.	source_transcript=hg002_chrY_paternal_186.2;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.2,hg002_chrY_paternal_186.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000294;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000294;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000294:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9244053	9244130	.	+	0	source_transcript=hg002_chrY_paternal_186.2;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.2,hg002_chrY_paternal_186.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000294;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000294;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000294:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9244131	9244258	.	+	.	source_transcript=hg002_chrY_paternal_186.2;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.2,hg002_chrY_paternal_186.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000294;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000294;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000294:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9244259	9244370	.	+	.	source_transcript=hg002_chrY_paternal_186.2;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.2,hg002_chrY_paternal_186.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000294;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000294;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000294:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9244259	9244370	.	+	0	source_transcript=hg002_chrY_paternal_186.2;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.2,hg002_chrY_paternal_186.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000294;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000294;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000294:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9244371	9244471	.	+	.	source_transcript=hg002_chrY_paternal_186.2;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.2,hg002_chrY_paternal_186.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000294;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000294;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000294:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9244472	9244617	.	+	.	source_transcript=hg002_chrY_paternal_186.2;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.2,hg002_chrY_paternal_186.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000294;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000294;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000294:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9244472	9244617	.	+	2	source_transcript=hg002_chrY_paternal_186.2;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.2,hg002_chrY_paternal_186.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000294;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000294;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000294:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9244618	9244712	.	+	.	source_transcript=hg002_chrY_paternal_186.2;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.2,hg002_chrY_paternal_186.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000294;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000294;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000294:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9244713	9244805	.	+	.	source_transcript=hg002_chrY_paternal_186.2;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.2,hg002_chrY_paternal_186.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000294;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000294;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000294:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9244713	9244775	.	+	0	source_transcript=hg002_chrY_paternal_186.2;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.2,hg002_chrY_paternal_186.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000294;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000294;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000294:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9244773	9244775	.	+	0	source_transcript=hg002_chrY_paternal_186.2;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.2,hg002_chrY_paternal_186.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000294;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000294;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000294;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9244806	9245499	.	+	.	source_transcript=hg002_chrY_paternal_186.2;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.2,hg002_chrY_paternal_186.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000294;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000294;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000294:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9245500	9245710	.	+	.	source_transcript=hg002_chrY_paternal_186.2;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.2,hg002_chrY_paternal_186.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000294;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000294;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000294:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9242914	9245710	100	+	.	source_transcript=hg002_chrY_paternal_186.3;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.3,hg002_chrY_paternal_186.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000295;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_G0000112;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=HG003_chrY_T0000295;Name=TSPY3
HG003_chrY	CAT	exon	9242914	9243445	.	+	.	source_transcript=hg002_chrY_paternal_186.3;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.3,hg002_chrY_paternal_186.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000295;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000295;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000295:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9242960	9243445	.	+	0	source_transcript=hg002_chrY_paternal_186.3;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.3,hg002_chrY_paternal_186.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000295;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000295;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000295:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9242960	9242962	.	+	0	source_transcript=hg002_chrY_paternal_186.3;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.3,hg002_chrY_paternal_186.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000295;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000295;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000295;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9243446	9244052	.	+	.	source_transcript=hg002_chrY_paternal_186.3;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.3,hg002_chrY_paternal_186.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000295;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000295;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000295:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9244053	9244130	.	+	.	source_transcript=hg002_chrY_paternal_186.3;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.3,hg002_chrY_paternal_186.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000295;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000295;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000295:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9244053	9244130	.	+	0	source_transcript=hg002_chrY_paternal_186.3;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.3,hg002_chrY_paternal_186.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000295;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000295;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000295:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9244131	9244258	.	+	.	source_transcript=hg002_chrY_paternal_186.3;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.3,hg002_chrY_paternal_186.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000295;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000295;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000295:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9244259	9244370	.	+	.	source_transcript=hg002_chrY_paternal_186.3;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.3,hg002_chrY_paternal_186.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000295;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000295;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000295:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9244259	9244370	.	+	0	source_transcript=hg002_chrY_paternal_186.3;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.3,hg002_chrY_paternal_186.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000295;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000295;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000295:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9244371	9244478	.	+	.	source_transcript=hg002_chrY_paternal_186.3;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.3,hg002_chrY_paternal_186.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000295;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000295;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000295:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9244479	9244617	.	+	.	source_transcript=hg002_chrY_paternal_186.3;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.3,hg002_chrY_paternal_186.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000295;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000295;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000295:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9244479	9244617	.	+	2	source_transcript=hg002_chrY_paternal_186.3;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.3,hg002_chrY_paternal_186.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000295;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000295;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000295:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9244618	9244723	.	+	.	source_transcript=hg002_chrY_paternal_186.3;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.3,hg002_chrY_paternal_186.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000295;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000295;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000295:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9244724	9244805	.	+	.	source_transcript=hg002_chrY_paternal_186.3;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.3,hg002_chrY_paternal_186.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000295;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000295;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000295:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9244724	9244775	.	+	1	source_transcript=hg002_chrY_paternal_186.3;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.3,hg002_chrY_paternal_186.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000295;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000295;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000295:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9244773	9244775	.	+	0	source_transcript=hg002_chrY_paternal_186.3;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.3,hg002_chrY_paternal_186.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000295;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000295;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000295;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9244806	9245499	.	+	.	source_transcript=hg002_chrY_paternal_186.3;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.3,hg002_chrY_paternal_186.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000295;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000295;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000295:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9245500	9245710	.	+	.	source_transcript=hg002_chrY_paternal_186.3;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_186.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.3,hg002_chrY_paternal_186.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000295;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000295;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000295:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9242914	9245710	1000	+	.	source_transcript=hg002_chrY_paternal_186.4;source_transcript_name=hg002_chrY_paternal_186.1;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_186.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.4,hg002_chrY_paternal_186.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000296;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_G0000112;transcript_name=hg002_chrY_paternal_186.1;gene_name=TSPY3;ID=HG003_chrY_T0000296;Name=TSPY3
HG003_chrY	CAT	exon	9242914	9243445	.	+	.	source_transcript=hg002_chrY_paternal_186.4;source_transcript_name=hg002_chrY_paternal_186.1;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_186.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.4,hg002_chrY_paternal_186.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000296;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000296;transcript_name=hg002_chrY_paternal_186.1;gene_name=TSPY3;ID=exon:HG003_chrY_T0000296:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9243446	9244052	.	+	.	source_transcript=hg002_chrY_paternal_186.4;source_transcript_name=hg002_chrY_paternal_186.1;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_186.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.4,hg002_chrY_paternal_186.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000296;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000296;transcript_name=hg002_chrY_paternal_186.1;gene_name=TSPY3;ID=intron:HG003_chrY_T0000296:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9244053	9244130	.	+	.	source_transcript=hg002_chrY_paternal_186.4;source_transcript_name=hg002_chrY_paternal_186.1;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_186.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.4,hg002_chrY_paternal_186.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000296;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000296;transcript_name=hg002_chrY_paternal_186.1;gene_name=TSPY3;ID=exon:HG003_chrY_T0000296:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9244131	9244258	.	+	.	source_transcript=hg002_chrY_paternal_186.4;source_transcript_name=hg002_chrY_paternal_186.1;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_186.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.4,hg002_chrY_paternal_186.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000296;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000296;transcript_name=hg002_chrY_paternal_186.1;gene_name=TSPY3;ID=intron:HG003_chrY_T0000296:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9244259	9244370	.	+	.	source_transcript=hg002_chrY_paternal_186.4;source_transcript_name=hg002_chrY_paternal_186.1;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_186.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.4,hg002_chrY_paternal_186.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000296;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000296;transcript_name=hg002_chrY_paternal_186.1;gene_name=TSPY3;ID=exon:HG003_chrY_T0000296:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9244371	9244478	.	+	.	source_transcript=hg002_chrY_paternal_186.4;source_transcript_name=hg002_chrY_paternal_186.1;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_186.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.4,hg002_chrY_paternal_186.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000296;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000296;transcript_name=hg002_chrY_paternal_186.1;gene_name=TSPY3;ID=intron:HG003_chrY_T0000296:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9244479	9244617	.	+	.	source_transcript=hg002_chrY_paternal_186.4;source_transcript_name=hg002_chrY_paternal_186.1;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_186.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.4,hg002_chrY_paternal_186.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000296;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000296;transcript_name=hg002_chrY_paternal_186.1;gene_name=TSPY3;ID=exon:HG003_chrY_T0000296:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9244618	9244712	.	+	.	source_transcript=hg002_chrY_paternal_186.4;source_transcript_name=hg002_chrY_paternal_186.1;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_186.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.4,hg002_chrY_paternal_186.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000296;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000296;transcript_name=hg002_chrY_paternal_186.1;gene_name=TSPY3;ID=intron:HG003_chrY_T0000296:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9244713	9244805	.	+	.	source_transcript=hg002_chrY_paternal_186.4;source_transcript_name=hg002_chrY_paternal_186.1;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_186.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.4,hg002_chrY_paternal_186.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000296;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000296;transcript_name=hg002_chrY_paternal_186.1;gene_name=TSPY3;ID=exon:HG003_chrY_T0000296:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9244806	9245499	.	+	.	source_transcript=hg002_chrY_paternal_186.4;source_transcript_name=hg002_chrY_paternal_186.1;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_186.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.4,hg002_chrY_paternal_186.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000296;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000296;transcript_name=hg002_chrY_paternal_186.1;gene_name=TSPY3;ID=intron:HG003_chrY_T0000296:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9245500	9245710	.	+	.	source_transcript=hg002_chrY_paternal_186.4;source_transcript_name=hg002_chrY_paternal_186.1;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_186.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_186.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_186.4,hg002_chrY_paternal_186.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000296;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000296;transcript_name=hg002_chrY_paternal_186.1;gene_name=TSPY3;ID=exon:HG003_chrY_T0000296:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9254970	9260577	.	-	.	source_gene_common_name=FAM197Y3;source_gene=hg002_chrY_paternal_187;alternative_source_transcripts=hg002_chrY_paternal_187.1,hg002_chrY_paternal_187.1;gene_id=HG003_chrY_G0000113;gene_biotype=lncRNA;gene_name=FAM197Y3;gene_sources=liftoff;ID=HG003_chrY_G0000113;Name=FAM197Y3
HG003_chrY	CAT	transcript	9254970	9260577	1000	-	.	source_transcript=hg002_chrY_paternal_187.1;source_transcript_name=hg002_chrY_paternal_187.1;source_gene=hg002_chrY_paternal_187;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_187;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_187.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_187.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_187.1,hg002_chrY_paternal_187.1;transcript_id=HG003_chrY_T0000297;gene_id=HG003_chrY_G0000113;Parent=HG003_chrY_G0000113;transcript_name=hg002_chrY_paternal_187.1;gene_name=FAM197Y3;ID=HG003_chrY_T0000297;Name=FAM197Y3
HG003_chrY	CAT	exon	9254970	9255029	.	-	.	source_transcript=hg002_chrY_paternal_187.1;source_transcript_name=hg002_chrY_paternal_187.1;source_gene=hg002_chrY_paternal_187;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_187;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_187.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_187.1,hg002_chrY_paternal_187.1;transcript_id=HG003_chrY_T0000297;gene_id=HG003_chrY_G0000113;Parent=HG003_chrY_T0000297;transcript_name=hg002_chrY_paternal_187.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000297:0;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9255030	9258580	.	-	.	source_transcript=hg002_chrY_paternal_187.1;source_transcript_name=hg002_chrY_paternal_187.1;source_gene=hg002_chrY_paternal_187;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_187;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_187.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_187.1,hg002_chrY_paternal_187.1;transcript_id=HG003_chrY_T0000297;gene_id=HG003_chrY_G0000113;Parent=HG003_chrY_T0000297;transcript_name=hg002_chrY_paternal_187.1;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000297:0;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9258581	9258739	.	-	.	source_transcript=hg002_chrY_paternal_187.1;source_transcript_name=hg002_chrY_paternal_187.1;source_gene=hg002_chrY_paternal_187;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_187;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_187.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_187.1,hg002_chrY_paternal_187.1;transcript_id=HG003_chrY_T0000297;gene_id=HG003_chrY_G0000113;Parent=HG003_chrY_T0000297;transcript_name=hg002_chrY_paternal_187.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000297:1;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9258740	9260243	.	-	.	source_transcript=hg002_chrY_paternal_187.1;source_transcript_name=hg002_chrY_paternal_187.1;source_gene=hg002_chrY_paternal_187;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_187;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_187.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_187.1,hg002_chrY_paternal_187.1;transcript_id=HG003_chrY_T0000297;gene_id=HG003_chrY_G0000113;Parent=HG003_chrY_T0000297;transcript_name=hg002_chrY_paternal_187.1;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000297:1;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9260244	9260389	.	-	.	source_transcript=hg002_chrY_paternal_187.1;source_transcript_name=hg002_chrY_paternal_187.1;source_gene=hg002_chrY_paternal_187;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_187;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_187.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_187.1,hg002_chrY_paternal_187.1;transcript_id=HG003_chrY_T0000297;gene_id=HG003_chrY_G0000113;Parent=HG003_chrY_T0000297;transcript_name=hg002_chrY_paternal_187.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000297:2;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9260390	9260475	.	-	.	source_transcript=hg002_chrY_paternal_187.1;source_transcript_name=hg002_chrY_paternal_187.1;source_gene=hg002_chrY_paternal_187;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_187;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_187.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_187.1,hg002_chrY_paternal_187.1;transcript_id=HG003_chrY_T0000297;gene_id=HG003_chrY_G0000113;Parent=HG003_chrY_T0000297;transcript_name=hg002_chrY_paternal_187.1;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000297:2;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9260476	9260577	.	-	.	source_transcript=hg002_chrY_paternal_187.1;source_transcript_name=hg002_chrY_paternal_187.1;source_gene=hg002_chrY_paternal_187;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_187;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_187.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_187.1,hg002_chrY_paternal_187.1;transcript_id=HG003_chrY_T0000297;gene_id=HG003_chrY_G0000113;Parent=HG003_chrY_T0000297;transcript_name=hg002_chrY_paternal_187.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000297:3;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9263190	9265986	.	+	.	source_gene_common_name=TSPY3;source_gene=hg002_chrY_paternal_188;alternative_source_transcripts=hg002_chrY_paternal_188.1,hg002_chrY_paternal_188.1;gene_id=HG003_chrY_G0000114;gene_biotype=protein_coding;gene_name=TSPY3;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000114;Name=TSPY3
HG003_chrY	CAT	transcript	9263190	9265986	100	+	.	source_transcript=hg002_chrY_paternal_188.1;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.1,hg002_chrY_paternal_188.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000298;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_G0000114;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=HG003_chrY_T0000298;Name=TSPY3
HG003_chrY	CAT	exon	9263190	9263721	.	+	.	source_transcript=hg002_chrY_paternal_188.1;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.1,hg002_chrY_paternal_188.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000298;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000298;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000298:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9263236	9263721	.	+	0	source_transcript=hg002_chrY_paternal_188.1;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.1,hg002_chrY_paternal_188.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000298;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000298;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000298:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9263236	9263238	.	+	0	source_transcript=hg002_chrY_paternal_188.1;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.1,hg002_chrY_paternal_188.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000298;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000298;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000298;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9263722	9264328	.	+	.	source_transcript=hg002_chrY_paternal_188.1;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.1,hg002_chrY_paternal_188.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000298;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000298;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000298:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9264329	9264406	.	+	.	source_transcript=hg002_chrY_paternal_188.1;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.1,hg002_chrY_paternal_188.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000298;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000298;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000298:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9264329	9264406	.	+	0	source_transcript=hg002_chrY_paternal_188.1;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.1,hg002_chrY_paternal_188.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000298;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000298;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000298:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9264407	9264534	.	+	.	source_transcript=hg002_chrY_paternal_188.1;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.1,hg002_chrY_paternal_188.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000298;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000298;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000298:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9264535	9264646	.	+	.	source_transcript=hg002_chrY_paternal_188.1;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.1,hg002_chrY_paternal_188.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000298;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000298;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000298:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9264535	9264646	.	+	0	source_transcript=hg002_chrY_paternal_188.1;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.1,hg002_chrY_paternal_188.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000298;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000298;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000298:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9264647	9264747	.	+	.	source_transcript=hg002_chrY_paternal_188.1;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.1,hg002_chrY_paternal_188.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000298;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000298;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000298:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9264748	9264893	.	+	.	source_transcript=hg002_chrY_paternal_188.1;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.1,hg002_chrY_paternal_188.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000298;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000298;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000298:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9264748	9264893	.	+	2	source_transcript=hg002_chrY_paternal_188.1;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.1,hg002_chrY_paternal_188.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000298;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000298;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000298:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9264894	9264999	.	+	.	source_transcript=hg002_chrY_paternal_188.1;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.1,hg002_chrY_paternal_188.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000298;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000298;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000298:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9265000	9265081	.	+	.	source_transcript=hg002_chrY_paternal_188.1;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.1,hg002_chrY_paternal_188.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000298;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000298;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000298:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9265000	9265081	.	+	0	source_transcript=hg002_chrY_paternal_188.1;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.1,hg002_chrY_paternal_188.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000298;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000298;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000298:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9265082	9265775	.	+	.	source_transcript=hg002_chrY_paternal_188.1;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.1,hg002_chrY_paternal_188.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000298;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000298;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000298:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9265776	9265986	.	+	.	source_transcript=hg002_chrY_paternal_188.1;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.1,hg002_chrY_paternal_188.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000298;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000298;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000298:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9265776	9265798	.	+	2	source_transcript=hg002_chrY_paternal_188.1;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.1,hg002_chrY_paternal_188.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000298;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000298;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000298:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9265796	9265798	.	+	0	source_transcript=hg002_chrY_paternal_188.1;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.1,hg002_chrY_paternal_188.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000298;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000298;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000298;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9263190	9265986	100	+	.	source_transcript=hg002_chrY_paternal_188.2;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.2,hg002_chrY_paternal_188.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000299;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_G0000114;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=HG003_chrY_T0000299;Name=TSPY3
HG003_chrY	CAT	exon	9263190	9263721	.	+	.	source_transcript=hg002_chrY_paternal_188.2;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.2,hg002_chrY_paternal_188.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000299;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000299;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000299:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9263236	9263721	.	+	0	source_transcript=hg002_chrY_paternal_188.2;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.2,hg002_chrY_paternal_188.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000299;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000299;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000299:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9263236	9263238	.	+	0	source_transcript=hg002_chrY_paternal_188.2;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.2,hg002_chrY_paternal_188.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000299;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000299;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000299;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9263722	9264328	.	+	.	source_transcript=hg002_chrY_paternal_188.2;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.2,hg002_chrY_paternal_188.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000299;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000299;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000299:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9264329	9264406	.	+	.	source_transcript=hg002_chrY_paternal_188.2;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.2,hg002_chrY_paternal_188.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000299;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000299;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000299:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9264329	9264406	.	+	0	source_transcript=hg002_chrY_paternal_188.2;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.2,hg002_chrY_paternal_188.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000299;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000299;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000299:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9264407	9264534	.	+	.	source_transcript=hg002_chrY_paternal_188.2;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.2,hg002_chrY_paternal_188.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000299;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000299;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000299:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9264535	9264646	.	+	.	source_transcript=hg002_chrY_paternal_188.2;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.2,hg002_chrY_paternal_188.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000299;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000299;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000299:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9264535	9264646	.	+	0	source_transcript=hg002_chrY_paternal_188.2;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.2,hg002_chrY_paternal_188.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000299;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000299;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000299:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9264647	9264747	.	+	.	source_transcript=hg002_chrY_paternal_188.2;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.2,hg002_chrY_paternal_188.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000299;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000299;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000299:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9264748	9264893	.	+	.	source_transcript=hg002_chrY_paternal_188.2;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.2,hg002_chrY_paternal_188.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000299;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000299;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000299:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9264748	9264893	.	+	2	source_transcript=hg002_chrY_paternal_188.2;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.2,hg002_chrY_paternal_188.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000299;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000299;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000299:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9264894	9264988	.	+	.	source_transcript=hg002_chrY_paternal_188.2;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.2,hg002_chrY_paternal_188.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000299;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000299;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000299:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9264989	9265081	.	+	.	source_transcript=hg002_chrY_paternal_188.2;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.2,hg002_chrY_paternal_188.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000299;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000299;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000299:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9264989	9265051	.	+	0	source_transcript=hg002_chrY_paternal_188.2;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.2,hg002_chrY_paternal_188.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000299;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000299;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000299:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9265049	9265051	.	+	0	source_transcript=hg002_chrY_paternal_188.2;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.2,hg002_chrY_paternal_188.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000299;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000299;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000299;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9265082	9265775	.	+	.	source_transcript=hg002_chrY_paternal_188.2;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.2,hg002_chrY_paternal_188.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000299;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000299;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000299:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9265776	9265986	.	+	.	source_transcript=hg002_chrY_paternal_188.2;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.2,hg002_chrY_paternal_188.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000299;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000299;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000299:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9263190	9265986	100	+	.	source_transcript=hg002_chrY_paternal_188.3;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.3,hg002_chrY_paternal_188.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000300;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_G0000114;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=HG003_chrY_T0000300;Name=TSPY3
HG003_chrY	CAT	exon	9263190	9263721	.	+	.	source_transcript=hg002_chrY_paternal_188.3;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.3,hg002_chrY_paternal_188.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000300;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000300;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000300:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9263236	9263721	.	+	0	source_transcript=hg002_chrY_paternal_188.3;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.3,hg002_chrY_paternal_188.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000300;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000300;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000300:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9263236	9263238	.	+	0	source_transcript=hg002_chrY_paternal_188.3;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.3,hg002_chrY_paternal_188.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000300;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000300;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000300;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9263722	9264328	.	+	.	source_transcript=hg002_chrY_paternal_188.3;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.3,hg002_chrY_paternal_188.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000300;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000300;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000300:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9264329	9264406	.	+	.	source_transcript=hg002_chrY_paternal_188.3;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.3,hg002_chrY_paternal_188.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000300;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000300;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000300:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9264329	9264406	.	+	0	source_transcript=hg002_chrY_paternal_188.3;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.3,hg002_chrY_paternal_188.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000300;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000300;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000300:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9264407	9264534	.	+	.	source_transcript=hg002_chrY_paternal_188.3;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.3,hg002_chrY_paternal_188.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000300;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000300;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000300:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9264535	9264646	.	+	.	source_transcript=hg002_chrY_paternal_188.3;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.3,hg002_chrY_paternal_188.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000300;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000300;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000300:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9264535	9264646	.	+	0	source_transcript=hg002_chrY_paternal_188.3;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.3,hg002_chrY_paternal_188.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000300;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000300;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000300:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9264647	9264754	.	+	.	source_transcript=hg002_chrY_paternal_188.3;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.3,hg002_chrY_paternal_188.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000300;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000300;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000300:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9264755	9264893	.	+	.	source_transcript=hg002_chrY_paternal_188.3;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.3,hg002_chrY_paternal_188.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000300;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000300;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000300:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9264755	9264893	.	+	2	source_transcript=hg002_chrY_paternal_188.3;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.3,hg002_chrY_paternal_188.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000300;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000300;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000300:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9264894	9264999	.	+	.	source_transcript=hg002_chrY_paternal_188.3;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.3,hg002_chrY_paternal_188.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000300;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000300;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000300:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9265000	9265081	.	+	.	source_transcript=hg002_chrY_paternal_188.3;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.3,hg002_chrY_paternal_188.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000300;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000300;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000300:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9265000	9265051	.	+	1	source_transcript=hg002_chrY_paternal_188.3;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.3,hg002_chrY_paternal_188.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000300;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000300;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000300:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9265049	9265051	.	+	0	source_transcript=hg002_chrY_paternal_188.3;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.3,hg002_chrY_paternal_188.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000300;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000300;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000300;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9265082	9265775	.	+	.	source_transcript=hg002_chrY_paternal_188.3;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.3,hg002_chrY_paternal_188.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000300;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000300;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000300:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9265776	9265986	.	+	.	source_transcript=hg002_chrY_paternal_188.3;source_transcript_name=hg002_chrY_paternal_188.4;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_188.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.3,hg002_chrY_paternal_188.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000300;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000300;transcript_name=hg002_chrY_paternal_188.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000300:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9263190	9265986	1000	+	.	source_transcript=hg002_chrY_paternal_188.4;source_transcript_name=hg002_chrY_paternal_188.1;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_188.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.4,hg002_chrY_paternal_188.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000301;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_G0000114;transcript_name=hg002_chrY_paternal_188.1;gene_name=TSPY3;ID=HG003_chrY_T0000301;Name=TSPY3
HG003_chrY	CAT	exon	9263190	9263721	.	+	.	source_transcript=hg002_chrY_paternal_188.4;source_transcript_name=hg002_chrY_paternal_188.1;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_188.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.4,hg002_chrY_paternal_188.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000301;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000301;transcript_name=hg002_chrY_paternal_188.1;gene_name=TSPY3;ID=exon:HG003_chrY_T0000301:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9263722	9264328	.	+	.	source_transcript=hg002_chrY_paternal_188.4;source_transcript_name=hg002_chrY_paternal_188.1;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_188.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.4,hg002_chrY_paternal_188.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000301;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000301;transcript_name=hg002_chrY_paternal_188.1;gene_name=TSPY3;ID=intron:HG003_chrY_T0000301:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9264329	9264406	.	+	.	source_transcript=hg002_chrY_paternal_188.4;source_transcript_name=hg002_chrY_paternal_188.1;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_188.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.4,hg002_chrY_paternal_188.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000301;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000301;transcript_name=hg002_chrY_paternal_188.1;gene_name=TSPY3;ID=exon:HG003_chrY_T0000301:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9264407	9264534	.	+	.	source_transcript=hg002_chrY_paternal_188.4;source_transcript_name=hg002_chrY_paternal_188.1;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_188.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.4,hg002_chrY_paternal_188.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000301;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000301;transcript_name=hg002_chrY_paternal_188.1;gene_name=TSPY3;ID=intron:HG003_chrY_T0000301:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9264535	9264646	.	+	.	source_transcript=hg002_chrY_paternal_188.4;source_transcript_name=hg002_chrY_paternal_188.1;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_188.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.4,hg002_chrY_paternal_188.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000301;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000301;transcript_name=hg002_chrY_paternal_188.1;gene_name=TSPY3;ID=exon:HG003_chrY_T0000301:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9264647	9264754	.	+	.	source_transcript=hg002_chrY_paternal_188.4;source_transcript_name=hg002_chrY_paternal_188.1;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_188.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.4,hg002_chrY_paternal_188.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000301;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000301;transcript_name=hg002_chrY_paternal_188.1;gene_name=TSPY3;ID=intron:HG003_chrY_T0000301:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9264755	9264893	.	+	.	source_transcript=hg002_chrY_paternal_188.4;source_transcript_name=hg002_chrY_paternal_188.1;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_188.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.4,hg002_chrY_paternal_188.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000301;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000301;transcript_name=hg002_chrY_paternal_188.1;gene_name=TSPY3;ID=exon:HG003_chrY_T0000301:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9264894	9264988	.	+	.	source_transcript=hg002_chrY_paternal_188.4;source_transcript_name=hg002_chrY_paternal_188.1;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_188.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.4,hg002_chrY_paternal_188.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000301;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000301;transcript_name=hg002_chrY_paternal_188.1;gene_name=TSPY3;ID=intron:HG003_chrY_T0000301:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9264989	9265081	.	+	.	source_transcript=hg002_chrY_paternal_188.4;source_transcript_name=hg002_chrY_paternal_188.1;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_188.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.4,hg002_chrY_paternal_188.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000301;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000301;transcript_name=hg002_chrY_paternal_188.1;gene_name=TSPY3;ID=exon:HG003_chrY_T0000301:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9265082	9265775	.	+	.	source_transcript=hg002_chrY_paternal_188.4;source_transcript_name=hg002_chrY_paternal_188.1;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_188.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.4,hg002_chrY_paternal_188.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000301;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000301;transcript_name=hg002_chrY_paternal_188.1;gene_name=TSPY3;ID=intron:HG003_chrY_T0000301:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9265776	9265986	.	+	.	source_transcript=hg002_chrY_paternal_188.4;source_transcript_name=hg002_chrY_paternal_188.1;source_gene=hg002_chrY_paternal_188;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_188;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_188.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_188.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_188.4,hg002_chrY_paternal_188.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000301;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000301;transcript_name=hg002_chrY_paternal_188.1;gene_name=TSPY3;ID=exon:HG003_chrY_T0000301:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9275258	9280858	.	-	.	source_gene_common_name=FAM197Y3;source_gene=hg002_chrY_paternal_189;alternative_source_transcripts=hg002_chrY_paternal_189.1,hg002_chrY_paternal_189.1;gene_id=HG003_chrY_G0000115;gene_biotype=lncRNA;gene_name=FAM197Y3;gene_sources=liftoff;ID=HG003_chrY_G0000115;Name=FAM197Y3
HG003_chrY	CAT	transcript	9275258	9280858	1000	-	.	source_transcript=hg002_chrY_paternal_189.1;source_transcript_name=hg002_chrY_paternal_189.1;source_gene=hg002_chrY_paternal_189;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_189;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_189.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_189.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_189.1,hg002_chrY_paternal_189.1;transcript_id=HG003_chrY_T0000302;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_G0000115;transcript_name=hg002_chrY_paternal_189.1;gene_name=FAM197Y3;ID=HG003_chrY_T0000302;Name=FAM197Y3
HG003_chrY	CAT	exon	9275258	9275317	.	-	.	source_transcript=hg002_chrY_paternal_189.1;source_transcript_name=hg002_chrY_paternal_189.1;source_gene=hg002_chrY_paternal_189;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_189;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_189.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_189.1,hg002_chrY_paternal_189.1;transcript_id=HG003_chrY_T0000302;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000302;transcript_name=hg002_chrY_paternal_189.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000302:0;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9275318	9278865	.	-	.	source_transcript=hg002_chrY_paternal_189.1;source_transcript_name=hg002_chrY_paternal_189.1;source_gene=hg002_chrY_paternal_189;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_189;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_189.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_189.1,hg002_chrY_paternal_189.1;transcript_id=HG003_chrY_T0000302;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000302;transcript_name=hg002_chrY_paternal_189.1;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000302:0;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9278866	9279024	.	-	.	source_transcript=hg002_chrY_paternal_189.1;source_transcript_name=hg002_chrY_paternal_189.1;source_gene=hg002_chrY_paternal_189;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_189;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_189.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_189.1,hg002_chrY_paternal_189.1;transcript_id=HG003_chrY_T0000302;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000302;transcript_name=hg002_chrY_paternal_189.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000302:1;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9279025	9280524	.	-	.	source_transcript=hg002_chrY_paternal_189.1;source_transcript_name=hg002_chrY_paternal_189.1;source_gene=hg002_chrY_paternal_189;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_189;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_189.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_189.1,hg002_chrY_paternal_189.1;transcript_id=HG003_chrY_T0000302;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000302;transcript_name=hg002_chrY_paternal_189.1;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000302:1;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9280525	9280670	.	-	.	source_transcript=hg002_chrY_paternal_189.1;source_transcript_name=hg002_chrY_paternal_189.1;source_gene=hg002_chrY_paternal_189;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_189;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_189.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_189.1,hg002_chrY_paternal_189.1;transcript_id=HG003_chrY_T0000302;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000302;transcript_name=hg002_chrY_paternal_189.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000302:2;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9280671	9280756	.	-	.	source_transcript=hg002_chrY_paternal_189.1;source_transcript_name=hg002_chrY_paternal_189.1;source_gene=hg002_chrY_paternal_189;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_189;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_189.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_189.1,hg002_chrY_paternal_189.1;transcript_id=HG003_chrY_T0000302;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000302;transcript_name=hg002_chrY_paternal_189.1;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000302:2;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9280757	9280858	.	-	.	source_transcript=hg002_chrY_paternal_189.1;source_transcript_name=hg002_chrY_paternal_189.1;source_gene=hg002_chrY_paternal_189;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_189;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_189.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_189.1,hg002_chrY_paternal_189.1;transcript_id=HG003_chrY_T0000302;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000302;transcript_name=hg002_chrY_paternal_189.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000302:3;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9283467	9286263	.	+	.	source_gene_common_name=TSPY10;source_gene=hg002_chrY_paternal_190;alternative_source_transcripts=hg002_chrY_paternal_190.1,hg002_chrY_paternal_190.1;gene_id=HG003_chrY_G0000116;gene_biotype=protein_coding;gene_name=TSPY10;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000116;Name=TSPY10
HG003_chrY	CAT	transcript	9283467	9286263	100	+	.	source_transcript=hg002_chrY_paternal_190.1;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.1,hg002_chrY_paternal_190.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000303;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_G0000116;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=HG003_chrY_T0000303;Name=TSPY10
HG003_chrY	CAT	exon	9283467	9283998	.	+	.	source_transcript=hg002_chrY_paternal_190.1;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.1,hg002_chrY_paternal_190.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000303;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000303;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000303:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9283513	9283998	.	+	0	source_transcript=hg002_chrY_paternal_190.1;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.1,hg002_chrY_paternal_190.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000303;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000303;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000303:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9283513	9283515	.	+	0	source_transcript=hg002_chrY_paternal_190.1;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.1,hg002_chrY_paternal_190.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000303;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000303;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000303;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9283999	9284605	.	+	.	source_transcript=hg002_chrY_paternal_190.1;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.1,hg002_chrY_paternal_190.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000303;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000303;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000303:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9284606	9284683	.	+	.	source_transcript=hg002_chrY_paternal_190.1;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.1,hg002_chrY_paternal_190.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000303;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000303;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000303:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9284606	9284683	.	+	0	source_transcript=hg002_chrY_paternal_190.1;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.1,hg002_chrY_paternal_190.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000303;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000303;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000303:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9284684	9284811	.	+	.	source_transcript=hg002_chrY_paternal_190.1;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.1,hg002_chrY_paternal_190.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000303;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000303;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000303:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9284812	9284923	.	+	.	source_transcript=hg002_chrY_paternal_190.1;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.1,hg002_chrY_paternal_190.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000303;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000303;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000303:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9284812	9284923	.	+	0	source_transcript=hg002_chrY_paternal_190.1;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.1,hg002_chrY_paternal_190.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000303;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000303;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000303:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9284924	9285024	.	+	.	source_transcript=hg002_chrY_paternal_190.1;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.1,hg002_chrY_paternal_190.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000303;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000303;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000303:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9285025	9285170	.	+	.	source_transcript=hg002_chrY_paternal_190.1;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.1,hg002_chrY_paternal_190.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000303;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000303;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000303:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9285025	9285170	.	+	2	source_transcript=hg002_chrY_paternal_190.1;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.1,hg002_chrY_paternal_190.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000303;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000303;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000303:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9285171	9285276	.	+	.	source_transcript=hg002_chrY_paternal_190.1;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.1,hg002_chrY_paternal_190.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000303;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000303;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000303:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9285277	9285358	.	+	.	source_transcript=hg002_chrY_paternal_190.1;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.1,hg002_chrY_paternal_190.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000303;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000303;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000303:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9285277	9285358	.	+	0	source_transcript=hg002_chrY_paternal_190.1;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.1,hg002_chrY_paternal_190.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000303;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000303;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000303:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9285359	9286052	.	+	.	source_transcript=hg002_chrY_paternal_190.1;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.1,hg002_chrY_paternal_190.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000303;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000303;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000303:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9286053	9286263	.	+	.	source_transcript=hg002_chrY_paternal_190.1;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.1,hg002_chrY_paternal_190.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000303;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000303;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000303:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9286053	9286075	.	+	2	source_transcript=hg002_chrY_paternal_190.1;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.1,hg002_chrY_paternal_190.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000303;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000303;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000303:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9286073	9286075	.	+	0	source_transcript=hg002_chrY_paternal_190.1;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.1,hg002_chrY_paternal_190.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000303;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000303;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000303;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9283467	9286263	100	+	.	source_transcript=hg002_chrY_paternal_190.2;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.2,hg002_chrY_paternal_190.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000304;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_G0000116;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=HG003_chrY_T0000304;Name=TSPY10
HG003_chrY	CAT	exon	9283467	9283998	.	+	.	source_transcript=hg002_chrY_paternal_190.2;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.2,hg002_chrY_paternal_190.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000304;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000304;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000304:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9283513	9283998	.	+	0	source_transcript=hg002_chrY_paternal_190.2;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.2,hg002_chrY_paternal_190.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000304;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000304;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000304:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9283513	9283515	.	+	0	source_transcript=hg002_chrY_paternal_190.2;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.2,hg002_chrY_paternal_190.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000304;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000304;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000304;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9283999	9284605	.	+	.	source_transcript=hg002_chrY_paternal_190.2;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.2,hg002_chrY_paternal_190.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000304;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000304;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000304:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9284606	9284683	.	+	.	source_transcript=hg002_chrY_paternal_190.2;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.2,hg002_chrY_paternal_190.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000304;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000304;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000304:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9284606	9284683	.	+	0	source_transcript=hg002_chrY_paternal_190.2;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.2,hg002_chrY_paternal_190.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000304;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000304;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000304:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9284684	9284811	.	+	.	source_transcript=hg002_chrY_paternal_190.2;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.2,hg002_chrY_paternal_190.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000304;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000304;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000304:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9284812	9284923	.	+	.	source_transcript=hg002_chrY_paternal_190.2;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.2,hg002_chrY_paternal_190.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000304;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000304;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000304:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9284812	9284923	.	+	0	source_transcript=hg002_chrY_paternal_190.2;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.2,hg002_chrY_paternal_190.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000304;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000304;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000304:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9284924	9285024	.	+	.	source_transcript=hg002_chrY_paternal_190.2;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.2,hg002_chrY_paternal_190.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000304;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000304;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000304:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9285025	9285170	.	+	.	source_transcript=hg002_chrY_paternal_190.2;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.2,hg002_chrY_paternal_190.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000304;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000304;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000304:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9285025	9285170	.	+	2	source_transcript=hg002_chrY_paternal_190.2;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.2,hg002_chrY_paternal_190.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000304;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000304;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000304:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9285171	9285265	.	+	.	source_transcript=hg002_chrY_paternal_190.2;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.2,hg002_chrY_paternal_190.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000304;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000304;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000304:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9285266	9285358	.	+	.	source_transcript=hg002_chrY_paternal_190.2;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.2,hg002_chrY_paternal_190.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000304;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000304;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000304:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9285266	9285328	.	+	0	source_transcript=hg002_chrY_paternal_190.2;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.2,hg002_chrY_paternal_190.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000304;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000304;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000304:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9285326	9285328	.	+	0	source_transcript=hg002_chrY_paternal_190.2;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.2,hg002_chrY_paternal_190.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000304;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000304;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000304;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9285359	9286052	.	+	.	source_transcript=hg002_chrY_paternal_190.2;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.2,hg002_chrY_paternal_190.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000304;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000304;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000304:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9286053	9286263	.	+	.	source_transcript=hg002_chrY_paternal_190.2;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.2,hg002_chrY_paternal_190.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000304;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000304;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000304:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9283467	9286263	100	+	.	source_transcript=hg002_chrY_paternal_190.3;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.3,hg002_chrY_paternal_190.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000305;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_G0000116;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=HG003_chrY_T0000305;Name=TSPY10
HG003_chrY	CAT	exon	9283467	9283998	.	+	.	source_transcript=hg002_chrY_paternal_190.3;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.3,hg002_chrY_paternal_190.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000305;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000305;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000305:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9283513	9283998	.	+	0	source_transcript=hg002_chrY_paternal_190.3;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.3,hg002_chrY_paternal_190.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000305;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000305;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000305:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9283513	9283515	.	+	0	source_transcript=hg002_chrY_paternal_190.3;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.3,hg002_chrY_paternal_190.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000305;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000305;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000305;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9283999	9284605	.	+	.	source_transcript=hg002_chrY_paternal_190.3;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.3,hg002_chrY_paternal_190.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000305;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000305;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000305:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9284606	9284683	.	+	.	source_transcript=hg002_chrY_paternal_190.3;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.3,hg002_chrY_paternal_190.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000305;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000305;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000305:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9284606	9284683	.	+	0	source_transcript=hg002_chrY_paternal_190.3;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.3,hg002_chrY_paternal_190.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000305;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000305;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000305:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9284684	9284811	.	+	.	source_transcript=hg002_chrY_paternal_190.3;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.3,hg002_chrY_paternal_190.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000305;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000305;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000305:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9284812	9284923	.	+	.	source_transcript=hg002_chrY_paternal_190.3;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.3,hg002_chrY_paternal_190.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000305;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000305;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000305:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9284812	9284923	.	+	0	source_transcript=hg002_chrY_paternal_190.3;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.3,hg002_chrY_paternal_190.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000305;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000305;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000305:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9284924	9285031	.	+	.	source_transcript=hg002_chrY_paternal_190.3;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.3,hg002_chrY_paternal_190.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000305;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000305;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000305:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9285032	9285170	.	+	.	source_transcript=hg002_chrY_paternal_190.3;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.3,hg002_chrY_paternal_190.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000305;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000305;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000305:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9285032	9285170	.	+	2	source_transcript=hg002_chrY_paternal_190.3;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.3,hg002_chrY_paternal_190.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000305;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000305;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000305:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9285171	9285276	.	+	.	source_transcript=hg002_chrY_paternal_190.3;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.3,hg002_chrY_paternal_190.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000305;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000305;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000305:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9285277	9285358	.	+	.	source_transcript=hg002_chrY_paternal_190.3;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.3,hg002_chrY_paternal_190.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000305;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000305;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000305:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9285277	9285328	.	+	1	source_transcript=hg002_chrY_paternal_190.3;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.3,hg002_chrY_paternal_190.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000305;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000305;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000305:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9285326	9285328	.	+	0	source_transcript=hg002_chrY_paternal_190.3;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.3,hg002_chrY_paternal_190.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000305;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000305;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000305;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9285359	9286052	.	+	.	source_transcript=hg002_chrY_paternal_190.3;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.3,hg002_chrY_paternal_190.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000305;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000305;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000305:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9286053	9286263	.	+	.	source_transcript=hg002_chrY_paternal_190.3;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.3,hg002_chrY_paternal_190.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000305;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000305;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000305:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9283467	9286263	1000	+	.	source_transcript=hg002_chrY_paternal_190.4;source_transcript_name=hg002_chrY_paternal_190.1;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_190.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.4,hg002_chrY_paternal_190.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000306;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_G0000116;transcript_name=hg002_chrY_paternal_190.1;gene_name=TSPY10;ID=HG003_chrY_T0000306;Name=TSPY10
HG003_chrY	CAT	exon	9283467	9283998	.	+	.	source_transcript=hg002_chrY_paternal_190.4;source_transcript_name=hg002_chrY_paternal_190.1;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_190.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.4,hg002_chrY_paternal_190.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000306;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000306;transcript_name=hg002_chrY_paternal_190.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000306:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9283999	9284605	.	+	.	source_transcript=hg002_chrY_paternal_190.4;source_transcript_name=hg002_chrY_paternal_190.1;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_190.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.4,hg002_chrY_paternal_190.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000306;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000306;transcript_name=hg002_chrY_paternal_190.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000306:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9284606	9284683	.	+	.	source_transcript=hg002_chrY_paternal_190.4;source_transcript_name=hg002_chrY_paternal_190.1;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_190.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.4,hg002_chrY_paternal_190.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000306;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000306;transcript_name=hg002_chrY_paternal_190.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000306:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9284684	9284811	.	+	.	source_transcript=hg002_chrY_paternal_190.4;source_transcript_name=hg002_chrY_paternal_190.1;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_190.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.4,hg002_chrY_paternal_190.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000306;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000306;transcript_name=hg002_chrY_paternal_190.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000306:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9284812	9284923	.	+	.	source_transcript=hg002_chrY_paternal_190.4;source_transcript_name=hg002_chrY_paternal_190.1;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_190.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.4,hg002_chrY_paternal_190.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000306;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000306;transcript_name=hg002_chrY_paternal_190.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000306:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9284924	9285031	.	+	.	source_transcript=hg002_chrY_paternal_190.4;source_transcript_name=hg002_chrY_paternal_190.1;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_190.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.4,hg002_chrY_paternal_190.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000306;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000306;transcript_name=hg002_chrY_paternal_190.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000306:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9285032	9285170	.	+	.	source_transcript=hg002_chrY_paternal_190.4;source_transcript_name=hg002_chrY_paternal_190.1;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_190.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.4,hg002_chrY_paternal_190.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000306;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000306;transcript_name=hg002_chrY_paternal_190.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000306:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9285171	9285265	.	+	.	source_transcript=hg002_chrY_paternal_190.4;source_transcript_name=hg002_chrY_paternal_190.1;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_190.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.4,hg002_chrY_paternal_190.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000306;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000306;transcript_name=hg002_chrY_paternal_190.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000306:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9285266	9285358	.	+	.	source_transcript=hg002_chrY_paternal_190.4;source_transcript_name=hg002_chrY_paternal_190.1;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_190.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.4,hg002_chrY_paternal_190.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000306;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000306;transcript_name=hg002_chrY_paternal_190.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000306:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9285359	9286052	.	+	.	source_transcript=hg002_chrY_paternal_190.4;source_transcript_name=hg002_chrY_paternal_190.1;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_190.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.4,hg002_chrY_paternal_190.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000306;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000306;transcript_name=hg002_chrY_paternal_190.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000306:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9286053	9286263	.	+	.	source_transcript=hg002_chrY_paternal_190.4;source_transcript_name=hg002_chrY_paternal_190.1;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_190.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.4,hg002_chrY_paternal_190.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000306;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000306;transcript_name=hg002_chrY_paternal_190.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000306:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9295536	9301229	.	-	.	source_gene_common_name=FAM197Y2;source_gene=hg002_chrY_paternal_191;alternative_source_transcripts=hg002_chrY_paternal_191.1,hg002_chrY_paternal_191.1;gene_id=HG003_chrY_G0000117;gene_biotype=lncRNA;gene_name=FAM197Y2;gene_sources=liftoff;ID=HG003_chrY_G0000117;Name=FAM197Y2
HG003_chrY	CAT	transcript	9295536	9301229	1000	-	.	source_transcript=hg002_chrY_paternal_191.1;source_transcript_name=hg002_chrY_paternal_191.1;source_gene=hg002_chrY_paternal_191;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_191;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_191.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_191.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_191.1,hg002_chrY_paternal_191.1;transcript_id=HG003_chrY_T0000307;gene_id=HG003_chrY_G0000117;Parent=HG003_chrY_G0000117;transcript_name=hg002_chrY_paternal_191.1;gene_name=FAM197Y2;ID=HG003_chrY_T0000307;Name=FAM197Y2
HG003_chrY	CAT	exon	9295536	9295595	.	-	.	source_transcript=hg002_chrY_paternal_191.1;source_transcript_name=hg002_chrY_paternal_191.1;source_gene=hg002_chrY_paternal_191;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_191;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_191.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_191.1,hg002_chrY_paternal_191.1;transcript_id=HG003_chrY_T0000307;gene_id=HG003_chrY_G0000117;Parent=HG003_chrY_T0000307;transcript_name=hg002_chrY_paternal_191.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000307:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9295596	9299145	.	-	.	source_transcript=hg002_chrY_paternal_191.1;source_transcript_name=hg002_chrY_paternal_191.1;source_gene=hg002_chrY_paternal_191;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_191;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_191.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_191.1,hg002_chrY_paternal_191.1;transcript_id=HG003_chrY_T0000307;gene_id=HG003_chrY_G0000117;Parent=HG003_chrY_T0000307;transcript_name=hg002_chrY_paternal_191.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000307:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9299146	9299304	.	-	.	source_transcript=hg002_chrY_paternal_191.1;source_transcript_name=hg002_chrY_paternal_191.1;source_gene=hg002_chrY_paternal_191;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_191;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_191.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_191.1,hg002_chrY_paternal_191.1;transcript_id=HG003_chrY_T0000307;gene_id=HG003_chrY_G0000117;Parent=HG003_chrY_T0000307;transcript_name=hg002_chrY_paternal_191.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000307:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9299305	9300806	.	-	.	source_transcript=hg002_chrY_paternal_191.1;source_transcript_name=hg002_chrY_paternal_191.1;source_gene=hg002_chrY_paternal_191;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_191;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_191.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_191.1,hg002_chrY_paternal_191.1;transcript_id=HG003_chrY_T0000307;gene_id=HG003_chrY_G0000117;Parent=HG003_chrY_T0000307;transcript_name=hg002_chrY_paternal_191.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000307:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9300807	9300952	.	-	.	source_transcript=hg002_chrY_paternal_191.1;source_transcript_name=hg002_chrY_paternal_191.1;source_gene=hg002_chrY_paternal_191;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_191;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_191.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_191.1,hg002_chrY_paternal_191.1;transcript_id=HG003_chrY_T0000307;gene_id=HG003_chrY_G0000117;Parent=HG003_chrY_T0000307;transcript_name=hg002_chrY_paternal_191.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000307:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9300953	9301038	.	-	.	source_transcript=hg002_chrY_paternal_191.1;source_transcript_name=hg002_chrY_paternal_191.1;source_gene=hg002_chrY_paternal_191;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_191;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_191.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_191.1,hg002_chrY_paternal_191.1;transcript_id=HG003_chrY_T0000307;gene_id=HG003_chrY_G0000117;Parent=HG003_chrY_T0000307;transcript_name=hg002_chrY_paternal_191.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000307:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9301039	9301229	.	-	.	source_transcript=hg002_chrY_paternal_191.1;source_transcript_name=hg002_chrY_paternal_191.1;source_gene=hg002_chrY_paternal_191;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_191;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_191.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_191.1,hg002_chrY_paternal_191.1;transcript_id=HG003_chrY_T0000307;gene_id=HG003_chrY_G0000117;Parent=HG003_chrY_T0000307;transcript_name=hg002_chrY_paternal_191.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000307:3;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9303753	9306549	.	+	.	source_gene_common_name=TSPY10;source_gene=hg002_chrY_paternal_192;alternative_source_transcripts=hg002_chrY_paternal_192.1,hg002_chrY_paternal_192.1;gene_id=HG003_chrY_G0000118;gene_biotype=protein_coding;gene_name=TSPY10;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000118;Name=TSPY10
HG003_chrY	CAT	transcript	9303753	9306549	100	+	.	source_transcript=hg002_chrY_paternal_192.1;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.1,hg002_chrY_paternal_192.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000308;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_G0000118;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=HG003_chrY_T0000308;Name=TSPY10
HG003_chrY	CAT	exon	9303753	9304284	.	+	.	source_transcript=hg002_chrY_paternal_192.1;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.1,hg002_chrY_paternal_192.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000308;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000308;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000308:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9303799	9304284	.	+	0	source_transcript=hg002_chrY_paternal_192.1;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.1,hg002_chrY_paternal_192.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000308;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000308;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000308:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9303799	9303801	.	+	0	source_transcript=hg002_chrY_paternal_192.1;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.1,hg002_chrY_paternal_192.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000308;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000308;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000308;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9304285	9304891	.	+	.	source_transcript=hg002_chrY_paternal_192.1;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.1,hg002_chrY_paternal_192.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000308;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000308;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000308:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9304892	9304969	.	+	.	source_transcript=hg002_chrY_paternal_192.1;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.1,hg002_chrY_paternal_192.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000308;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000308;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000308:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9304892	9304969	.	+	0	source_transcript=hg002_chrY_paternal_192.1;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.1,hg002_chrY_paternal_192.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000308;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000308;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000308:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9304970	9305097	.	+	.	source_transcript=hg002_chrY_paternal_192.1;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.1,hg002_chrY_paternal_192.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000308;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000308;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000308:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9305098	9305209	.	+	.	source_transcript=hg002_chrY_paternal_192.1;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.1,hg002_chrY_paternal_192.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000308;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000308;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000308:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9305098	9305209	.	+	0	source_transcript=hg002_chrY_paternal_192.1;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.1,hg002_chrY_paternal_192.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000308;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000308;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000308:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9305210	9305310	.	+	.	source_transcript=hg002_chrY_paternal_192.1;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.1,hg002_chrY_paternal_192.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000308;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000308;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000308:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9305311	9305456	.	+	.	source_transcript=hg002_chrY_paternal_192.1;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.1,hg002_chrY_paternal_192.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000308;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000308;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000308:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9305311	9305456	.	+	2	source_transcript=hg002_chrY_paternal_192.1;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.1,hg002_chrY_paternal_192.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000308;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000308;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000308:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9305457	9305562	.	+	.	source_transcript=hg002_chrY_paternal_192.1;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.1,hg002_chrY_paternal_192.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000308;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000308;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000308:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9305563	9305644	.	+	.	source_transcript=hg002_chrY_paternal_192.1;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.1,hg002_chrY_paternal_192.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000308;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000308;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000308:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9305563	9305644	.	+	0	source_transcript=hg002_chrY_paternal_192.1;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.1,hg002_chrY_paternal_192.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000308;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000308;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000308:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9305645	9306338	.	+	.	source_transcript=hg002_chrY_paternal_192.1;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.1,hg002_chrY_paternal_192.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000308;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000308;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000308:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9306339	9306549	.	+	.	source_transcript=hg002_chrY_paternal_192.1;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.1,hg002_chrY_paternal_192.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000308;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000308;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000308:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9306339	9306361	.	+	2	source_transcript=hg002_chrY_paternal_192.1;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.1,hg002_chrY_paternal_192.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000308;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000308;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000308:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9306359	9306361	.	+	0	source_transcript=hg002_chrY_paternal_192.1;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.1,hg002_chrY_paternal_192.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000308;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000308;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000308;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9303753	9306549	100	+	.	source_transcript=hg002_chrY_paternal_192.2;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.2,hg002_chrY_paternal_192.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000309;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_G0000118;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=HG003_chrY_T0000309;Name=TSPY10
HG003_chrY	CAT	exon	9303753	9304284	.	+	.	source_transcript=hg002_chrY_paternal_192.2;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.2,hg002_chrY_paternal_192.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000309;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000309;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000309:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9303799	9304284	.	+	0	source_transcript=hg002_chrY_paternal_192.2;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.2,hg002_chrY_paternal_192.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000309;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000309;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000309:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9303799	9303801	.	+	0	source_transcript=hg002_chrY_paternal_192.2;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.2,hg002_chrY_paternal_192.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000309;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000309;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000309;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9304285	9304891	.	+	.	source_transcript=hg002_chrY_paternal_192.2;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.2,hg002_chrY_paternal_192.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000309;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000309;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000309:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9304892	9304969	.	+	.	source_transcript=hg002_chrY_paternal_192.2;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.2,hg002_chrY_paternal_192.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000309;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000309;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000309:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9304892	9304969	.	+	0	source_transcript=hg002_chrY_paternal_192.2;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.2,hg002_chrY_paternal_192.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000309;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000309;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000309:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9304970	9305097	.	+	.	source_transcript=hg002_chrY_paternal_192.2;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.2,hg002_chrY_paternal_192.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000309;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000309;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000309:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9305098	9305209	.	+	.	source_transcript=hg002_chrY_paternal_192.2;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.2,hg002_chrY_paternal_192.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000309;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000309;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000309:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9305098	9305209	.	+	0	source_transcript=hg002_chrY_paternal_192.2;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.2,hg002_chrY_paternal_192.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000309;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000309;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000309:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9305210	9305310	.	+	.	source_transcript=hg002_chrY_paternal_192.2;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.2,hg002_chrY_paternal_192.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000309;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000309;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000309:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9305311	9305456	.	+	.	source_transcript=hg002_chrY_paternal_192.2;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.2,hg002_chrY_paternal_192.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000309;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000309;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000309:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9305311	9305456	.	+	2	source_transcript=hg002_chrY_paternal_192.2;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.2,hg002_chrY_paternal_192.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000309;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000309;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000309:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9305457	9305551	.	+	.	source_transcript=hg002_chrY_paternal_192.2;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.2,hg002_chrY_paternal_192.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000309;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000309;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000309:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9305552	9305644	.	+	.	source_transcript=hg002_chrY_paternal_192.2;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.2,hg002_chrY_paternal_192.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000309;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000309;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000309:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9305552	9305614	.	+	0	source_transcript=hg002_chrY_paternal_192.2;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.2,hg002_chrY_paternal_192.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000309;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000309;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000309:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9305612	9305614	.	+	0	source_transcript=hg002_chrY_paternal_192.2;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.2,hg002_chrY_paternal_192.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000309;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000309;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000309;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9305645	9306338	.	+	.	source_transcript=hg002_chrY_paternal_192.2;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.2,hg002_chrY_paternal_192.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000309;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000309;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000309:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9306339	9306549	.	+	.	source_transcript=hg002_chrY_paternal_192.2;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.2,hg002_chrY_paternal_192.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000309;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000309;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000309:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9303753	9306549	100	+	.	source_transcript=hg002_chrY_paternal_192.3;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.3,hg002_chrY_paternal_192.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000310;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_G0000118;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=HG003_chrY_T0000310;Name=TSPY10
HG003_chrY	CAT	exon	9303753	9304284	.	+	.	source_transcript=hg002_chrY_paternal_192.3;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.3,hg002_chrY_paternal_192.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000310;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000310;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000310:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9303799	9304284	.	+	0	source_transcript=hg002_chrY_paternal_192.3;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.3,hg002_chrY_paternal_192.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000310;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000310;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000310:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9303799	9303801	.	+	0	source_transcript=hg002_chrY_paternal_192.3;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.3,hg002_chrY_paternal_192.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000310;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000310;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000310;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9304285	9304891	.	+	.	source_transcript=hg002_chrY_paternal_192.3;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.3,hg002_chrY_paternal_192.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000310;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000310;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000310:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9304892	9304969	.	+	.	source_transcript=hg002_chrY_paternal_192.3;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.3,hg002_chrY_paternal_192.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000310;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000310;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000310:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9304892	9304969	.	+	0	source_transcript=hg002_chrY_paternal_192.3;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.3,hg002_chrY_paternal_192.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000310;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000310;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000310:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9304970	9305097	.	+	.	source_transcript=hg002_chrY_paternal_192.3;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.3,hg002_chrY_paternal_192.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000310;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000310;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000310:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9305098	9305209	.	+	.	source_transcript=hg002_chrY_paternal_192.3;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.3,hg002_chrY_paternal_192.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000310;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000310;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000310:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9305098	9305209	.	+	0	source_transcript=hg002_chrY_paternal_192.3;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.3,hg002_chrY_paternal_192.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000310;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000310;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000310:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9305210	9305317	.	+	.	source_transcript=hg002_chrY_paternal_192.3;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.3,hg002_chrY_paternal_192.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000310;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000310;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000310:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9305318	9305456	.	+	.	source_transcript=hg002_chrY_paternal_192.3;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.3,hg002_chrY_paternal_192.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000310;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000310;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000310:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9305318	9305456	.	+	2	source_transcript=hg002_chrY_paternal_192.3;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.3,hg002_chrY_paternal_192.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000310;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000310;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000310:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9305457	9305562	.	+	.	source_transcript=hg002_chrY_paternal_192.3;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.3,hg002_chrY_paternal_192.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000310;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000310;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000310:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9305563	9305644	.	+	.	source_transcript=hg002_chrY_paternal_192.3;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.3,hg002_chrY_paternal_192.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000310;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000310;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000310:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9305563	9305614	.	+	1	source_transcript=hg002_chrY_paternal_192.3;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.3,hg002_chrY_paternal_192.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000310;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000310;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000310:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9305612	9305614	.	+	0	source_transcript=hg002_chrY_paternal_192.3;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.3,hg002_chrY_paternal_192.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000310;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000310;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000310;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9305645	9306338	.	+	.	source_transcript=hg002_chrY_paternal_192.3;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.3,hg002_chrY_paternal_192.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000310;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000310;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000310:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9306339	9306549	.	+	.	source_transcript=hg002_chrY_paternal_192.3;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.3,hg002_chrY_paternal_192.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000310;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000310;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000310:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9303753	9306549	1000	+	.	source_transcript=hg002_chrY_paternal_192.4;source_transcript_name=hg002_chrY_paternal_192.1;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_192.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.4,hg002_chrY_paternal_192.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000311;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_G0000118;transcript_name=hg002_chrY_paternal_192.1;gene_name=TSPY10;ID=HG003_chrY_T0000311;Name=TSPY10
HG003_chrY	CAT	exon	9303753	9304284	.	+	.	source_transcript=hg002_chrY_paternal_192.4;source_transcript_name=hg002_chrY_paternal_192.1;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_192.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.4,hg002_chrY_paternal_192.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000311;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000311;transcript_name=hg002_chrY_paternal_192.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000311:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9304285	9304891	.	+	.	source_transcript=hg002_chrY_paternal_192.4;source_transcript_name=hg002_chrY_paternal_192.1;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_192.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.4,hg002_chrY_paternal_192.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000311;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000311;transcript_name=hg002_chrY_paternal_192.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000311:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9304892	9304969	.	+	.	source_transcript=hg002_chrY_paternal_192.4;source_transcript_name=hg002_chrY_paternal_192.1;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_192.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.4,hg002_chrY_paternal_192.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000311;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000311;transcript_name=hg002_chrY_paternal_192.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000311:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9304970	9305097	.	+	.	source_transcript=hg002_chrY_paternal_192.4;source_transcript_name=hg002_chrY_paternal_192.1;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_192.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.4,hg002_chrY_paternal_192.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000311;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000311;transcript_name=hg002_chrY_paternal_192.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000311:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9305098	9305209	.	+	.	source_transcript=hg002_chrY_paternal_192.4;source_transcript_name=hg002_chrY_paternal_192.1;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_192.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.4,hg002_chrY_paternal_192.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000311;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000311;transcript_name=hg002_chrY_paternal_192.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000311:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9305210	9305317	.	+	.	source_transcript=hg002_chrY_paternal_192.4;source_transcript_name=hg002_chrY_paternal_192.1;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_192.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.4,hg002_chrY_paternal_192.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000311;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000311;transcript_name=hg002_chrY_paternal_192.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000311:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9305318	9305456	.	+	.	source_transcript=hg002_chrY_paternal_192.4;source_transcript_name=hg002_chrY_paternal_192.1;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_192.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.4,hg002_chrY_paternal_192.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000311;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000311;transcript_name=hg002_chrY_paternal_192.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000311:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9305457	9305551	.	+	.	source_transcript=hg002_chrY_paternal_192.4;source_transcript_name=hg002_chrY_paternal_192.1;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_192.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.4,hg002_chrY_paternal_192.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000311;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000311;transcript_name=hg002_chrY_paternal_192.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000311:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9305552	9305644	.	+	.	source_transcript=hg002_chrY_paternal_192.4;source_transcript_name=hg002_chrY_paternal_192.1;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_192.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.4,hg002_chrY_paternal_192.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000311;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000311;transcript_name=hg002_chrY_paternal_192.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000311:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9305645	9306338	.	+	.	source_transcript=hg002_chrY_paternal_192.4;source_transcript_name=hg002_chrY_paternal_192.1;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_192.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.4,hg002_chrY_paternal_192.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000311;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000311;transcript_name=hg002_chrY_paternal_192.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000311:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9306339	9306549	.	+	.	source_transcript=hg002_chrY_paternal_192.4;source_transcript_name=hg002_chrY_paternal_192.1;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_192.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_192.4,hg002_chrY_paternal_192.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000311;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000311;transcript_name=hg002_chrY_paternal_192.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000311:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9315810	9321492	.	-	.	source_gene_common_name=FAM197Y2;source_gene=hg002_chrY_paternal_193;alternative_source_transcripts=hg002_chrY_paternal_193.1,hg002_chrY_paternal_193.1;gene_id=HG003_chrY_G0000119;gene_biotype=lncRNA;gene_name=FAM197Y2;gene_sources=liftoff;ID=HG003_chrY_G0000119;Name=FAM197Y2
HG003_chrY	CAT	transcript	9315810	9321492	1000	-	.	source_transcript=hg002_chrY_paternal_193.1;source_transcript_name=hg002_chrY_paternal_193.1;source_gene=hg002_chrY_paternal_193;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_193;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_193.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_193.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_193.1,hg002_chrY_paternal_193.1;transcript_id=HG003_chrY_T0000312;gene_id=HG003_chrY_G0000119;Parent=HG003_chrY_G0000119;transcript_name=hg002_chrY_paternal_193.1;gene_name=FAM197Y2;ID=HG003_chrY_T0000312;Name=FAM197Y2
HG003_chrY	CAT	exon	9315810	9315869	.	-	.	source_transcript=hg002_chrY_paternal_193.1;source_transcript_name=hg002_chrY_paternal_193.1;source_gene=hg002_chrY_paternal_193;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_193;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_193.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_193.1,hg002_chrY_paternal_193.1;transcript_id=HG003_chrY_T0000312;gene_id=HG003_chrY_G0000119;Parent=HG003_chrY_T0000312;transcript_name=hg002_chrY_paternal_193.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000312:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9315870	9319418	.	-	.	source_transcript=hg002_chrY_paternal_193.1;source_transcript_name=hg002_chrY_paternal_193.1;source_gene=hg002_chrY_paternal_193;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_193;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_193.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_193.1,hg002_chrY_paternal_193.1;transcript_id=HG003_chrY_T0000312;gene_id=HG003_chrY_G0000119;Parent=HG003_chrY_T0000312;transcript_name=hg002_chrY_paternal_193.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000312:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9319419	9319577	.	-	.	source_transcript=hg002_chrY_paternal_193.1;source_transcript_name=hg002_chrY_paternal_193.1;source_gene=hg002_chrY_paternal_193;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_193;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_193.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_193.1,hg002_chrY_paternal_193.1;transcript_id=HG003_chrY_T0000312;gene_id=HG003_chrY_G0000119;Parent=HG003_chrY_T0000312;transcript_name=hg002_chrY_paternal_193.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000312:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9319578	9321069	.	-	.	source_transcript=hg002_chrY_paternal_193.1;source_transcript_name=hg002_chrY_paternal_193.1;source_gene=hg002_chrY_paternal_193;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_193;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_193.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_193.1,hg002_chrY_paternal_193.1;transcript_id=HG003_chrY_T0000312;gene_id=HG003_chrY_G0000119;Parent=HG003_chrY_T0000312;transcript_name=hg002_chrY_paternal_193.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000312:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9321070	9321215	.	-	.	source_transcript=hg002_chrY_paternal_193.1;source_transcript_name=hg002_chrY_paternal_193.1;source_gene=hg002_chrY_paternal_193;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_193;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_193.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_193.1,hg002_chrY_paternal_193.1;transcript_id=HG003_chrY_T0000312;gene_id=HG003_chrY_G0000119;Parent=HG003_chrY_T0000312;transcript_name=hg002_chrY_paternal_193.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000312:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9321216	9321301	.	-	.	source_transcript=hg002_chrY_paternal_193.1;source_transcript_name=hg002_chrY_paternal_193.1;source_gene=hg002_chrY_paternal_193;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_193;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_193.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_193.1,hg002_chrY_paternal_193.1;transcript_id=HG003_chrY_T0000312;gene_id=HG003_chrY_G0000119;Parent=HG003_chrY_T0000312;transcript_name=hg002_chrY_paternal_193.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000312:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9321302	9321492	.	-	.	source_transcript=hg002_chrY_paternal_193.1;source_transcript_name=hg002_chrY_paternal_193.1;source_gene=hg002_chrY_paternal_193;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_193;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_193.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_193.1,hg002_chrY_paternal_193.1;transcript_id=HG003_chrY_T0000312;gene_id=HG003_chrY_G0000119;Parent=HG003_chrY_T0000312;transcript_name=hg002_chrY_paternal_193.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000312:3;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9324016	9326830	.	+	.	source_gene_common_name=TSPY4;source_gene=hg002_chrY_paternal_194;alternative_source_transcripts=hg002_chrY_paternal_194.1,hg002_chrY_paternal_194.1;gene_id=HG003_chrY_G0000120;gene_biotype=protein_coding;gene_name=TSPY4;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000120;Name=TSPY4
HG003_chrY	CAT	transcript	9324016	9326830	100	+	.	source_transcript=hg002_chrY_paternal_194.1;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.1,hg002_chrY_paternal_194.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000313;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_G0000120;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=HG003_chrY_T0000313;Name=TSPY4
HG003_chrY	CAT	exon	9324016	9324565	.	+	.	source_transcript=hg002_chrY_paternal_194.1;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.1,hg002_chrY_paternal_194.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000313;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000313;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000313:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9324062	9324565	.	+	0	source_transcript=hg002_chrY_paternal_194.1;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.1,hg002_chrY_paternal_194.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000313;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000313;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000313:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9324062	9324064	.	+	0	source_transcript=hg002_chrY_paternal_194.1;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.1,hg002_chrY_paternal_194.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000313;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000313;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=start_codon:HG003_chrY_T0000313;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9324566	9325172	.	+	.	source_transcript=hg002_chrY_paternal_194.1;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.1,hg002_chrY_paternal_194.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000313;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000313;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000313:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9325173	9325250	.	+	.	source_transcript=hg002_chrY_paternal_194.1;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.1,hg002_chrY_paternal_194.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000313;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000313;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000313:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9325173	9325250	.	+	0	source_transcript=hg002_chrY_paternal_194.1;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.1,hg002_chrY_paternal_194.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000313;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000313;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000313:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9325251	9325378	.	+	.	source_transcript=hg002_chrY_paternal_194.1;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.1,hg002_chrY_paternal_194.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000313;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000313;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000313:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9325379	9325490	.	+	.	source_transcript=hg002_chrY_paternal_194.1;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.1,hg002_chrY_paternal_194.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000313;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000313;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000313:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9325379	9325490	.	+	0	source_transcript=hg002_chrY_paternal_194.1;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.1,hg002_chrY_paternal_194.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000313;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000313;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000313:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9325491	9325591	.	+	.	source_transcript=hg002_chrY_paternal_194.1;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.1,hg002_chrY_paternal_194.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000313;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000313;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000313:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9325592	9325737	.	+	.	source_transcript=hg002_chrY_paternal_194.1;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.1,hg002_chrY_paternal_194.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000313;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000313;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000313:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9325592	9325737	.	+	2	source_transcript=hg002_chrY_paternal_194.1;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.1,hg002_chrY_paternal_194.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000313;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000313;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000313:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9325738	9325843	.	+	.	source_transcript=hg002_chrY_paternal_194.1;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.1,hg002_chrY_paternal_194.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000313;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000313;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000313:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9325844	9325925	.	+	.	source_transcript=hg002_chrY_paternal_194.1;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.1,hg002_chrY_paternal_194.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000313;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000313;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000313:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9325844	9325925	.	+	0	source_transcript=hg002_chrY_paternal_194.1;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.1,hg002_chrY_paternal_194.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000313;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000313;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000313:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9325926	9326619	.	+	.	source_transcript=hg002_chrY_paternal_194.1;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.1,hg002_chrY_paternal_194.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000313;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000313;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000313:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9326620	9326830	.	+	.	source_transcript=hg002_chrY_paternal_194.1;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.1,hg002_chrY_paternal_194.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000313;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000313;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000313:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9326620	9326642	.	+	2	source_transcript=hg002_chrY_paternal_194.1;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.1,hg002_chrY_paternal_194.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000313;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000313;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000313:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9326640	9326642	.	+	0	source_transcript=hg002_chrY_paternal_194.1;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.1,hg002_chrY_paternal_194.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000313;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000313;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=stop_codon:HG003_chrY_T0000313;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9324016	9326830	100	+	.	source_transcript=hg002_chrY_paternal_194.2;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.2,hg002_chrY_paternal_194.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000314;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_G0000120;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=HG003_chrY_T0000314;Name=TSPY4
HG003_chrY	CAT	exon	9324016	9324565	.	+	.	source_transcript=hg002_chrY_paternal_194.2;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.2,hg002_chrY_paternal_194.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000314;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000314;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000314:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9324062	9324565	.	+	0	source_transcript=hg002_chrY_paternal_194.2;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.2,hg002_chrY_paternal_194.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000314;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000314;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000314:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9324062	9324064	.	+	0	source_transcript=hg002_chrY_paternal_194.2;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.2,hg002_chrY_paternal_194.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000314;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000314;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=start_codon:HG003_chrY_T0000314;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9324566	9325172	.	+	.	source_transcript=hg002_chrY_paternal_194.2;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.2,hg002_chrY_paternal_194.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000314;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000314;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000314:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9325173	9325250	.	+	.	source_transcript=hg002_chrY_paternal_194.2;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.2,hg002_chrY_paternal_194.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000314;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000314;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000314:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9325173	9325250	.	+	0	source_transcript=hg002_chrY_paternal_194.2;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.2,hg002_chrY_paternal_194.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000314;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000314;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000314:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9325251	9325378	.	+	.	source_transcript=hg002_chrY_paternal_194.2;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.2,hg002_chrY_paternal_194.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000314;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000314;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000314:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9325379	9325490	.	+	.	source_transcript=hg002_chrY_paternal_194.2;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.2,hg002_chrY_paternal_194.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000314;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000314;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000314:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9325379	9325490	.	+	0	source_transcript=hg002_chrY_paternal_194.2;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.2,hg002_chrY_paternal_194.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000314;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000314;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000314:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9325491	9325591	.	+	.	source_transcript=hg002_chrY_paternal_194.2;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.2,hg002_chrY_paternal_194.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000314;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000314;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000314:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9325592	9325737	.	+	.	source_transcript=hg002_chrY_paternal_194.2;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.2,hg002_chrY_paternal_194.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000314;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000314;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000314:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9325592	9325737	.	+	2	source_transcript=hg002_chrY_paternal_194.2;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.2,hg002_chrY_paternal_194.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000314;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000314;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000314:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9325738	9325832	.	+	.	source_transcript=hg002_chrY_paternal_194.2;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.2,hg002_chrY_paternal_194.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000314;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000314;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000314:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9325833	9325925	.	+	.	source_transcript=hg002_chrY_paternal_194.2;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.2,hg002_chrY_paternal_194.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000314;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000314;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000314:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9325833	9325895	.	+	0	source_transcript=hg002_chrY_paternal_194.2;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.2,hg002_chrY_paternal_194.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000314;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000314;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000314:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9325893	9325895	.	+	0	source_transcript=hg002_chrY_paternal_194.2;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.2,hg002_chrY_paternal_194.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000314;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000314;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=stop_codon:HG003_chrY_T0000314;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9325926	9326619	.	+	.	source_transcript=hg002_chrY_paternal_194.2;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.2,hg002_chrY_paternal_194.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000314;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000314;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000314:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9326620	9326830	.	+	.	source_transcript=hg002_chrY_paternal_194.2;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.2,hg002_chrY_paternal_194.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000314;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000314;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000314:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9324016	9326830	100	+	.	source_transcript=hg002_chrY_paternal_194.3;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.3,hg002_chrY_paternal_194.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000315;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_G0000120;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=HG003_chrY_T0000315;Name=TSPY4
HG003_chrY	CAT	exon	9324016	9324565	.	+	.	source_transcript=hg002_chrY_paternal_194.3;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.3,hg002_chrY_paternal_194.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000315;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000315;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000315:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9324062	9324565	.	+	0	source_transcript=hg002_chrY_paternal_194.3;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.3,hg002_chrY_paternal_194.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000315;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000315;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000315:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9324062	9324064	.	+	0	source_transcript=hg002_chrY_paternal_194.3;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.3,hg002_chrY_paternal_194.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000315;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000315;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=start_codon:HG003_chrY_T0000315;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9324566	9325172	.	+	.	source_transcript=hg002_chrY_paternal_194.3;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.3,hg002_chrY_paternal_194.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000315;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000315;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000315:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9325173	9325250	.	+	.	source_transcript=hg002_chrY_paternal_194.3;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.3,hg002_chrY_paternal_194.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000315;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000315;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000315:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9325173	9325250	.	+	0	source_transcript=hg002_chrY_paternal_194.3;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.3,hg002_chrY_paternal_194.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000315;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000315;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000315:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9325251	9325378	.	+	.	source_transcript=hg002_chrY_paternal_194.3;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.3,hg002_chrY_paternal_194.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000315;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000315;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000315:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9325379	9325490	.	+	.	source_transcript=hg002_chrY_paternal_194.3;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.3,hg002_chrY_paternal_194.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000315;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000315;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000315:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9325379	9325490	.	+	0	source_transcript=hg002_chrY_paternal_194.3;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.3,hg002_chrY_paternal_194.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000315;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000315;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000315:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9325491	9325598	.	+	.	source_transcript=hg002_chrY_paternal_194.3;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.3,hg002_chrY_paternal_194.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000315;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000315;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000315:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9325599	9325737	.	+	.	source_transcript=hg002_chrY_paternal_194.3;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.3,hg002_chrY_paternal_194.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000315;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000315;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000315:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9325599	9325737	.	+	2	source_transcript=hg002_chrY_paternal_194.3;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.3,hg002_chrY_paternal_194.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000315;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000315;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000315:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9325738	9325843	.	+	.	source_transcript=hg002_chrY_paternal_194.3;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.3,hg002_chrY_paternal_194.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000315;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000315;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000315:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9325844	9325925	.	+	.	source_transcript=hg002_chrY_paternal_194.3;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.3,hg002_chrY_paternal_194.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000315;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000315;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000315:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9325844	9325895	.	+	1	source_transcript=hg002_chrY_paternal_194.3;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.3,hg002_chrY_paternal_194.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000315;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000315;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000315:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9325893	9325895	.	+	0	source_transcript=hg002_chrY_paternal_194.3;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.3,hg002_chrY_paternal_194.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000315;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000315;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=stop_codon:HG003_chrY_T0000315;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9325926	9326619	.	+	.	source_transcript=hg002_chrY_paternal_194.3;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.3,hg002_chrY_paternal_194.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000315;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000315;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000315:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9326620	9326830	.	+	.	source_transcript=hg002_chrY_paternal_194.3;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.3,hg002_chrY_paternal_194.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000315;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000315;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000315:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9324016	9326830	1000	+	.	source_transcript=hg002_chrY_paternal_194.4;source_transcript_name=hg002_chrY_paternal_194.1;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_194.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.4,hg002_chrY_paternal_194.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000316;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_G0000120;transcript_name=hg002_chrY_paternal_194.1;gene_name=TSPY4;ID=HG003_chrY_T0000316;Name=TSPY4
HG003_chrY	CAT	exon	9324016	9324565	.	+	.	source_transcript=hg002_chrY_paternal_194.4;source_transcript_name=hg002_chrY_paternal_194.1;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_194.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.4,hg002_chrY_paternal_194.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000316;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000316;transcript_name=hg002_chrY_paternal_194.1;gene_name=TSPY4;ID=exon:HG003_chrY_T0000316:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9324566	9325172	.	+	.	source_transcript=hg002_chrY_paternal_194.4;source_transcript_name=hg002_chrY_paternal_194.1;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_194.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.4,hg002_chrY_paternal_194.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000316;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000316;transcript_name=hg002_chrY_paternal_194.1;gene_name=TSPY4;ID=intron:HG003_chrY_T0000316:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9325173	9325250	.	+	.	source_transcript=hg002_chrY_paternal_194.4;source_transcript_name=hg002_chrY_paternal_194.1;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_194.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.4,hg002_chrY_paternal_194.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000316;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000316;transcript_name=hg002_chrY_paternal_194.1;gene_name=TSPY4;ID=exon:HG003_chrY_T0000316:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9325251	9325378	.	+	.	source_transcript=hg002_chrY_paternal_194.4;source_transcript_name=hg002_chrY_paternal_194.1;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_194.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.4,hg002_chrY_paternal_194.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000316;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000316;transcript_name=hg002_chrY_paternal_194.1;gene_name=TSPY4;ID=intron:HG003_chrY_T0000316:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9325379	9325490	.	+	.	source_transcript=hg002_chrY_paternal_194.4;source_transcript_name=hg002_chrY_paternal_194.1;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_194.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.4,hg002_chrY_paternal_194.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000316;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000316;transcript_name=hg002_chrY_paternal_194.1;gene_name=TSPY4;ID=exon:HG003_chrY_T0000316:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9325491	9325598	.	+	.	source_transcript=hg002_chrY_paternal_194.4;source_transcript_name=hg002_chrY_paternal_194.1;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_194.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.4,hg002_chrY_paternal_194.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000316;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000316;transcript_name=hg002_chrY_paternal_194.1;gene_name=TSPY4;ID=intron:HG003_chrY_T0000316:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9325599	9325737	.	+	.	source_transcript=hg002_chrY_paternal_194.4;source_transcript_name=hg002_chrY_paternal_194.1;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_194.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.4,hg002_chrY_paternal_194.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000316;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000316;transcript_name=hg002_chrY_paternal_194.1;gene_name=TSPY4;ID=exon:HG003_chrY_T0000316:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9325738	9325832	.	+	.	source_transcript=hg002_chrY_paternal_194.4;source_transcript_name=hg002_chrY_paternal_194.1;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_194.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.4,hg002_chrY_paternal_194.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000316;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000316;transcript_name=hg002_chrY_paternal_194.1;gene_name=TSPY4;ID=intron:HG003_chrY_T0000316:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9325833	9325925	.	+	.	source_transcript=hg002_chrY_paternal_194.4;source_transcript_name=hg002_chrY_paternal_194.1;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_194.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.4,hg002_chrY_paternal_194.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000316;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000316;transcript_name=hg002_chrY_paternal_194.1;gene_name=TSPY4;ID=exon:HG003_chrY_T0000316:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9325926	9326619	.	+	.	source_transcript=hg002_chrY_paternal_194.4;source_transcript_name=hg002_chrY_paternal_194.1;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_194.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.4,hg002_chrY_paternal_194.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000316;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000316;transcript_name=hg002_chrY_paternal_194.1;gene_name=TSPY4;ID=intron:HG003_chrY_T0000316:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9326620	9326830	.	+	.	source_transcript=hg002_chrY_paternal_194.4;source_transcript_name=hg002_chrY_paternal_194.1;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_194.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_194.4,hg002_chrY_paternal_194.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000316;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000316;transcript_name=hg002_chrY_paternal_194.1;gene_name=TSPY4;ID=exon:HG003_chrY_T0000316:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9336123	9341818	.	-	.	source_gene_common_name=FAM197Y2;source_gene=hg002_chrY_paternal_195;alternative_source_transcripts=hg002_chrY_paternal_195.1,hg002_chrY_paternal_195.1;gene_id=HG003_chrY_G0000121;gene_biotype=lncRNA;gene_name=FAM197Y2;gene_sources=liftoff;ID=HG003_chrY_G0000121;Name=FAM197Y2
HG003_chrY	CAT	transcript	9336123	9341818	1000	-	.	source_transcript=hg002_chrY_paternal_195.1;source_transcript_name=hg002_chrY_paternal_195.1;source_gene=hg002_chrY_paternal_195;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_195;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_195.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_195.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_195.1,hg002_chrY_paternal_195.1;transcript_id=HG003_chrY_T0000317;gene_id=HG003_chrY_G0000121;Parent=HG003_chrY_G0000121;transcript_name=hg002_chrY_paternal_195.1;gene_name=FAM197Y2;ID=HG003_chrY_T0000317;Name=FAM197Y2
HG003_chrY	CAT	exon	9336123	9336182	.	-	.	source_transcript=hg002_chrY_paternal_195.1;source_transcript_name=hg002_chrY_paternal_195.1;source_gene=hg002_chrY_paternal_195;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_195;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_195.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_195.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_195.1,hg002_chrY_paternal_195.1;transcript_id=HG003_chrY_T0000317;gene_id=HG003_chrY_G0000121;Parent=HG003_chrY_T0000317;transcript_name=hg002_chrY_paternal_195.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000317:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9336183	9339736	.	-	.	source_transcript=hg002_chrY_paternal_195.1;source_transcript_name=hg002_chrY_paternal_195.1;source_gene=hg002_chrY_paternal_195;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_195;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_195.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_195.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_195.1,hg002_chrY_paternal_195.1;transcript_id=HG003_chrY_T0000317;gene_id=HG003_chrY_G0000121;Parent=HG003_chrY_T0000317;transcript_name=hg002_chrY_paternal_195.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000317:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9339737	9339895	.	-	.	source_transcript=hg002_chrY_paternal_195.1;source_transcript_name=hg002_chrY_paternal_195.1;source_gene=hg002_chrY_paternal_195;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_195;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_195.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_195.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_195.1,hg002_chrY_paternal_195.1;transcript_id=HG003_chrY_T0000317;gene_id=HG003_chrY_G0000121;Parent=HG003_chrY_T0000317;transcript_name=hg002_chrY_paternal_195.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000317:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9339896	9341395	.	-	.	source_transcript=hg002_chrY_paternal_195.1;source_transcript_name=hg002_chrY_paternal_195.1;source_gene=hg002_chrY_paternal_195;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_195;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_195.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_195.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_195.1,hg002_chrY_paternal_195.1;transcript_id=HG003_chrY_T0000317;gene_id=HG003_chrY_G0000121;Parent=HG003_chrY_T0000317;transcript_name=hg002_chrY_paternal_195.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000317:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9341396	9341541	.	-	.	source_transcript=hg002_chrY_paternal_195.1;source_transcript_name=hg002_chrY_paternal_195.1;source_gene=hg002_chrY_paternal_195;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_195;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_195.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_195.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_195.1,hg002_chrY_paternal_195.1;transcript_id=HG003_chrY_T0000317;gene_id=HG003_chrY_G0000121;Parent=HG003_chrY_T0000317;transcript_name=hg002_chrY_paternal_195.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000317:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9341542	9341627	.	-	.	source_transcript=hg002_chrY_paternal_195.1;source_transcript_name=hg002_chrY_paternal_195.1;source_gene=hg002_chrY_paternal_195;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_195;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_195.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_195.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_195.1,hg002_chrY_paternal_195.1;transcript_id=HG003_chrY_T0000317;gene_id=HG003_chrY_G0000121;Parent=HG003_chrY_T0000317;transcript_name=hg002_chrY_paternal_195.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000317:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9341628	9341818	.	-	.	source_transcript=hg002_chrY_paternal_195.1;source_transcript_name=hg002_chrY_paternal_195.1;source_gene=hg002_chrY_paternal_195;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_195;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_195.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_195.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_195.1,hg002_chrY_paternal_195.1;transcript_id=HG003_chrY_T0000317;gene_id=HG003_chrY_G0000121;Parent=HG003_chrY_T0000317;transcript_name=hg002_chrY_paternal_195.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000317:3;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9344342	9347138	.	+	.	source_gene_common_name=TSPY1;source_gene=hg002_chrY_paternal_196;alternative_source_transcripts=hg002_chrY_paternal_196.1,hg002_chrY_paternal_196.1;gene_id=HG003_chrY_G0000122;gene_biotype=protein_coding;gene_name=TSPY1;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000122;Name=TSPY1
HG003_chrY	CAT	transcript	9344342	9347138	100	+	.	source_transcript=hg002_chrY_paternal_196.1;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.1,hg002_chrY_paternal_196.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000318;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_G0000122;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=HG003_chrY_T0000318;Name=TSPY1
HG003_chrY	CAT	exon	9344342	9344873	.	+	.	source_transcript=hg002_chrY_paternal_196.1;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.1,hg002_chrY_paternal_196.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000318;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000318;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000318:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9344388	9344873	.	+	0	source_transcript=hg002_chrY_paternal_196.1;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.1,hg002_chrY_paternal_196.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000318;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000318;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000318:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9344388	9344390	.	+	0	source_transcript=hg002_chrY_paternal_196.1;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.1,hg002_chrY_paternal_196.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000318;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000318;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=start_codon:HG003_chrY_T0000318;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9344874	9345480	.	+	.	source_transcript=hg002_chrY_paternal_196.1;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.1,hg002_chrY_paternal_196.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000318;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000318;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000318:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9345481	9345558	.	+	.	source_transcript=hg002_chrY_paternal_196.1;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.1,hg002_chrY_paternal_196.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000318;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000318;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000318:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9345481	9345558	.	+	0	source_transcript=hg002_chrY_paternal_196.1;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.1,hg002_chrY_paternal_196.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000318;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000318;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000318:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9345559	9345686	.	+	.	source_transcript=hg002_chrY_paternal_196.1;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.1,hg002_chrY_paternal_196.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000318;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000318;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000318:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9345687	9345798	.	+	.	source_transcript=hg002_chrY_paternal_196.1;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.1,hg002_chrY_paternal_196.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000318;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000318;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000318:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9345687	9345798	.	+	0	source_transcript=hg002_chrY_paternal_196.1;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.1,hg002_chrY_paternal_196.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000318;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000318;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000318:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9345799	9345899	.	+	.	source_transcript=hg002_chrY_paternal_196.1;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.1,hg002_chrY_paternal_196.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000318;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000318;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000318:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9345900	9346045	.	+	.	source_transcript=hg002_chrY_paternal_196.1;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.1,hg002_chrY_paternal_196.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000318;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000318;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000318:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9345900	9346045	.	+	2	source_transcript=hg002_chrY_paternal_196.1;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.1,hg002_chrY_paternal_196.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000318;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000318;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000318:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9346046	9346140	.	+	.	source_transcript=hg002_chrY_paternal_196.1;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.1,hg002_chrY_paternal_196.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000318;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000318;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000318:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9346141	9346233	.	+	.	source_transcript=hg002_chrY_paternal_196.1;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.1,hg002_chrY_paternal_196.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000318;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000318;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000318:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9346141	9346203	.	+	0	source_transcript=hg002_chrY_paternal_196.1;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.1,hg002_chrY_paternal_196.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000318;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000318;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000318:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9346201	9346203	.	+	0	source_transcript=hg002_chrY_paternal_196.1;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.1,hg002_chrY_paternal_196.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000318;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000318;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=stop_codon:HG003_chrY_T0000318;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9346234	9346927	.	+	.	source_transcript=hg002_chrY_paternal_196.1;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.1,hg002_chrY_paternal_196.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000318;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000318;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000318:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9346928	9347138	.	+	.	source_transcript=hg002_chrY_paternal_196.1;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.1,hg002_chrY_paternal_196.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000318;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000318;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000318:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9344342	9347138	100	+	.	source_transcript=hg002_chrY_paternal_196.2;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.2,hg002_chrY_paternal_196.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000319;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_G0000122;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=HG003_chrY_T0000319;Name=TSPY1
HG003_chrY	CAT	exon	9344342	9344474	.	+	.	source_transcript=hg002_chrY_paternal_196.2;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.2,hg002_chrY_paternal_196.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000319;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000319;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000319:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9344388	9344474	.	+	0	source_transcript=hg002_chrY_paternal_196.2;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.2,hg002_chrY_paternal_196.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000319;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000319;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000319:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9344388	9344390	.	+	0	source_transcript=hg002_chrY_paternal_196.2;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.2,hg002_chrY_paternal_196.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000319;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000319;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=start_codon:HG003_chrY_T0000319;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9344475	9344735	.	+	.	source_transcript=hg002_chrY_paternal_196.2;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.2,hg002_chrY_paternal_196.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000319;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000319;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000319:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9344736	9344873	.	+	.	source_transcript=hg002_chrY_paternal_196.2;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.2,hg002_chrY_paternal_196.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000319;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000319;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000319:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9344736	9344873	.	+	0	source_transcript=hg002_chrY_paternal_196.2;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.2,hg002_chrY_paternal_196.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000319;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000319;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000319:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9344874	9345480	.	+	.	source_transcript=hg002_chrY_paternal_196.2;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.2,hg002_chrY_paternal_196.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000319;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000319;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000319:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9345481	9345558	.	+	.	source_transcript=hg002_chrY_paternal_196.2;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.2,hg002_chrY_paternal_196.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000319;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000319;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000319:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9345481	9345558	.	+	0	source_transcript=hg002_chrY_paternal_196.2;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.2,hg002_chrY_paternal_196.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000319;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000319;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000319:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9345559	9345686	.	+	.	source_transcript=hg002_chrY_paternal_196.2;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.2,hg002_chrY_paternal_196.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000319;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000319;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000319:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9345687	9345798	.	+	.	source_transcript=hg002_chrY_paternal_196.2;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.2,hg002_chrY_paternal_196.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000319;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000319;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000319:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9345687	9345798	.	+	0	source_transcript=hg002_chrY_paternal_196.2;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.2,hg002_chrY_paternal_196.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000319;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000319;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000319:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9345799	9345899	.	+	.	source_transcript=hg002_chrY_paternal_196.2;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.2,hg002_chrY_paternal_196.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000319;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000319;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000319:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9345900	9346045	.	+	.	source_transcript=hg002_chrY_paternal_196.2;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.2,hg002_chrY_paternal_196.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000319;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000319;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000319:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9345900	9346045	.	+	2	source_transcript=hg002_chrY_paternal_196.2;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.2,hg002_chrY_paternal_196.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000319;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000319;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000319:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9346046	9346151	.	+	.	source_transcript=hg002_chrY_paternal_196.2;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.2,hg002_chrY_paternal_196.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000319;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000319;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000319:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9346152	9346233	.	+	.	source_transcript=hg002_chrY_paternal_196.2;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.2,hg002_chrY_paternal_196.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000319;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000319;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000319:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9346152	9346233	.	+	0	source_transcript=hg002_chrY_paternal_196.2;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.2,hg002_chrY_paternal_196.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000319;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000319;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000319:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9346234	9346927	.	+	.	source_transcript=hg002_chrY_paternal_196.2;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.2,hg002_chrY_paternal_196.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000319;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000319;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000319:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9346928	9347138	.	+	.	source_transcript=hg002_chrY_paternal_196.2;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.2,hg002_chrY_paternal_196.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000319;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000319;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000319:6;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9346928	9346950	.	+	2	source_transcript=hg002_chrY_paternal_196.2;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.2,hg002_chrY_paternal_196.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000319;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000319;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000319:6;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9346948	9346950	.	+	0	source_transcript=hg002_chrY_paternal_196.2;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.2,hg002_chrY_paternal_196.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000319;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000319;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=stop_codon:HG003_chrY_T0000319;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9344342	9347138	100	+	.	source_transcript=hg002_chrY_paternal_196.3;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.3,hg002_chrY_paternal_196.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000320;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_G0000122;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=HG003_chrY_T0000320;Name=TSPY1
HG003_chrY	CAT	exon	9344342	9344873	.	+	.	source_transcript=hg002_chrY_paternal_196.3;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.3,hg002_chrY_paternal_196.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000320;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000320;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000320:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9344388	9344873	.	+	0	source_transcript=hg002_chrY_paternal_196.3;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.3,hg002_chrY_paternal_196.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000320;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000320;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000320:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9344388	9344390	.	+	0	source_transcript=hg002_chrY_paternal_196.3;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.3,hg002_chrY_paternal_196.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000320;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000320;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=start_codon:HG003_chrY_T0000320;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9344874	9345480	.	+	.	source_transcript=hg002_chrY_paternal_196.3;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.3,hg002_chrY_paternal_196.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000320;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000320;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000320:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9345481	9345558	.	+	.	source_transcript=hg002_chrY_paternal_196.3;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.3,hg002_chrY_paternal_196.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000320;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000320;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000320:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9345481	9345558	.	+	0	source_transcript=hg002_chrY_paternal_196.3;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.3,hg002_chrY_paternal_196.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000320;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000320;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000320:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9345559	9345686	.	+	.	source_transcript=hg002_chrY_paternal_196.3;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.3,hg002_chrY_paternal_196.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000320;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000320;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000320:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9345687	9345798	.	+	.	source_transcript=hg002_chrY_paternal_196.3;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.3,hg002_chrY_paternal_196.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000320;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000320;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000320:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9345687	9345798	.	+	0	source_transcript=hg002_chrY_paternal_196.3;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.3,hg002_chrY_paternal_196.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000320;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000320;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000320:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9345799	9345899	.	+	.	source_transcript=hg002_chrY_paternal_196.3;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.3,hg002_chrY_paternal_196.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000320;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000320;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000320:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9345900	9346045	.	+	.	source_transcript=hg002_chrY_paternal_196.3;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.3,hg002_chrY_paternal_196.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000320;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000320;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000320:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9345900	9346045	.	+	2	source_transcript=hg002_chrY_paternal_196.3;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.3,hg002_chrY_paternal_196.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000320;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000320;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000320:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9346046	9346151	.	+	.	source_transcript=hg002_chrY_paternal_196.3;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.3,hg002_chrY_paternal_196.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000320;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000320;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000320:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9346152	9346233	.	+	.	source_transcript=hg002_chrY_paternal_196.3;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.3,hg002_chrY_paternal_196.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000320;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000320;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000320:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9346152	9346233	.	+	0	source_transcript=hg002_chrY_paternal_196.3;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.3,hg002_chrY_paternal_196.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000320;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000320;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000320:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9346234	9346927	.	+	.	source_transcript=hg002_chrY_paternal_196.3;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.3,hg002_chrY_paternal_196.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000320;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000320;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000320:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9346928	9347138	.	+	.	source_transcript=hg002_chrY_paternal_196.3;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.3,hg002_chrY_paternal_196.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000320;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000320;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000320:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9346928	9346950	.	+	2	source_transcript=hg002_chrY_paternal_196.3;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.3,hg002_chrY_paternal_196.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000320;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000320;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000320:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9346948	9346950	.	+	0	source_transcript=hg002_chrY_paternal_196.3;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.3,hg002_chrY_paternal_196.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000320;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000320;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=stop_codon:HG003_chrY_T0000320;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9344342	9347138	100	+	.	source_transcript=hg002_chrY_paternal_196.4;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.4,hg002_chrY_paternal_196.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000321;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_G0000122;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=HG003_chrY_T0000321;Name=TSPY1
HG003_chrY	CAT	exon	9344342	9344873	.	+	.	source_transcript=hg002_chrY_paternal_196.4;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.4,hg002_chrY_paternal_196.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000321;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000321;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000321:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9344388	9344873	.	+	0	source_transcript=hg002_chrY_paternal_196.4;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.4,hg002_chrY_paternal_196.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000321;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000321;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000321:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9344388	9344390	.	+	0	source_transcript=hg002_chrY_paternal_196.4;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.4,hg002_chrY_paternal_196.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000321;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000321;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=start_codon:HG003_chrY_T0000321;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9344874	9345480	.	+	.	source_transcript=hg002_chrY_paternal_196.4;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.4,hg002_chrY_paternal_196.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000321;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000321;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000321:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9345481	9345558	.	+	.	source_transcript=hg002_chrY_paternal_196.4;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.4,hg002_chrY_paternal_196.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000321;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000321;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000321:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9345481	9345558	.	+	0	source_transcript=hg002_chrY_paternal_196.4;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.4,hg002_chrY_paternal_196.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000321;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000321;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000321:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9345559	9345686	.	+	.	source_transcript=hg002_chrY_paternal_196.4;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.4,hg002_chrY_paternal_196.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000321;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000321;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000321:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9345687	9345798	.	+	.	source_transcript=hg002_chrY_paternal_196.4;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.4,hg002_chrY_paternal_196.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000321;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000321;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000321:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9345687	9345798	.	+	0	source_transcript=hg002_chrY_paternal_196.4;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.4,hg002_chrY_paternal_196.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000321;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000321;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000321:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9345799	9345906	.	+	.	source_transcript=hg002_chrY_paternal_196.4;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.4,hg002_chrY_paternal_196.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000321;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000321;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000321:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9345907	9346045	.	+	.	source_transcript=hg002_chrY_paternal_196.4;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.4,hg002_chrY_paternal_196.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000321;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000321;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000321:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9345907	9346045	.	+	2	source_transcript=hg002_chrY_paternal_196.4;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.4,hg002_chrY_paternal_196.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000321;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000321;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000321:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9346046	9346151	.	+	.	source_transcript=hg002_chrY_paternal_196.4;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.4,hg002_chrY_paternal_196.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000321;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000321;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000321:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9346152	9346233	.	+	.	source_transcript=hg002_chrY_paternal_196.4;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.4,hg002_chrY_paternal_196.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000321;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000321;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000321:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9346152	9346203	.	+	1	source_transcript=hg002_chrY_paternal_196.4;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.4,hg002_chrY_paternal_196.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000321;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000321;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000321:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9346201	9346203	.	+	0	source_transcript=hg002_chrY_paternal_196.4;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.4,hg002_chrY_paternal_196.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000321;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000321;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=stop_codon:HG003_chrY_T0000321;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9346234	9346927	.	+	.	source_transcript=hg002_chrY_paternal_196.4;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.4,hg002_chrY_paternal_196.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000321;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000321;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000321:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9346928	9347138	.	+	.	source_transcript=hg002_chrY_paternal_196.4;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.4,hg002_chrY_paternal_196.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000321;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000321;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000321:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9344342	9347138	1000	+	.	source_transcript=hg002_chrY_paternal_196.5;source_transcript_name=hg002_chrY_paternal_196.1;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_196.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.5,hg002_chrY_paternal_196.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000322;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_G0000122;transcript_name=hg002_chrY_paternal_196.1;gene_name=TSPY1;ID=HG003_chrY_T0000322;Name=TSPY1
HG003_chrY	CAT	exon	9344342	9344873	.	+	.	source_transcript=hg002_chrY_paternal_196.5;source_transcript_name=hg002_chrY_paternal_196.1;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_196.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.5,hg002_chrY_paternal_196.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000322;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000322;transcript_name=hg002_chrY_paternal_196.1;gene_name=TSPY1;ID=exon:HG003_chrY_T0000322:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9344874	9345480	.	+	.	source_transcript=hg002_chrY_paternal_196.5;source_transcript_name=hg002_chrY_paternal_196.1;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_196.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.5,hg002_chrY_paternal_196.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000322;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000322;transcript_name=hg002_chrY_paternal_196.1;gene_name=TSPY1;ID=intron:HG003_chrY_T0000322:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9345481	9345558	.	+	.	source_transcript=hg002_chrY_paternal_196.5;source_transcript_name=hg002_chrY_paternal_196.1;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_196.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.5,hg002_chrY_paternal_196.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000322;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000322;transcript_name=hg002_chrY_paternal_196.1;gene_name=TSPY1;ID=exon:HG003_chrY_T0000322:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9345559	9345686	.	+	.	source_transcript=hg002_chrY_paternal_196.5;source_transcript_name=hg002_chrY_paternal_196.1;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_196.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.5,hg002_chrY_paternal_196.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000322;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000322;transcript_name=hg002_chrY_paternal_196.1;gene_name=TSPY1;ID=intron:HG003_chrY_T0000322:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9345687	9345798	.	+	.	source_transcript=hg002_chrY_paternal_196.5;source_transcript_name=hg002_chrY_paternal_196.1;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_196.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.5,hg002_chrY_paternal_196.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000322;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000322;transcript_name=hg002_chrY_paternal_196.1;gene_name=TSPY1;ID=exon:HG003_chrY_T0000322:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9345799	9345906	.	+	.	source_transcript=hg002_chrY_paternal_196.5;source_transcript_name=hg002_chrY_paternal_196.1;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_196.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.5,hg002_chrY_paternal_196.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000322;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000322;transcript_name=hg002_chrY_paternal_196.1;gene_name=TSPY1;ID=intron:HG003_chrY_T0000322:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9345907	9346045	.	+	.	source_transcript=hg002_chrY_paternal_196.5;source_transcript_name=hg002_chrY_paternal_196.1;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_196.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.5,hg002_chrY_paternal_196.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000322;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000322;transcript_name=hg002_chrY_paternal_196.1;gene_name=TSPY1;ID=exon:HG003_chrY_T0000322:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9346046	9346140	.	+	.	source_transcript=hg002_chrY_paternal_196.5;source_transcript_name=hg002_chrY_paternal_196.1;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_196.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.5,hg002_chrY_paternal_196.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000322;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000322;transcript_name=hg002_chrY_paternal_196.1;gene_name=TSPY1;ID=intron:HG003_chrY_T0000322:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9346141	9346233	.	+	.	source_transcript=hg002_chrY_paternal_196.5;source_transcript_name=hg002_chrY_paternal_196.1;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_196.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.5,hg002_chrY_paternal_196.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000322;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000322;transcript_name=hg002_chrY_paternal_196.1;gene_name=TSPY1;ID=exon:HG003_chrY_T0000322:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9346234	9346927	.	+	.	source_transcript=hg002_chrY_paternal_196.5;source_transcript_name=hg002_chrY_paternal_196.1;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_196.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.5,hg002_chrY_paternal_196.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000322;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000322;transcript_name=hg002_chrY_paternal_196.1;gene_name=TSPY1;ID=intron:HG003_chrY_T0000322:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9346928	9347138	.	+	.	source_transcript=hg002_chrY_paternal_196.5;source_transcript_name=hg002_chrY_paternal_196.1;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_196.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.5,hg002_chrY_paternal_196.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000322;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000322;transcript_name=hg002_chrY_paternal_196.1;gene_name=TSPY1;ID=exon:HG003_chrY_T0000322:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9356418	9362021	.	-	.	source_gene_common_name=FAM197Y3;source_gene=hg002_chrY_paternal_197;alternative_source_transcripts=hg002_chrY_paternal_197.1,hg002_chrY_paternal_197.1;gene_id=HG003_chrY_G0000123;gene_biotype=lncRNA;gene_name=FAM197Y3;gene_sources=liftoff;ID=HG003_chrY_G0000123;Name=FAM197Y3
HG003_chrY	CAT	transcript	9356418	9362021	1000	-	.	source_transcript=hg002_chrY_paternal_197.1;source_transcript_name=hg002_chrY_paternal_197.1;source_gene=hg002_chrY_paternal_197;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_197;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_197.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_197.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_197.1,hg002_chrY_paternal_197.1;transcript_id=HG003_chrY_T0000323;gene_id=HG003_chrY_G0000123;Parent=HG003_chrY_G0000123;transcript_name=hg002_chrY_paternal_197.1;gene_name=FAM197Y3;ID=HG003_chrY_T0000323;Name=FAM197Y3
HG003_chrY	CAT	exon	9356418	9356477	.	-	.	source_transcript=hg002_chrY_paternal_197.1;source_transcript_name=hg002_chrY_paternal_197.1;source_gene=hg002_chrY_paternal_197;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_197;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_197.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_197.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_197.1,hg002_chrY_paternal_197.1;transcript_id=HG003_chrY_T0000323;gene_id=HG003_chrY_G0000123;Parent=HG003_chrY_T0000323;transcript_name=hg002_chrY_paternal_197.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000323:0;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9356478	9360028	.	-	.	source_transcript=hg002_chrY_paternal_197.1;source_transcript_name=hg002_chrY_paternal_197.1;source_gene=hg002_chrY_paternal_197;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_197;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_197.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_197.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_197.1,hg002_chrY_paternal_197.1;transcript_id=HG003_chrY_T0000323;gene_id=HG003_chrY_G0000123;Parent=HG003_chrY_T0000323;transcript_name=hg002_chrY_paternal_197.1;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000323:0;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9360029	9360187	.	-	.	source_transcript=hg002_chrY_paternal_197.1;source_transcript_name=hg002_chrY_paternal_197.1;source_gene=hg002_chrY_paternal_197;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_197;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_197.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_197.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_197.1,hg002_chrY_paternal_197.1;transcript_id=HG003_chrY_T0000323;gene_id=HG003_chrY_G0000123;Parent=HG003_chrY_T0000323;transcript_name=hg002_chrY_paternal_197.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000323:1;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9360188	9361687	.	-	.	source_transcript=hg002_chrY_paternal_197.1;source_transcript_name=hg002_chrY_paternal_197.1;source_gene=hg002_chrY_paternal_197;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_197;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_197.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_197.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_197.1,hg002_chrY_paternal_197.1;transcript_id=HG003_chrY_T0000323;gene_id=HG003_chrY_G0000123;Parent=HG003_chrY_T0000323;transcript_name=hg002_chrY_paternal_197.1;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000323:1;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9361688	9361833	.	-	.	source_transcript=hg002_chrY_paternal_197.1;source_transcript_name=hg002_chrY_paternal_197.1;source_gene=hg002_chrY_paternal_197;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_197;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_197.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_197.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_197.1,hg002_chrY_paternal_197.1;transcript_id=HG003_chrY_T0000323;gene_id=HG003_chrY_G0000123;Parent=HG003_chrY_T0000323;transcript_name=hg002_chrY_paternal_197.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000323:2;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9361834	9361919	.	-	.	source_transcript=hg002_chrY_paternal_197.1;source_transcript_name=hg002_chrY_paternal_197.1;source_gene=hg002_chrY_paternal_197;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_197;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_197.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_197.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_197.1,hg002_chrY_paternal_197.1;transcript_id=HG003_chrY_T0000323;gene_id=HG003_chrY_G0000123;Parent=HG003_chrY_T0000323;transcript_name=hg002_chrY_paternal_197.1;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000323:2;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9361920	9362021	.	-	.	source_transcript=hg002_chrY_paternal_197.1;source_transcript_name=hg002_chrY_paternal_197.1;source_gene=hg002_chrY_paternal_197;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_197;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_197.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_197.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_197.1,hg002_chrY_paternal_197.1;transcript_id=HG003_chrY_T0000323;gene_id=HG003_chrY_G0000123;Parent=HG003_chrY_T0000323;transcript_name=hg002_chrY_paternal_197.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000323:3;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9364634	9367430	.	+	.	source_gene_common_name=TSPY1;source_gene=hg002_chrY_paternal_198;alternative_source_transcripts=hg002_chrY_paternal_198.1,hg002_chrY_paternal_198.1;gene_id=HG003_chrY_G0000124;gene_biotype=protein_coding;gene_name=TSPY1;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000124;Name=TSPY1
HG003_chrY	CAT	transcript	9364634	9367430	100	+	.	source_transcript=hg002_chrY_paternal_198.1;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.1,hg002_chrY_paternal_198.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000324;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_G0000124;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=HG003_chrY_T0000324;Name=TSPY1
HG003_chrY	CAT	exon	9364634	9365165	.	+	.	source_transcript=hg002_chrY_paternal_198.1;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.1,hg002_chrY_paternal_198.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000324;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000324;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000324:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9364680	9365165	.	+	0	source_transcript=hg002_chrY_paternal_198.1;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.1,hg002_chrY_paternal_198.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000324;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000324;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000324:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9364680	9364682	.	+	0	source_transcript=hg002_chrY_paternal_198.1;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.1,hg002_chrY_paternal_198.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000324;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000324;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=start_codon:HG003_chrY_T0000324;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9365166	9365772	.	+	.	source_transcript=hg002_chrY_paternal_198.1;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.1,hg002_chrY_paternal_198.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000324;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000324;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000324:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9365773	9365850	.	+	.	source_transcript=hg002_chrY_paternal_198.1;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.1,hg002_chrY_paternal_198.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000324;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000324;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000324:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9365773	9365850	.	+	0	source_transcript=hg002_chrY_paternal_198.1;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.1,hg002_chrY_paternal_198.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000324;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000324;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000324:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9365851	9365978	.	+	.	source_transcript=hg002_chrY_paternal_198.1;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.1,hg002_chrY_paternal_198.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000324;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000324;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000324:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9365979	9366090	.	+	.	source_transcript=hg002_chrY_paternal_198.1;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.1,hg002_chrY_paternal_198.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000324;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000324;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000324:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9365979	9366090	.	+	0	source_transcript=hg002_chrY_paternal_198.1;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.1,hg002_chrY_paternal_198.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000324;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000324;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000324:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9366091	9366191	.	+	.	source_transcript=hg002_chrY_paternal_198.1;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.1,hg002_chrY_paternal_198.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000324;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000324;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000324:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9366192	9366337	.	+	.	source_transcript=hg002_chrY_paternal_198.1;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.1,hg002_chrY_paternal_198.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000324;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000324;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000324:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9366192	9366337	.	+	2	source_transcript=hg002_chrY_paternal_198.1;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.1,hg002_chrY_paternal_198.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000324;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000324;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000324:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9366338	9366432	.	+	.	source_transcript=hg002_chrY_paternal_198.1;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.1,hg002_chrY_paternal_198.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000324;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000324;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000324:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9366433	9366525	.	+	.	source_transcript=hg002_chrY_paternal_198.1;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.1,hg002_chrY_paternal_198.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000324;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000324;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000324:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9366433	9366495	.	+	0	source_transcript=hg002_chrY_paternal_198.1;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.1,hg002_chrY_paternal_198.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000324;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000324;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000324:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9366493	9366495	.	+	0	source_transcript=hg002_chrY_paternal_198.1;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.1,hg002_chrY_paternal_198.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000324;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000324;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=stop_codon:HG003_chrY_T0000324;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9366526	9367219	.	+	.	source_transcript=hg002_chrY_paternal_198.1;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.1,hg002_chrY_paternal_198.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000324;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000324;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000324:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9367220	9367430	.	+	.	source_transcript=hg002_chrY_paternal_198.1;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.1,hg002_chrY_paternal_198.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000324;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000324;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000324:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9364634	9367430	100	+	.	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.2,hg002_chrY_paternal_198.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000325;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_G0000124;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=HG003_chrY_T0000325;Name=TSPY1
HG003_chrY	CAT	exon	9364634	9364766	.	+	.	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.2,hg002_chrY_paternal_198.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000325;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000325;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000325:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9364680	9364766	.	+	0	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.2,hg002_chrY_paternal_198.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000325;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000325;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000325:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9364680	9364682	.	+	0	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.2,hg002_chrY_paternal_198.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000325;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000325;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=start_codon:HG003_chrY_T0000325;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9364767	9365027	.	+	.	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.2,hg002_chrY_paternal_198.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000325;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000325;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000325:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9365028	9365165	.	+	.	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.2,hg002_chrY_paternal_198.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000325;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000325;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000325:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9365028	9365165	.	+	0	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.2,hg002_chrY_paternal_198.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000325;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000325;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000325:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9365166	9365772	.	+	.	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.2,hg002_chrY_paternal_198.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000325;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000325;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000325:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9365773	9365850	.	+	.	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.2,hg002_chrY_paternal_198.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000325;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000325;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000325:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9365773	9365850	.	+	0	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.2,hg002_chrY_paternal_198.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000325;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000325;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000325:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9365851	9365978	.	+	.	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.2,hg002_chrY_paternal_198.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000325;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000325;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000325:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9365979	9366090	.	+	.	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.2,hg002_chrY_paternal_198.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000325;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000325;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000325:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9365979	9366090	.	+	0	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.2,hg002_chrY_paternal_198.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000325;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000325;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000325:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9366091	9366191	.	+	.	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.2,hg002_chrY_paternal_198.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000325;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000325;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000325:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9366192	9366337	.	+	.	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.2,hg002_chrY_paternal_198.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000325;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000325;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000325:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9366192	9366337	.	+	2	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.2,hg002_chrY_paternal_198.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000325;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000325;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000325:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9366338	9366443	.	+	.	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.2,hg002_chrY_paternal_198.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000325;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000325;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000325:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9366444	9366525	.	+	.	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.2,hg002_chrY_paternal_198.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000325;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000325;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000325:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9366444	9366525	.	+	0	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.2,hg002_chrY_paternal_198.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000325;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000325;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000325:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9366526	9367219	.	+	.	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.2,hg002_chrY_paternal_198.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000325;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000325;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000325:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9367220	9367430	.	+	.	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.2,hg002_chrY_paternal_198.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000325;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000325;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000325:6;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9367220	9367242	.	+	2	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.2,hg002_chrY_paternal_198.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000325;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000325;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000325:6;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9367240	9367242	.	+	0	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.2,hg002_chrY_paternal_198.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000325;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000325;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=stop_codon:HG003_chrY_T0000325;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9364634	9367430	100	+	.	source_transcript=hg002_chrY_paternal_198.3;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.3,hg002_chrY_paternal_198.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000326;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_G0000124;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=HG003_chrY_T0000326;Name=TSPY1
HG003_chrY	CAT	exon	9364634	9365165	.	+	.	source_transcript=hg002_chrY_paternal_198.3;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.3,hg002_chrY_paternal_198.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000326;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000326;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000326:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9364680	9365165	.	+	0	source_transcript=hg002_chrY_paternal_198.3;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.3,hg002_chrY_paternal_198.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000326;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000326;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000326:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9364680	9364682	.	+	0	source_transcript=hg002_chrY_paternal_198.3;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.3,hg002_chrY_paternal_198.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000326;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000326;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=start_codon:HG003_chrY_T0000326;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9365166	9365772	.	+	.	source_transcript=hg002_chrY_paternal_198.3;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.3,hg002_chrY_paternal_198.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000326;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000326;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000326:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9365773	9365850	.	+	.	source_transcript=hg002_chrY_paternal_198.3;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.3,hg002_chrY_paternal_198.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000326;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000326;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000326:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9365773	9365850	.	+	0	source_transcript=hg002_chrY_paternal_198.3;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.3,hg002_chrY_paternal_198.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000326;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000326;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000326:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9365851	9365978	.	+	.	source_transcript=hg002_chrY_paternal_198.3;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.3,hg002_chrY_paternal_198.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000326;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000326;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000326:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9365979	9366090	.	+	.	source_transcript=hg002_chrY_paternal_198.3;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.3,hg002_chrY_paternal_198.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000326;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000326;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000326:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9365979	9366090	.	+	0	source_transcript=hg002_chrY_paternal_198.3;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.3,hg002_chrY_paternal_198.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000326;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000326;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000326:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9366091	9366191	.	+	.	source_transcript=hg002_chrY_paternal_198.3;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.3,hg002_chrY_paternal_198.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000326;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000326;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000326:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9366192	9366337	.	+	.	source_transcript=hg002_chrY_paternal_198.3;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.3,hg002_chrY_paternal_198.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000326;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000326;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000326:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9366192	9366337	.	+	2	source_transcript=hg002_chrY_paternal_198.3;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.3,hg002_chrY_paternal_198.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000326;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000326;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000326:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9366338	9366443	.	+	.	source_transcript=hg002_chrY_paternal_198.3;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.3,hg002_chrY_paternal_198.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000326;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000326;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000326:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9366444	9366525	.	+	.	source_transcript=hg002_chrY_paternal_198.3;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.3,hg002_chrY_paternal_198.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000326;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000326;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000326:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9366444	9366525	.	+	0	source_transcript=hg002_chrY_paternal_198.3;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.3,hg002_chrY_paternal_198.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000326;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000326;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000326:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9366526	9367219	.	+	.	source_transcript=hg002_chrY_paternal_198.3;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.3,hg002_chrY_paternal_198.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000326;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000326;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000326:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9367220	9367430	.	+	.	source_transcript=hg002_chrY_paternal_198.3;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.3,hg002_chrY_paternal_198.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000326;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000326;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000326:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9367220	9367242	.	+	2	source_transcript=hg002_chrY_paternal_198.3;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.3,hg002_chrY_paternal_198.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000326;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000326;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000326:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9367240	9367242	.	+	0	source_transcript=hg002_chrY_paternal_198.3;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.3,hg002_chrY_paternal_198.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000326;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000326;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=stop_codon:HG003_chrY_T0000326;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9364634	9367430	100	+	.	source_transcript=hg002_chrY_paternal_198.4;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.4,hg002_chrY_paternal_198.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000327;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_G0000124;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=HG003_chrY_T0000327;Name=TSPY1
HG003_chrY	CAT	exon	9364634	9365165	.	+	.	source_transcript=hg002_chrY_paternal_198.4;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.4,hg002_chrY_paternal_198.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000327;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000327;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000327:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9364680	9365165	.	+	0	source_transcript=hg002_chrY_paternal_198.4;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.4,hg002_chrY_paternal_198.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000327;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000327;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000327:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9364680	9364682	.	+	0	source_transcript=hg002_chrY_paternal_198.4;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.4,hg002_chrY_paternal_198.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000327;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000327;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=start_codon:HG003_chrY_T0000327;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9365166	9365772	.	+	.	source_transcript=hg002_chrY_paternal_198.4;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.4,hg002_chrY_paternal_198.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000327;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000327;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000327:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9365773	9365850	.	+	.	source_transcript=hg002_chrY_paternal_198.4;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.4,hg002_chrY_paternal_198.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000327;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000327;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000327:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9365773	9365850	.	+	0	source_transcript=hg002_chrY_paternal_198.4;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.4,hg002_chrY_paternal_198.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000327;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000327;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000327:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9365851	9365978	.	+	.	source_transcript=hg002_chrY_paternal_198.4;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.4,hg002_chrY_paternal_198.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000327;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000327;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000327:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9365979	9366090	.	+	.	source_transcript=hg002_chrY_paternal_198.4;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.4,hg002_chrY_paternal_198.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000327;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000327;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000327:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9365979	9366090	.	+	0	source_transcript=hg002_chrY_paternal_198.4;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.4,hg002_chrY_paternal_198.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000327;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000327;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000327:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9366091	9366198	.	+	.	source_transcript=hg002_chrY_paternal_198.4;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.4,hg002_chrY_paternal_198.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000327;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000327;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000327:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9366199	9366337	.	+	.	source_transcript=hg002_chrY_paternal_198.4;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.4,hg002_chrY_paternal_198.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000327;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000327;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000327:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9366199	9366337	.	+	2	source_transcript=hg002_chrY_paternal_198.4;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.4,hg002_chrY_paternal_198.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000327;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000327;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000327:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9366338	9366443	.	+	.	source_transcript=hg002_chrY_paternal_198.4;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.4,hg002_chrY_paternal_198.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000327;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000327;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000327:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9366444	9366525	.	+	.	source_transcript=hg002_chrY_paternal_198.4;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.4,hg002_chrY_paternal_198.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000327;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000327;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000327:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9366444	9366495	.	+	1	source_transcript=hg002_chrY_paternal_198.4;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.4,hg002_chrY_paternal_198.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000327;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000327;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000327:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9366493	9366495	.	+	0	source_transcript=hg002_chrY_paternal_198.4;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.4,hg002_chrY_paternal_198.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000327;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000327;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=stop_codon:HG003_chrY_T0000327;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9366526	9367219	.	+	.	source_transcript=hg002_chrY_paternal_198.4;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.4,hg002_chrY_paternal_198.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000327;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000327;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000327:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9367220	9367430	.	+	.	source_transcript=hg002_chrY_paternal_198.4;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.4,hg002_chrY_paternal_198.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000327;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000327;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000327:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9364634	9367430	1000	+	.	source_transcript=hg002_chrY_paternal_198.5;source_transcript_name=hg002_chrY_paternal_198.1;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_198.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.5,hg002_chrY_paternal_198.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000328;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_G0000124;transcript_name=hg002_chrY_paternal_198.1;gene_name=TSPY1;ID=HG003_chrY_T0000328;Name=TSPY1
HG003_chrY	CAT	exon	9364634	9365165	.	+	.	source_transcript=hg002_chrY_paternal_198.5;source_transcript_name=hg002_chrY_paternal_198.1;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_198.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.5,hg002_chrY_paternal_198.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000328;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000328;transcript_name=hg002_chrY_paternal_198.1;gene_name=TSPY1;ID=exon:HG003_chrY_T0000328:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9365166	9365772	.	+	.	source_transcript=hg002_chrY_paternal_198.5;source_transcript_name=hg002_chrY_paternal_198.1;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_198.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.5,hg002_chrY_paternal_198.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000328;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000328;transcript_name=hg002_chrY_paternal_198.1;gene_name=TSPY1;ID=intron:HG003_chrY_T0000328:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9365773	9365850	.	+	.	source_transcript=hg002_chrY_paternal_198.5;source_transcript_name=hg002_chrY_paternal_198.1;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_198.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.5,hg002_chrY_paternal_198.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000328;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000328;transcript_name=hg002_chrY_paternal_198.1;gene_name=TSPY1;ID=exon:HG003_chrY_T0000328:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9365851	9365978	.	+	.	source_transcript=hg002_chrY_paternal_198.5;source_transcript_name=hg002_chrY_paternal_198.1;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_198.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.5,hg002_chrY_paternal_198.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000328;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000328;transcript_name=hg002_chrY_paternal_198.1;gene_name=TSPY1;ID=intron:HG003_chrY_T0000328:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9365979	9366090	.	+	.	source_transcript=hg002_chrY_paternal_198.5;source_transcript_name=hg002_chrY_paternal_198.1;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_198.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.5,hg002_chrY_paternal_198.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000328;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000328;transcript_name=hg002_chrY_paternal_198.1;gene_name=TSPY1;ID=exon:HG003_chrY_T0000328:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9366091	9366198	.	+	.	source_transcript=hg002_chrY_paternal_198.5;source_transcript_name=hg002_chrY_paternal_198.1;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_198.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.5,hg002_chrY_paternal_198.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000328;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000328;transcript_name=hg002_chrY_paternal_198.1;gene_name=TSPY1;ID=intron:HG003_chrY_T0000328:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9366199	9366337	.	+	.	source_transcript=hg002_chrY_paternal_198.5;source_transcript_name=hg002_chrY_paternal_198.1;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_198.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.5,hg002_chrY_paternal_198.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000328;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000328;transcript_name=hg002_chrY_paternal_198.1;gene_name=TSPY1;ID=exon:HG003_chrY_T0000328:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9366338	9366432	.	+	.	source_transcript=hg002_chrY_paternal_198.5;source_transcript_name=hg002_chrY_paternal_198.1;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_198.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.5,hg002_chrY_paternal_198.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000328;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000328;transcript_name=hg002_chrY_paternal_198.1;gene_name=TSPY1;ID=intron:HG003_chrY_T0000328:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9366433	9366525	.	+	.	source_transcript=hg002_chrY_paternal_198.5;source_transcript_name=hg002_chrY_paternal_198.1;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_198.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.5,hg002_chrY_paternal_198.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000328;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000328;transcript_name=hg002_chrY_paternal_198.1;gene_name=TSPY1;ID=exon:HG003_chrY_T0000328:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9366526	9367219	.	+	.	source_transcript=hg002_chrY_paternal_198.5;source_transcript_name=hg002_chrY_paternal_198.1;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_198.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.5,hg002_chrY_paternal_198.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000328;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000328;transcript_name=hg002_chrY_paternal_198.1;gene_name=TSPY1;ID=intron:HG003_chrY_T0000328:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9367220	9367430	.	+	.	source_transcript=hg002_chrY_paternal_198.5;source_transcript_name=hg002_chrY_paternal_198.1;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_198.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_198.5,hg002_chrY_paternal_198.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000328;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000328;transcript_name=hg002_chrY_paternal_198.1;gene_name=TSPY1;ID=exon:HG003_chrY_T0000328:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9376700	9382311	.	-	.	source_gene_common_name=FAM197Y3;source_gene=hg002_chrY_paternal_199;alternative_source_transcripts=hg002_chrY_paternal_199.1,hg002_chrY_paternal_199.1;gene_id=HG003_chrY_G0000125;gene_biotype=lncRNA;gene_name=FAM197Y3;gene_sources=liftoff;ID=HG003_chrY_G0000125;Name=FAM197Y3
HG003_chrY	CAT	transcript	9376700	9382311	1000	-	.	source_transcript=hg002_chrY_paternal_199.1;source_transcript_name=hg002_chrY_paternal_199.1;source_gene=hg002_chrY_paternal_199;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_199;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_199.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_199.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_199.1,hg002_chrY_paternal_199.1;transcript_id=HG003_chrY_T0000329;gene_id=HG003_chrY_G0000125;Parent=HG003_chrY_G0000125;transcript_name=hg002_chrY_paternal_199.1;gene_name=FAM197Y3;ID=HG003_chrY_T0000329;Name=FAM197Y3
HG003_chrY	CAT	exon	9376700	9376759	.	-	.	source_transcript=hg002_chrY_paternal_199.1;source_transcript_name=hg002_chrY_paternal_199.1;source_gene=hg002_chrY_paternal_199;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_199;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_199.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_199.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_199.1,hg002_chrY_paternal_199.1;transcript_id=HG003_chrY_T0000329;gene_id=HG003_chrY_G0000125;Parent=HG003_chrY_T0000329;transcript_name=hg002_chrY_paternal_199.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000329:0;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9376760	9380310	.	-	.	source_transcript=hg002_chrY_paternal_199.1;source_transcript_name=hg002_chrY_paternal_199.1;source_gene=hg002_chrY_paternal_199;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_199;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_199.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_199.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_199.1,hg002_chrY_paternal_199.1;transcript_id=HG003_chrY_T0000329;gene_id=HG003_chrY_G0000125;Parent=HG003_chrY_T0000329;transcript_name=hg002_chrY_paternal_199.1;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000329:0;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9380311	9380469	.	-	.	source_transcript=hg002_chrY_paternal_199.1;source_transcript_name=hg002_chrY_paternal_199.1;source_gene=hg002_chrY_paternal_199;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_199;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_199.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_199.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_199.1,hg002_chrY_paternal_199.1;transcript_id=HG003_chrY_T0000329;gene_id=HG003_chrY_G0000125;Parent=HG003_chrY_T0000329;transcript_name=hg002_chrY_paternal_199.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000329:1;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9380470	9381977	.	-	.	source_transcript=hg002_chrY_paternal_199.1;source_transcript_name=hg002_chrY_paternal_199.1;source_gene=hg002_chrY_paternal_199;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_199;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_199.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_199.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_199.1,hg002_chrY_paternal_199.1;transcript_id=HG003_chrY_T0000329;gene_id=HG003_chrY_G0000125;Parent=HG003_chrY_T0000329;transcript_name=hg002_chrY_paternal_199.1;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000329:1;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9381978	9382123	.	-	.	source_transcript=hg002_chrY_paternal_199.1;source_transcript_name=hg002_chrY_paternal_199.1;source_gene=hg002_chrY_paternal_199;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_199;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_199.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_199.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_199.1,hg002_chrY_paternal_199.1;transcript_id=HG003_chrY_T0000329;gene_id=HG003_chrY_G0000125;Parent=HG003_chrY_T0000329;transcript_name=hg002_chrY_paternal_199.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000329:2;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9382124	9382209	.	-	.	source_transcript=hg002_chrY_paternal_199.1;source_transcript_name=hg002_chrY_paternal_199.1;source_gene=hg002_chrY_paternal_199;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_199;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_199.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_199.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_199.1,hg002_chrY_paternal_199.1;transcript_id=HG003_chrY_T0000329;gene_id=HG003_chrY_G0000125;Parent=HG003_chrY_T0000329;transcript_name=hg002_chrY_paternal_199.1;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000329:2;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9382210	9382311	.	-	.	source_transcript=hg002_chrY_paternal_199.1;source_transcript_name=hg002_chrY_paternal_199.1;source_gene=hg002_chrY_paternal_199;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_199;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_199.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_199.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_199.1,hg002_chrY_paternal_199.1;transcript_id=HG003_chrY_T0000329;gene_id=HG003_chrY_G0000125;Parent=HG003_chrY_T0000329;transcript_name=hg002_chrY_paternal_199.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000329:3;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9384924	9387720	.	+	.	source_gene_common_name=TSPY10;source_gene=hg002_chrY_paternal_200;alternative_source_transcripts=hg002_chrY_paternal_200.1,hg002_chrY_paternal_200.1;gene_id=HG003_chrY_G0000126;gene_biotype=protein_coding;gene_name=TSPY10;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000126;Name=TSPY10
HG003_chrY	CAT	transcript	9384924	9387720	100	+	.	source_transcript=hg002_chrY_paternal_200.1;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.1,hg002_chrY_paternal_200.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000330;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_G0000126;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=HG003_chrY_T0000330;Name=TSPY10
HG003_chrY	CAT	exon	9384924	9385455	.	+	.	source_transcript=hg002_chrY_paternal_200.1;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.1,hg002_chrY_paternal_200.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000330;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000330;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000330:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9384970	9385455	.	+	0	source_transcript=hg002_chrY_paternal_200.1;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.1,hg002_chrY_paternal_200.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000330;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000330;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000330:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9384970	9384972	.	+	0	source_transcript=hg002_chrY_paternal_200.1;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.1,hg002_chrY_paternal_200.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000330;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000330;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000330;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9385456	9386062	.	+	.	source_transcript=hg002_chrY_paternal_200.1;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.1,hg002_chrY_paternal_200.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000330;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000330;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000330:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9386063	9386140	.	+	.	source_transcript=hg002_chrY_paternal_200.1;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.1,hg002_chrY_paternal_200.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000330;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000330;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000330:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9386063	9386140	.	+	0	source_transcript=hg002_chrY_paternal_200.1;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.1,hg002_chrY_paternal_200.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000330;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000330;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000330:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386141	9386268	.	+	.	source_transcript=hg002_chrY_paternal_200.1;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.1,hg002_chrY_paternal_200.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000330;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000330;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000330:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9386269	9386380	.	+	.	source_transcript=hg002_chrY_paternal_200.1;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.1,hg002_chrY_paternal_200.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000330;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000330;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000330:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9386269	9386380	.	+	0	source_transcript=hg002_chrY_paternal_200.1;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.1,hg002_chrY_paternal_200.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000330;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000330;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000330:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386381	9386481	.	+	.	source_transcript=hg002_chrY_paternal_200.1;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.1,hg002_chrY_paternal_200.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000330;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000330;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000330:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9386482	9386627	.	+	.	source_transcript=hg002_chrY_paternal_200.1;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.1,hg002_chrY_paternal_200.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000330;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000330;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000330:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9386482	9386627	.	+	2	source_transcript=hg002_chrY_paternal_200.1;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.1,hg002_chrY_paternal_200.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000330;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000330;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000330:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386628	9386733	.	+	.	source_transcript=hg002_chrY_paternal_200.1;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.1,hg002_chrY_paternal_200.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000330;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000330;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000330:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9386734	9386815	.	+	.	source_transcript=hg002_chrY_paternal_200.1;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.1,hg002_chrY_paternal_200.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000330;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000330;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000330:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9386734	9386815	.	+	0	source_transcript=hg002_chrY_paternal_200.1;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.1,hg002_chrY_paternal_200.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000330;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000330;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000330:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386816	9387509	.	+	.	source_transcript=hg002_chrY_paternal_200.1;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.1,hg002_chrY_paternal_200.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000330;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000330;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000330:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9387510	9387720	.	+	.	source_transcript=hg002_chrY_paternal_200.1;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.1,hg002_chrY_paternal_200.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000330;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000330;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000330:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9387510	9387532	.	+	2	source_transcript=hg002_chrY_paternal_200.1;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.1,hg002_chrY_paternal_200.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000330;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000330;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000330:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9387530	9387532	.	+	0	source_transcript=hg002_chrY_paternal_200.1;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.1,hg002_chrY_paternal_200.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000330;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000330;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000330;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9384924	9387720	100	+	.	source_transcript=hg002_chrY_paternal_200.2;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.2,hg002_chrY_paternal_200.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000331;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_G0000126;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=HG003_chrY_T0000331;Name=TSPY10
HG003_chrY	CAT	exon	9384924	9385455	.	+	.	source_transcript=hg002_chrY_paternal_200.2;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.2,hg002_chrY_paternal_200.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000331;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000331;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000331:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9384970	9385455	.	+	0	source_transcript=hg002_chrY_paternal_200.2;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.2,hg002_chrY_paternal_200.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000331;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000331;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000331:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9384970	9384972	.	+	0	source_transcript=hg002_chrY_paternal_200.2;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.2,hg002_chrY_paternal_200.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000331;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000331;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000331;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9385456	9386062	.	+	.	source_transcript=hg002_chrY_paternal_200.2;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.2,hg002_chrY_paternal_200.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000331;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000331;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000331:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9386063	9386140	.	+	.	source_transcript=hg002_chrY_paternal_200.2;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.2,hg002_chrY_paternal_200.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000331;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000331;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000331:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9386063	9386140	.	+	0	source_transcript=hg002_chrY_paternal_200.2;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.2,hg002_chrY_paternal_200.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000331;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000331;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000331:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386141	9386268	.	+	.	source_transcript=hg002_chrY_paternal_200.2;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.2,hg002_chrY_paternal_200.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000331;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000331;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000331:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9386269	9386380	.	+	.	source_transcript=hg002_chrY_paternal_200.2;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.2,hg002_chrY_paternal_200.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000331;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000331;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000331:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9386269	9386380	.	+	0	source_transcript=hg002_chrY_paternal_200.2;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.2,hg002_chrY_paternal_200.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000331;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000331;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000331:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386381	9386481	.	+	.	source_transcript=hg002_chrY_paternal_200.2;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.2,hg002_chrY_paternal_200.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000331;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000331;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000331:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9386482	9386627	.	+	.	source_transcript=hg002_chrY_paternal_200.2;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.2,hg002_chrY_paternal_200.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000331;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000331;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000331:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9386482	9386627	.	+	2	source_transcript=hg002_chrY_paternal_200.2;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.2,hg002_chrY_paternal_200.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000331;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000331;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000331:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386628	9386722	.	+	.	source_transcript=hg002_chrY_paternal_200.2;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.2,hg002_chrY_paternal_200.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000331;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000331;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000331:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9386723	9386815	.	+	.	source_transcript=hg002_chrY_paternal_200.2;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.2,hg002_chrY_paternal_200.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000331;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000331;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000331:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9386723	9386785	.	+	0	source_transcript=hg002_chrY_paternal_200.2;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.2,hg002_chrY_paternal_200.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000331;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000331;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000331:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9386783	9386785	.	+	0	source_transcript=hg002_chrY_paternal_200.2;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.2,hg002_chrY_paternal_200.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000331;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000331;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000331;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386816	9387509	.	+	.	source_transcript=hg002_chrY_paternal_200.2;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.2,hg002_chrY_paternal_200.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000331;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000331;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000331:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9387510	9387720	.	+	.	source_transcript=hg002_chrY_paternal_200.2;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.2,hg002_chrY_paternal_200.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000331;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000331;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000331:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9384924	9387720	100	+	.	source_transcript=hg002_chrY_paternal_200.3;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.3,hg002_chrY_paternal_200.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000332;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_G0000126;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=HG003_chrY_T0000332;Name=TSPY10
HG003_chrY	CAT	exon	9384924	9385455	.	+	.	source_transcript=hg002_chrY_paternal_200.3;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.3,hg002_chrY_paternal_200.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000332;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000332;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000332:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9384970	9385455	.	+	0	source_transcript=hg002_chrY_paternal_200.3;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.3,hg002_chrY_paternal_200.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000332;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000332;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000332:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9384970	9384972	.	+	0	source_transcript=hg002_chrY_paternal_200.3;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.3,hg002_chrY_paternal_200.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000332;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000332;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000332;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9385456	9386062	.	+	.	source_transcript=hg002_chrY_paternal_200.3;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.3,hg002_chrY_paternal_200.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000332;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000332;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000332:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9386063	9386140	.	+	.	source_transcript=hg002_chrY_paternal_200.3;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.3,hg002_chrY_paternal_200.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000332;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000332;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000332:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9386063	9386140	.	+	0	source_transcript=hg002_chrY_paternal_200.3;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.3,hg002_chrY_paternal_200.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000332;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000332;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000332:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386141	9386268	.	+	.	source_transcript=hg002_chrY_paternal_200.3;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.3,hg002_chrY_paternal_200.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000332;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000332;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000332:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9386269	9386380	.	+	.	source_transcript=hg002_chrY_paternal_200.3;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.3,hg002_chrY_paternal_200.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000332;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000332;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000332:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9386269	9386380	.	+	0	source_transcript=hg002_chrY_paternal_200.3;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.3,hg002_chrY_paternal_200.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000332;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000332;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000332:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386381	9386488	.	+	.	source_transcript=hg002_chrY_paternal_200.3;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.3,hg002_chrY_paternal_200.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000332;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000332;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000332:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9386489	9386627	.	+	.	source_transcript=hg002_chrY_paternal_200.3;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.3,hg002_chrY_paternal_200.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000332;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000332;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000332:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9386489	9386627	.	+	2	source_transcript=hg002_chrY_paternal_200.3;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.3,hg002_chrY_paternal_200.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000332;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000332;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000332:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386628	9386733	.	+	.	source_transcript=hg002_chrY_paternal_200.3;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.3,hg002_chrY_paternal_200.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000332;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000332;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000332:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9386734	9386815	.	+	.	source_transcript=hg002_chrY_paternal_200.3;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.3,hg002_chrY_paternal_200.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000332;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000332;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000332:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9386734	9386785	.	+	1	source_transcript=hg002_chrY_paternal_200.3;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.3,hg002_chrY_paternal_200.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000332;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000332;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000332:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9386783	9386785	.	+	0	source_transcript=hg002_chrY_paternal_200.3;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.3,hg002_chrY_paternal_200.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000332;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000332;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000332;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386816	9387509	.	+	.	source_transcript=hg002_chrY_paternal_200.3;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.3,hg002_chrY_paternal_200.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000332;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000332;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000332:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9387510	9387720	.	+	.	source_transcript=hg002_chrY_paternal_200.3;source_transcript_name=hg002_chrY_paternal_200.4;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_200.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.3,hg002_chrY_paternal_200.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000332;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000332;transcript_name=hg002_chrY_paternal_200.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000332:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9384924	9387720	1000	+	.	source_transcript=hg002_chrY_paternal_200.4;source_transcript_name=hg002_chrY_paternal_200.1;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_200.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.4,hg002_chrY_paternal_200.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000333;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_G0000126;transcript_name=hg002_chrY_paternal_200.1;gene_name=TSPY10;ID=HG003_chrY_T0000333;Name=TSPY10
HG003_chrY	CAT	exon	9384924	9385455	.	+	.	source_transcript=hg002_chrY_paternal_200.4;source_transcript_name=hg002_chrY_paternal_200.1;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_200.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.4,hg002_chrY_paternal_200.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000333;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000333;transcript_name=hg002_chrY_paternal_200.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000333:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9385456	9386062	.	+	.	source_transcript=hg002_chrY_paternal_200.4;source_transcript_name=hg002_chrY_paternal_200.1;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_200.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.4,hg002_chrY_paternal_200.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000333;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000333;transcript_name=hg002_chrY_paternal_200.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000333:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9386063	9386140	.	+	.	source_transcript=hg002_chrY_paternal_200.4;source_transcript_name=hg002_chrY_paternal_200.1;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_200.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.4,hg002_chrY_paternal_200.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000333;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000333;transcript_name=hg002_chrY_paternal_200.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000333:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386141	9386268	.	+	.	source_transcript=hg002_chrY_paternal_200.4;source_transcript_name=hg002_chrY_paternal_200.1;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_200.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.4,hg002_chrY_paternal_200.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000333;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000333;transcript_name=hg002_chrY_paternal_200.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000333:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9386269	9386380	.	+	.	source_transcript=hg002_chrY_paternal_200.4;source_transcript_name=hg002_chrY_paternal_200.1;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_200.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.4,hg002_chrY_paternal_200.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000333;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000333;transcript_name=hg002_chrY_paternal_200.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000333:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386381	9386488	.	+	.	source_transcript=hg002_chrY_paternal_200.4;source_transcript_name=hg002_chrY_paternal_200.1;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_200.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.4,hg002_chrY_paternal_200.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000333;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000333;transcript_name=hg002_chrY_paternal_200.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000333:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9386489	9386627	.	+	.	source_transcript=hg002_chrY_paternal_200.4;source_transcript_name=hg002_chrY_paternal_200.1;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_200.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.4,hg002_chrY_paternal_200.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000333;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000333;transcript_name=hg002_chrY_paternal_200.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000333:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386628	9386722	.	+	.	source_transcript=hg002_chrY_paternal_200.4;source_transcript_name=hg002_chrY_paternal_200.1;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_200.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.4,hg002_chrY_paternal_200.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000333;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000333;transcript_name=hg002_chrY_paternal_200.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000333:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9386723	9386815	.	+	.	source_transcript=hg002_chrY_paternal_200.4;source_transcript_name=hg002_chrY_paternal_200.1;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_200.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.4,hg002_chrY_paternal_200.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000333;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000333;transcript_name=hg002_chrY_paternal_200.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000333:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386816	9387509	.	+	.	source_transcript=hg002_chrY_paternal_200.4;source_transcript_name=hg002_chrY_paternal_200.1;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_200.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.4,hg002_chrY_paternal_200.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000333;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000333;transcript_name=hg002_chrY_paternal_200.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000333:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9387510	9387720	.	+	.	source_transcript=hg002_chrY_paternal_200.4;source_transcript_name=hg002_chrY_paternal_200.1;source_gene=hg002_chrY_paternal_200;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_200;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_200.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_200.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_200.4,hg002_chrY_paternal_200.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000333;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000333;transcript_name=hg002_chrY_paternal_200.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000333:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9397017	9402624	.	-	.	source_gene_common_name=FAM197Y3;source_gene=hg002_chrY_paternal_201;alternative_source_transcripts=hg002_chrY_paternal_201.1,hg002_chrY_paternal_201.1;gene_id=HG003_chrY_G0000127;gene_biotype=lncRNA;gene_name=FAM197Y3;gene_sources=liftoff;ID=HG003_chrY_G0000127;Name=FAM197Y3
HG003_chrY	CAT	transcript	9397017	9402624	1000	-	.	source_transcript=hg002_chrY_paternal_201.1;source_transcript_name=hg002_chrY_paternal_201.1;source_gene=hg002_chrY_paternal_201;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_201;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_201.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_201.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_201.1,hg002_chrY_paternal_201.1;transcript_id=HG003_chrY_T0000334;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_G0000127;transcript_name=hg002_chrY_paternal_201.1;gene_name=FAM197Y3;ID=HG003_chrY_T0000334;Name=FAM197Y3
HG003_chrY	CAT	exon	9397017	9397076	.	-	.	source_transcript=hg002_chrY_paternal_201.1;source_transcript_name=hg002_chrY_paternal_201.1;source_gene=hg002_chrY_paternal_201;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_201;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_201.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_201.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_201.1,hg002_chrY_paternal_201.1;transcript_id=HG003_chrY_T0000334;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000334;transcript_name=hg002_chrY_paternal_201.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000334:0;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9397077	9400627	.	-	.	source_transcript=hg002_chrY_paternal_201.1;source_transcript_name=hg002_chrY_paternal_201.1;source_gene=hg002_chrY_paternal_201;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_201;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_201.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_201.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_201.1,hg002_chrY_paternal_201.1;transcript_id=HG003_chrY_T0000334;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000334;transcript_name=hg002_chrY_paternal_201.1;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000334:0;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9400628	9400786	.	-	.	source_transcript=hg002_chrY_paternal_201.1;source_transcript_name=hg002_chrY_paternal_201.1;source_gene=hg002_chrY_paternal_201;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_201;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_201.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_201.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_201.1,hg002_chrY_paternal_201.1;transcript_id=HG003_chrY_T0000334;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000334;transcript_name=hg002_chrY_paternal_201.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000334:1;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9400787	9402290	.	-	.	source_transcript=hg002_chrY_paternal_201.1;source_transcript_name=hg002_chrY_paternal_201.1;source_gene=hg002_chrY_paternal_201;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_201;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_201.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_201.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_201.1,hg002_chrY_paternal_201.1;transcript_id=HG003_chrY_T0000334;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000334;transcript_name=hg002_chrY_paternal_201.1;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000334:1;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9402291	9402436	.	-	.	source_transcript=hg002_chrY_paternal_201.1;source_transcript_name=hg002_chrY_paternal_201.1;source_gene=hg002_chrY_paternal_201;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_201;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_201.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_201.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_201.1,hg002_chrY_paternal_201.1;transcript_id=HG003_chrY_T0000334;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000334;transcript_name=hg002_chrY_paternal_201.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000334:2;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9402437	9402522	.	-	.	source_transcript=hg002_chrY_paternal_201.1;source_transcript_name=hg002_chrY_paternal_201.1;source_gene=hg002_chrY_paternal_201;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_201;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_201.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_201.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_201.1,hg002_chrY_paternal_201.1;transcript_id=HG003_chrY_T0000334;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000334;transcript_name=hg002_chrY_paternal_201.1;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000334:2;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9402523	9402624	.	-	.	source_transcript=hg002_chrY_paternal_201.1;source_transcript_name=hg002_chrY_paternal_201.1;source_gene=hg002_chrY_paternal_201;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_201;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_201.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_201.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_201.1,hg002_chrY_paternal_201.1;transcript_id=HG003_chrY_T0000334;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000334;transcript_name=hg002_chrY_paternal_201.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000334:3;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9405239	9408053	.	+	.	source_gene_common_name=TSPY9;source_gene=hg002_chrY_paternal_202;alternative_source_transcripts=hg002_chrY_paternal_202.1,hg002_chrY_paternal_202.1;gene_id=HG003_chrY_G0000128;gene_biotype=protein_coding;gene_name=TSPY9;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000128;Name=TSPY9
HG003_chrY	CAT	transcript	9405239	9408053	100	+	.	source_transcript=hg002_chrY_paternal_202.1;source_transcript_name=hg002_chrY_paternal_202.2;source_gene=hg002_chrY_paternal_202;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_202;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_202.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_202.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_202.1,hg002_chrY_paternal_202.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000335;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_G0000128;transcript_name=hg002_chrY_paternal_202.2;gene_name=TSPY9;ID=HG003_chrY_T0000335;Name=TSPY9
HG003_chrY	CAT	exon	9405239	9405788	.	+	.	source_transcript=hg002_chrY_paternal_202.1;source_transcript_name=hg002_chrY_paternal_202.2;source_gene=hg002_chrY_paternal_202;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_202;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_202.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_202.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_202.1,hg002_chrY_paternal_202.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000335;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_T0000335;transcript_name=hg002_chrY_paternal_202.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000335:0;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9405285	9405788	.	+	0	source_transcript=hg002_chrY_paternal_202.1;source_transcript_name=hg002_chrY_paternal_202.2;source_gene=hg002_chrY_paternal_202;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_202;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_202.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_202.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_202.1,hg002_chrY_paternal_202.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000335;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_T0000335;transcript_name=hg002_chrY_paternal_202.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000335:0;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9405285	9405287	.	+	0	source_transcript=hg002_chrY_paternal_202.1;source_transcript_name=hg002_chrY_paternal_202.2;source_gene=hg002_chrY_paternal_202;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_202;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_202.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_202.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_202.1,hg002_chrY_paternal_202.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000335;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_T0000335;transcript_name=hg002_chrY_paternal_202.2;gene_name=TSPY9;ID=start_codon:HG003_chrY_T0000335;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9405789	9406395	.	+	.	source_transcript=hg002_chrY_paternal_202.1;source_transcript_name=hg002_chrY_paternal_202.2;source_gene=hg002_chrY_paternal_202;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_202;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_202.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_202.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_202.1,hg002_chrY_paternal_202.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000335;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_T0000335;transcript_name=hg002_chrY_paternal_202.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000335:0;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9406396	9406473	.	+	.	source_transcript=hg002_chrY_paternal_202.1;source_transcript_name=hg002_chrY_paternal_202.2;source_gene=hg002_chrY_paternal_202;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_202;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_202.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_202.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_202.1,hg002_chrY_paternal_202.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000335;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_T0000335;transcript_name=hg002_chrY_paternal_202.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000335:1;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9406396	9406473	.	+	0	source_transcript=hg002_chrY_paternal_202.1;source_transcript_name=hg002_chrY_paternal_202.2;source_gene=hg002_chrY_paternal_202;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_202;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_202.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_202.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_202.1,hg002_chrY_paternal_202.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000335;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_T0000335;transcript_name=hg002_chrY_paternal_202.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000335:1;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9406474	9406601	.	+	.	source_transcript=hg002_chrY_paternal_202.1;source_transcript_name=hg002_chrY_paternal_202.2;source_gene=hg002_chrY_paternal_202;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_202;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_202.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_202.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_202.1,hg002_chrY_paternal_202.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000335;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_T0000335;transcript_name=hg002_chrY_paternal_202.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000335:1;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9406602	9406713	.	+	.	source_transcript=hg002_chrY_paternal_202.1;source_transcript_name=hg002_chrY_paternal_202.2;source_gene=hg002_chrY_paternal_202;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_202;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_202.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_202.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_202.1,hg002_chrY_paternal_202.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000335;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_T0000335;transcript_name=hg002_chrY_paternal_202.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000335:2;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9406602	9406713	.	+	0	source_transcript=hg002_chrY_paternal_202.1;source_transcript_name=hg002_chrY_paternal_202.2;source_gene=hg002_chrY_paternal_202;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_202;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_202.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_202.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_202.1,hg002_chrY_paternal_202.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000335;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_T0000335;transcript_name=hg002_chrY_paternal_202.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000335:2;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9406714	9406814	.	+	.	source_transcript=hg002_chrY_paternal_202.1;source_transcript_name=hg002_chrY_paternal_202.2;source_gene=hg002_chrY_paternal_202;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_202;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_202.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_202.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_202.1,hg002_chrY_paternal_202.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000335;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_T0000335;transcript_name=hg002_chrY_paternal_202.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000335:2;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9406815	9406960	.	+	.	source_transcript=hg002_chrY_paternal_202.1;source_transcript_name=hg002_chrY_paternal_202.2;source_gene=hg002_chrY_paternal_202;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_202;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_202.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_202.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_202.1,hg002_chrY_paternal_202.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000335;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_T0000335;transcript_name=hg002_chrY_paternal_202.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000335:3;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9406815	9406960	.	+	2	source_transcript=hg002_chrY_paternal_202.1;source_transcript_name=hg002_chrY_paternal_202.2;source_gene=hg002_chrY_paternal_202;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_202;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_202.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_202.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_202.1,hg002_chrY_paternal_202.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000335;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_T0000335;transcript_name=hg002_chrY_paternal_202.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000335:3;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9406961	9407066	.	+	.	source_transcript=hg002_chrY_paternal_202.1;source_transcript_name=hg002_chrY_paternal_202.2;source_gene=hg002_chrY_paternal_202;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_202;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_202.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_202.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_202.1,hg002_chrY_paternal_202.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000335;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_T0000335;transcript_name=hg002_chrY_paternal_202.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000335:3;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9407067	9407148	.	+	.	source_transcript=hg002_chrY_paternal_202.1;source_transcript_name=hg002_chrY_paternal_202.2;source_gene=hg002_chrY_paternal_202;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_202;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_202.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_202.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_202.1,hg002_chrY_paternal_202.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000335;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_T0000335;transcript_name=hg002_chrY_paternal_202.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000335:4;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9407067	9407148	.	+	0	source_transcript=hg002_chrY_paternal_202.1;source_transcript_name=hg002_chrY_paternal_202.2;source_gene=hg002_chrY_paternal_202;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_202;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_202.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_202.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_202.1,hg002_chrY_paternal_202.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000335;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_T0000335;transcript_name=hg002_chrY_paternal_202.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000335:4;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9407149	9407842	.	+	.	source_transcript=hg002_chrY_paternal_202.1;source_transcript_name=hg002_chrY_paternal_202.2;source_gene=hg002_chrY_paternal_202;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_202;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_202.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_202.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_202.1,hg002_chrY_paternal_202.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000335;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_T0000335;transcript_name=hg002_chrY_paternal_202.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000335:4;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9407843	9408053	.	+	.	source_transcript=hg002_chrY_paternal_202.1;source_transcript_name=hg002_chrY_paternal_202.2;source_gene=hg002_chrY_paternal_202;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_202;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_202.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_202.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_202.1,hg002_chrY_paternal_202.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000335;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_T0000335;transcript_name=hg002_chrY_paternal_202.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000335:5;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9407843	9407865	.	+	2	source_transcript=hg002_chrY_paternal_202.1;source_transcript_name=hg002_chrY_paternal_202.2;source_gene=hg002_chrY_paternal_202;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_202;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_202.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_202.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_202.1,hg002_chrY_paternal_202.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000335;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_T0000335;transcript_name=hg002_chrY_paternal_202.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000335:5;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9407863	9407865	.	+	0	source_transcript=hg002_chrY_paternal_202.1;source_transcript_name=hg002_chrY_paternal_202.2;source_gene=hg002_chrY_paternal_202;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_202;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_202.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_202.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_202.1,hg002_chrY_paternal_202.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000335;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_T0000335;transcript_name=hg002_chrY_paternal_202.2;gene_name=TSPY9;ID=stop_codon:HG003_chrY_T0000335;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9405239	9408053	100	+	.	source_transcript=hg002_chrY_paternal_202.2;source_transcript_name=hg002_chrY_paternal_202.2;source_gene=hg002_chrY_paternal_202;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_202;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_202.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_202.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_202.2,hg002_chrY_paternal_202.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000336;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_G0000128;transcript_name=hg002_chrY_paternal_202.2;gene_name=TSPY9;ID=HG003_chrY_T0000336;Name=TSPY9
HG003_chrY	CAT	exon	9405239	9405788	.	+	.	source_transcript=hg002_chrY_paternal_202.2;source_transcript_name=hg002_chrY_paternal_202.2;source_gene=hg002_chrY_paternal_202;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_202;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_202.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_202.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_202.2,hg002_chrY_paternal_202.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000336;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_T0000336;transcript_name=hg002_chrY_paternal_202.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000336:0;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9405285	9405788	.	+	0	source_transcript=hg002_chrY_paternal_202.2;source_transcript_name=hg002_chrY_paternal_202.2;source_gene=hg002_chrY_paternal_202;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_202;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_202.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_202.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_202.2,hg002_chrY_paternal_202.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000336;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_T0000336;transcript_name=hg002_chrY_paternal_202.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000336:0;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9405285	9405287	.	+	0	source_transcript=hg002_chrY_paternal_202.2;source_transcript_name=hg002_chrY_paternal_202.2;source_gene=hg002_chrY_paternal_202;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_202;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_202.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_202.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_202.2,hg002_chrY_paternal_202.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000336;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_T0000336;transcript_name=hg002_chrY_paternal_202.2;gene_name=TSPY9;ID=start_codon:HG003_chrY_T0000336;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9405789	9406395	.	+	.	source_transcript=hg002_chrY_paternal_202.2;source_transcript_name=hg002_chrY_paternal_202.2;source_gene=hg002_chrY_paternal_202;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_202;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_202.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_202.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_202.2,hg002_chrY_paternal_202.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000336;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_T0000336;transcript_name=hg002_chrY_paternal_202.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000336:0;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9406396	9406473	.	+	.	source_transcript=hg002_chrY_paternal_202.2;source_transcript_name=hg002_chrY_paternal_202.2;source_gene=hg002_chrY_paternal_202;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_202;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_202.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_202.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_202.2,hg002_chrY_paternal_202.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000336;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_T0000336;transcript_name=hg002_chrY_paternal_202.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000336:1;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9406396	9406473	.	+	0	source_transcript=hg002_chrY_paternal_202.2;source_transcript_name=hg002_chrY_paternal_202.2;source_gene=hg002_chrY_paternal_202;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_202;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_202.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_202.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_202.2,hg002_chrY_paternal_202.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000336;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_T0000336;transcript_name=hg002_chrY_paternal_202.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000336:1;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9406474	9406601	.	+	.	source_transcript=hg002_chrY_paternal_202.2;source_transcript_name=hg002_chrY_paternal_202.2;source_gene=hg002_chrY_paternal_202;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_202;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_202.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_202.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_202.2,hg002_chrY_paternal_202.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000336;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_T0000336;transcript_name=hg002_chrY_paternal_202.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000336:1;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9406602	9406713	.	+	.	source_transcript=hg002_chrY_paternal_202.2;source_transcript_name=hg002_chrY_paternal_202.2;source_gene=hg002_chrY_paternal_202;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_202;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_202.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_202.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_202.2,hg002_chrY_paternal_202.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000336;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_T0000336;transcript_name=hg002_chrY_paternal_202.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000336:2;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9406602	9406713	.	+	0	source_transcript=hg002_chrY_paternal_202.2;source_transcript_name=hg002_chrY_paternal_202.2;source_gene=hg002_chrY_paternal_202;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_202;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_202.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_202.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_202.2,hg002_chrY_paternal_202.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000336;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_T0000336;transcript_name=hg002_chrY_paternal_202.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000336:2;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9406714	9406814	.	+	.	source_transcript=hg002_chrY_paternal_202.2;source_transcript_name=hg002_chrY_paternal_202.2;source_gene=hg002_chrY_paternal_202;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_202;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_202.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_202.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_202.2,hg002_chrY_paternal_202.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000336;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_T0000336;transcript_name=hg002_chrY_paternal_202.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000336:2;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9406815	9406960	.	+	.	source_transcript=hg002_chrY_paternal_202.2;source_transcript_name=hg002_chrY_paternal_202.2;source_gene=hg002_chrY_paternal_202;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_202;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_202.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_202.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_202.2,hg002_chrY_paternal_202.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000336;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_T0000336;transcript_name=hg002_chrY_paternal_202.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000336:3;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9406815	9406960	.	+	2	source_transcript=hg002_chrY_paternal_202.2;source_transcript_name=hg002_chrY_paternal_202.2;source_gene=hg002_chrY_paternal_202;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_202;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_202.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_202.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_202.2,hg002_chrY_paternal_202.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000336;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_T0000336;transcript_name=hg002_chrY_paternal_202.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000336:3;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9406961	9407055	.	+	.	source_transcript=hg002_chrY_paternal_202.2;source_transcript_name=hg002_chrY_paternal_202.2;source_gene=hg002_chrY_paternal_202;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_202;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_202.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_202.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_202.2,hg002_chrY_paternal_202.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000336;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_T0000336;transcript_name=hg002_chrY_paternal_202.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000336:3;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9407056	9407148	.	+	.	source_transcript=hg002_chrY_paternal_202.2;source_transcript_name=hg002_chrY_paternal_202.2;source_gene=hg002_chrY_paternal_202;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_202;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_202.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_202.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_202.2,hg002_chrY_paternal_202.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000336;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_T0000336;transcript_name=hg002_chrY_paternal_202.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000336:4;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9407056	9407118	.	+	0	source_transcript=hg002_chrY_paternal_202.2;source_transcript_name=hg002_chrY_paternal_202.2;source_gene=hg002_chrY_paternal_202;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_202;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_202.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_202.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_202.2,hg002_chrY_paternal_202.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000336;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_T0000336;transcript_name=hg002_chrY_paternal_202.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000336:4;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9407116	9407118	.	+	0	source_transcript=hg002_chrY_paternal_202.2;source_transcript_name=hg002_chrY_paternal_202.2;source_gene=hg002_chrY_paternal_202;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_202;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_202.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_202.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_202.2,hg002_chrY_paternal_202.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000336;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_T0000336;transcript_name=hg002_chrY_paternal_202.2;gene_name=TSPY9;ID=stop_codon:HG003_chrY_T0000336;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9407149	9407842	.	+	.	source_transcript=hg002_chrY_paternal_202.2;source_transcript_name=hg002_chrY_paternal_202.2;source_gene=hg002_chrY_paternal_202;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_202;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_202.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_202.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_202.2,hg002_chrY_paternal_202.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000336;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_T0000336;transcript_name=hg002_chrY_paternal_202.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000336:4;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9407843	9408053	.	+	.	source_transcript=hg002_chrY_paternal_202.2;source_transcript_name=hg002_chrY_paternal_202.2;source_gene=hg002_chrY_paternal_202;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_202;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_202.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_202.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_202.2,hg002_chrY_paternal_202.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000336;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_T0000336;transcript_name=hg002_chrY_paternal_202.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000336:5;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9417307	9422912	.	-	.	source_gene_common_name=FAM197Y7;source_gene=hg002_chrY_paternal_203;alternative_source_transcripts=hg002_chrY_paternal_203.1,hg002_chrY_paternal_203.1;gene_id=HG003_chrY_G0000129;gene_biotype=lncRNA;gene_name=FAM197Y7;gene_sources=liftoff;ID=HG003_chrY_G0000129;Name=FAM197Y7
HG003_chrY	CAT	transcript	9417307	9422912	1000	-	.	source_transcript=hg002_chrY_paternal_203.1;source_transcript_name=hg002_chrY_paternal_203.1;source_gene=hg002_chrY_paternal_203;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_203;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_203.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_203.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;alternative_source_transcripts=hg002_chrY_paternal_203.1,hg002_chrY_paternal_203.1;transcript_id=HG003_chrY_T0000337;gene_id=HG003_chrY_G0000129;Parent=HG003_chrY_G0000129;transcript_name=hg002_chrY_paternal_203.1;gene_name=FAM197Y7;ID=HG003_chrY_T0000337;Name=FAM197Y7
HG003_chrY	CAT	exon	9417307	9417366	.	-	.	source_transcript=hg002_chrY_paternal_203.1;source_transcript_name=hg002_chrY_paternal_203.1;source_gene=hg002_chrY_paternal_203;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_203;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_203.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_203.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;alternative_source_transcripts=hg002_chrY_paternal_203.1,hg002_chrY_paternal_203.1;transcript_id=HG003_chrY_T0000337;gene_id=HG003_chrY_G0000129;Parent=HG003_chrY_T0000337;transcript_name=hg002_chrY_paternal_203.1;gene_name=FAM197Y7;ID=exon:HG003_chrY_T0000337:0;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9417367	9420915	.	-	.	source_transcript=hg002_chrY_paternal_203.1;source_transcript_name=hg002_chrY_paternal_203.1;source_gene=hg002_chrY_paternal_203;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_203;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_203.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_203.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;alternative_source_transcripts=hg002_chrY_paternal_203.1,hg002_chrY_paternal_203.1;transcript_id=HG003_chrY_T0000337;gene_id=HG003_chrY_G0000129;Parent=HG003_chrY_T0000337;transcript_name=hg002_chrY_paternal_203.1;gene_name=FAM197Y7;ID=intron:HG003_chrY_T0000337:0;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9420916	9421074	.	-	.	source_transcript=hg002_chrY_paternal_203.1;source_transcript_name=hg002_chrY_paternal_203.1;source_gene=hg002_chrY_paternal_203;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_203;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_203.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_203.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;alternative_source_transcripts=hg002_chrY_paternal_203.1,hg002_chrY_paternal_203.1;transcript_id=HG003_chrY_T0000337;gene_id=HG003_chrY_G0000129;Parent=HG003_chrY_T0000337;transcript_name=hg002_chrY_paternal_203.1;gene_name=FAM197Y7;ID=exon:HG003_chrY_T0000337:1;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9421075	9422578	.	-	.	source_transcript=hg002_chrY_paternal_203.1;source_transcript_name=hg002_chrY_paternal_203.1;source_gene=hg002_chrY_paternal_203;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_203;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_203.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_203.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;alternative_source_transcripts=hg002_chrY_paternal_203.1,hg002_chrY_paternal_203.1;transcript_id=HG003_chrY_T0000337;gene_id=HG003_chrY_G0000129;Parent=HG003_chrY_T0000337;transcript_name=hg002_chrY_paternal_203.1;gene_name=FAM197Y7;ID=intron:HG003_chrY_T0000337:1;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9422579	9422724	.	-	.	source_transcript=hg002_chrY_paternal_203.1;source_transcript_name=hg002_chrY_paternal_203.1;source_gene=hg002_chrY_paternal_203;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_203;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_203.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_203.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;alternative_source_transcripts=hg002_chrY_paternal_203.1,hg002_chrY_paternal_203.1;transcript_id=HG003_chrY_T0000337;gene_id=HG003_chrY_G0000129;Parent=HG003_chrY_T0000337;transcript_name=hg002_chrY_paternal_203.1;gene_name=FAM197Y7;ID=exon:HG003_chrY_T0000337:2;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9422725	9422810	.	-	.	source_transcript=hg002_chrY_paternal_203.1;source_transcript_name=hg002_chrY_paternal_203.1;source_gene=hg002_chrY_paternal_203;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_203;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_203.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_203.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;alternative_source_transcripts=hg002_chrY_paternal_203.1,hg002_chrY_paternal_203.1;transcript_id=HG003_chrY_T0000337;gene_id=HG003_chrY_G0000129;Parent=HG003_chrY_T0000337;transcript_name=hg002_chrY_paternal_203.1;gene_name=FAM197Y7;ID=intron:HG003_chrY_T0000337:2;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9422811	9422912	.	-	.	source_transcript=hg002_chrY_paternal_203.1;source_transcript_name=hg002_chrY_paternal_203.1;source_gene=hg002_chrY_paternal_203;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_203;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_203.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_203.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;alternative_source_transcripts=hg002_chrY_paternal_203.1,hg002_chrY_paternal_203.1;transcript_id=HG003_chrY_T0000337;gene_id=HG003_chrY_G0000129;Parent=HG003_chrY_T0000337;transcript_name=hg002_chrY_paternal_203.1;gene_name=FAM197Y7;ID=exon:HG003_chrY_T0000337:3;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9425525	9428321	.	+	.	source_gene_common_name=TSPY3;source_gene=hg002_chrY_paternal_204;alternative_source_transcripts=hg002_chrY_paternal_204.1,hg002_chrY_paternal_204.1;gene_id=HG003_chrY_G0000130;gene_biotype=protein_coding;gene_name=TSPY3;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000130;Name=TSPY3
HG003_chrY	CAT	transcript	9425525	9428321	100	+	.	source_transcript=hg002_chrY_paternal_204.1;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.1,hg002_chrY_paternal_204.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000338;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_G0000130;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=HG003_chrY_T0000338;Name=TSPY3
HG003_chrY	CAT	exon	9425525	9426056	.	+	.	source_transcript=hg002_chrY_paternal_204.1;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.1,hg002_chrY_paternal_204.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000338;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000338;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000338:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9425571	9426056	.	+	0	source_transcript=hg002_chrY_paternal_204.1;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.1,hg002_chrY_paternal_204.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000338;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000338;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000338:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9425571	9425573	.	+	0	source_transcript=hg002_chrY_paternal_204.1;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.1,hg002_chrY_paternal_204.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000338;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000338;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000338;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9426057	9426663	.	+	.	source_transcript=hg002_chrY_paternal_204.1;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.1,hg002_chrY_paternal_204.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000338;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000338;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000338:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9426664	9426741	.	+	.	source_transcript=hg002_chrY_paternal_204.1;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.1,hg002_chrY_paternal_204.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000338;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000338;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000338:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9426664	9426741	.	+	0	source_transcript=hg002_chrY_paternal_204.1;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.1,hg002_chrY_paternal_204.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000338;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000338;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000338:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9426742	9426869	.	+	.	source_transcript=hg002_chrY_paternal_204.1;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.1,hg002_chrY_paternal_204.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000338;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000338;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000338:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9426870	9426981	.	+	.	source_transcript=hg002_chrY_paternal_204.1;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.1,hg002_chrY_paternal_204.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000338;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000338;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000338:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9426870	9426981	.	+	0	source_transcript=hg002_chrY_paternal_204.1;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.1,hg002_chrY_paternal_204.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000338;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000338;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000338:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9426982	9427082	.	+	.	source_transcript=hg002_chrY_paternal_204.1;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.1,hg002_chrY_paternal_204.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000338;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000338;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000338:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9427083	9427228	.	+	.	source_transcript=hg002_chrY_paternal_204.1;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.1,hg002_chrY_paternal_204.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000338;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000338;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000338:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9427083	9427228	.	+	2	source_transcript=hg002_chrY_paternal_204.1;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.1,hg002_chrY_paternal_204.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000338;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000338;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000338:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9427229	9427334	.	+	.	source_transcript=hg002_chrY_paternal_204.1;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.1,hg002_chrY_paternal_204.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000338;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000338;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000338:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9427335	9427416	.	+	.	source_transcript=hg002_chrY_paternal_204.1;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.1,hg002_chrY_paternal_204.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000338;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000338;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000338:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9427335	9427416	.	+	0	source_transcript=hg002_chrY_paternal_204.1;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.1,hg002_chrY_paternal_204.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000338;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000338;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000338:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9427417	9428110	.	+	.	source_transcript=hg002_chrY_paternal_204.1;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.1,hg002_chrY_paternal_204.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000338;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000338;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000338:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9428111	9428321	.	+	.	source_transcript=hg002_chrY_paternal_204.1;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.1,hg002_chrY_paternal_204.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000338;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000338;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000338:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9428111	9428133	.	+	2	source_transcript=hg002_chrY_paternal_204.1;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.1,hg002_chrY_paternal_204.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000338;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000338;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000338:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9428131	9428133	.	+	0	source_transcript=hg002_chrY_paternal_204.1;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.1,hg002_chrY_paternal_204.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000338;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000338;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000338;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9425525	9428321	100	+	.	source_transcript=hg002_chrY_paternal_204.2;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.2,hg002_chrY_paternal_204.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000339;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_G0000130;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=HG003_chrY_T0000339;Name=TSPY3
HG003_chrY	CAT	exon	9425525	9426056	.	+	.	source_transcript=hg002_chrY_paternal_204.2;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.2,hg002_chrY_paternal_204.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000339;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000339;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000339:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9425571	9426056	.	+	0	source_transcript=hg002_chrY_paternal_204.2;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.2,hg002_chrY_paternal_204.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000339;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000339;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000339:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9425571	9425573	.	+	0	source_transcript=hg002_chrY_paternal_204.2;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.2,hg002_chrY_paternal_204.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000339;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000339;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000339;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9426057	9426663	.	+	.	source_transcript=hg002_chrY_paternal_204.2;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.2,hg002_chrY_paternal_204.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000339;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000339;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000339:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9426664	9426741	.	+	.	source_transcript=hg002_chrY_paternal_204.2;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.2,hg002_chrY_paternal_204.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000339;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000339;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000339:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9426664	9426741	.	+	0	source_transcript=hg002_chrY_paternal_204.2;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.2,hg002_chrY_paternal_204.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000339;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000339;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000339:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9426742	9426869	.	+	.	source_transcript=hg002_chrY_paternal_204.2;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.2,hg002_chrY_paternal_204.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000339;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000339;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000339:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9426870	9426981	.	+	.	source_transcript=hg002_chrY_paternal_204.2;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.2,hg002_chrY_paternal_204.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000339;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000339;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000339:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9426870	9426981	.	+	0	source_transcript=hg002_chrY_paternal_204.2;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.2,hg002_chrY_paternal_204.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000339;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000339;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000339:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9426982	9427082	.	+	.	source_transcript=hg002_chrY_paternal_204.2;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.2,hg002_chrY_paternal_204.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000339;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000339;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000339:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9427083	9427228	.	+	.	source_transcript=hg002_chrY_paternal_204.2;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.2,hg002_chrY_paternal_204.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000339;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000339;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000339:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9427083	9427228	.	+	2	source_transcript=hg002_chrY_paternal_204.2;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.2,hg002_chrY_paternal_204.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000339;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000339;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000339:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9427229	9427323	.	+	.	source_transcript=hg002_chrY_paternal_204.2;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.2,hg002_chrY_paternal_204.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000339;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000339;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000339:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9427324	9427416	.	+	.	source_transcript=hg002_chrY_paternal_204.2;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.2,hg002_chrY_paternal_204.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000339;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000339;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000339:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9427324	9427386	.	+	0	source_transcript=hg002_chrY_paternal_204.2;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.2,hg002_chrY_paternal_204.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000339;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000339;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000339:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9427384	9427386	.	+	0	source_transcript=hg002_chrY_paternal_204.2;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.2,hg002_chrY_paternal_204.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000339;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000339;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000339;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9427417	9428110	.	+	.	source_transcript=hg002_chrY_paternal_204.2;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.2,hg002_chrY_paternal_204.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000339;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000339;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000339:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9428111	9428321	.	+	.	source_transcript=hg002_chrY_paternal_204.2;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.2,hg002_chrY_paternal_204.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000339;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000339;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000339:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9425525	9428321	100	+	.	source_transcript=hg002_chrY_paternal_204.3;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.3,hg002_chrY_paternal_204.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000340;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_G0000130;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=HG003_chrY_T0000340;Name=TSPY3
HG003_chrY	CAT	exon	9425525	9426056	.	+	.	source_transcript=hg002_chrY_paternal_204.3;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.3,hg002_chrY_paternal_204.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000340;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000340;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000340:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9425571	9426056	.	+	0	source_transcript=hg002_chrY_paternal_204.3;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.3,hg002_chrY_paternal_204.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000340;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000340;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000340:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9425571	9425573	.	+	0	source_transcript=hg002_chrY_paternal_204.3;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.3,hg002_chrY_paternal_204.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000340;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000340;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000340;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9426057	9426663	.	+	.	source_transcript=hg002_chrY_paternal_204.3;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.3,hg002_chrY_paternal_204.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000340;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000340;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000340:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9426664	9426741	.	+	.	source_transcript=hg002_chrY_paternal_204.3;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.3,hg002_chrY_paternal_204.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000340;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000340;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000340:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9426664	9426741	.	+	0	source_transcript=hg002_chrY_paternal_204.3;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.3,hg002_chrY_paternal_204.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000340;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000340;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000340:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9426742	9426869	.	+	.	source_transcript=hg002_chrY_paternal_204.3;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.3,hg002_chrY_paternal_204.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000340;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000340;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000340:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9426870	9426981	.	+	.	source_transcript=hg002_chrY_paternal_204.3;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.3,hg002_chrY_paternal_204.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000340;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000340;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000340:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9426870	9426981	.	+	0	source_transcript=hg002_chrY_paternal_204.3;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.3,hg002_chrY_paternal_204.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000340;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000340;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000340:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9426982	9427089	.	+	.	source_transcript=hg002_chrY_paternal_204.3;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.3,hg002_chrY_paternal_204.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000340;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000340;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000340:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9427090	9427228	.	+	.	source_transcript=hg002_chrY_paternal_204.3;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.3,hg002_chrY_paternal_204.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000340;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000340;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000340:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9427090	9427228	.	+	2	source_transcript=hg002_chrY_paternal_204.3;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.3,hg002_chrY_paternal_204.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000340;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000340;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000340:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9427229	9427334	.	+	.	source_transcript=hg002_chrY_paternal_204.3;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.3,hg002_chrY_paternal_204.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000340;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000340;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000340:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9427335	9427416	.	+	.	source_transcript=hg002_chrY_paternal_204.3;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.3,hg002_chrY_paternal_204.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000340;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000340;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000340:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9427335	9427386	.	+	1	source_transcript=hg002_chrY_paternal_204.3;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.3,hg002_chrY_paternal_204.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000340;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000340;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000340:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9427384	9427386	.	+	0	source_transcript=hg002_chrY_paternal_204.3;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.3,hg002_chrY_paternal_204.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000340;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000340;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000340;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9427417	9428110	.	+	.	source_transcript=hg002_chrY_paternal_204.3;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.3,hg002_chrY_paternal_204.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000340;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000340;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000340:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9428111	9428321	.	+	.	source_transcript=hg002_chrY_paternal_204.3;source_transcript_name=hg002_chrY_paternal_204.4;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_204.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.3,hg002_chrY_paternal_204.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000340;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000340;transcript_name=hg002_chrY_paternal_204.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000340:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9425525	9428321	1000	+	.	source_transcript=hg002_chrY_paternal_204.4;source_transcript_name=hg002_chrY_paternal_204.1;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_204.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.4,hg002_chrY_paternal_204.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000341;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_G0000130;transcript_name=hg002_chrY_paternal_204.1;gene_name=TSPY3;ID=HG003_chrY_T0000341;Name=TSPY3
HG003_chrY	CAT	exon	9425525	9426056	.	+	.	source_transcript=hg002_chrY_paternal_204.4;source_transcript_name=hg002_chrY_paternal_204.1;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_204.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.4,hg002_chrY_paternal_204.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000341;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000341;transcript_name=hg002_chrY_paternal_204.1;gene_name=TSPY3;ID=exon:HG003_chrY_T0000341:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9426057	9426663	.	+	.	source_transcript=hg002_chrY_paternal_204.4;source_transcript_name=hg002_chrY_paternal_204.1;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_204.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.4,hg002_chrY_paternal_204.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000341;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000341;transcript_name=hg002_chrY_paternal_204.1;gene_name=TSPY3;ID=intron:HG003_chrY_T0000341:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9426664	9426741	.	+	.	source_transcript=hg002_chrY_paternal_204.4;source_transcript_name=hg002_chrY_paternal_204.1;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_204.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.4,hg002_chrY_paternal_204.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000341;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000341;transcript_name=hg002_chrY_paternal_204.1;gene_name=TSPY3;ID=exon:HG003_chrY_T0000341:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9426742	9426869	.	+	.	source_transcript=hg002_chrY_paternal_204.4;source_transcript_name=hg002_chrY_paternal_204.1;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_204.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.4,hg002_chrY_paternal_204.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000341;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000341;transcript_name=hg002_chrY_paternal_204.1;gene_name=TSPY3;ID=intron:HG003_chrY_T0000341:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9426870	9426981	.	+	.	source_transcript=hg002_chrY_paternal_204.4;source_transcript_name=hg002_chrY_paternal_204.1;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_204.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.4,hg002_chrY_paternal_204.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000341;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000341;transcript_name=hg002_chrY_paternal_204.1;gene_name=TSPY3;ID=exon:HG003_chrY_T0000341:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9426982	9427089	.	+	.	source_transcript=hg002_chrY_paternal_204.4;source_transcript_name=hg002_chrY_paternal_204.1;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_204.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.4,hg002_chrY_paternal_204.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000341;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000341;transcript_name=hg002_chrY_paternal_204.1;gene_name=TSPY3;ID=intron:HG003_chrY_T0000341:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9427090	9427228	.	+	.	source_transcript=hg002_chrY_paternal_204.4;source_transcript_name=hg002_chrY_paternal_204.1;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_204.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.4,hg002_chrY_paternal_204.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000341;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000341;transcript_name=hg002_chrY_paternal_204.1;gene_name=TSPY3;ID=exon:HG003_chrY_T0000341:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9427229	9427323	.	+	.	source_transcript=hg002_chrY_paternal_204.4;source_transcript_name=hg002_chrY_paternal_204.1;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_204.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.4,hg002_chrY_paternal_204.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000341;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000341;transcript_name=hg002_chrY_paternal_204.1;gene_name=TSPY3;ID=intron:HG003_chrY_T0000341:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9427324	9427416	.	+	.	source_transcript=hg002_chrY_paternal_204.4;source_transcript_name=hg002_chrY_paternal_204.1;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_204.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.4,hg002_chrY_paternal_204.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000341;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000341;transcript_name=hg002_chrY_paternal_204.1;gene_name=TSPY3;ID=exon:HG003_chrY_T0000341:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9427417	9428110	.	+	.	source_transcript=hg002_chrY_paternal_204.4;source_transcript_name=hg002_chrY_paternal_204.1;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_204.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.4,hg002_chrY_paternal_204.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000341;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000341;transcript_name=hg002_chrY_paternal_204.1;gene_name=TSPY3;ID=intron:HG003_chrY_T0000341:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9428111	9428321	.	+	.	source_transcript=hg002_chrY_paternal_204.4;source_transcript_name=hg002_chrY_paternal_204.1;source_gene=hg002_chrY_paternal_204;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_204;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_204.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_204.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_204.4,hg002_chrY_paternal_204.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000341;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000341;transcript_name=hg002_chrY_paternal_204.1;gene_name=TSPY3;ID=exon:HG003_chrY_T0000341:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9437591	9443196	.	-	.	source_gene_common_name=FAM197Y5;source_gene=hg002_chrY_paternal_205;alternative_source_transcripts=hg002_chrY_paternal_205.1,hg002_chrY_paternal_205.1;gene_id=HG003_chrY_G0000131;gene_biotype=lncRNA;gene_name=FAM197Y5;gene_sources=liftoff;ID=HG003_chrY_G0000131;Name=FAM197Y5
HG003_chrY	CAT	transcript	9437591	9443196	1000	-	.	source_transcript=hg002_chrY_paternal_205.1;source_transcript_name=hg002_chrY_paternal_205.1;source_gene=hg002_chrY_paternal_205;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_205;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_205.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_205.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;alternative_source_transcripts=hg002_chrY_paternal_205.1,hg002_chrY_paternal_205.1;transcript_id=HG003_chrY_T0000342;gene_id=HG003_chrY_G0000131;Parent=HG003_chrY_G0000131;transcript_name=hg002_chrY_paternal_205.1;gene_name=FAM197Y5;ID=HG003_chrY_T0000342;Name=FAM197Y5
HG003_chrY	CAT	exon	9437591	9437650	.	-	.	source_transcript=hg002_chrY_paternal_205.1;source_transcript_name=hg002_chrY_paternal_205.1;source_gene=hg002_chrY_paternal_205;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_205;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_205.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_205.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;alternative_source_transcripts=hg002_chrY_paternal_205.1,hg002_chrY_paternal_205.1;transcript_id=HG003_chrY_T0000342;gene_id=HG003_chrY_G0000131;Parent=HG003_chrY_T0000342;transcript_name=hg002_chrY_paternal_205.1;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000342:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9437651	9441205	.	-	.	source_transcript=hg002_chrY_paternal_205.1;source_transcript_name=hg002_chrY_paternal_205.1;source_gene=hg002_chrY_paternal_205;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_205;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_205.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_205.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;alternative_source_transcripts=hg002_chrY_paternal_205.1,hg002_chrY_paternal_205.1;transcript_id=HG003_chrY_T0000342;gene_id=HG003_chrY_G0000131;Parent=HG003_chrY_T0000342;transcript_name=hg002_chrY_paternal_205.1;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000342:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9441206	9441364	.	-	.	source_transcript=hg002_chrY_paternal_205.1;source_transcript_name=hg002_chrY_paternal_205.1;source_gene=hg002_chrY_paternal_205;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_205;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_205.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_205.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;alternative_source_transcripts=hg002_chrY_paternal_205.1,hg002_chrY_paternal_205.1;transcript_id=HG003_chrY_T0000342;gene_id=HG003_chrY_G0000131;Parent=HG003_chrY_T0000342;transcript_name=hg002_chrY_paternal_205.1;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000342:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9441365	9442862	.	-	.	source_transcript=hg002_chrY_paternal_205.1;source_transcript_name=hg002_chrY_paternal_205.1;source_gene=hg002_chrY_paternal_205;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_205;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_205.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_205.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;alternative_source_transcripts=hg002_chrY_paternal_205.1,hg002_chrY_paternal_205.1;transcript_id=HG003_chrY_T0000342;gene_id=HG003_chrY_G0000131;Parent=HG003_chrY_T0000342;transcript_name=hg002_chrY_paternal_205.1;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000342:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9442863	9443008	.	-	.	source_transcript=hg002_chrY_paternal_205.1;source_transcript_name=hg002_chrY_paternal_205.1;source_gene=hg002_chrY_paternal_205;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_205;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_205.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_205.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;alternative_source_transcripts=hg002_chrY_paternal_205.1,hg002_chrY_paternal_205.1;transcript_id=HG003_chrY_T0000342;gene_id=HG003_chrY_G0000131;Parent=HG003_chrY_T0000342;transcript_name=hg002_chrY_paternal_205.1;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000342:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9443009	9443094	.	-	.	source_transcript=hg002_chrY_paternal_205.1;source_transcript_name=hg002_chrY_paternal_205.1;source_gene=hg002_chrY_paternal_205;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_205;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_205.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_205.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;alternative_source_transcripts=hg002_chrY_paternal_205.1,hg002_chrY_paternal_205.1;transcript_id=HG003_chrY_T0000342;gene_id=HG003_chrY_G0000131;Parent=HG003_chrY_T0000342;transcript_name=hg002_chrY_paternal_205.1;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000342:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9443095	9443196	.	-	.	source_transcript=hg002_chrY_paternal_205.1;source_transcript_name=hg002_chrY_paternal_205.1;source_gene=hg002_chrY_paternal_205;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_205;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_205.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_205.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;alternative_source_transcripts=hg002_chrY_paternal_205.1,hg002_chrY_paternal_205.1;transcript_id=HG003_chrY_T0000342;gene_id=HG003_chrY_G0000131;Parent=HG003_chrY_T0000342;transcript_name=hg002_chrY_paternal_205.1;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000342:3;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9445809	9448623	.	+	.	source_gene_common_name=TSPY4;source_gene=hg002_chrY_paternal_206;alternative_source_transcripts=hg002_chrY_paternal_206.1,hg002_chrY_paternal_206.1;gene_id=HG003_chrY_G0000132;gene_biotype=protein_coding;gene_name=TSPY4;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000132;Name=TSPY4
HG003_chrY	CAT	transcript	9445809	9448623	100	+	.	source_transcript=hg002_chrY_paternal_206.1;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.1,hg002_chrY_paternal_206.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000343;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_G0000132;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=HG003_chrY_T0000343;Name=TSPY4
HG003_chrY	CAT	exon	9445809	9446358	.	+	.	source_transcript=hg002_chrY_paternal_206.1;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.1,hg002_chrY_paternal_206.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000343;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000343;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000343:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9445855	9446358	.	+	0	source_transcript=hg002_chrY_paternal_206.1;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.1,hg002_chrY_paternal_206.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000343;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000343;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000343:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9445855	9445857	.	+	0	source_transcript=hg002_chrY_paternal_206.1;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.1,hg002_chrY_paternal_206.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000343;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000343;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=start_codon:HG003_chrY_T0000343;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9446359	9446965	.	+	.	source_transcript=hg002_chrY_paternal_206.1;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.1,hg002_chrY_paternal_206.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000343;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000343;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000343:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9446966	9447043	.	+	.	source_transcript=hg002_chrY_paternal_206.1;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.1,hg002_chrY_paternal_206.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000343;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000343;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000343:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9446966	9447043	.	+	0	source_transcript=hg002_chrY_paternal_206.1;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.1,hg002_chrY_paternal_206.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000343;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000343;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000343:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9447044	9447171	.	+	.	source_transcript=hg002_chrY_paternal_206.1;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.1,hg002_chrY_paternal_206.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000343;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000343;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000343:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9447172	9447283	.	+	.	source_transcript=hg002_chrY_paternal_206.1;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.1,hg002_chrY_paternal_206.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000343;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000343;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000343:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9447172	9447283	.	+	0	source_transcript=hg002_chrY_paternal_206.1;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.1,hg002_chrY_paternal_206.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000343;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000343;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000343:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9447284	9447384	.	+	.	source_transcript=hg002_chrY_paternal_206.1;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.1,hg002_chrY_paternal_206.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000343;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000343;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000343:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9447385	9447530	.	+	.	source_transcript=hg002_chrY_paternal_206.1;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.1,hg002_chrY_paternal_206.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000343;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000343;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000343:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9447385	9447530	.	+	2	source_transcript=hg002_chrY_paternal_206.1;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.1,hg002_chrY_paternal_206.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000343;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000343;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000343:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9447531	9447636	.	+	.	source_transcript=hg002_chrY_paternal_206.1;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.1,hg002_chrY_paternal_206.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000343;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000343;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000343:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9447637	9447718	.	+	.	source_transcript=hg002_chrY_paternal_206.1;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.1,hg002_chrY_paternal_206.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000343;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000343;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000343:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9447637	9447718	.	+	0	source_transcript=hg002_chrY_paternal_206.1;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.1,hg002_chrY_paternal_206.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000343;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000343;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000343:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9447719	9448412	.	+	.	source_transcript=hg002_chrY_paternal_206.1;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.1,hg002_chrY_paternal_206.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000343;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000343;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000343:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9448413	9448623	.	+	.	source_transcript=hg002_chrY_paternal_206.1;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.1,hg002_chrY_paternal_206.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000343;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000343;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000343:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9448413	9448435	.	+	2	source_transcript=hg002_chrY_paternal_206.1;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.1,hg002_chrY_paternal_206.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000343;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000343;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000343:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9448433	9448435	.	+	0	source_transcript=hg002_chrY_paternal_206.1;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.1,hg002_chrY_paternal_206.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000343;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000343;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=stop_codon:HG003_chrY_T0000343;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9445809	9448623	100	+	.	source_transcript=hg002_chrY_paternal_206.2;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.2,hg002_chrY_paternal_206.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000344;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_G0000132;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=HG003_chrY_T0000344;Name=TSPY4
HG003_chrY	CAT	exon	9445809	9446358	.	+	.	source_transcript=hg002_chrY_paternal_206.2;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.2,hg002_chrY_paternal_206.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000344;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000344;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000344:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9445855	9446358	.	+	0	source_transcript=hg002_chrY_paternal_206.2;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.2,hg002_chrY_paternal_206.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000344;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000344;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000344:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9445855	9445857	.	+	0	source_transcript=hg002_chrY_paternal_206.2;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.2,hg002_chrY_paternal_206.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000344;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000344;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=start_codon:HG003_chrY_T0000344;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9446359	9446965	.	+	.	source_transcript=hg002_chrY_paternal_206.2;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.2,hg002_chrY_paternal_206.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000344;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000344;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000344:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9446966	9447043	.	+	.	source_transcript=hg002_chrY_paternal_206.2;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.2,hg002_chrY_paternal_206.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000344;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000344;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000344:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9446966	9447043	.	+	0	source_transcript=hg002_chrY_paternal_206.2;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.2,hg002_chrY_paternal_206.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000344;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000344;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000344:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9447044	9447171	.	+	.	source_transcript=hg002_chrY_paternal_206.2;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.2,hg002_chrY_paternal_206.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000344;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000344;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000344:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9447172	9447283	.	+	.	source_transcript=hg002_chrY_paternal_206.2;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.2,hg002_chrY_paternal_206.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000344;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000344;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000344:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9447172	9447283	.	+	0	source_transcript=hg002_chrY_paternal_206.2;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.2,hg002_chrY_paternal_206.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000344;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000344;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000344:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9447284	9447384	.	+	.	source_transcript=hg002_chrY_paternal_206.2;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.2,hg002_chrY_paternal_206.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000344;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000344;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000344:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9447385	9447530	.	+	.	source_transcript=hg002_chrY_paternal_206.2;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.2,hg002_chrY_paternal_206.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000344;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000344;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000344:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9447385	9447530	.	+	2	source_transcript=hg002_chrY_paternal_206.2;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.2,hg002_chrY_paternal_206.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000344;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000344;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000344:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9447531	9447625	.	+	.	source_transcript=hg002_chrY_paternal_206.2;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.2,hg002_chrY_paternal_206.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000344;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000344;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000344:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9447626	9447718	.	+	.	source_transcript=hg002_chrY_paternal_206.2;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.2,hg002_chrY_paternal_206.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000344;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000344;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000344:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9447626	9447688	.	+	0	source_transcript=hg002_chrY_paternal_206.2;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.2,hg002_chrY_paternal_206.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000344;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000344;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000344:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9447686	9447688	.	+	0	source_transcript=hg002_chrY_paternal_206.2;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.2,hg002_chrY_paternal_206.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000344;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000344;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=stop_codon:HG003_chrY_T0000344;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9447719	9448412	.	+	.	source_transcript=hg002_chrY_paternal_206.2;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.2,hg002_chrY_paternal_206.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000344;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000344;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000344:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9448413	9448623	.	+	.	source_transcript=hg002_chrY_paternal_206.2;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.2,hg002_chrY_paternal_206.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000344;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000344;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000344:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9445809	9448623	100	+	.	source_transcript=hg002_chrY_paternal_206.3;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.3,hg002_chrY_paternal_206.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000345;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_G0000132;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=HG003_chrY_T0000345;Name=TSPY4
HG003_chrY	CAT	exon	9445809	9446358	.	+	.	source_transcript=hg002_chrY_paternal_206.3;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.3,hg002_chrY_paternal_206.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000345;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000345;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000345:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9445855	9446358	.	+	0	source_transcript=hg002_chrY_paternal_206.3;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.3,hg002_chrY_paternal_206.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000345;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000345;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000345:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9445855	9445857	.	+	0	source_transcript=hg002_chrY_paternal_206.3;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.3,hg002_chrY_paternal_206.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000345;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000345;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=start_codon:HG003_chrY_T0000345;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9446359	9446965	.	+	.	source_transcript=hg002_chrY_paternal_206.3;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.3,hg002_chrY_paternal_206.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000345;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000345;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000345:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9446966	9447043	.	+	.	source_transcript=hg002_chrY_paternal_206.3;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.3,hg002_chrY_paternal_206.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000345;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000345;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000345:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9446966	9447043	.	+	0	source_transcript=hg002_chrY_paternal_206.3;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.3,hg002_chrY_paternal_206.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000345;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000345;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000345:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9447044	9447171	.	+	.	source_transcript=hg002_chrY_paternal_206.3;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.3,hg002_chrY_paternal_206.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000345;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000345;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000345:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9447172	9447283	.	+	.	source_transcript=hg002_chrY_paternal_206.3;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.3,hg002_chrY_paternal_206.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000345;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000345;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000345:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9447172	9447283	.	+	0	source_transcript=hg002_chrY_paternal_206.3;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.3,hg002_chrY_paternal_206.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000345;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000345;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000345:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9447284	9447391	.	+	.	source_transcript=hg002_chrY_paternal_206.3;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.3,hg002_chrY_paternal_206.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000345;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000345;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000345:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9447392	9447530	.	+	.	source_transcript=hg002_chrY_paternal_206.3;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.3,hg002_chrY_paternal_206.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000345;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000345;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000345:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9447392	9447530	.	+	2	source_transcript=hg002_chrY_paternal_206.3;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.3,hg002_chrY_paternal_206.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000345;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000345;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000345:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9447531	9447636	.	+	.	source_transcript=hg002_chrY_paternal_206.3;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.3,hg002_chrY_paternal_206.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000345;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000345;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000345:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9447637	9447718	.	+	.	source_transcript=hg002_chrY_paternal_206.3;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.3,hg002_chrY_paternal_206.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000345;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000345;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000345:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9447637	9447688	.	+	1	source_transcript=hg002_chrY_paternal_206.3;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.3,hg002_chrY_paternal_206.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000345;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000345;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000345:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9447686	9447688	.	+	0	source_transcript=hg002_chrY_paternal_206.3;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.3,hg002_chrY_paternal_206.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000345;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000345;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=stop_codon:HG003_chrY_T0000345;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9447719	9448412	.	+	.	source_transcript=hg002_chrY_paternal_206.3;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.3,hg002_chrY_paternal_206.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000345;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000345;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000345:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9448413	9448623	.	+	.	source_transcript=hg002_chrY_paternal_206.3;source_transcript_name=hg002_chrY_paternal_206.4;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_206.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.3,hg002_chrY_paternal_206.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000345;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000345;transcript_name=hg002_chrY_paternal_206.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000345:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9445809	9448623	1000	+	.	source_transcript=hg002_chrY_paternal_206.4;source_transcript_name=hg002_chrY_paternal_206.1;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_206.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.4,hg002_chrY_paternal_206.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000346;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_G0000132;transcript_name=hg002_chrY_paternal_206.1;gene_name=TSPY4;ID=HG003_chrY_T0000346;Name=TSPY4
HG003_chrY	CAT	exon	9445809	9446358	.	+	.	source_transcript=hg002_chrY_paternal_206.4;source_transcript_name=hg002_chrY_paternal_206.1;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_206.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.4,hg002_chrY_paternal_206.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000346;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000346;transcript_name=hg002_chrY_paternal_206.1;gene_name=TSPY4;ID=exon:HG003_chrY_T0000346:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9446359	9446965	.	+	.	source_transcript=hg002_chrY_paternal_206.4;source_transcript_name=hg002_chrY_paternal_206.1;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_206.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.4,hg002_chrY_paternal_206.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000346;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000346;transcript_name=hg002_chrY_paternal_206.1;gene_name=TSPY4;ID=intron:HG003_chrY_T0000346:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9446966	9447043	.	+	.	source_transcript=hg002_chrY_paternal_206.4;source_transcript_name=hg002_chrY_paternal_206.1;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_206.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.4,hg002_chrY_paternal_206.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000346;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000346;transcript_name=hg002_chrY_paternal_206.1;gene_name=TSPY4;ID=exon:HG003_chrY_T0000346:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9447044	9447171	.	+	.	source_transcript=hg002_chrY_paternal_206.4;source_transcript_name=hg002_chrY_paternal_206.1;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_206.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.4,hg002_chrY_paternal_206.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000346;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000346;transcript_name=hg002_chrY_paternal_206.1;gene_name=TSPY4;ID=intron:HG003_chrY_T0000346:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9447172	9447283	.	+	.	source_transcript=hg002_chrY_paternal_206.4;source_transcript_name=hg002_chrY_paternal_206.1;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_206.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.4,hg002_chrY_paternal_206.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000346;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000346;transcript_name=hg002_chrY_paternal_206.1;gene_name=TSPY4;ID=exon:HG003_chrY_T0000346:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9447284	9447391	.	+	.	source_transcript=hg002_chrY_paternal_206.4;source_transcript_name=hg002_chrY_paternal_206.1;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_206.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.4,hg002_chrY_paternal_206.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000346;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000346;transcript_name=hg002_chrY_paternal_206.1;gene_name=TSPY4;ID=intron:HG003_chrY_T0000346:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9447392	9447530	.	+	.	source_transcript=hg002_chrY_paternal_206.4;source_transcript_name=hg002_chrY_paternal_206.1;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_206.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.4,hg002_chrY_paternal_206.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000346;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000346;transcript_name=hg002_chrY_paternal_206.1;gene_name=TSPY4;ID=exon:HG003_chrY_T0000346:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9447531	9447625	.	+	.	source_transcript=hg002_chrY_paternal_206.4;source_transcript_name=hg002_chrY_paternal_206.1;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_206.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.4,hg002_chrY_paternal_206.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000346;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000346;transcript_name=hg002_chrY_paternal_206.1;gene_name=TSPY4;ID=intron:HG003_chrY_T0000346:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9447626	9447718	.	+	.	source_transcript=hg002_chrY_paternal_206.4;source_transcript_name=hg002_chrY_paternal_206.1;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_206.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.4,hg002_chrY_paternal_206.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000346;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000346;transcript_name=hg002_chrY_paternal_206.1;gene_name=TSPY4;ID=exon:HG003_chrY_T0000346:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9447719	9448412	.	+	.	source_transcript=hg002_chrY_paternal_206.4;source_transcript_name=hg002_chrY_paternal_206.1;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_206.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.4,hg002_chrY_paternal_206.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000346;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000346;transcript_name=hg002_chrY_paternal_206.1;gene_name=TSPY4;ID=intron:HG003_chrY_T0000346:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9448413	9448623	.	+	.	source_transcript=hg002_chrY_paternal_206.4;source_transcript_name=hg002_chrY_paternal_206.1;source_gene=hg002_chrY_paternal_206;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_206;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_206.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_206.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.4,hg002_chrY_paternal_206.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000346;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000346;transcript_name=hg002_chrY_paternal_206.1;gene_name=TSPY4;ID=exon:HG003_chrY_T0000346:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9457881	9463567	.	-	.	source_gene_common_name=FAM197Y2;source_gene=hg002_chrY_paternal_207;alternative_source_transcripts=hg002_chrY_paternal_207.1,hg002_chrY_paternal_207.1;gene_id=HG003_chrY_G0000133;gene_biotype=lncRNA;gene_name=FAM197Y2;gene_sources=liftoff;ID=HG003_chrY_G0000133;Name=FAM197Y2
HG003_chrY	CAT	transcript	9457881	9463567	1000	-	.	source_transcript=hg002_chrY_paternal_207.1;source_transcript_name=hg002_chrY_paternal_207.1;source_gene=hg002_chrY_paternal_207;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_207;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_207.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_207.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_207.1,hg002_chrY_paternal_207.1;transcript_id=HG003_chrY_T0000347;gene_id=HG003_chrY_G0000133;Parent=HG003_chrY_G0000133;transcript_name=hg002_chrY_paternal_207.1;gene_name=FAM197Y2;ID=HG003_chrY_T0000347;Name=FAM197Y2
HG003_chrY	CAT	exon	9457881	9457940	.	-	.	source_transcript=hg002_chrY_paternal_207.1;source_transcript_name=hg002_chrY_paternal_207.1;source_gene=hg002_chrY_paternal_207;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_207;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_207.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_207.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_207.1,hg002_chrY_paternal_207.1;transcript_id=HG003_chrY_T0000347;gene_id=HG003_chrY_G0000133;Parent=HG003_chrY_T0000347;transcript_name=hg002_chrY_paternal_207.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000347:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9457941	9461489	.	-	.	source_transcript=hg002_chrY_paternal_207.1;source_transcript_name=hg002_chrY_paternal_207.1;source_gene=hg002_chrY_paternal_207;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_207;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_207.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_207.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_207.1,hg002_chrY_paternal_207.1;transcript_id=HG003_chrY_T0000347;gene_id=HG003_chrY_G0000133;Parent=HG003_chrY_T0000347;transcript_name=hg002_chrY_paternal_207.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000347:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9461490	9461648	.	-	.	source_transcript=hg002_chrY_paternal_207.1;source_transcript_name=hg002_chrY_paternal_207.1;source_gene=hg002_chrY_paternal_207;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_207;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_207.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_207.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_207.1,hg002_chrY_paternal_207.1;transcript_id=HG003_chrY_T0000347;gene_id=HG003_chrY_G0000133;Parent=HG003_chrY_T0000347;transcript_name=hg002_chrY_paternal_207.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000347:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9461649	9463144	.	-	.	source_transcript=hg002_chrY_paternal_207.1;source_transcript_name=hg002_chrY_paternal_207.1;source_gene=hg002_chrY_paternal_207;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_207;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_207.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_207.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_207.1,hg002_chrY_paternal_207.1;transcript_id=HG003_chrY_T0000347;gene_id=HG003_chrY_G0000133;Parent=HG003_chrY_T0000347;transcript_name=hg002_chrY_paternal_207.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000347:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9463145	9463290	.	-	.	source_transcript=hg002_chrY_paternal_207.1;source_transcript_name=hg002_chrY_paternal_207.1;source_gene=hg002_chrY_paternal_207;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_207;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_207.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_207.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_207.1,hg002_chrY_paternal_207.1;transcript_id=HG003_chrY_T0000347;gene_id=HG003_chrY_G0000133;Parent=HG003_chrY_T0000347;transcript_name=hg002_chrY_paternal_207.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000347:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9463291	9463376	.	-	.	source_transcript=hg002_chrY_paternal_207.1;source_transcript_name=hg002_chrY_paternal_207.1;source_gene=hg002_chrY_paternal_207;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_207;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_207.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_207.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_207.1,hg002_chrY_paternal_207.1;transcript_id=HG003_chrY_T0000347;gene_id=HG003_chrY_G0000133;Parent=HG003_chrY_T0000347;transcript_name=hg002_chrY_paternal_207.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000347:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9463377	9463567	.	-	.	source_transcript=hg002_chrY_paternal_207.1;source_transcript_name=hg002_chrY_paternal_207.1;source_gene=hg002_chrY_paternal_207;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_207;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_207.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_207.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_207.1,hg002_chrY_paternal_207.1;transcript_id=HG003_chrY_T0000347;gene_id=HG003_chrY_G0000133;Parent=HG003_chrY_T0000347;transcript_name=hg002_chrY_paternal_207.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000347:3;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9466091	9468887	.	+	.	source_gene_common_name=TSPY3;source_gene=hg002_chrY_paternal_208;alternative_source_transcripts=hg002_chrY_paternal_208.1,hg002_chrY_paternal_208.1;gene_id=HG003_chrY_G0000134;gene_biotype=protein_coding;gene_name=TSPY3;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000134;Name=TSPY3
HG003_chrY	CAT	transcript	9466091	9468887	100	+	.	source_transcript=hg002_chrY_paternal_208.1;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.1,hg002_chrY_paternal_208.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000348;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_G0000134;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=HG003_chrY_T0000348;Name=TSPY3
HG003_chrY	CAT	exon	9466091	9466622	.	+	.	source_transcript=hg002_chrY_paternal_208.1;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.1,hg002_chrY_paternal_208.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000348;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000348;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000348:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9466137	9466622	.	+	0	source_transcript=hg002_chrY_paternal_208.1;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.1,hg002_chrY_paternal_208.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000348;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000348;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000348:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9466137	9466139	.	+	0	source_transcript=hg002_chrY_paternal_208.1;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.1,hg002_chrY_paternal_208.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000348;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000348;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000348;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9466623	9467229	.	+	.	source_transcript=hg002_chrY_paternal_208.1;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.1,hg002_chrY_paternal_208.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000348;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000348;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000348:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9467230	9467307	.	+	.	source_transcript=hg002_chrY_paternal_208.1;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.1,hg002_chrY_paternal_208.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000348;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000348;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000348:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9467230	9467307	.	+	0	source_transcript=hg002_chrY_paternal_208.1;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.1,hg002_chrY_paternal_208.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000348;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000348;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000348:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9467308	9467435	.	+	.	source_transcript=hg002_chrY_paternal_208.1;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.1,hg002_chrY_paternal_208.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000348;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000348;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000348:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9467436	9467547	.	+	.	source_transcript=hg002_chrY_paternal_208.1;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.1,hg002_chrY_paternal_208.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000348;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000348;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000348:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9467436	9467547	.	+	0	source_transcript=hg002_chrY_paternal_208.1;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.1,hg002_chrY_paternal_208.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000348;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000348;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000348:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9467548	9467648	.	+	.	source_transcript=hg002_chrY_paternal_208.1;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.1,hg002_chrY_paternal_208.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000348;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000348;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000348:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9467649	9467794	.	+	.	source_transcript=hg002_chrY_paternal_208.1;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.1,hg002_chrY_paternal_208.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000348;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000348;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000348:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9467649	9467794	.	+	2	source_transcript=hg002_chrY_paternal_208.1;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.1,hg002_chrY_paternal_208.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000348;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000348;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000348:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9467795	9467900	.	+	.	source_transcript=hg002_chrY_paternal_208.1;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.1,hg002_chrY_paternal_208.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000348;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000348;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000348:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9467901	9467982	.	+	.	source_transcript=hg002_chrY_paternal_208.1;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.1,hg002_chrY_paternal_208.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000348;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000348;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000348:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9467901	9467982	.	+	0	source_transcript=hg002_chrY_paternal_208.1;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.1,hg002_chrY_paternal_208.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000348;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000348;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000348:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9467983	9468676	.	+	.	source_transcript=hg002_chrY_paternal_208.1;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.1,hg002_chrY_paternal_208.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000348;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000348;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000348:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9468677	9468887	.	+	.	source_transcript=hg002_chrY_paternal_208.1;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.1,hg002_chrY_paternal_208.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000348;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000348;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000348:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9468677	9468699	.	+	2	source_transcript=hg002_chrY_paternal_208.1;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.1,hg002_chrY_paternal_208.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000348;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000348;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000348:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9468697	9468699	.	+	0	source_transcript=hg002_chrY_paternal_208.1;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.1,hg002_chrY_paternal_208.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000348;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000348;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000348;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9466091	9468887	100	+	.	source_transcript=hg002_chrY_paternal_208.2;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.2,hg002_chrY_paternal_208.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000349;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_G0000134;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=HG003_chrY_T0000349;Name=TSPY3
HG003_chrY	CAT	exon	9466091	9466622	.	+	.	source_transcript=hg002_chrY_paternal_208.2;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.2,hg002_chrY_paternal_208.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000349;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000349;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000349:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9466137	9466622	.	+	0	source_transcript=hg002_chrY_paternal_208.2;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.2,hg002_chrY_paternal_208.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000349;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000349;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000349:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9466137	9466139	.	+	0	source_transcript=hg002_chrY_paternal_208.2;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.2,hg002_chrY_paternal_208.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000349;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000349;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000349;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9466623	9467229	.	+	.	source_transcript=hg002_chrY_paternal_208.2;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.2,hg002_chrY_paternal_208.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000349;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000349;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000349:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9467230	9467307	.	+	.	source_transcript=hg002_chrY_paternal_208.2;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.2,hg002_chrY_paternal_208.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000349;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000349;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000349:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9467230	9467307	.	+	0	source_transcript=hg002_chrY_paternal_208.2;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.2,hg002_chrY_paternal_208.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000349;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000349;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000349:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9467308	9467435	.	+	.	source_transcript=hg002_chrY_paternal_208.2;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.2,hg002_chrY_paternal_208.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000349;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000349;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000349:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9467436	9467547	.	+	.	source_transcript=hg002_chrY_paternal_208.2;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.2,hg002_chrY_paternal_208.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000349;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000349;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000349:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9467436	9467547	.	+	0	source_transcript=hg002_chrY_paternal_208.2;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.2,hg002_chrY_paternal_208.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000349;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000349;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000349:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9467548	9467648	.	+	.	source_transcript=hg002_chrY_paternal_208.2;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.2,hg002_chrY_paternal_208.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000349;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000349;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000349:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9467649	9467794	.	+	.	source_transcript=hg002_chrY_paternal_208.2;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.2,hg002_chrY_paternal_208.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000349;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000349;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000349:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9467649	9467794	.	+	2	source_transcript=hg002_chrY_paternal_208.2;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.2,hg002_chrY_paternal_208.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000349;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000349;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000349:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9467795	9467889	.	+	.	source_transcript=hg002_chrY_paternal_208.2;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.2,hg002_chrY_paternal_208.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000349;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000349;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000349:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9467890	9467982	.	+	.	source_transcript=hg002_chrY_paternal_208.2;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.2,hg002_chrY_paternal_208.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000349;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000349;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000349:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9467890	9467952	.	+	0	source_transcript=hg002_chrY_paternal_208.2;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.2,hg002_chrY_paternal_208.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000349;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000349;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000349:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9467950	9467952	.	+	0	source_transcript=hg002_chrY_paternal_208.2;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.2,hg002_chrY_paternal_208.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000349;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000349;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000349;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9467983	9468676	.	+	.	source_transcript=hg002_chrY_paternal_208.2;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.2,hg002_chrY_paternal_208.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000349;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000349;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000349:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9468677	9468887	.	+	.	source_transcript=hg002_chrY_paternal_208.2;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.2,hg002_chrY_paternal_208.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000349;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000349;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000349:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9466091	9468887	100	+	.	source_transcript=hg002_chrY_paternal_208.3;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.3,hg002_chrY_paternal_208.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000350;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_G0000134;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=HG003_chrY_T0000350;Name=TSPY3
HG003_chrY	CAT	exon	9466091	9466622	.	+	.	source_transcript=hg002_chrY_paternal_208.3;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.3,hg002_chrY_paternal_208.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000350;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000350;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000350:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9466137	9466622	.	+	0	source_transcript=hg002_chrY_paternal_208.3;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.3,hg002_chrY_paternal_208.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000350;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000350;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000350:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9466137	9466139	.	+	0	source_transcript=hg002_chrY_paternal_208.3;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.3,hg002_chrY_paternal_208.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000350;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000350;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000350;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9466623	9467229	.	+	.	source_transcript=hg002_chrY_paternal_208.3;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.3,hg002_chrY_paternal_208.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000350;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000350;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000350:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9467230	9467307	.	+	.	source_transcript=hg002_chrY_paternal_208.3;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.3,hg002_chrY_paternal_208.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000350;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000350;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000350:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9467230	9467307	.	+	0	source_transcript=hg002_chrY_paternal_208.3;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.3,hg002_chrY_paternal_208.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000350;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000350;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000350:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9467308	9467435	.	+	.	source_transcript=hg002_chrY_paternal_208.3;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.3,hg002_chrY_paternal_208.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000350;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000350;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000350:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9467436	9467547	.	+	.	source_transcript=hg002_chrY_paternal_208.3;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.3,hg002_chrY_paternal_208.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000350;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000350;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000350:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9467436	9467547	.	+	0	source_transcript=hg002_chrY_paternal_208.3;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.3,hg002_chrY_paternal_208.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000350;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000350;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000350:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9467548	9467655	.	+	.	source_transcript=hg002_chrY_paternal_208.3;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.3,hg002_chrY_paternal_208.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000350;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000350;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000350:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9467656	9467794	.	+	.	source_transcript=hg002_chrY_paternal_208.3;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.3,hg002_chrY_paternal_208.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000350;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000350;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000350:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9467656	9467794	.	+	2	source_transcript=hg002_chrY_paternal_208.3;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.3,hg002_chrY_paternal_208.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000350;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000350;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000350:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9467795	9467900	.	+	.	source_transcript=hg002_chrY_paternal_208.3;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.3,hg002_chrY_paternal_208.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000350;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000350;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000350:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9467901	9467982	.	+	.	source_transcript=hg002_chrY_paternal_208.3;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.3,hg002_chrY_paternal_208.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000350;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000350;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000350:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9467901	9467952	.	+	1	source_transcript=hg002_chrY_paternal_208.3;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.3,hg002_chrY_paternal_208.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000350;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000350;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000350:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9467950	9467952	.	+	0	source_transcript=hg002_chrY_paternal_208.3;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.3,hg002_chrY_paternal_208.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000350;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000350;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000350;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9467983	9468676	.	+	.	source_transcript=hg002_chrY_paternal_208.3;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.3,hg002_chrY_paternal_208.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000350;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000350;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=intron:HG003_chrY_T0000350:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9468677	9468887	.	+	.	source_transcript=hg002_chrY_paternal_208.3;source_transcript_name=hg002_chrY_paternal_208.4;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_208.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.3,hg002_chrY_paternal_208.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000350;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000350;transcript_name=hg002_chrY_paternal_208.4;gene_name=TSPY3;ID=exon:HG003_chrY_T0000350:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9466091	9468887	1000	+	.	source_transcript=hg002_chrY_paternal_208.4;source_transcript_name=hg002_chrY_paternal_208.1;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_208.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.4,hg002_chrY_paternal_208.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000351;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_G0000134;transcript_name=hg002_chrY_paternal_208.1;gene_name=TSPY3;ID=HG003_chrY_T0000351;Name=TSPY3
HG003_chrY	CAT	exon	9466091	9466622	.	+	.	source_transcript=hg002_chrY_paternal_208.4;source_transcript_name=hg002_chrY_paternal_208.1;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_208.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.4,hg002_chrY_paternal_208.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000351;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000351;transcript_name=hg002_chrY_paternal_208.1;gene_name=TSPY3;ID=exon:HG003_chrY_T0000351:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9466623	9467229	.	+	.	source_transcript=hg002_chrY_paternal_208.4;source_transcript_name=hg002_chrY_paternal_208.1;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_208.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.4,hg002_chrY_paternal_208.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000351;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000351;transcript_name=hg002_chrY_paternal_208.1;gene_name=TSPY3;ID=intron:HG003_chrY_T0000351:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9467230	9467307	.	+	.	source_transcript=hg002_chrY_paternal_208.4;source_transcript_name=hg002_chrY_paternal_208.1;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_208.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.4,hg002_chrY_paternal_208.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000351;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000351;transcript_name=hg002_chrY_paternal_208.1;gene_name=TSPY3;ID=exon:HG003_chrY_T0000351:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9467308	9467435	.	+	.	source_transcript=hg002_chrY_paternal_208.4;source_transcript_name=hg002_chrY_paternal_208.1;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_208.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.4,hg002_chrY_paternal_208.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000351;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000351;transcript_name=hg002_chrY_paternal_208.1;gene_name=TSPY3;ID=intron:HG003_chrY_T0000351:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9467436	9467547	.	+	.	source_transcript=hg002_chrY_paternal_208.4;source_transcript_name=hg002_chrY_paternal_208.1;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_208.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.4,hg002_chrY_paternal_208.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000351;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000351;transcript_name=hg002_chrY_paternal_208.1;gene_name=TSPY3;ID=exon:HG003_chrY_T0000351:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9467548	9467655	.	+	.	source_transcript=hg002_chrY_paternal_208.4;source_transcript_name=hg002_chrY_paternal_208.1;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_208.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.4,hg002_chrY_paternal_208.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000351;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000351;transcript_name=hg002_chrY_paternal_208.1;gene_name=TSPY3;ID=intron:HG003_chrY_T0000351:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9467656	9467794	.	+	.	source_transcript=hg002_chrY_paternal_208.4;source_transcript_name=hg002_chrY_paternal_208.1;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_208.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.4,hg002_chrY_paternal_208.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000351;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000351;transcript_name=hg002_chrY_paternal_208.1;gene_name=TSPY3;ID=exon:HG003_chrY_T0000351:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9467795	9467889	.	+	.	source_transcript=hg002_chrY_paternal_208.4;source_transcript_name=hg002_chrY_paternal_208.1;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_208.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.4,hg002_chrY_paternal_208.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000351;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000351;transcript_name=hg002_chrY_paternal_208.1;gene_name=TSPY3;ID=intron:HG003_chrY_T0000351:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9467890	9467982	.	+	.	source_transcript=hg002_chrY_paternal_208.4;source_transcript_name=hg002_chrY_paternal_208.1;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_208.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.4,hg002_chrY_paternal_208.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000351;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000351;transcript_name=hg002_chrY_paternal_208.1;gene_name=TSPY3;ID=exon:HG003_chrY_T0000351:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9467983	9468676	.	+	.	source_transcript=hg002_chrY_paternal_208.4;source_transcript_name=hg002_chrY_paternal_208.1;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_208.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.4,hg002_chrY_paternal_208.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000351;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000351;transcript_name=hg002_chrY_paternal_208.1;gene_name=TSPY3;ID=intron:HG003_chrY_T0000351:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9468677	9468887	.	+	.	source_transcript=hg002_chrY_paternal_208.4;source_transcript_name=hg002_chrY_paternal_208.1;source_gene=hg002_chrY_paternal_208;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_208;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_208.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_208.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_208.4,hg002_chrY_paternal_208.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000351;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000351;transcript_name=hg002_chrY_paternal_208.1;gene_name=TSPY3;ID=exon:HG003_chrY_T0000351:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9478143	9483832	.	-	.	source_gene_common_name=FAM197Y2;source_gene=hg002_chrY_paternal_209;alternative_source_transcripts=hg002_chrY_paternal_209.1,hg002_chrY_paternal_209.1;gene_id=HG003_chrY_G0000135;gene_biotype=lncRNA;gene_name=FAM197Y2;gene_sources=liftoff;ID=HG003_chrY_G0000135;Name=FAM197Y2
HG003_chrY	CAT	transcript	9478143	9483832	1000	-	.	source_transcript=hg002_chrY_paternal_209.1;source_transcript_name=hg002_chrY_paternal_209.1;source_gene=hg002_chrY_paternal_209;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_209;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_209.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_209.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_209.1,hg002_chrY_paternal_209.1;transcript_id=HG003_chrY_T0000352;gene_id=HG003_chrY_G0000135;Parent=HG003_chrY_G0000135;transcript_name=hg002_chrY_paternal_209.1;gene_name=FAM197Y2;ID=HG003_chrY_T0000352;Name=FAM197Y2
HG003_chrY	CAT	exon	9478143	9478202	.	-	.	source_transcript=hg002_chrY_paternal_209.1;source_transcript_name=hg002_chrY_paternal_209.1;source_gene=hg002_chrY_paternal_209;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_209;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_209.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_209.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_209.1,hg002_chrY_paternal_209.1;transcript_id=HG003_chrY_T0000352;gene_id=HG003_chrY_G0000135;Parent=HG003_chrY_T0000352;transcript_name=hg002_chrY_paternal_209.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000352:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9478203	9481756	.	-	.	source_transcript=hg002_chrY_paternal_209.1;source_transcript_name=hg002_chrY_paternal_209.1;source_gene=hg002_chrY_paternal_209;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_209;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_209.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_209.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_209.1,hg002_chrY_paternal_209.1;transcript_id=HG003_chrY_T0000352;gene_id=HG003_chrY_G0000135;Parent=HG003_chrY_T0000352;transcript_name=hg002_chrY_paternal_209.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000352:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9481757	9481915	.	-	.	source_transcript=hg002_chrY_paternal_209.1;source_transcript_name=hg002_chrY_paternal_209.1;source_gene=hg002_chrY_paternal_209;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_209;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_209.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_209.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_209.1,hg002_chrY_paternal_209.1;transcript_id=HG003_chrY_T0000352;gene_id=HG003_chrY_G0000135;Parent=HG003_chrY_T0000352;transcript_name=hg002_chrY_paternal_209.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000352:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9481916	9483409	.	-	.	source_transcript=hg002_chrY_paternal_209.1;source_transcript_name=hg002_chrY_paternal_209.1;source_gene=hg002_chrY_paternal_209;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_209;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_209.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_209.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_209.1,hg002_chrY_paternal_209.1;transcript_id=HG003_chrY_T0000352;gene_id=HG003_chrY_G0000135;Parent=HG003_chrY_T0000352;transcript_name=hg002_chrY_paternal_209.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000352:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9483410	9483555	.	-	.	source_transcript=hg002_chrY_paternal_209.1;source_transcript_name=hg002_chrY_paternal_209.1;source_gene=hg002_chrY_paternal_209;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_209;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_209.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_209.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_209.1,hg002_chrY_paternal_209.1;transcript_id=HG003_chrY_T0000352;gene_id=HG003_chrY_G0000135;Parent=HG003_chrY_T0000352;transcript_name=hg002_chrY_paternal_209.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000352:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9483556	9483641	.	-	.	source_transcript=hg002_chrY_paternal_209.1;source_transcript_name=hg002_chrY_paternal_209.1;source_gene=hg002_chrY_paternal_209;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_209;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_209.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_209.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_209.1,hg002_chrY_paternal_209.1;transcript_id=HG003_chrY_T0000352;gene_id=HG003_chrY_G0000135;Parent=HG003_chrY_T0000352;transcript_name=hg002_chrY_paternal_209.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000352:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9483642	9483832	.	-	.	source_transcript=hg002_chrY_paternal_209.1;source_transcript_name=hg002_chrY_paternal_209.1;source_gene=hg002_chrY_paternal_209;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_209;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_209.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_209.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_209.1,hg002_chrY_paternal_209.1;transcript_id=HG003_chrY_T0000352;gene_id=HG003_chrY_G0000135;Parent=HG003_chrY_T0000352;transcript_name=hg002_chrY_paternal_209.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000352:3;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9486356	9489170	.	+	.	source_gene_common_name=TSPY9;source_gene=hg002_chrY_paternal_210;alternative_source_transcripts=hg002_chrY_paternal_210.1,hg002_chrY_paternal_210.1;gene_id=HG003_chrY_G0000136;gene_biotype=protein_coding;gene_name=TSPY9;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000136;Name=TSPY9
HG003_chrY	CAT	transcript	9486356	9489170	100	+	.	source_transcript=hg002_chrY_paternal_210.1;source_transcript_name=hg002_chrY_paternal_210.2;source_gene=hg002_chrY_paternal_210;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_210;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_210.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_210.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_210.1,hg002_chrY_paternal_210.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000353;gene_id=HG003_chrY_G0000136;Parent=HG003_chrY_G0000136;transcript_name=hg002_chrY_paternal_210.2;gene_name=TSPY9;ID=HG003_chrY_T0000353;Name=TSPY9
HG003_chrY	CAT	exon	9486356	9486905	.	+	.	source_transcript=hg002_chrY_paternal_210.1;source_transcript_name=hg002_chrY_paternal_210.2;source_gene=hg002_chrY_paternal_210;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_210;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_210.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_210.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_210.1,hg002_chrY_paternal_210.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000353;gene_id=HG003_chrY_G0000136;Parent=HG003_chrY_T0000353;transcript_name=hg002_chrY_paternal_210.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000353:0;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9486402	9486905	.	+	0	source_transcript=hg002_chrY_paternal_210.1;source_transcript_name=hg002_chrY_paternal_210.2;source_gene=hg002_chrY_paternal_210;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_210;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_210.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_210.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_210.1,hg002_chrY_paternal_210.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000353;gene_id=HG003_chrY_G0000136;Parent=HG003_chrY_T0000353;transcript_name=hg002_chrY_paternal_210.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000353:0;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9486402	9486404	.	+	0	source_transcript=hg002_chrY_paternal_210.1;source_transcript_name=hg002_chrY_paternal_210.2;source_gene=hg002_chrY_paternal_210;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_210;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_210.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_210.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_210.1,hg002_chrY_paternal_210.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000353;gene_id=HG003_chrY_G0000136;Parent=HG003_chrY_T0000353;transcript_name=hg002_chrY_paternal_210.2;gene_name=TSPY9;ID=start_codon:HG003_chrY_T0000353;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9486906	9487512	.	+	.	source_transcript=hg002_chrY_paternal_210.1;source_transcript_name=hg002_chrY_paternal_210.2;source_gene=hg002_chrY_paternal_210;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_210;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_210.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_210.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_210.1,hg002_chrY_paternal_210.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000353;gene_id=HG003_chrY_G0000136;Parent=HG003_chrY_T0000353;transcript_name=hg002_chrY_paternal_210.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000353:0;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9487513	9487590	.	+	.	source_transcript=hg002_chrY_paternal_210.1;source_transcript_name=hg002_chrY_paternal_210.2;source_gene=hg002_chrY_paternal_210;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_210;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_210.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_210.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_210.1,hg002_chrY_paternal_210.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000353;gene_id=HG003_chrY_G0000136;Parent=HG003_chrY_T0000353;transcript_name=hg002_chrY_paternal_210.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000353:1;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9487513	9487590	.	+	0	source_transcript=hg002_chrY_paternal_210.1;source_transcript_name=hg002_chrY_paternal_210.2;source_gene=hg002_chrY_paternal_210;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_210;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_210.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_210.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_210.1,hg002_chrY_paternal_210.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000353;gene_id=HG003_chrY_G0000136;Parent=HG003_chrY_T0000353;transcript_name=hg002_chrY_paternal_210.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000353:1;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9487591	9487718	.	+	.	source_transcript=hg002_chrY_paternal_210.1;source_transcript_name=hg002_chrY_paternal_210.2;source_gene=hg002_chrY_paternal_210;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_210;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_210.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_210.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_210.1,hg002_chrY_paternal_210.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000353;gene_id=HG003_chrY_G0000136;Parent=HG003_chrY_T0000353;transcript_name=hg002_chrY_paternal_210.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000353:1;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9487719	9487830	.	+	.	source_transcript=hg002_chrY_paternal_210.1;source_transcript_name=hg002_chrY_paternal_210.2;source_gene=hg002_chrY_paternal_210;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_210;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_210.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_210.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_210.1,hg002_chrY_paternal_210.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000353;gene_id=HG003_chrY_G0000136;Parent=HG003_chrY_T0000353;transcript_name=hg002_chrY_paternal_210.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000353:2;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9487719	9487830	.	+	0	source_transcript=hg002_chrY_paternal_210.1;source_transcript_name=hg002_chrY_paternal_210.2;source_gene=hg002_chrY_paternal_210;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_210;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_210.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_210.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_210.1,hg002_chrY_paternal_210.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000353;gene_id=HG003_chrY_G0000136;Parent=HG003_chrY_T0000353;transcript_name=hg002_chrY_paternal_210.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000353:2;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9487831	9487931	.	+	.	source_transcript=hg002_chrY_paternal_210.1;source_transcript_name=hg002_chrY_paternal_210.2;source_gene=hg002_chrY_paternal_210;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_210;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_210.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_210.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_210.1,hg002_chrY_paternal_210.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000353;gene_id=HG003_chrY_G0000136;Parent=HG003_chrY_T0000353;transcript_name=hg002_chrY_paternal_210.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000353:2;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9487932	9488077	.	+	.	source_transcript=hg002_chrY_paternal_210.1;source_transcript_name=hg002_chrY_paternal_210.2;source_gene=hg002_chrY_paternal_210;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_210;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_210.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_210.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_210.1,hg002_chrY_paternal_210.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000353;gene_id=HG003_chrY_G0000136;Parent=HG003_chrY_T0000353;transcript_name=hg002_chrY_paternal_210.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000353:3;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9487932	9488077	.	+	2	source_transcript=hg002_chrY_paternal_210.1;source_transcript_name=hg002_chrY_paternal_210.2;source_gene=hg002_chrY_paternal_210;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_210;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_210.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_210.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_210.1,hg002_chrY_paternal_210.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000353;gene_id=HG003_chrY_G0000136;Parent=HG003_chrY_T0000353;transcript_name=hg002_chrY_paternal_210.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000353:3;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9488078	9488183	.	+	.	source_transcript=hg002_chrY_paternal_210.1;source_transcript_name=hg002_chrY_paternal_210.2;source_gene=hg002_chrY_paternal_210;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_210;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_210.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_210.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_210.1,hg002_chrY_paternal_210.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000353;gene_id=HG003_chrY_G0000136;Parent=HG003_chrY_T0000353;transcript_name=hg002_chrY_paternal_210.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000353:3;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9488184	9488265	.	+	.	source_transcript=hg002_chrY_paternal_210.1;source_transcript_name=hg002_chrY_paternal_210.2;source_gene=hg002_chrY_paternal_210;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_210;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_210.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_210.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_210.1,hg002_chrY_paternal_210.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000353;gene_id=HG003_chrY_G0000136;Parent=HG003_chrY_T0000353;transcript_name=hg002_chrY_paternal_210.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000353:4;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9488184	9488265	.	+	0	source_transcript=hg002_chrY_paternal_210.1;source_transcript_name=hg002_chrY_paternal_210.2;source_gene=hg002_chrY_paternal_210;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_210;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_210.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_210.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_210.1,hg002_chrY_paternal_210.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000353;gene_id=HG003_chrY_G0000136;Parent=HG003_chrY_T0000353;transcript_name=hg002_chrY_paternal_210.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000353:4;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9488266	9488959	.	+	.	source_transcript=hg002_chrY_paternal_210.1;source_transcript_name=hg002_chrY_paternal_210.2;source_gene=hg002_chrY_paternal_210;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_210;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_210.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_210.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_210.1,hg002_chrY_paternal_210.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000353;gene_id=HG003_chrY_G0000136;Parent=HG003_chrY_T0000353;transcript_name=hg002_chrY_paternal_210.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000353:4;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9488960	9489170	.	+	.	source_transcript=hg002_chrY_paternal_210.1;source_transcript_name=hg002_chrY_paternal_210.2;source_gene=hg002_chrY_paternal_210;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_210;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_210.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_210.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_210.1,hg002_chrY_paternal_210.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000353;gene_id=HG003_chrY_G0000136;Parent=HG003_chrY_T0000353;transcript_name=hg002_chrY_paternal_210.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000353:5;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9488960	9488982	.	+	2	source_transcript=hg002_chrY_paternal_210.1;source_transcript_name=hg002_chrY_paternal_210.2;source_gene=hg002_chrY_paternal_210;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_210;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_210.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_210.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_210.1,hg002_chrY_paternal_210.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000353;gene_id=HG003_chrY_G0000136;Parent=HG003_chrY_T0000353;transcript_name=hg002_chrY_paternal_210.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000353:5;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9488980	9488982	.	+	0	source_transcript=hg002_chrY_paternal_210.1;source_transcript_name=hg002_chrY_paternal_210.2;source_gene=hg002_chrY_paternal_210;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_210;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_210.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_210.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_210.1,hg002_chrY_paternal_210.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000353;gene_id=HG003_chrY_G0000136;Parent=HG003_chrY_T0000353;transcript_name=hg002_chrY_paternal_210.2;gene_name=TSPY9;ID=stop_codon:HG003_chrY_T0000353;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9486356	9489170	100	+	.	source_transcript=hg002_chrY_paternal_210.2;source_transcript_name=hg002_chrY_paternal_210.2;source_gene=hg002_chrY_paternal_210;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_210;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_210.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_210.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_210.2,hg002_chrY_paternal_210.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000354;gene_id=HG003_chrY_G0000136;Parent=HG003_chrY_G0000136;transcript_name=hg002_chrY_paternal_210.2;gene_name=TSPY9;ID=HG003_chrY_T0000354;Name=TSPY9
HG003_chrY	CAT	exon	9486356	9486905	.	+	.	source_transcript=hg002_chrY_paternal_210.2;source_transcript_name=hg002_chrY_paternal_210.2;source_gene=hg002_chrY_paternal_210;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_210;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_210.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_210.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_210.2,hg002_chrY_paternal_210.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000354;gene_id=HG003_chrY_G0000136;Parent=HG003_chrY_T0000354;transcript_name=hg002_chrY_paternal_210.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000354:0;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9486402	9486905	.	+	0	source_transcript=hg002_chrY_paternal_210.2;source_transcript_name=hg002_chrY_paternal_210.2;source_gene=hg002_chrY_paternal_210;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_210;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_210.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_210.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_210.2,hg002_chrY_paternal_210.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000354;gene_id=HG003_chrY_G0000136;Parent=HG003_chrY_T0000354;transcript_name=hg002_chrY_paternal_210.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000354:0;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9486402	9486404	.	+	0	source_transcript=hg002_chrY_paternal_210.2;source_transcript_name=hg002_chrY_paternal_210.2;source_gene=hg002_chrY_paternal_210;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_210;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_210.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_210.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_210.2,hg002_chrY_paternal_210.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000354;gene_id=HG003_chrY_G0000136;Parent=HG003_chrY_T0000354;transcript_name=hg002_chrY_paternal_210.2;gene_name=TSPY9;ID=start_codon:HG003_chrY_T0000354;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9486906	9487512	.	+	.	source_transcript=hg002_chrY_paternal_210.2;source_transcript_name=hg002_chrY_paternal_210.2;source_gene=hg002_chrY_paternal_210;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_210;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_210.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_210.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_210.2,hg002_chrY_paternal_210.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000354;gene_id=HG003_chrY_G0000136;Parent=HG003_chrY_T0000354;transcript_name=hg002_chrY_paternal_210.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000354:0;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9487513	9487590	.	+	.	source_transcript=hg002_chrY_paternal_210.2;source_transcript_name=hg002_chrY_paternal_210.2;source_gene=hg002_chrY_paternal_210;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_210;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_210.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_210.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_210.2,hg002_chrY_paternal_210.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000354;gene_id=HG003_chrY_G0000136;Parent=HG003_chrY_T0000354;transcript_name=hg002_chrY_paternal_210.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000354:1;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9487513	9487590	.	+	0	source_transcript=hg002_chrY_paternal_210.2;source_transcript_name=hg002_chrY_paternal_210.2;source_gene=hg002_chrY_paternal_210;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_210;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_210.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_210.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_210.2,hg002_chrY_paternal_210.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000354;gene_id=HG003_chrY_G0000136;Parent=HG003_chrY_T0000354;transcript_name=hg002_chrY_paternal_210.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000354:1;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9487591	9487718	.	+	.	source_transcript=hg002_chrY_paternal_210.2;source_transcript_name=hg002_chrY_paternal_210.2;source_gene=hg002_chrY_paternal_210;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_210;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_210.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_210.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_210.2,hg002_chrY_paternal_210.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000354;gene_id=HG003_chrY_G0000136;Parent=HG003_chrY_T0000354;transcript_name=hg002_chrY_paternal_210.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000354:1;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9487719	9487830	.	+	.	source_transcript=hg002_chrY_paternal_210.2;source_transcript_name=hg002_chrY_paternal_210.2;source_gene=hg002_chrY_paternal_210;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_210;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_210.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_210.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_210.2,hg002_chrY_paternal_210.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000354;gene_id=HG003_chrY_G0000136;Parent=HG003_chrY_T0000354;transcript_name=hg002_chrY_paternal_210.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000354:2;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9487719	9487830	.	+	0	source_transcript=hg002_chrY_paternal_210.2;source_transcript_name=hg002_chrY_paternal_210.2;source_gene=hg002_chrY_paternal_210;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_210;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_210.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_210.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_210.2,hg002_chrY_paternal_210.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000354;gene_id=HG003_chrY_G0000136;Parent=HG003_chrY_T0000354;transcript_name=hg002_chrY_paternal_210.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000354:2;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9487831	9487931	.	+	.	source_transcript=hg002_chrY_paternal_210.2;source_transcript_name=hg002_chrY_paternal_210.2;source_gene=hg002_chrY_paternal_210;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_210;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_210.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_210.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_210.2,hg002_chrY_paternal_210.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000354;gene_id=HG003_chrY_G0000136;Parent=HG003_chrY_T0000354;transcript_name=hg002_chrY_paternal_210.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000354:2;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9487932	9488077	.	+	.	source_transcript=hg002_chrY_paternal_210.2;source_transcript_name=hg002_chrY_paternal_210.2;source_gene=hg002_chrY_paternal_210;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_210;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_210.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_210.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_210.2,hg002_chrY_paternal_210.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000354;gene_id=HG003_chrY_G0000136;Parent=HG003_chrY_T0000354;transcript_name=hg002_chrY_paternal_210.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000354:3;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9487932	9488077	.	+	2	source_transcript=hg002_chrY_paternal_210.2;source_transcript_name=hg002_chrY_paternal_210.2;source_gene=hg002_chrY_paternal_210;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_210;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_210.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_210.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_210.2,hg002_chrY_paternal_210.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000354;gene_id=HG003_chrY_G0000136;Parent=HG003_chrY_T0000354;transcript_name=hg002_chrY_paternal_210.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000354:3;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9488078	9488172	.	+	.	source_transcript=hg002_chrY_paternal_210.2;source_transcript_name=hg002_chrY_paternal_210.2;source_gene=hg002_chrY_paternal_210;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_210;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_210.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_210.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_210.2,hg002_chrY_paternal_210.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000354;gene_id=HG003_chrY_G0000136;Parent=HG003_chrY_T0000354;transcript_name=hg002_chrY_paternal_210.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000354:3;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9488173	9488265	.	+	.	source_transcript=hg002_chrY_paternal_210.2;source_transcript_name=hg002_chrY_paternal_210.2;source_gene=hg002_chrY_paternal_210;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_210;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_210.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_210.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_210.2,hg002_chrY_paternal_210.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000354;gene_id=HG003_chrY_G0000136;Parent=HG003_chrY_T0000354;transcript_name=hg002_chrY_paternal_210.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000354:4;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9488173	9488235	.	+	0	source_transcript=hg002_chrY_paternal_210.2;source_transcript_name=hg002_chrY_paternal_210.2;source_gene=hg002_chrY_paternal_210;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_210;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_210.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_210.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_210.2,hg002_chrY_paternal_210.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000354;gene_id=HG003_chrY_G0000136;Parent=HG003_chrY_T0000354;transcript_name=hg002_chrY_paternal_210.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000354:4;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9488233	9488235	.	+	0	source_transcript=hg002_chrY_paternal_210.2;source_transcript_name=hg002_chrY_paternal_210.2;source_gene=hg002_chrY_paternal_210;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_210;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_210.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_210.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_210.2,hg002_chrY_paternal_210.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000354;gene_id=HG003_chrY_G0000136;Parent=HG003_chrY_T0000354;transcript_name=hg002_chrY_paternal_210.2;gene_name=TSPY9;ID=stop_codon:HG003_chrY_T0000354;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9488266	9488959	.	+	.	source_transcript=hg002_chrY_paternal_210.2;source_transcript_name=hg002_chrY_paternal_210.2;source_gene=hg002_chrY_paternal_210;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_210;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_210.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_210.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_210.2,hg002_chrY_paternal_210.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000354;gene_id=HG003_chrY_G0000136;Parent=HG003_chrY_T0000354;transcript_name=hg002_chrY_paternal_210.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000354:4;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9488960	9489170	.	+	.	source_transcript=hg002_chrY_paternal_210.2;source_transcript_name=hg002_chrY_paternal_210.2;source_gene=hg002_chrY_paternal_210;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_210;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_210.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_210.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_210.2,hg002_chrY_paternal_210.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000354;gene_id=HG003_chrY_G0000136;Parent=HG003_chrY_T0000354;transcript_name=hg002_chrY_paternal_210.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000354:5;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9498439	9504042	.	-	.	source_gene_common_name=FAM197Y3;source_gene=hg002_chrY_paternal_211;alternative_source_transcripts=hg002_chrY_paternal_211.1,hg002_chrY_paternal_211.1;gene_id=HG003_chrY_G0000137;gene_biotype=lncRNA;gene_name=FAM197Y3;gene_sources=liftoff;ID=HG003_chrY_G0000137;Name=FAM197Y3
HG003_chrY	CAT	transcript	9498439	9504042	1000	-	.	source_transcript=hg002_chrY_paternal_211.1;source_transcript_name=hg002_chrY_paternal_211.1;source_gene=hg002_chrY_paternal_211;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_211;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_211.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_211.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_211.1,hg002_chrY_paternal_211.1;transcript_id=HG003_chrY_T0000355;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_G0000137;transcript_name=hg002_chrY_paternal_211.1;gene_name=FAM197Y3;ID=HG003_chrY_T0000355;Name=FAM197Y3
HG003_chrY	CAT	exon	9498439	9498498	.	-	.	source_transcript=hg002_chrY_paternal_211.1;source_transcript_name=hg002_chrY_paternal_211.1;source_gene=hg002_chrY_paternal_211;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_211;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_211.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_211.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_211.1,hg002_chrY_paternal_211.1;transcript_id=HG003_chrY_T0000355;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000355;transcript_name=hg002_chrY_paternal_211.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000355:0;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9498499	9502049	.	-	.	source_transcript=hg002_chrY_paternal_211.1;source_transcript_name=hg002_chrY_paternal_211.1;source_gene=hg002_chrY_paternal_211;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_211;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_211.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_211.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_211.1,hg002_chrY_paternal_211.1;transcript_id=HG003_chrY_T0000355;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000355;transcript_name=hg002_chrY_paternal_211.1;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000355:0;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9502050	9502208	.	-	.	source_transcript=hg002_chrY_paternal_211.1;source_transcript_name=hg002_chrY_paternal_211.1;source_gene=hg002_chrY_paternal_211;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_211;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_211.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_211.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_211.1,hg002_chrY_paternal_211.1;transcript_id=HG003_chrY_T0000355;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000355;transcript_name=hg002_chrY_paternal_211.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000355:1;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9502209	9503708	.	-	.	source_transcript=hg002_chrY_paternal_211.1;source_transcript_name=hg002_chrY_paternal_211.1;source_gene=hg002_chrY_paternal_211;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_211;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_211.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_211.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_211.1,hg002_chrY_paternal_211.1;transcript_id=HG003_chrY_T0000355;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000355;transcript_name=hg002_chrY_paternal_211.1;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000355:1;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9503709	9503854	.	-	.	source_transcript=hg002_chrY_paternal_211.1;source_transcript_name=hg002_chrY_paternal_211.1;source_gene=hg002_chrY_paternal_211;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_211;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_211.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_211.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_211.1,hg002_chrY_paternal_211.1;transcript_id=HG003_chrY_T0000355;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000355;transcript_name=hg002_chrY_paternal_211.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000355:2;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9503855	9503940	.	-	.	source_transcript=hg002_chrY_paternal_211.1;source_transcript_name=hg002_chrY_paternal_211.1;source_gene=hg002_chrY_paternal_211;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_211;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_211.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_211.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_211.1,hg002_chrY_paternal_211.1;transcript_id=HG003_chrY_T0000355;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000355;transcript_name=hg002_chrY_paternal_211.1;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000355:2;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9503941	9504042	.	-	.	source_transcript=hg002_chrY_paternal_211.1;source_transcript_name=hg002_chrY_paternal_211.1;source_gene=hg002_chrY_paternal_211;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_211;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_211.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_211.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_211.1,hg002_chrY_paternal_211.1;transcript_id=HG003_chrY_T0000355;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000355;transcript_name=hg002_chrY_paternal_211.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000355:3;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9506655	9509451	.	+	.	source_gene_common_name=TSPY10;source_gene=hg002_chrY_paternal_212;alternative_source_transcripts=hg002_chrY_paternal_212.1,hg002_chrY_paternal_212.1;gene_id=HG003_chrY_G0000138;gene_biotype=protein_coding;gene_name=TSPY10;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000138;Name=TSPY10
HG003_chrY	CAT	transcript	9506655	9509451	100	+	.	source_transcript=hg002_chrY_paternal_212.1;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.1,hg002_chrY_paternal_212.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000356;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_G0000138;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=HG003_chrY_T0000356;Name=TSPY10
HG003_chrY	CAT	exon	9506655	9507186	.	+	.	source_transcript=hg002_chrY_paternal_212.1;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.1,hg002_chrY_paternal_212.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000356;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000356;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000356:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9506701	9507186	.	+	0	source_transcript=hg002_chrY_paternal_212.1;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.1,hg002_chrY_paternal_212.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000356;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000356;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000356:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9506701	9506703	.	+	0	source_transcript=hg002_chrY_paternal_212.1;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.1,hg002_chrY_paternal_212.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000356;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000356;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000356;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9507187	9507793	.	+	.	source_transcript=hg002_chrY_paternal_212.1;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.1,hg002_chrY_paternal_212.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000356;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000356;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000356:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9507794	9507871	.	+	.	source_transcript=hg002_chrY_paternal_212.1;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.1,hg002_chrY_paternal_212.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000356;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000356;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000356:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9507794	9507871	.	+	0	source_transcript=hg002_chrY_paternal_212.1;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.1,hg002_chrY_paternal_212.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000356;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000356;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000356:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9507872	9507999	.	+	.	source_transcript=hg002_chrY_paternal_212.1;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.1,hg002_chrY_paternal_212.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000356;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000356;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000356:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9508000	9508111	.	+	.	source_transcript=hg002_chrY_paternal_212.1;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.1,hg002_chrY_paternal_212.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000356;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000356;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000356:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9508000	9508111	.	+	0	source_transcript=hg002_chrY_paternal_212.1;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.1,hg002_chrY_paternal_212.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000356;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000356;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000356:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9508112	9508212	.	+	.	source_transcript=hg002_chrY_paternal_212.1;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.1,hg002_chrY_paternal_212.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000356;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000356;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000356:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9508213	9508358	.	+	.	source_transcript=hg002_chrY_paternal_212.1;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.1,hg002_chrY_paternal_212.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000356;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000356;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000356:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9508213	9508358	.	+	2	source_transcript=hg002_chrY_paternal_212.1;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.1,hg002_chrY_paternal_212.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000356;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000356;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000356:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9508359	9508464	.	+	.	source_transcript=hg002_chrY_paternal_212.1;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.1,hg002_chrY_paternal_212.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000356;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000356;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000356:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9508465	9508546	.	+	.	source_transcript=hg002_chrY_paternal_212.1;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.1,hg002_chrY_paternal_212.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000356;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000356;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000356:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9508465	9508546	.	+	0	source_transcript=hg002_chrY_paternal_212.1;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.1,hg002_chrY_paternal_212.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000356;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000356;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000356:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9508547	9509240	.	+	.	source_transcript=hg002_chrY_paternal_212.1;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.1,hg002_chrY_paternal_212.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000356;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000356;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000356:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9509241	9509451	.	+	.	source_transcript=hg002_chrY_paternal_212.1;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.1,hg002_chrY_paternal_212.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000356;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000356;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000356:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9509241	9509263	.	+	2	source_transcript=hg002_chrY_paternal_212.1;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.1,hg002_chrY_paternal_212.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000356;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000356;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000356:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9509261	9509263	.	+	0	source_transcript=hg002_chrY_paternal_212.1;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.1,hg002_chrY_paternal_212.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000356;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000356;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000356;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9506655	9509451	100	+	.	source_transcript=hg002_chrY_paternal_212.2;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.2,hg002_chrY_paternal_212.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000357;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_G0000138;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=HG003_chrY_T0000357;Name=TSPY10
HG003_chrY	CAT	exon	9506655	9507186	.	+	.	source_transcript=hg002_chrY_paternal_212.2;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.2,hg002_chrY_paternal_212.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000357;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000357;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000357:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9506701	9507186	.	+	0	source_transcript=hg002_chrY_paternal_212.2;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.2,hg002_chrY_paternal_212.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000357;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000357;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000357:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9506701	9506703	.	+	0	source_transcript=hg002_chrY_paternal_212.2;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.2,hg002_chrY_paternal_212.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000357;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000357;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000357;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9507187	9507793	.	+	.	source_transcript=hg002_chrY_paternal_212.2;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.2,hg002_chrY_paternal_212.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000357;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000357;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000357:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9507794	9507871	.	+	.	source_transcript=hg002_chrY_paternal_212.2;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.2,hg002_chrY_paternal_212.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000357;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000357;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000357:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9507794	9507871	.	+	0	source_transcript=hg002_chrY_paternal_212.2;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.2,hg002_chrY_paternal_212.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000357;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000357;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000357:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9507872	9507999	.	+	.	source_transcript=hg002_chrY_paternal_212.2;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.2,hg002_chrY_paternal_212.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000357;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000357;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000357:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9508000	9508111	.	+	.	source_transcript=hg002_chrY_paternal_212.2;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.2,hg002_chrY_paternal_212.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000357;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000357;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000357:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9508000	9508111	.	+	0	source_transcript=hg002_chrY_paternal_212.2;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.2,hg002_chrY_paternal_212.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000357;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000357;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000357:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9508112	9508212	.	+	.	source_transcript=hg002_chrY_paternal_212.2;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.2,hg002_chrY_paternal_212.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000357;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000357;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000357:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9508213	9508358	.	+	.	source_transcript=hg002_chrY_paternal_212.2;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.2,hg002_chrY_paternal_212.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000357;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000357;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000357:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9508213	9508358	.	+	2	source_transcript=hg002_chrY_paternal_212.2;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.2,hg002_chrY_paternal_212.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000357;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000357;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000357:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9508359	9508453	.	+	.	source_transcript=hg002_chrY_paternal_212.2;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.2,hg002_chrY_paternal_212.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000357;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000357;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000357:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9508454	9508546	.	+	.	source_transcript=hg002_chrY_paternal_212.2;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.2,hg002_chrY_paternal_212.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000357;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000357;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000357:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9508454	9508516	.	+	0	source_transcript=hg002_chrY_paternal_212.2;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.2,hg002_chrY_paternal_212.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000357;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000357;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000357:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9508514	9508516	.	+	0	source_transcript=hg002_chrY_paternal_212.2;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.2,hg002_chrY_paternal_212.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000357;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000357;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000357;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9508547	9509240	.	+	.	source_transcript=hg002_chrY_paternal_212.2;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.2,hg002_chrY_paternal_212.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000357;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000357;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000357:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9509241	9509451	.	+	.	source_transcript=hg002_chrY_paternal_212.2;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.2,hg002_chrY_paternal_212.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000357;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000357;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000357:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9506655	9509451	100	+	.	source_transcript=hg002_chrY_paternal_212.3;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.3,hg002_chrY_paternal_212.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000358;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_G0000138;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=HG003_chrY_T0000358;Name=TSPY10
HG003_chrY	CAT	exon	9506655	9507186	.	+	.	source_transcript=hg002_chrY_paternal_212.3;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.3,hg002_chrY_paternal_212.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000358;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000358;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000358:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9506701	9507186	.	+	0	source_transcript=hg002_chrY_paternal_212.3;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.3,hg002_chrY_paternal_212.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000358;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000358;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000358:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9506701	9506703	.	+	0	source_transcript=hg002_chrY_paternal_212.3;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.3,hg002_chrY_paternal_212.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000358;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000358;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000358;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9507187	9507793	.	+	.	source_transcript=hg002_chrY_paternal_212.3;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.3,hg002_chrY_paternal_212.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000358;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000358;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000358:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9507794	9507871	.	+	.	source_transcript=hg002_chrY_paternal_212.3;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.3,hg002_chrY_paternal_212.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000358;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000358;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000358:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9507794	9507871	.	+	0	source_transcript=hg002_chrY_paternal_212.3;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.3,hg002_chrY_paternal_212.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000358;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000358;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000358:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9507872	9507999	.	+	.	source_transcript=hg002_chrY_paternal_212.3;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.3,hg002_chrY_paternal_212.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000358;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000358;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000358:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9508000	9508111	.	+	.	source_transcript=hg002_chrY_paternal_212.3;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.3,hg002_chrY_paternal_212.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000358;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000358;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000358:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9508000	9508111	.	+	0	source_transcript=hg002_chrY_paternal_212.3;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.3,hg002_chrY_paternal_212.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000358;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000358;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000358:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9508112	9508219	.	+	.	source_transcript=hg002_chrY_paternal_212.3;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.3,hg002_chrY_paternal_212.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000358;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000358;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000358:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9508220	9508358	.	+	.	source_transcript=hg002_chrY_paternal_212.3;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.3,hg002_chrY_paternal_212.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000358;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000358;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000358:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9508220	9508358	.	+	2	source_transcript=hg002_chrY_paternal_212.3;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.3,hg002_chrY_paternal_212.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000358;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000358;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000358:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9508359	9508464	.	+	.	source_transcript=hg002_chrY_paternal_212.3;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.3,hg002_chrY_paternal_212.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000358;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000358;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000358:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9508465	9508546	.	+	.	source_transcript=hg002_chrY_paternal_212.3;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.3,hg002_chrY_paternal_212.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000358;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000358;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000358:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9508465	9508516	.	+	1	source_transcript=hg002_chrY_paternal_212.3;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.3,hg002_chrY_paternal_212.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000358;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000358;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000358:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9508514	9508516	.	+	0	source_transcript=hg002_chrY_paternal_212.3;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.3,hg002_chrY_paternal_212.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000358;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000358;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000358;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9508547	9509240	.	+	.	source_transcript=hg002_chrY_paternal_212.3;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.3,hg002_chrY_paternal_212.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000358;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000358;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000358:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9509241	9509451	.	+	.	source_transcript=hg002_chrY_paternal_212.3;source_transcript_name=hg002_chrY_paternal_212.4;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_212.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.3,hg002_chrY_paternal_212.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000358;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000358;transcript_name=hg002_chrY_paternal_212.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000358:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9506655	9509451	1000	+	.	source_transcript=hg002_chrY_paternal_212.4;source_transcript_name=hg002_chrY_paternal_212.1;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_212.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.4,hg002_chrY_paternal_212.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000359;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_G0000138;transcript_name=hg002_chrY_paternal_212.1;gene_name=TSPY10;ID=HG003_chrY_T0000359;Name=TSPY10
HG003_chrY	CAT	exon	9506655	9507186	.	+	.	source_transcript=hg002_chrY_paternal_212.4;source_transcript_name=hg002_chrY_paternal_212.1;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_212.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.4,hg002_chrY_paternal_212.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000359;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000359;transcript_name=hg002_chrY_paternal_212.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000359:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9507187	9507793	.	+	.	source_transcript=hg002_chrY_paternal_212.4;source_transcript_name=hg002_chrY_paternal_212.1;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_212.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.4,hg002_chrY_paternal_212.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000359;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000359;transcript_name=hg002_chrY_paternal_212.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000359:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9507794	9507871	.	+	.	source_transcript=hg002_chrY_paternal_212.4;source_transcript_name=hg002_chrY_paternal_212.1;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_212.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.4,hg002_chrY_paternal_212.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000359;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000359;transcript_name=hg002_chrY_paternal_212.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000359:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9507872	9507999	.	+	.	source_transcript=hg002_chrY_paternal_212.4;source_transcript_name=hg002_chrY_paternal_212.1;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_212.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.4,hg002_chrY_paternal_212.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000359;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000359;transcript_name=hg002_chrY_paternal_212.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000359:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9508000	9508111	.	+	.	source_transcript=hg002_chrY_paternal_212.4;source_transcript_name=hg002_chrY_paternal_212.1;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_212.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.4,hg002_chrY_paternal_212.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000359;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000359;transcript_name=hg002_chrY_paternal_212.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000359:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9508112	9508219	.	+	.	source_transcript=hg002_chrY_paternal_212.4;source_transcript_name=hg002_chrY_paternal_212.1;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_212.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.4,hg002_chrY_paternal_212.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000359;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000359;transcript_name=hg002_chrY_paternal_212.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000359:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9508220	9508358	.	+	.	source_transcript=hg002_chrY_paternal_212.4;source_transcript_name=hg002_chrY_paternal_212.1;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_212.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.4,hg002_chrY_paternal_212.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000359;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000359;transcript_name=hg002_chrY_paternal_212.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000359:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9508359	9508453	.	+	.	source_transcript=hg002_chrY_paternal_212.4;source_transcript_name=hg002_chrY_paternal_212.1;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_212.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.4,hg002_chrY_paternal_212.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000359;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000359;transcript_name=hg002_chrY_paternal_212.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000359:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9508454	9508546	.	+	.	source_transcript=hg002_chrY_paternal_212.4;source_transcript_name=hg002_chrY_paternal_212.1;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_212.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.4,hg002_chrY_paternal_212.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000359;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000359;transcript_name=hg002_chrY_paternal_212.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000359:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9508547	9509240	.	+	.	source_transcript=hg002_chrY_paternal_212.4;source_transcript_name=hg002_chrY_paternal_212.1;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_212.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.4,hg002_chrY_paternal_212.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000359;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000359;transcript_name=hg002_chrY_paternal_212.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000359:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9509241	9509451	.	+	.	source_transcript=hg002_chrY_paternal_212.4;source_transcript_name=hg002_chrY_paternal_212.1;source_gene=hg002_chrY_paternal_212;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_212;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_212.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_212.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_212.4,hg002_chrY_paternal_212.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000359;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000359;transcript_name=hg002_chrY_paternal_212.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000359:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9518738	9524430	.	-	.	source_gene_common_name=FAM197Y2;source_gene=hg002_chrY_paternal_213;alternative_source_transcripts=hg002_chrY_paternal_213.1,hg002_chrY_paternal_213.1;gene_id=HG003_chrY_G0000139;gene_biotype=lncRNA;gene_name=FAM197Y2;gene_sources=liftoff;ID=HG003_chrY_G0000139;Name=FAM197Y2
HG003_chrY	CAT	transcript	9518738	9524430	1000	-	.	source_transcript=hg002_chrY_paternal_213.1;source_transcript_name=hg002_chrY_paternal_213.1;source_gene=hg002_chrY_paternal_213;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_213;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_213.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_213.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_213.1,hg002_chrY_paternal_213.1;transcript_id=HG003_chrY_T0000360;gene_id=HG003_chrY_G0000139;Parent=HG003_chrY_G0000139;transcript_name=hg002_chrY_paternal_213.1;gene_name=FAM197Y2;ID=HG003_chrY_T0000360;Name=FAM197Y2
HG003_chrY	CAT	exon	9518738	9518797	.	-	.	source_transcript=hg002_chrY_paternal_213.1;source_transcript_name=hg002_chrY_paternal_213.1;source_gene=hg002_chrY_paternal_213;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_213;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_213.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_213.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_213.1,hg002_chrY_paternal_213.1;transcript_id=HG003_chrY_T0000360;gene_id=HG003_chrY_G0000139;Parent=HG003_chrY_T0000360;transcript_name=hg002_chrY_paternal_213.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000360:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9518798	9522346	.	-	.	source_transcript=hg002_chrY_paternal_213.1;source_transcript_name=hg002_chrY_paternal_213.1;source_gene=hg002_chrY_paternal_213;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_213;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_213.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_213.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_213.1,hg002_chrY_paternal_213.1;transcript_id=HG003_chrY_T0000360;gene_id=HG003_chrY_G0000139;Parent=HG003_chrY_T0000360;transcript_name=hg002_chrY_paternal_213.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000360:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9522347	9522505	.	-	.	source_transcript=hg002_chrY_paternal_213.1;source_transcript_name=hg002_chrY_paternal_213.1;source_gene=hg002_chrY_paternal_213;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_213;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_213.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_213.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_213.1,hg002_chrY_paternal_213.1;transcript_id=HG003_chrY_T0000360;gene_id=HG003_chrY_G0000139;Parent=HG003_chrY_T0000360;transcript_name=hg002_chrY_paternal_213.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000360:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9522506	9524007	.	-	.	source_transcript=hg002_chrY_paternal_213.1;source_transcript_name=hg002_chrY_paternal_213.1;source_gene=hg002_chrY_paternal_213;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_213;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_213.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_213.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_213.1,hg002_chrY_paternal_213.1;transcript_id=HG003_chrY_T0000360;gene_id=HG003_chrY_G0000139;Parent=HG003_chrY_T0000360;transcript_name=hg002_chrY_paternal_213.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000360:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9524008	9524153	.	-	.	source_transcript=hg002_chrY_paternal_213.1;source_transcript_name=hg002_chrY_paternal_213.1;source_gene=hg002_chrY_paternal_213;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_213;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_213.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_213.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_213.1,hg002_chrY_paternal_213.1;transcript_id=HG003_chrY_T0000360;gene_id=HG003_chrY_G0000139;Parent=HG003_chrY_T0000360;transcript_name=hg002_chrY_paternal_213.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000360:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9524154	9524239	.	-	.	source_transcript=hg002_chrY_paternal_213.1;source_transcript_name=hg002_chrY_paternal_213.1;source_gene=hg002_chrY_paternal_213;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_213;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_213.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_213.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_213.1,hg002_chrY_paternal_213.1;transcript_id=HG003_chrY_T0000360;gene_id=HG003_chrY_G0000139;Parent=HG003_chrY_T0000360;transcript_name=hg002_chrY_paternal_213.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000360:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9524240	9524430	.	-	.	source_transcript=hg002_chrY_paternal_213.1;source_transcript_name=hg002_chrY_paternal_213.1;source_gene=hg002_chrY_paternal_213;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_213;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_213.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_213.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_213.1,hg002_chrY_paternal_213.1;transcript_id=HG003_chrY_T0000360;gene_id=HG003_chrY_G0000139;Parent=HG003_chrY_T0000360;transcript_name=hg002_chrY_paternal_213.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000360:3;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9526954	9529750	.	+	.	source_gene_common_name=TSPY1;source_gene=hg002_chrY_paternal_214;alternative_source_transcripts=hg002_chrY_paternal_214.1,hg002_chrY_paternal_214.1;gene_id=HG003_chrY_G0000140;gene_biotype=protein_coding;gene_name=TSPY1;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000140;Name=TSPY1
HG003_chrY	CAT	transcript	9526954	9529750	100	+	.	source_transcript=hg002_chrY_paternal_214.1;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.1,hg002_chrY_paternal_214.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000361;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_G0000140;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=HG003_chrY_T0000361;Name=TSPY1
HG003_chrY	CAT	exon	9526954	9527485	.	+	.	source_transcript=hg002_chrY_paternal_214.1;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.1,hg002_chrY_paternal_214.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000361;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000361;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000361:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9527000	9527485	.	+	0	source_transcript=hg002_chrY_paternal_214.1;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.1,hg002_chrY_paternal_214.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000361;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000361;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000361:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9527000	9527002	.	+	0	source_transcript=hg002_chrY_paternal_214.1;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.1,hg002_chrY_paternal_214.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000361;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000361;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=start_codon:HG003_chrY_T0000361;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9527486	9528092	.	+	.	source_transcript=hg002_chrY_paternal_214.1;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.1,hg002_chrY_paternal_214.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000361;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000361;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000361:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9528093	9528170	.	+	.	source_transcript=hg002_chrY_paternal_214.1;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.1,hg002_chrY_paternal_214.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000361;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000361;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000361:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9528093	9528170	.	+	0	source_transcript=hg002_chrY_paternal_214.1;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.1,hg002_chrY_paternal_214.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000361;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000361;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000361:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9528171	9528298	.	+	.	source_transcript=hg002_chrY_paternal_214.1;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.1,hg002_chrY_paternal_214.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000361;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000361;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000361:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9528299	9528410	.	+	.	source_transcript=hg002_chrY_paternal_214.1;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.1,hg002_chrY_paternal_214.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000361;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000361;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000361:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9528299	9528410	.	+	0	source_transcript=hg002_chrY_paternal_214.1;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.1,hg002_chrY_paternal_214.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000361;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000361;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000361:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9528411	9528511	.	+	.	source_transcript=hg002_chrY_paternal_214.1;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.1,hg002_chrY_paternal_214.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000361;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000361;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000361:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9528512	9528657	.	+	.	source_transcript=hg002_chrY_paternal_214.1;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.1,hg002_chrY_paternal_214.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000361;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000361;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000361:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9528512	9528657	.	+	2	source_transcript=hg002_chrY_paternal_214.1;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.1,hg002_chrY_paternal_214.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000361;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000361;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000361:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9528658	9528752	.	+	.	source_transcript=hg002_chrY_paternal_214.1;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.1,hg002_chrY_paternal_214.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000361;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000361;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000361:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9528753	9528845	.	+	.	source_transcript=hg002_chrY_paternal_214.1;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.1,hg002_chrY_paternal_214.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000361;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000361;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000361:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9528753	9528815	.	+	0	source_transcript=hg002_chrY_paternal_214.1;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.1,hg002_chrY_paternal_214.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000361;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000361;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000361:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9528813	9528815	.	+	0	source_transcript=hg002_chrY_paternal_214.1;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.1,hg002_chrY_paternal_214.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000361;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000361;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=stop_codon:HG003_chrY_T0000361;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9528846	9529539	.	+	.	source_transcript=hg002_chrY_paternal_214.1;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.1,hg002_chrY_paternal_214.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000361;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000361;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000361:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9529540	9529750	.	+	.	source_transcript=hg002_chrY_paternal_214.1;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.1,hg002_chrY_paternal_214.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000361;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000361;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000361:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9526954	9529750	100	+	.	source_transcript=hg002_chrY_paternal_214.2;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.2,hg002_chrY_paternal_214.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000362;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_G0000140;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=HG003_chrY_T0000362;Name=TSPY1
HG003_chrY	CAT	exon	9526954	9527086	.	+	.	source_transcript=hg002_chrY_paternal_214.2;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.2,hg002_chrY_paternal_214.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000362;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000362;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000362:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9527000	9527086	.	+	0	source_transcript=hg002_chrY_paternal_214.2;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.2,hg002_chrY_paternal_214.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000362;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000362;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000362:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9527000	9527002	.	+	0	source_transcript=hg002_chrY_paternal_214.2;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.2,hg002_chrY_paternal_214.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000362;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000362;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=start_codon:HG003_chrY_T0000362;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9527087	9527347	.	+	.	source_transcript=hg002_chrY_paternal_214.2;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.2,hg002_chrY_paternal_214.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000362;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000362;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000362:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9527348	9527485	.	+	.	source_transcript=hg002_chrY_paternal_214.2;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.2,hg002_chrY_paternal_214.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000362;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000362;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000362:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9527348	9527485	.	+	0	source_transcript=hg002_chrY_paternal_214.2;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.2,hg002_chrY_paternal_214.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000362;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000362;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000362:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9527486	9528092	.	+	.	source_transcript=hg002_chrY_paternal_214.2;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.2,hg002_chrY_paternal_214.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000362;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000362;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000362:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9528093	9528170	.	+	.	source_transcript=hg002_chrY_paternal_214.2;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.2,hg002_chrY_paternal_214.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000362;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000362;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000362:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9528093	9528170	.	+	0	source_transcript=hg002_chrY_paternal_214.2;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.2,hg002_chrY_paternal_214.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000362;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000362;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000362:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9528171	9528298	.	+	.	source_transcript=hg002_chrY_paternal_214.2;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.2,hg002_chrY_paternal_214.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000362;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000362;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000362:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9528299	9528410	.	+	.	source_transcript=hg002_chrY_paternal_214.2;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.2,hg002_chrY_paternal_214.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000362;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000362;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000362:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9528299	9528410	.	+	0	source_transcript=hg002_chrY_paternal_214.2;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.2,hg002_chrY_paternal_214.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000362;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000362;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000362:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9528411	9528511	.	+	.	source_transcript=hg002_chrY_paternal_214.2;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.2,hg002_chrY_paternal_214.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000362;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000362;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000362:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9528512	9528657	.	+	.	source_transcript=hg002_chrY_paternal_214.2;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.2,hg002_chrY_paternal_214.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000362;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000362;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000362:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9528512	9528657	.	+	2	source_transcript=hg002_chrY_paternal_214.2;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.2,hg002_chrY_paternal_214.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000362;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000362;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000362:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9528658	9528763	.	+	.	source_transcript=hg002_chrY_paternal_214.2;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.2,hg002_chrY_paternal_214.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000362;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000362;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000362:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9528764	9528845	.	+	.	source_transcript=hg002_chrY_paternal_214.2;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.2,hg002_chrY_paternal_214.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000362;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000362;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000362:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9528764	9528845	.	+	0	source_transcript=hg002_chrY_paternal_214.2;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.2,hg002_chrY_paternal_214.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000362;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000362;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000362:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9528846	9529539	.	+	.	source_transcript=hg002_chrY_paternal_214.2;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.2,hg002_chrY_paternal_214.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000362;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000362;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000362:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9529540	9529750	.	+	.	source_transcript=hg002_chrY_paternal_214.2;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.2,hg002_chrY_paternal_214.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000362;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000362;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000362:6;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9529540	9529562	.	+	2	source_transcript=hg002_chrY_paternal_214.2;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.2,hg002_chrY_paternal_214.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000362;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000362;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000362:6;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9529560	9529562	.	+	0	source_transcript=hg002_chrY_paternal_214.2;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.2,hg002_chrY_paternal_214.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000362;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000362;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=stop_codon:HG003_chrY_T0000362;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9526954	9529750	100	+	.	source_transcript=hg002_chrY_paternal_214.3;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.3,hg002_chrY_paternal_214.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000363;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_G0000140;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=HG003_chrY_T0000363;Name=TSPY1
HG003_chrY	CAT	exon	9526954	9527485	.	+	.	source_transcript=hg002_chrY_paternal_214.3;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.3,hg002_chrY_paternal_214.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000363;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000363;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000363:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9527000	9527485	.	+	0	source_transcript=hg002_chrY_paternal_214.3;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.3,hg002_chrY_paternal_214.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000363;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000363;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000363:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9527000	9527002	.	+	0	source_transcript=hg002_chrY_paternal_214.3;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.3,hg002_chrY_paternal_214.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000363;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000363;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=start_codon:HG003_chrY_T0000363;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9527486	9528092	.	+	.	source_transcript=hg002_chrY_paternal_214.3;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.3,hg002_chrY_paternal_214.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000363;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000363;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000363:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9528093	9528170	.	+	.	source_transcript=hg002_chrY_paternal_214.3;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.3,hg002_chrY_paternal_214.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000363;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000363;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000363:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9528093	9528170	.	+	0	source_transcript=hg002_chrY_paternal_214.3;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.3,hg002_chrY_paternal_214.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000363;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000363;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000363:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9528171	9528298	.	+	.	source_transcript=hg002_chrY_paternal_214.3;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.3,hg002_chrY_paternal_214.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000363;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000363;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000363:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9528299	9528410	.	+	.	source_transcript=hg002_chrY_paternal_214.3;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.3,hg002_chrY_paternal_214.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000363;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000363;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000363:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9528299	9528410	.	+	0	source_transcript=hg002_chrY_paternal_214.3;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.3,hg002_chrY_paternal_214.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000363;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000363;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000363:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9528411	9528511	.	+	.	source_transcript=hg002_chrY_paternal_214.3;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.3,hg002_chrY_paternal_214.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000363;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000363;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000363:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9528512	9528657	.	+	.	source_transcript=hg002_chrY_paternal_214.3;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.3,hg002_chrY_paternal_214.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000363;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000363;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000363:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9528512	9528657	.	+	2	source_transcript=hg002_chrY_paternal_214.3;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.3,hg002_chrY_paternal_214.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000363;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000363;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000363:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9528658	9528763	.	+	.	source_transcript=hg002_chrY_paternal_214.3;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.3,hg002_chrY_paternal_214.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000363;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000363;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000363:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9528764	9528845	.	+	.	source_transcript=hg002_chrY_paternal_214.3;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.3,hg002_chrY_paternal_214.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000363;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000363;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000363:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9528764	9528845	.	+	0	source_transcript=hg002_chrY_paternal_214.3;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.3,hg002_chrY_paternal_214.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000363;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000363;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000363:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9528846	9529539	.	+	.	source_transcript=hg002_chrY_paternal_214.3;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.3,hg002_chrY_paternal_214.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000363;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000363;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000363:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9529540	9529750	.	+	.	source_transcript=hg002_chrY_paternal_214.3;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.3,hg002_chrY_paternal_214.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000363;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000363;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000363:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9529540	9529562	.	+	2	source_transcript=hg002_chrY_paternal_214.3;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.3,hg002_chrY_paternal_214.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000363;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000363;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000363:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9529560	9529562	.	+	0	source_transcript=hg002_chrY_paternal_214.3;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.3,hg002_chrY_paternal_214.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000363;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000363;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=stop_codon:HG003_chrY_T0000363;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9526954	9529750	100	+	.	source_transcript=hg002_chrY_paternal_214.4;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.4,hg002_chrY_paternal_214.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000364;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_G0000140;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=HG003_chrY_T0000364;Name=TSPY1
HG003_chrY	CAT	exon	9526954	9527485	.	+	.	source_transcript=hg002_chrY_paternal_214.4;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.4,hg002_chrY_paternal_214.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000364;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000364;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000364:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9527000	9527485	.	+	0	source_transcript=hg002_chrY_paternal_214.4;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.4,hg002_chrY_paternal_214.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000364;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000364;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000364:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9527000	9527002	.	+	0	source_transcript=hg002_chrY_paternal_214.4;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.4,hg002_chrY_paternal_214.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000364;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000364;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=start_codon:HG003_chrY_T0000364;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9527486	9528092	.	+	.	source_transcript=hg002_chrY_paternal_214.4;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.4,hg002_chrY_paternal_214.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000364;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000364;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000364:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9528093	9528170	.	+	.	source_transcript=hg002_chrY_paternal_214.4;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.4,hg002_chrY_paternal_214.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000364;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000364;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000364:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9528093	9528170	.	+	0	source_transcript=hg002_chrY_paternal_214.4;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.4,hg002_chrY_paternal_214.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000364;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000364;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000364:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9528171	9528298	.	+	.	source_transcript=hg002_chrY_paternal_214.4;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.4,hg002_chrY_paternal_214.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000364;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000364;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000364:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9528299	9528410	.	+	.	source_transcript=hg002_chrY_paternal_214.4;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.4,hg002_chrY_paternal_214.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000364;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000364;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000364:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9528299	9528410	.	+	0	source_transcript=hg002_chrY_paternal_214.4;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.4,hg002_chrY_paternal_214.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000364;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000364;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000364:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9528411	9528518	.	+	.	source_transcript=hg002_chrY_paternal_214.4;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.4,hg002_chrY_paternal_214.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000364;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000364;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000364:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9528519	9528657	.	+	.	source_transcript=hg002_chrY_paternal_214.4;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.4,hg002_chrY_paternal_214.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000364;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000364;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000364:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9528519	9528657	.	+	2	source_transcript=hg002_chrY_paternal_214.4;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.4,hg002_chrY_paternal_214.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000364;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000364;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000364:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9528658	9528763	.	+	.	source_transcript=hg002_chrY_paternal_214.4;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.4,hg002_chrY_paternal_214.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000364;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000364;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000364:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9528764	9528845	.	+	.	source_transcript=hg002_chrY_paternal_214.4;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.4,hg002_chrY_paternal_214.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000364;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000364;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000364:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9528764	9528815	.	+	1	source_transcript=hg002_chrY_paternal_214.4;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.4,hg002_chrY_paternal_214.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000364;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000364;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000364:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9528813	9528815	.	+	0	source_transcript=hg002_chrY_paternal_214.4;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.4,hg002_chrY_paternal_214.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000364;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000364;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=stop_codon:HG003_chrY_T0000364;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9528846	9529539	.	+	.	source_transcript=hg002_chrY_paternal_214.4;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.4,hg002_chrY_paternal_214.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000364;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000364;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000364:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9529540	9529750	.	+	.	source_transcript=hg002_chrY_paternal_214.4;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.4,hg002_chrY_paternal_214.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000364;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000364;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000364:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9526954	9529750	1000	+	.	source_transcript=hg002_chrY_paternal_214.5;source_transcript_name=hg002_chrY_paternal_214.1;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_214.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.5,hg002_chrY_paternal_214.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000365;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_G0000140;transcript_name=hg002_chrY_paternal_214.1;gene_name=TSPY1;ID=HG003_chrY_T0000365;Name=TSPY1
HG003_chrY	CAT	exon	9526954	9527485	.	+	.	source_transcript=hg002_chrY_paternal_214.5;source_transcript_name=hg002_chrY_paternal_214.1;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_214.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.5,hg002_chrY_paternal_214.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000365;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000365;transcript_name=hg002_chrY_paternal_214.1;gene_name=TSPY1;ID=exon:HG003_chrY_T0000365:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9527486	9528092	.	+	.	source_transcript=hg002_chrY_paternal_214.5;source_transcript_name=hg002_chrY_paternal_214.1;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_214.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.5,hg002_chrY_paternal_214.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000365;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000365;transcript_name=hg002_chrY_paternal_214.1;gene_name=TSPY1;ID=intron:HG003_chrY_T0000365:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9528093	9528170	.	+	.	source_transcript=hg002_chrY_paternal_214.5;source_transcript_name=hg002_chrY_paternal_214.1;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_214.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.5,hg002_chrY_paternal_214.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000365;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000365;transcript_name=hg002_chrY_paternal_214.1;gene_name=TSPY1;ID=exon:HG003_chrY_T0000365:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9528171	9528298	.	+	.	source_transcript=hg002_chrY_paternal_214.5;source_transcript_name=hg002_chrY_paternal_214.1;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_214.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.5,hg002_chrY_paternal_214.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000365;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000365;transcript_name=hg002_chrY_paternal_214.1;gene_name=TSPY1;ID=intron:HG003_chrY_T0000365:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9528299	9528410	.	+	.	source_transcript=hg002_chrY_paternal_214.5;source_transcript_name=hg002_chrY_paternal_214.1;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_214.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.5,hg002_chrY_paternal_214.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000365;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000365;transcript_name=hg002_chrY_paternal_214.1;gene_name=TSPY1;ID=exon:HG003_chrY_T0000365:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9528411	9528518	.	+	.	source_transcript=hg002_chrY_paternal_214.5;source_transcript_name=hg002_chrY_paternal_214.1;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_214.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.5,hg002_chrY_paternal_214.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000365;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000365;transcript_name=hg002_chrY_paternal_214.1;gene_name=TSPY1;ID=intron:HG003_chrY_T0000365:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9528519	9528657	.	+	.	source_transcript=hg002_chrY_paternal_214.5;source_transcript_name=hg002_chrY_paternal_214.1;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_214.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.5,hg002_chrY_paternal_214.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000365;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000365;transcript_name=hg002_chrY_paternal_214.1;gene_name=TSPY1;ID=exon:HG003_chrY_T0000365:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9528658	9528752	.	+	.	source_transcript=hg002_chrY_paternal_214.5;source_transcript_name=hg002_chrY_paternal_214.1;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_214.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.5,hg002_chrY_paternal_214.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000365;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000365;transcript_name=hg002_chrY_paternal_214.1;gene_name=TSPY1;ID=intron:HG003_chrY_T0000365:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9528753	9528845	.	+	.	source_transcript=hg002_chrY_paternal_214.5;source_transcript_name=hg002_chrY_paternal_214.1;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_214.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.5,hg002_chrY_paternal_214.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000365;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000365;transcript_name=hg002_chrY_paternal_214.1;gene_name=TSPY1;ID=exon:HG003_chrY_T0000365:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9528846	9529539	.	+	.	source_transcript=hg002_chrY_paternal_214.5;source_transcript_name=hg002_chrY_paternal_214.1;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_214.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.5,hg002_chrY_paternal_214.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000365;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000365;transcript_name=hg002_chrY_paternal_214.1;gene_name=TSPY1;ID=intron:HG003_chrY_T0000365:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9529540	9529750	.	+	.	source_transcript=hg002_chrY_paternal_214.5;source_transcript_name=hg002_chrY_paternal_214.1;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_214.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_214.5,hg002_chrY_paternal_214.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000365;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000365;transcript_name=hg002_chrY_paternal_214.1;gene_name=TSPY1;ID=exon:HG003_chrY_T0000365:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9539043	9544736	.	-	.	source_gene_common_name=FAM197Y2;source_gene=hg002_chrY_paternal_215;alternative_source_transcripts=hg002_chrY_paternal_215.1,hg002_chrY_paternal_215.1;gene_id=HG003_chrY_G0000141;gene_biotype=lncRNA;gene_name=FAM197Y2;gene_sources=liftoff;ID=HG003_chrY_G0000141;Name=FAM197Y2
HG003_chrY	CAT	transcript	9539043	9544736	1000	-	.	source_transcript=hg002_chrY_paternal_215.1;source_transcript_name=hg002_chrY_paternal_215.1;source_gene=hg002_chrY_paternal_215;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_215;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_215.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_215.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_215.1,hg002_chrY_paternal_215.1;transcript_id=HG003_chrY_T0000366;gene_id=HG003_chrY_G0000141;Parent=HG003_chrY_G0000141;transcript_name=hg002_chrY_paternal_215.1;gene_name=FAM197Y2;ID=HG003_chrY_T0000366;Name=FAM197Y2
HG003_chrY	CAT	exon	9539043	9539102	.	-	.	source_transcript=hg002_chrY_paternal_215.1;source_transcript_name=hg002_chrY_paternal_215.1;source_gene=hg002_chrY_paternal_215;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_215;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_215.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_215.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_215.1,hg002_chrY_paternal_215.1;transcript_id=HG003_chrY_T0000366;gene_id=HG003_chrY_G0000141;Parent=HG003_chrY_T0000366;transcript_name=hg002_chrY_paternal_215.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000366:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9539103	9542652	.	-	.	source_transcript=hg002_chrY_paternal_215.1;source_transcript_name=hg002_chrY_paternal_215.1;source_gene=hg002_chrY_paternal_215;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_215;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_215.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_215.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_215.1,hg002_chrY_paternal_215.1;transcript_id=HG003_chrY_T0000366;gene_id=HG003_chrY_G0000141;Parent=HG003_chrY_T0000366;transcript_name=hg002_chrY_paternal_215.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000366:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9542653	9542811	.	-	.	source_transcript=hg002_chrY_paternal_215.1;source_transcript_name=hg002_chrY_paternal_215.1;source_gene=hg002_chrY_paternal_215;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_215;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_215.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_215.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_215.1,hg002_chrY_paternal_215.1;transcript_id=HG003_chrY_T0000366;gene_id=HG003_chrY_G0000141;Parent=HG003_chrY_T0000366;transcript_name=hg002_chrY_paternal_215.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000366:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9542812	9544313	.	-	.	source_transcript=hg002_chrY_paternal_215.1;source_transcript_name=hg002_chrY_paternal_215.1;source_gene=hg002_chrY_paternal_215;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_215;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_215.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_215.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_215.1,hg002_chrY_paternal_215.1;transcript_id=HG003_chrY_T0000366;gene_id=HG003_chrY_G0000141;Parent=HG003_chrY_T0000366;transcript_name=hg002_chrY_paternal_215.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000366:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9544314	9544459	.	-	.	source_transcript=hg002_chrY_paternal_215.1;source_transcript_name=hg002_chrY_paternal_215.1;source_gene=hg002_chrY_paternal_215;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_215;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_215.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_215.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_215.1,hg002_chrY_paternal_215.1;transcript_id=HG003_chrY_T0000366;gene_id=HG003_chrY_G0000141;Parent=HG003_chrY_T0000366;transcript_name=hg002_chrY_paternal_215.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000366:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9544460	9544545	.	-	.	source_transcript=hg002_chrY_paternal_215.1;source_transcript_name=hg002_chrY_paternal_215.1;source_gene=hg002_chrY_paternal_215;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_215;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_215.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_215.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_215.1,hg002_chrY_paternal_215.1;transcript_id=HG003_chrY_T0000366;gene_id=HG003_chrY_G0000141;Parent=HG003_chrY_T0000366;transcript_name=hg002_chrY_paternal_215.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000366:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9544546	9544736	.	-	.	source_transcript=hg002_chrY_paternal_215.1;source_transcript_name=hg002_chrY_paternal_215.1;source_gene=hg002_chrY_paternal_215;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_215;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_215.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_215.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_215.1,hg002_chrY_paternal_215.1;transcript_id=HG003_chrY_T0000366;gene_id=HG003_chrY_G0000141;Parent=HG003_chrY_T0000366;transcript_name=hg002_chrY_paternal_215.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000366:3;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9547260	9550074	.	+	.	source_gene_common_name=TSPY4;source_gene=hg002_chrY_paternal_216;alternative_source_transcripts=hg002_chrY_paternal_216.1,hg002_chrY_paternal_216.1;gene_id=HG003_chrY_G0000142;gene_biotype=protein_coding;gene_name=TSPY4;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000142;Name=TSPY4
HG003_chrY	CAT	transcript	9547260	9550074	100	+	.	source_transcript=hg002_chrY_paternal_216.1;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.1,hg002_chrY_paternal_216.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000367;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_G0000142;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=HG003_chrY_T0000367;Name=TSPY4
HG003_chrY	CAT	exon	9547260	9547809	.	+	.	source_transcript=hg002_chrY_paternal_216.1;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.1,hg002_chrY_paternal_216.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000367;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000367;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000367:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9547306	9547809	.	+	0	source_transcript=hg002_chrY_paternal_216.1;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.1,hg002_chrY_paternal_216.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000367;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000367;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000367:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9547306	9547308	.	+	0	source_transcript=hg002_chrY_paternal_216.1;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.1,hg002_chrY_paternal_216.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000367;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000367;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=start_codon:HG003_chrY_T0000367;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9547810	9548416	.	+	.	source_transcript=hg002_chrY_paternal_216.1;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.1,hg002_chrY_paternal_216.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000367;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000367;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000367:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9548417	9548494	.	+	.	source_transcript=hg002_chrY_paternal_216.1;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.1,hg002_chrY_paternal_216.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000367;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000367;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000367:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9548417	9548494	.	+	0	source_transcript=hg002_chrY_paternal_216.1;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.1,hg002_chrY_paternal_216.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000367;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000367;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000367:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9548495	9548622	.	+	.	source_transcript=hg002_chrY_paternal_216.1;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.1,hg002_chrY_paternal_216.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000367;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000367;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000367:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9548623	9548734	.	+	.	source_transcript=hg002_chrY_paternal_216.1;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.1,hg002_chrY_paternal_216.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000367;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000367;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000367:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9548623	9548734	.	+	0	source_transcript=hg002_chrY_paternal_216.1;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.1,hg002_chrY_paternal_216.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000367;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000367;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000367:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9548735	9548835	.	+	.	source_transcript=hg002_chrY_paternal_216.1;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.1,hg002_chrY_paternal_216.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000367;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000367;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000367:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9548836	9548981	.	+	.	source_transcript=hg002_chrY_paternal_216.1;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.1,hg002_chrY_paternal_216.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000367;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000367;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000367:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9548836	9548981	.	+	2	source_transcript=hg002_chrY_paternal_216.1;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.1,hg002_chrY_paternal_216.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000367;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000367;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000367:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9548982	9549087	.	+	.	source_transcript=hg002_chrY_paternal_216.1;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.1,hg002_chrY_paternal_216.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000367;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000367;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000367:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9549088	9549169	.	+	.	source_transcript=hg002_chrY_paternal_216.1;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.1,hg002_chrY_paternal_216.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000367;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000367;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000367:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9549088	9549169	.	+	0	source_transcript=hg002_chrY_paternal_216.1;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.1,hg002_chrY_paternal_216.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000367;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000367;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000367:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9549170	9549863	.	+	.	source_transcript=hg002_chrY_paternal_216.1;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.1,hg002_chrY_paternal_216.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000367;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000367;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000367:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9549864	9550074	.	+	.	source_transcript=hg002_chrY_paternal_216.1;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.1,hg002_chrY_paternal_216.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000367;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000367;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000367:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9549864	9549886	.	+	2	source_transcript=hg002_chrY_paternal_216.1;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.1,hg002_chrY_paternal_216.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000367;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000367;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000367:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9549884	9549886	.	+	0	source_transcript=hg002_chrY_paternal_216.1;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.1,hg002_chrY_paternal_216.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000367;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000367;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=stop_codon:HG003_chrY_T0000367;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9547260	9550074	100	+	.	source_transcript=hg002_chrY_paternal_216.2;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.2,hg002_chrY_paternal_216.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000368;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_G0000142;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=HG003_chrY_T0000368;Name=TSPY4
HG003_chrY	CAT	exon	9547260	9547809	.	+	.	source_transcript=hg002_chrY_paternal_216.2;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.2,hg002_chrY_paternal_216.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000368;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000368;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000368:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9547306	9547809	.	+	0	source_transcript=hg002_chrY_paternal_216.2;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.2,hg002_chrY_paternal_216.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000368;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000368;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000368:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9547306	9547308	.	+	0	source_transcript=hg002_chrY_paternal_216.2;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.2,hg002_chrY_paternal_216.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000368;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000368;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=start_codon:HG003_chrY_T0000368;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9547810	9548416	.	+	.	source_transcript=hg002_chrY_paternal_216.2;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.2,hg002_chrY_paternal_216.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000368;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000368;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000368:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9548417	9548494	.	+	.	source_transcript=hg002_chrY_paternal_216.2;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.2,hg002_chrY_paternal_216.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000368;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000368;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000368:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9548417	9548494	.	+	0	source_transcript=hg002_chrY_paternal_216.2;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.2,hg002_chrY_paternal_216.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000368;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000368;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000368:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9548495	9548622	.	+	.	source_transcript=hg002_chrY_paternal_216.2;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.2,hg002_chrY_paternal_216.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000368;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000368;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000368:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9548623	9548734	.	+	.	source_transcript=hg002_chrY_paternal_216.2;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.2,hg002_chrY_paternal_216.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000368;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000368;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000368:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9548623	9548734	.	+	0	source_transcript=hg002_chrY_paternal_216.2;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.2,hg002_chrY_paternal_216.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000368;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000368;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000368:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9548735	9548835	.	+	.	source_transcript=hg002_chrY_paternal_216.2;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.2,hg002_chrY_paternal_216.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000368;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000368;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000368:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9548836	9548981	.	+	.	source_transcript=hg002_chrY_paternal_216.2;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.2,hg002_chrY_paternal_216.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000368;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000368;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000368:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9548836	9548981	.	+	2	source_transcript=hg002_chrY_paternal_216.2;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.2,hg002_chrY_paternal_216.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000368;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000368;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000368:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9548982	9549076	.	+	.	source_transcript=hg002_chrY_paternal_216.2;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.2,hg002_chrY_paternal_216.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000368;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000368;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000368:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9549077	9549169	.	+	.	source_transcript=hg002_chrY_paternal_216.2;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.2,hg002_chrY_paternal_216.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000368;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000368;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000368:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9549077	9549139	.	+	0	source_transcript=hg002_chrY_paternal_216.2;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.2,hg002_chrY_paternal_216.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000368;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000368;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000368:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9549137	9549139	.	+	0	source_transcript=hg002_chrY_paternal_216.2;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.2,hg002_chrY_paternal_216.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000368;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000368;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=stop_codon:HG003_chrY_T0000368;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9549170	9549863	.	+	.	source_transcript=hg002_chrY_paternal_216.2;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.2,hg002_chrY_paternal_216.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000368;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000368;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000368:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9549864	9550074	.	+	.	source_transcript=hg002_chrY_paternal_216.2;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.2,hg002_chrY_paternal_216.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000368;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000368;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000368:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9547260	9550074	100	+	.	source_transcript=hg002_chrY_paternal_216.3;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.3,hg002_chrY_paternal_216.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000369;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_G0000142;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=HG003_chrY_T0000369;Name=TSPY4
HG003_chrY	CAT	exon	9547260	9547809	.	+	.	source_transcript=hg002_chrY_paternal_216.3;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.3,hg002_chrY_paternal_216.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000369;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000369;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000369:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9547306	9547809	.	+	0	source_transcript=hg002_chrY_paternal_216.3;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.3,hg002_chrY_paternal_216.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000369;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000369;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000369:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9547306	9547308	.	+	0	source_transcript=hg002_chrY_paternal_216.3;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.3,hg002_chrY_paternal_216.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000369;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000369;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=start_codon:HG003_chrY_T0000369;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9547810	9548416	.	+	.	source_transcript=hg002_chrY_paternal_216.3;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.3,hg002_chrY_paternal_216.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000369;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000369;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000369:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9548417	9548494	.	+	.	source_transcript=hg002_chrY_paternal_216.3;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.3,hg002_chrY_paternal_216.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000369;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000369;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000369:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9548417	9548494	.	+	0	source_transcript=hg002_chrY_paternal_216.3;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.3,hg002_chrY_paternal_216.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000369;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000369;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000369:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9548495	9548622	.	+	.	source_transcript=hg002_chrY_paternal_216.3;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.3,hg002_chrY_paternal_216.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000369;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000369;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000369:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9548623	9548734	.	+	.	source_transcript=hg002_chrY_paternal_216.3;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.3,hg002_chrY_paternal_216.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000369;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000369;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000369:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9548623	9548734	.	+	0	source_transcript=hg002_chrY_paternal_216.3;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.3,hg002_chrY_paternal_216.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000369;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000369;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000369:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9548735	9548842	.	+	.	source_transcript=hg002_chrY_paternal_216.3;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.3,hg002_chrY_paternal_216.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000369;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000369;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000369:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9548843	9548981	.	+	.	source_transcript=hg002_chrY_paternal_216.3;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.3,hg002_chrY_paternal_216.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000369;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000369;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000369:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9548843	9548981	.	+	2	source_transcript=hg002_chrY_paternal_216.3;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.3,hg002_chrY_paternal_216.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000369;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000369;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000369:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9548982	9549087	.	+	.	source_transcript=hg002_chrY_paternal_216.3;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.3,hg002_chrY_paternal_216.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000369;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000369;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000369:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9549088	9549169	.	+	.	source_transcript=hg002_chrY_paternal_216.3;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.3,hg002_chrY_paternal_216.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000369;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000369;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000369:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9549088	9549139	.	+	1	source_transcript=hg002_chrY_paternal_216.3;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.3,hg002_chrY_paternal_216.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000369;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000369;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000369:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9549137	9549139	.	+	0	source_transcript=hg002_chrY_paternal_216.3;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.3,hg002_chrY_paternal_216.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000369;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000369;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=stop_codon:HG003_chrY_T0000369;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9549170	9549863	.	+	.	source_transcript=hg002_chrY_paternal_216.3;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.3,hg002_chrY_paternal_216.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000369;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000369;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000369:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9549864	9550074	.	+	.	source_transcript=hg002_chrY_paternal_216.3;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.3,hg002_chrY_paternal_216.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000369;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000369;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000369:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9547260	9550074	1000	+	.	source_transcript=hg002_chrY_paternal_216.4;source_transcript_name=hg002_chrY_paternal_216.1;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_216.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.4,hg002_chrY_paternal_216.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000370;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_G0000142;transcript_name=hg002_chrY_paternal_216.1;gene_name=TSPY4;ID=HG003_chrY_T0000370;Name=TSPY4
HG003_chrY	CAT	exon	9547260	9547809	.	+	.	source_transcript=hg002_chrY_paternal_216.4;source_transcript_name=hg002_chrY_paternal_216.1;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_216.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.4,hg002_chrY_paternal_216.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000370;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000370;transcript_name=hg002_chrY_paternal_216.1;gene_name=TSPY4;ID=exon:HG003_chrY_T0000370:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9547810	9548416	.	+	.	source_transcript=hg002_chrY_paternal_216.4;source_transcript_name=hg002_chrY_paternal_216.1;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_216.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.4,hg002_chrY_paternal_216.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000370;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000370;transcript_name=hg002_chrY_paternal_216.1;gene_name=TSPY4;ID=intron:HG003_chrY_T0000370:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9548417	9548494	.	+	.	source_transcript=hg002_chrY_paternal_216.4;source_transcript_name=hg002_chrY_paternal_216.1;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_216.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.4,hg002_chrY_paternal_216.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000370;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000370;transcript_name=hg002_chrY_paternal_216.1;gene_name=TSPY4;ID=exon:HG003_chrY_T0000370:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9548495	9548622	.	+	.	source_transcript=hg002_chrY_paternal_216.4;source_transcript_name=hg002_chrY_paternal_216.1;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_216.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.4,hg002_chrY_paternal_216.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000370;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000370;transcript_name=hg002_chrY_paternal_216.1;gene_name=TSPY4;ID=intron:HG003_chrY_T0000370:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9548623	9548734	.	+	.	source_transcript=hg002_chrY_paternal_216.4;source_transcript_name=hg002_chrY_paternal_216.1;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_216.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.4,hg002_chrY_paternal_216.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000370;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000370;transcript_name=hg002_chrY_paternal_216.1;gene_name=TSPY4;ID=exon:HG003_chrY_T0000370:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9548735	9548842	.	+	.	source_transcript=hg002_chrY_paternal_216.4;source_transcript_name=hg002_chrY_paternal_216.1;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_216.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.4,hg002_chrY_paternal_216.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000370;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000370;transcript_name=hg002_chrY_paternal_216.1;gene_name=TSPY4;ID=intron:HG003_chrY_T0000370:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9548843	9548981	.	+	.	source_transcript=hg002_chrY_paternal_216.4;source_transcript_name=hg002_chrY_paternal_216.1;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_216.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.4,hg002_chrY_paternal_216.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000370;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000370;transcript_name=hg002_chrY_paternal_216.1;gene_name=TSPY4;ID=exon:HG003_chrY_T0000370:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9548982	9549076	.	+	.	source_transcript=hg002_chrY_paternal_216.4;source_transcript_name=hg002_chrY_paternal_216.1;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_216.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.4,hg002_chrY_paternal_216.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000370;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000370;transcript_name=hg002_chrY_paternal_216.1;gene_name=TSPY4;ID=intron:HG003_chrY_T0000370:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9549077	9549169	.	+	.	source_transcript=hg002_chrY_paternal_216.4;source_transcript_name=hg002_chrY_paternal_216.1;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_216.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.4,hg002_chrY_paternal_216.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000370;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000370;transcript_name=hg002_chrY_paternal_216.1;gene_name=TSPY4;ID=exon:HG003_chrY_T0000370:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9549170	9549863	.	+	.	source_transcript=hg002_chrY_paternal_216.4;source_transcript_name=hg002_chrY_paternal_216.1;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_216.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.4,hg002_chrY_paternal_216.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000370;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000370;transcript_name=hg002_chrY_paternal_216.1;gene_name=TSPY4;ID=intron:HG003_chrY_T0000370:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9549864	9550074	.	+	.	source_transcript=hg002_chrY_paternal_216.4;source_transcript_name=hg002_chrY_paternal_216.1;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_216.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_216.4,hg002_chrY_paternal_216.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000370;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000370;transcript_name=hg002_chrY_paternal_216.1;gene_name=TSPY4;ID=exon:HG003_chrY_T0000370:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9559344	9564955	.	-	.	source_gene_common_name=FAM197Y6;source_gene=hg002_chrY_paternal_217;alternative_source_transcripts=hg002_chrY_paternal_217.1,hg002_chrY_paternal_217.1;gene_id=HG003_chrY_G0000143;gene_biotype=lncRNA;gene_name=FAM197Y6;gene_sources=liftoff;ID=HG003_chrY_G0000143;Name=FAM197Y6
HG003_chrY	CAT	transcript	9559344	9564955	1000	-	.	source_transcript=hg002_chrY_paternal_217.1;source_transcript_name=hg002_chrY_paternal_217.1;source_gene=hg002_chrY_paternal_217;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_217;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_217.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_217.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y6;alternative_source_transcripts=hg002_chrY_paternal_217.1,hg002_chrY_paternal_217.1;transcript_id=HG003_chrY_T0000371;gene_id=HG003_chrY_G0000143;Parent=HG003_chrY_G0000143;transcript_name=hg002_chrY_paternal_217.1;gene_name=FAM197Y6;ID=HG003_chrY_T0000371;Name=FAM197Y6
HG003_chrY	CAT	exon	9559344	9559403	.	-	.	source_transcript=hg002_chrY_paternal_217.1;source_transcript_name=hg002_chrY_paternal_217.1;source_gene=hg002_chrY_paternal_217;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_217;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_217.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_217.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y6;alternative_source_transcripts=hg002_chrY_paternal_217.1,hg002_chrY_paternal_217.1;transcript_id=HG003_chrY_T0000371;gene_id=HG003_chrY_G0000143;Parent=HG003_chrY_T0000371;transcript_name=hg002_chrY_paternal_217.1;gene_name=FAM197Y6;ID=exon:HG003_chrY_T0000371:0;Name=FAM197Y6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9559404	9562958	.	-	.	source_transcript=hg002_chrY_paternal_217.1;source_transcript_name=hg002_chrY_paternal_217.1;source_gene=hg002_chrY_paternal_217;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_217;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_217.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_217.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y6;alternative_source_transcripts=hg002_chrY_paternal_217.1,hg002_chrY_paternal_217.1;transcript_id=HG003_chrY_T0000371;gene_id=HG003_chrY_G0000143;Parent=HG003_chrY_T0000371;transcript_name=hg002_chrY_paternal_217.1;gene_name=FAM197Y6;ID=intron:HG003_chrY_T0000371:0;Name=FAM197Y6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9562959	9563117	.	-	.	source_transcript=hg002_chrY_paternal_217.1;source_transcript_name=hg002_chrY_paternal_217.1;source_gene=hg002_chrY_paternal_217;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_217;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_217.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_217.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y6;alternative_source_transcripts=hg002_chrY_paternal_217.1,hg002_chrY_paternal_217.1;transcript_id=HG003_chrY_T0000371;gene_id=HG003_chrY_G0000143;Parent=HG003_chrY_T0000371;transcript_name=hg002_chrY_paternal_217.1;gene_name=FAM197Y6;ID=exon:HG003_chrY_T0000371:1;Name=FAM197Y6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9563118	9564621	.	-	.	source_transcript=hg002_chrY_paternal_217.1;source_transcript_name=hg002_chrY_paternal_217.1;source_gene=hg002_chrY_paternal_217;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_217;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_217.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_217.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y6;alternative_source_transcripts=hg002_chrY_paternal_217.1,hg002_chrY_paternal_217.1;transcript_id=HG003_chrY_T0000371;gene_id=HG003_chrY_G0000143;Parent=HG003_chrY_T0000371;transcript_name=hg002_chrY_paternal_217.1;gene_name=FAM197Y6;ID=intron:HG003_chrY_T0000371:1;Name=FAM197Y6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9564622	9564767	.	-	.	source_transcript=hg002_chrY_paternal_217.1;source_transcript_name=hg002_chrY_paternal_217.1;source_gene=hg002_chrY_paternal_217;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_217;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_217.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_217.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y6;alternative_source_transcripts=hg002_chrY_paternal_217.1,hg002_chrY_paternal_217.1;transcript_id=HG003_chrY_T0000371;gene_id=HG003_chrY_G0000143;Parent=HG003_chrY_T0000371;transcript_name=hg002_chrY_paternal_217.1;gene_name=FAM197Y6;ID=exon:HG003_chrY_T0000371:2;Name=FAM197Y6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9564768	9564853	.	-	.	source_transcript=hg002_chrY_paternal_217.1;source_transcript_name=hg002_chrY_paternal_217.1;source_gene=hg002_chrY_paternal_217;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_217;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_217.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_217.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y6;alternative_source_transcripts=hg002_chrY_paternal_217.1,hg002_chrY_paternal_217.1;transcript_id=HG003_chrY_T0000371;gene_id=HG003_chrY_G0000143;Parent=HG003_chrY_T0000371;transcript_name=hg002_chrY_paternal_217.1;gene_name=FAM197Y6;ID=intron:HG003_chrY_T0000371:2;Name=FAM197Y6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9564854	9564955	.	-	.	source_transcript=hg002_chrY_paternal_217.1;source_transcript_name=hg002_chrY_paternal_217.1;source_gene=hg002_chrY_paternal_217;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_217;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_217.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_217.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y6;alternative_source_transcripts=hg002_chrY_paternal_217.1,hg002_chrY_paternal_217.1;transcript_id=HG003_chrY_T0000371;gene_id=HG003_chrY_G0000143;Parent=HG003_chrY_T0000371;transcript_name=hg002_chrY_paternal_217.1;gene_name=FAM197Y6;ID=exon:HG003_chrY_T0000371:3;Name=FAM197Y6;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9567568	9570365	.	+	.	source_gene_common_name=TSPY10;source_gene=hg002_chrY_paternal_218;alternative_source_transcripts=hg002_chrY_paternal_218.1,hg002_chrY_paternal_218.1;gene_id=HG003_chrY_G0000144;gene_biotype=protein_coding;gene_name=TSPY10;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000144;Name=TSPY10
HG003_chrY	CAT	transcript	9567568	9570365	100	+	.	source_transcript=hg002_chrY_paternal_218.1;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.1,hg002_chrY_paternal_218.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000372;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_G0000144;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=HG003_chrY_T0000372;Name=TSPY10
HG003_chrY	CAT	exon	9567568	9568099	.	+	.	source_transcript=hg002_chrY_paternal_218.1;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.1,hg002_chrY_paternal_218.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000372;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000372;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000372:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9567614	9568099	.	+	0	source_transcript=hg002_chrY_paternal_218.1;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.1,hg002_chrY_paternal_218.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000372;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000372;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000372:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9567614	9567616	.	+	0	source_transcript=hg002_chrY_paternal_218.1;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.1,hg002_chrY_paternal_218.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000372;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000372;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000372;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9568100	9568706	.	+	.	source_transcript=hg002_chrY_paternal_218.1;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.1,hg002_chrY_paternal_218.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000372;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000372;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000372:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9568707	9568784	.	+	.	source_transcript=hg002_chrY_paternal_218.1;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.1,hg002_chrY_paternal_218.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000372;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000372;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000372:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9568707	9568784	.	+	0	source_transcript=hg002_chrY_paternal_218.1;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.1,hg002_chrY_paternal_218.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000372;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000372;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000372:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9568785	9568912	.	+	.	source_transcript=hg002_chrY_paternal_218.1;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.1,hg002_chrY_paternal_218.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000372;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000372;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000372:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9568913	9569024	.	+	.	source_transcript=hg002_chrY_paternal_218.1;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.1,hg002_chrY_paternal_218.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000372;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000372;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000372:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9568913	9569024	.	+	0	source_transcript=hg002_chrY_paternal_218.1;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.1,hg002_chrY_paternal_218.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000372;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000372;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000372:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9569025	9569125	.	+	.	source_transcript=hg002_chrY_paternal_218.1;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.1,hg002_chrY_paternal_218.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000372;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000372;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000372:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9569126	9569271	.	+	.	source_transcript=hg002_chrY_paternal_218.1;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.1,hg002_chrY_paternal_218.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000372;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000372;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000372:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9569126	9569271	.	+	2	source_transcript=hg002_chrY_paternal_218.1;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.1,hg002_chrY_paternal_218.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000372;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000372;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000372:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9569272	9569377	.	+	.	source_transcript=hg002_chrY_paternal_218.1;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.1,hg002_chrY_paternal_218.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000372;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000372;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000372:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9569378	9569459	.	+	.	source_transcript=hg002_chrY_paternal_218.1;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.1,hg002_chrY_paternal_218.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000372;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000372;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000372:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9569378	9569459	.	+	0	source_transcript=hg002_chrY_paternal_218.1;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.1,hg002_chrY_paternal_218.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000372;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000372;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000372:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9569460	9570153	.	+	.	source_transcript=hg002_chrY_paternal_218.1;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.1,hg002_chrY_paternal_218.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000372;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000372;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000372:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9570154	9570365	.	+	.	source_transcript=hg002_chrY_paternal_218.1;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.1,hg002_chrY_paternal_218.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000372;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000372;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000372:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9570154	9570176	.	+	2	source_transcript=hg002_chrY_paternal_218.1;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.1,hg002_chrY_paternal_218.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000372;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000372;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000372:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9570174	9570176	.	+	0	source_transcript=hg002_chrY_paternal_218.1;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.1,hg002_chrY_paternal_218.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000372;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000372;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000372;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9567568	9570365	100	+	.	source_transcript=hg002_chrY_paternal_218.2;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.2,hg002_chrY_paternal_218.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000373;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_G0000144;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=HG003_chrY_T0000373;Name=TSPY10
HG003_chrY	CAT	exon	9567568	9568099	.	+	.	source_transcript=hg002_chrY_paternal_218.2;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.2,hg002_chrY_paternal_218.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000373;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000373;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000373:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9567614	9568099	.	+	0	source_transcript=hg002_chrY_paternal_218.2;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.2,hg002_chrY_paternal_218.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000373;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000373;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000373:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9567614	9567616	.	+	0	source_transcript=hg002_chrY_paternal_218.2;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.2,hg002_chrY_paternal_218.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000373;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000373;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000373;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9568100	9568706	.	+	.	source_transcript=hg002_chrY_paternal_218.2;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.2,hg002_chrY_paternal_218.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000373;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000373;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000373:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9568707	9568784	.	+	.	source_transcript=hg002_chrY_paternal_218.2;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.2,hg002_chrY_paternal_218.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000373;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000373;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000373:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9568707	9568784	.	+	0	source_transcript=hg002_chrY_paternal_218.2;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.2,hg002_chrY_paternal_218.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000373;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000373;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000373:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9568785	9568912	.	+	.	source_transcript=hg002_chrY_paternal_218.2;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.2,hg002_chrY_paternal_218.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000373;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000373;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000373:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9568913	9569024	.	+	.	source_transcript=hg002_chrY_paternal_218.2;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.2,hg002_chrY_paternal_218.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000373;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000373;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000373:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9568913	9569024	.	+	0	source_transcript=hg002_chrY_paternal_218.2;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.2,hg002_chrY_paternal_218.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000373;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000373;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000373:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9569025	9569125	.	+	.	source_transcript=hg002_chrY_paternal_218.2;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.2,hg002_chrY_paternal_218.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000373;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000373;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000373:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9569126	9569271	.	+	.	source_transcript=hg002_chrY_paternal_218.2;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.2,hg002_chrY_paternal_218.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000373;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000373;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000373:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9569126	9569271	.	+	2	source_transcript=hg002_chrY_paternal_218.2;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.2,hg002_chrY_paternal_218.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000373;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000373;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000373:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9569272	9569366	.	+	.	source_transcript=hg002_chrY_paternal_218.2;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.2,hg002_chrY_paternal_218.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000373;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000373;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000373:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9569367	9569459	.	+	.	source_transcript=hg002_chrY_paternal_218.2;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.2,hg002_chrY_paternal_218.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000373;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000373;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000373:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9569367	9569429	.	+	0	source_transcript=hg002_chrY_paternal_218.2;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.2,hg002_chrY_paternal_218.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000373;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000373;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000373:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9569427	9569429	.	+	0	source_transcript=hg002_chrY_paternal_218.2;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.2,hg002_chrY_paternal_218.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000373;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000373;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000373;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9569460	9570153	.	+	.	source_transcript=hg002_chrY_paternal_218.2;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.2,hg002_chrY_paternal_218.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000373;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000373;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000373:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9570154	9570365	.	+	.	source_transcript=hg002_chrY_paternal_218.2;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.2,hg002_chrY_paternal_218.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000373;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000373;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000373:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9567568	9570365	100	+	.	source_transcript=hg002_chrY_paternal_218.3;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.3,hg002_chrY_paternal_218.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000374;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_G0000144;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=HG003_chrY_T0000374;Name=TSPY10
HG003_chrY	CAT	exon	9567568	9568099	.	+	.	source_transcript=hg002_chrY_paternal_218.3;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.3,hg002_chrY_paternal_218.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000374;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000374;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000374:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9567614	9568099	.	+	0	source_transcript=hg002_chrY_paternal_218.3;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.3,hg002_chrY_paternal_218.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000374;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000374;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000374:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9567614	9567616	.	+	0	source_transcript=hg002_chrY_paternal_218.3;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.3,hg002_chrY_paternal_218.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000374;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000374;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000374;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9568100	9568706	.	+	.	source_transcript=hg002_chrY_paternal_218.3;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.3,hg002_chrY_paternal_218.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000374;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000374;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000374:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9568707	9568784	.	+	.	source_transcript=hg002_chrY_paternal_218.3;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.3,hg002_chrY_paternal_218.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000374;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000374;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000374:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9568707	9568784	.	+	0	source_transcript=hg002_chrY_paternal_218.3;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.3,hg002_chrY_paternal_218.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000374;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000374;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000374:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9568785	9568912	.	+	.	source_transcript=hg002_chrY_paternal_218.3;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.3,hg002_chrY_paternal_218.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000374;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000374;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000374:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9568913	9569024	.	+	.	source_transcript=hg002_chrY_paternal_218.3;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.3,hg002_chrY_paternal_218.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000374;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000374;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000374:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9568913	9569024	.	+	0	source_transcript=hg002_chrY_paternal_218.3;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.3,hg002_chrY_paternal_218.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000374;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000374;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000374:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9569025	9569132	.	+	.	source_transcript=hg002_chrY_paternal_218.3;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.3,hg002_chrY_paternal_218.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000374;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000374;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000374:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9569133	9569271	.	+	.	source_transcript=hg002_chrY_paternal_218.3;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.3,hg002_chrY_paternal_218.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000374;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000374;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000374:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9569133	9569271	.	+	2	source_transcript=hg002_chrY_paternal_218.3;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.3,hg002_chrY_paternal_218.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000374;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000374;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000374:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9569272	9569377	.	+	.	source_transcript=hg002_chrY_paternal_218.3;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.3,hg002_chrY_paternal_218.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000374;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000374;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000374:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9569378	9569459	.	+	.	source_transcript=hg002_chrY_paternal_218.3;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.3,hg002_chrY_paternal_218.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000374;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000374;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000374:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9569378	9569429	.	+	1	source_transcript=hg002_chrY_paternal_218.3;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.3,hg002_chrY_paternal_218.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000374;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000374;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000374:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9569427	9569429	.	+	0	source_transcript=hg002_chrY_paternal_218.3;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.3,hg002_chrY_paternal_218.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000374;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000374;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000374;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9569460	9570153	.	+	.	source_transcript=hg002_chrY_paternal_218.3;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.3,hg002_chrY_paternal_218.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000374;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000374;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000374:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9570154	9570365	.	+	.	source_transcript=hg002_chrY_paternal_218.3;source_transcript_name=hg002_chrY_paternal_218.4;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_218.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.3,hg002_chrY_paternal_218.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000374;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000374;transcript_name=hg002_chrY_paternal_218.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000374:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9567568	9570365	1000	+	.	source_transcript=hg002_chrY_paternal_218.4;source_transcript_name=hg002_chrY_paternal_218.1;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_218.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.4,hg002_chrY_paternal_218.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000375;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_G0000144;transcript_name=hg002_chrY_paternal_218.1;gene_name=TSPY10;ID=HG003_chrY_T0000375;Name=TSPY10
HG003_chrY	CAT	exon	9567568	9568099	.	+	.	source_transcript=hg002_chrY_paternal_218.4;source_transcript_name=hg002_chrY_paternal_218.1;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_218.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.4,hg002_chrY_paternal_218.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000375;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000375;transcript_name=hg002_chrY_paternal_218.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000375:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9568100	9568706	.	+	.	source_transcript=hg002_chrY_paternal_218.4;source_transcript_name=hg002_chrY_paternal_218.1;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_218.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.4,hg002_chrY_paternal_218.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000375;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000375;transcript_name=hg002_chrY_paternal_218.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000375:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9568707	9568784	.	+	.	source_transcript=hg002_chrY_paternal_218.4;source_transcript_name=hg002_chrY_paternal_218.1;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_218.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.4,hg002_chrY_paternal_218.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000375;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000375;transcript_name=hg002_chrY_paternal_218.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000375:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9568785	9568912	.	+	.	source_transcript=hg002_chrY_paternal_218.4;source_transcript_name=hg002_chrY_paternal_218.1;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_218.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.4,hg002_chrY_paternal_218.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000375;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000375;transcript_name=hg002_chrY_paternal_218.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000375:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9568913	9569024	.	+	.	source_transcript=hg002_chrY_paternal_218.4;source_transcript_name=hg002_chrY_paternal_218.1;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_218.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.4,hg002_chrY_paternal_218.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000375;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000375;transcript_name=hg002_chrY_paternal_218.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000375:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9569025	9569132	.	+	.	source_transcript=hg002_chrY_paternal_218.4;source_transcript_name=hg002_chrY_paternal_218.1;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_218.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.4,hg002_chrY_paternal_218.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000375;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000375;transcript_name=hg002_chrY_paternal_218.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000375:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9569133	9569271	.	+	.	source_transcript=hg002_chrY_paternal_218.4;source_transcript_name=hg002_chrY_paternal_218.1;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_218.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.4,hg002_chrY_paternal_218.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000375;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000375;transcript_name=hg002_chrY_paternal_218.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000375:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9569272	9569366	.	+	.	source_transcript=hg002_chrY_paternal_218.4;source_transcript_name=hg002_chrY_paternal_218.1;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_218.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.4,hg002_chrY_paternal_218.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000375;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000375;transcript_name=hg002_chrY_paternal_218.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000375:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9569367	9569459	.	+	.	source_transcript=hg002_chrY_paternal_218.4;source_transcript_name=hg002_chrY_paternal_218.1;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_218.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.4,hg002_chrY_paternal_218.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000375;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000375;transcript_name=hg002_chrY_paternal_218.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000375:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9569460	9570153	.	+	.	source_transcript=hg002_chrY_paternal_218.4;source_transcript_name=hg002_chrY_paternal_218.1;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_218.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.4,hg002_chrY_paternal_218.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000375;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000375;transcript_name=hg002_chrY_paternal_218.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000375:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9570154	9570365	.	+	.	source_transcript=hg002_chrY_paternal_218.4;source_transcript_name=hg002_chrY_paternal_218.1;source_gene=hg002_chrY_paternal_218;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_218;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_218.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_218.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_218.4,hg002_chrY_paternal_218.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000375;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000375;transcript_name=hg002_chrY_paternal_218.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000375:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9579667	9585361	.	-	.	source_gene_common_name=FAM197Y2;source_gene=hg002_chrY_paternal_219;alternative_source_transcripts=hg002_chrY_paternal_219.1,hg002_chrY_paternal_219.1;gene_id=HG003_chrY_G0000145;gene_biotype=lncRNA;gene_name=FAM197Y2;gene_sources=liftoff;ID=HG003_chrY_G0000145;Name=FAM197Y2
HG003_chrY	CAT	transcript	9579667	9585361	1000	-	.	source_transcript=hg002_chrY_paternal_219.1;source_transcript_name=hg002_chrY_paternal_219.1;source_gene=hg002_chrY_paternal_219;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_219;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_219.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_219.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_219.1,hg002_chrY_paternal_219.1;transcript_id=HG003_chrY_T0000376;gene_id=HG003_chrY_G0000145;Parent=HG003_chrY_G0000145;transcript_name=hg002_chrY_paternal_219.1;gene_name=FAM197Y2;ID=HG003_chrY_T0000376;Name=FAM197Y2
HG003_chrY	CAT	exon	9579667	9579726	.	-	.	source_transcript=hg002_chrY_paternal_219.1;source_transcript_name=hg002_chrY_paternal_219.1;source_gene=hg002_chrY_paternal_219;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_219;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_219.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_219.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_219.1,hg002_chrY_paternal_219.1;transcript_id=HG003_chrY_T0000376;gene_id=HG003_chrY_G0000145;Parent=HG003_chrY_T0000376;transcript_name=hg002_chrY_paternal_219.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000376:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9579727	9583277	.	-	.	source_transcript=hg002_chrY_paternal_219.1;source_transcript_name=hg002_chrY_paternal_219.1;source_gene=hg002_chrY_paternal_219;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_219;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_219.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_219.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_219.1,hg002_chrY_paternal_219.1;transcript_id=HG003_chrY_T0000376;gene_id=HG003_chrY_G0000145;Parent=HG003_chrY_T0000376;transcript_name=hg002_chrY_paternal_219.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000376:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9583278	9583436	.	-	.	source_transcript=hg002_chrY_paternal_219.1;source_transcript_name=hg002_chrY_paternal_219.1;source_gene=hg002_chrY_paternal_219;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_219;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_219.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_219.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_219.1,hg002_chrY_paternal_219.1;transcript_id=HG003_chrY_T0000376;gene_id=HG003_chrY_G0000145;Parent=HG003_chrY_T0000376;transcript_name=hg002_chrY_paternal_219.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000376:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9583437	9584938	.	-	.	source_transcript=hg002_chrY_paternal_219.1;source_transcript_name=hg002_chrY_paternal_219.1;source_gene=hg002_chrY_paternal_219;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_219;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_219.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_219.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_219.1,hg002_chrY_paternal_219.1;transcript_id=HG003_chrY_T0000376;gene_id=HG003_chrY_G0000145;Parent=HG003_chrY_T0000376;transcript_name=hg002_chrY_paternal_219.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000376:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9584939	9585084	.	-	.	source_transcript=hg002_chrY_paternal_219.1;source_transcript_name=hg002_chrY_paternal_219.1;source_gene=hg002_chrY_paternal_219;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_219;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_219.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_219.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_219.1,hg002_chrY_paternal_219.1;transcript_id=HG003_chrY_T0000376;gene_id=HG003_chrY_G0000145;Parent=HG003_chrY_T0000376;transcript_name=hg002_chrY_paternal_219.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000376:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9585085	9585170	.	-	.	source_transcript=hg002_chrY_paternal_219.1;source_transcript_name=hg002_chrY_paternal_219.1;source_gene=hg002_chrY_paternal_219;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_219;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_219.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_219.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_219.1,hg002_chrY_paternal_219.1;transcript_id=HG003_chrY_T0000376;gene_id=HG003_chrY_G0000145;Parent=HG003_chrY_T0000376;transcript_name=hg002_chrY_paternal_219.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000376:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9585171	9585361	.	-	.	source_transcript=hg002_chrY_paternal_219.1;source_transcript_name=hg002_chrY_paternal_219.1;source_gene=hg002_chrY_paternal_219;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_219;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_219.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_219.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_219.1,hg002_chrY_paternal_219.1;transcript_id=HG003_chrY_T0000376;gene_id=HG003_chrY_G0000145;Parent=HG003_chrY_T0000376;transcript_name=hg002_chrY_paternal_219.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000376:3;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9587886	9590682	.	+	.	source_gene_common_name=TSPY1;source_gene=hg002_chrY_paternal_220;alternative_source_transcripts=hg002_chrY_paternal_220.1,hg002_chrY_paternal_220.1;gene_id=HG003_chrY_G0000146;gene_biotype=protein_coding;gene_name=TSPY1;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000146;Name=TSPY1
HG003_chrY	CAT	transcript	9587886	9590682	100	+	.	source_transcript=hg002_chrY_paternal_220.1;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.1,hg002_chrY_paternal_220.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000377;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_G0000146;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=HG003_chrY_T0000377;Name=TSPY1
HG003_chrY	CAT	exon	9587886	9588417	.	+	.	source_transcript=hg002_chrY_paternal_220.1;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.1,hg002_chrY_paternal_220.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000377;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000377;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000377:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9587932	9588417	.	+	0	source_transcript=hg002_chrY_paternal_220.1;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.1,hg002_chrY_paternal_220.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000377;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000377;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000377:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9587932	9587934	.	+	0	source_transcript=hg002_chrY_paternal_220.1;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.1,hg002_chrY_paternal_220.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000377;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000377;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=start_codon:HG003_chrY_T0000377;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9588418	9589024	.	+	.	source_transcript=hg002_chrY_paternal_220.1;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.1,hg002_chrY_paternal_220.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000377;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000377;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000377:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9589025	9589102	.	+	.	source_transcript=hg002_chrY_paternal_220.1;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.1,hg002_chrY_paternal_220.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000377;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000377;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000377:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9589025	9589102	.	+	0	source_transcript=hg002_chrY_paternal_220.1;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.1,hg002_chrY_paternal_220.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000377;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000377;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000377:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9589103	9589230	.	+	.	source_transcript=hg002_chrY_paternal_220.1;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.1,hg002_chrY_paternal_220.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000377;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000377;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000377:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9589231	9589342	.	+	.	source_transcript=hg002_chrY_paternal_220.1;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.1,hg002_chrY_paternal_220.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000377;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000377;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000377:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9589231	9589342	.	+	0	source_transcript=hg002_chrY_paternal_220.1;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.1,hg002_chrY_paternal_220.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000377;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000377;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000377:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9589343	9589443	.	+	.	source_transcript=hg002_chrY_paternal_220.1;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.1,hg002_chrY_paternal_220.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000377;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000377;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000377:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9589444	9589589	.	+	.	source_transcript=hg002_chrY_paternal_220.1;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.1,hg002_chrY_paternal_220.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000377;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000377;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000377:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9589444	9589589	.	+	2	source_transcript=hg002_chrY_paternal_220.1;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.1,hg002_chrY_paternal_220.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000377;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000377;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000377:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9589590	9589684	.	+	.	source_transcript=hg002_chrY_paternal_220.1;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.1,hg002_chrY_paternal_220.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000377;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000377;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000377:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9589685	9589777	.	+	.	source_transcript=hg002_chrY_paternal_220.1;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.1,hg002_chrY_paternal_220.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000377;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000377;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000377:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9589685	9589747	.	+	0	source_transcript=hg002_chrY_paternal_220.1;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.1,hg002_chrY_paternal_220.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000377;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000377;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000377:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9589745	9589747	.	+	0	source_transcript=hg002_chrY_paternal_220.1;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.1,hg002_chrY_paternal_220.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000377;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000377;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=stop_codon:HG003_chrY_T0000377;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9589778	9590471	.	+	.	source_transcript=hg002_chrY_paternal_220.1;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.1,hg002_chrY_paternal_220.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000377;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000377;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000377:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9590472	9590682	.	+	.	source_transcript=hg002_chrY_paternal_220.1;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.1,hg002_chrY_paternal_220.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000377;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000377;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000377:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9587886	9590682	100	+	.	source_transcript=hg002_chrY_paternal_220.2;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.2,hg002_chrY_paternal_220.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000378;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_G0000146;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=HG003_chrY_T0000378;Name=TSPY1
HG003_chrY	CAT	exon	9587886	9588018	.	+	.	source_transcript=hg002_chrY_paternal_220.2;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.2,hg002_chrY_paternal_220.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000378;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000378;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000378:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9587932	9588018	.	+	0	source_transcript=hg002_chrY_paternal_220.2;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.2,hg002_chrY_paternal_220.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000378;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000378;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000378:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9587932	9587934	.	+	0	source_transcript=hg002_chrY_paternal_220.2;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.2,hg002_chrY_paternal_220.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000378;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000378;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=start_codon:HG003_chrY_T0000378;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9588019	9588279	.	+	.	source_transcript=hg002_chrY_paternal_220.2;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.2,hg002_chrY_paternal_220.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000378;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000378;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000378:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9588280	9588417	.	+	.	source_transcript=hg002_chrY_paternal_220.2;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.2,hg002_chrY_paternal_220.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000378;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000378;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000378:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9588280	9588417	.	+	0	source_transcript=hg002_chrY_paternal_220.2;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.2,hg002_chrY_paternal_220.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000378;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000378;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000378:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9588418	9589024	.	+	.	source_transcript=hg002_chrY_paternal_220.2;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.2,hg002_chrY_paternal_220.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000378;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000378;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000378:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9589025	9589102	.	+	.	source_transcript=hg002_chrY_paternal_220.2;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.2,hg002_chrY_paternal_220.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000378;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000378;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000378:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9589025	9589102	.	+	0	source_transcript=hg002_chrY_paternal_220.2;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.2,hg002_chrY_paternal_220.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000378;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000378;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000378:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9589103	9589230	.	+	.	source_transcript=hg002_chrY_paternal_220.2;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.2,hg002_chrY_paternal_220.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000378;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000378;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000378:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9589231	9589342	.	+	.	source_transcript=hg002_chrY_paternal_220.2;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.2,hg002_chrY_paternal_220.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000378;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000378;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000378:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9589231	9589342	.	+	0	source_transcript=hg002_chrY_paternal_220.2;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.2,hg002_chrY_paternal_220.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000378;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000378;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000378:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9589343	9589443	.	+	.	source_transcript=hg002_chrY_paternal_220.2;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.2,hg002_chrY_paternal_220.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000378;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000378;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000378:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9589444	9589589	.	+	.	source_transcript=hg002_chrY_paternal_220.2;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.2,hg002_chrY_paternal_220.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000378;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000378;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000378:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9589444	9589589	.	+	2	source_transcript=hg002_chrY_paternal_220.2;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.2,hg002_chrY_paternal_220.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000378;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000378;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000378:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9589590	9589695	.	+	.	source_transcript=hg002_chrY_paternal_220.2;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.2,hg002_chrY_paternal_220.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000378;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000378;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000378:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9589696	9589777	.	+	.	source_transcript=hg002_chrY_paternal_220.2;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.2,hg002_chrY_paternal_220.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000378;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000378;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000378:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9589696	9589777	.	+	0	source_transcript=hg002_chrY_paternal_220.2;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.2,hg002_chrY_paternal_220.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000378;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000378;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000378:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9589778	9590471	.	+	.	source_transcript=hg002_chrY_paternal_220.2;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.2,hg002_chrY_paternal_220.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000378;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000378;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000378:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9590472	9590682	.	+	.	source_transcript=hg002_chrY_paternal_220.2;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.2,hg002_chrY_paternal_220.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000378;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000378;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000378:6;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9590472	9590494	.	+	2	source_transcript=hg002_chrY_paternal_220.2;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.2,hg002_chrY_paternal_220.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000378;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000378;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000378:6;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9590492	9590494	.	+	0	source_transcript=hg002_chrY_paternal_220.2;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.2,hg002_chrY_paternal_220.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000378;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000378;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=stop_codon:HG003_chrY_T0000378;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9587886	9590682	100	+	.	source_transcript=hg002_chrY_paternal_220.3;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.3,hg002_chrY_paternal_220.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000379;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_G0000146;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=HG003_chrY_T0000379;Name=TSPY1
HG003_chrY	CAT	exon	9587886	9588417	.	+	.	source_transcript=hg002_chrY_paternal_220.3;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.3,hg002_chrY_paternal_220.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000379;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000379;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000379:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9587932	9588417	.	+	0	source_transcript=hg002_chrY_paternal_220.3;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.3,hg002_chrY_paternal_220.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000379;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000379;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000379:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9587932	9587934	.	+	0	source_transcript=hg002_chrY_paternal_220.3;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.3,hg002_chrY_paternal_220.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000379;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000379;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=start_codon:HG003_chrY_T0000379;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9588418	9589024	.	+	.	source_transcript=hg002_chrY_paternal_220.3;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.3,hg002_chrY_paternal_220.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000379;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000379;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000379:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9589025	9589102	.	+	.	source_transcript=hg002_chrY_paternal_220.3;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.3,hg002_chrY_paternal_220.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000379;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000379;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000379:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9589025	9589102	.	+	0	source_transcript=hg002_chrY_paternal_220.3;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.3,hg002_chrY_paternal_220.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000379;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000379;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000379:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9589103	9589230	.	+	.	source_transcript=hg002_chrY_paternal_220.3;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.3,hg002_chrY_paternal_220.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000379;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000379;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000379:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9589231	9589342	.	+	.	source_transcript=hg002_chrY_paternal_220.3;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.3,hg002_chrY_paternal_220.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000379;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000379;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000379:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9589231	9589342	.	+	0	source_transcript=hg002_chrY_paternal_220.3;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.3,hg002_chrY_paternal_220.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000379;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000379;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000379:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9589343	9589443	.	+	.	source_transcript=hg002_chrY_paternal_220.3;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.3,hg002_chrY_paternal_220.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000379;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000379;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000379:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9589444	9589589	.	+	.	source_transcript=hg002_chrY_paternal_220.3;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.3,hg002_chrY_paternal_220.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000379;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000379;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000379:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9589444	9589589	.	+	2	source_transcript=hg002_chrY_paternal_220.3;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.3,hg002_chrY_paternal_220.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000379;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000379;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000379:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9589590	9589695	.	+	.	source_transcript=hg002_chrY_paternal_220.3;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.3,hg002_chrY_paternal_220.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000379;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000379;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000379:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9589696	9589777	.	+	.	source_transcript=hg002_chrY_paternal_220.3;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.3,hg002_chrY_paternal_220.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000379;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000379;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000379:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9589696	9589777	.	+	0	source_transcript=hg002_chrY_paternal_220.3;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.3,hg002_chrY_paternal_220.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000379;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000379;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000379:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9589778	9590471	.	+	.	source_transcript=hg002_chrY_paternal_220.3;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.3,hg002_chrY_paternal_220.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000379;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000379;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000379:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9590472	9590682	.	+	.	source_transcript=hg002_chrY_paternal_220.3;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.3,hg002_chrY_paternal_220.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000379;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000379;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000379:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9590472	9590494	.	+	2	source_transcript=hg002_chrY_paternal_220.3;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.3,hg002_chrY_paternal_220.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000379;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000379;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000379:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9590492	9590494	.	+	0	source_transcript=hg002_chrY_paternal_220.3;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.3,hg002_chrY_paternal_220.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000379;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000379;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=stop_codon:HG003_chrY_T0000379;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9587886	9590682	100	+	.	source_transcript=hg002_chrY_paternal_220.4;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.4,hg002_chrY_paternal_220.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000380;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_G0000146;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=HG003_chrY_T0000380;Name=TSPY1
HG003_chrY	CAT	exon	9587886	9588417	.	+	.	source_transcript=hg002_chrY_paternal_220.4;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.4,hg002_chrY_paternal_220.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000380;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000380;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000380:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9587932	9588417	.	+	0	source_transcript=hg002_chrY_paternal_220.4;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.4,hg002_chrY_paternal_220.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000380;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000380;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000380:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9587932	9587934	.	+	0	source_transcript=hg002_chrY_paternal_220.4;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.4,hg002_chrY_paternal_220.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000380;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000380;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=start_codon:HG003_chrY_T0000380;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9588418	9589024	.	+	.	source_transcript=hg002_chrY_paternal_220.4;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.4,hg002_chrY_paternal_220.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000380;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000380;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000380:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9589025	9589102	.	+	.	source_transcript=hg002_chrY_paternal_220.4;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.4,hg002_chrY_paternal_220.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000380;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000380;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000380:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9589025	9589102	.	+	0	source_transcript=hg002_chrY_paternal_220.4;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.4,hg002_chrY_paternal_220.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000380;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000380;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000380:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9589103	9589230	.	+	.	source_transcript=hg002_chrY_paternal_220.4;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.4,hg002_chrY_paternal_220.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000380;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000380;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000380:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9589231	9589342	.	+	.	source_transcript=hg002_chrY_paternal_220.4;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.4,hg002_chrY_paternal_220.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000380;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000380;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000380:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9589231	9589342	.	+	0	source_transcript=hg002_chrY_paternal_220.4;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.4,hg002_chrY_paternal_220.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000380;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000380;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000380:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9589343	9589450	.	+	.	source_transcript=hg002_chrY_paternal_220.4;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.4,hg002_chrY_paternal_220.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000380;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000380;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000380:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9589451	9589589	.	+	.	source_transcript=hg002_chrY_paternal_220.4;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.4,hg002_chrY_paternal_220.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000380;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000380;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000380:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9589451	9589589	.	+	2	source_transcript=hg002_chrY_paternal_220.4;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.4,hg002_chrY_paternal_220.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000380;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000380;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000380:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9589590	9589695	.	+	.	source_transcript=hg002_chrY_paternal_220.4;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.4,hg002_chrY_paternal_220.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000380;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000380;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000380:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9589696	9589777	.	+	.	source_transcript=hg002_chrY_paternal_220.4;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.4,hg002_chrY_paternal_220.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000380;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000380;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000380:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9589696	9589747	.	+	1	source_transcript=hg002_chrY_paternal_220.4;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.4,hg002_chrY_paternal_220.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000380;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000380;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000380:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9589745	9589747	.	+	0	source_transcript=hg002_chrY_paternal_220.4;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.4,hg002_chrY_paternal_220.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000380;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000380;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=stop_codon:HG003_chrY_T0000380;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9589778	9590471	.	+	.	source_transcript=hg002_chrY_paternal_220.4;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.4,hg002_chrY_paternal_220.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000380;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000380;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000380:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9590472	9590682	.	+	.	source_transcript=hg002_chrY_paternal_220.4;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.4,hg002_chrY_paternal_220.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000380;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000380;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000380:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9587886	9590682	1000	+	.	source_transcript=hg002_chrY_paternal_220.5;source_transcript_name=hg002_chrY_paternal_220.1;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_220.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.5,hg002_chrY_paternal_220.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000381;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_G0000146;transcript_name=hg002_chrY_paternal_220.1;gene_name=TSPY1;ID=HG003_chrY_T0000381;Name=TSPY1
HG003_chrY	CAT	exon	9587886	9588417	.	+	.	source_transcript=hg002_chrY_paternal_220.5;source_transcript_name=hg002_chrY_paternal_220.1;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_220.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.5,hg002_chrY_paternal_220.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000381;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000381;transcript_name=hg002_chrY_paternal_220.1;gene_name=TSPY1;ID=exon:HG003_chrY_T0000381:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9588418	9589024	.	+	.	source_transcript=hg002_chrY_paternal_220.5;source_transcript_name=hg002_chrY_paternal_220.1;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_220.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.5,hg002_chrY_paternal_220.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000381;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000381;transcript_name=hg002_chrY_paternal_220.1;gene_name=TSPY1;ID=intron:HG003_chrY_T0000381:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9589025	9589102	.	+	.	source_transcript=hg002_chrY_paternal_220.5;source_transcript_name=hg002_chrY_paternal_220.1;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_220.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.5,hg002_chrY_paternal_220.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000381;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000381;transcript_name=hg002_chrY_paternal_220.1;gene_name=TSPY1;ID=exon:HG003_chrY_T0000381:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9589103	9589230	.	+	.	source_transcript=hg002_chrY_paternal_220.5;source_transcript_name=hg002_chrY_paternal_220.1;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_220.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.5,hg002_chrY_paternal_220.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000381;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000381;transcript_name=hg002_chrY_paternal_220.1;gene_name=TSPY1;ID=intron:HG003_chrY_T0000381:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9589231	9589342	.	+	.	source_transcript=hg002_chrY_paternal_220.5;source_transcript_name=hg002_chrY_paternal_220.1;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_220.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.5,hg002_chrY_paternal_220.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000381;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000381;transcript_name=hg002_chrY_paternal_220.1;gene_name=TSPY1;ID=exon:HG003_chrY_T0000381:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9589343	9589450	.	+	.	source_transcript=hg002_chrY_paternal_220.5;source_transcript_name=hg002_chrY_paternal_220.1;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_220.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.5,hg002_chrY_paternal_220.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000381;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000381;transcript_name=hg002_chrY_paternal_220.1;gene_name=TSPY1;ID=intron:HG003_chrY_T0000381:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9589451	9589589	.	+	.	source_transcript=hg002_chrY_paternal_220.5;source_transcript_name=hg002_chrY_paternal_220.1;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_220.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.5,hg002_chrY_paternal_220.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000381;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000381;transcript_name=hg002_chrY_paternal_220.1;gene_name=TSPY1;ID=exon:HG003_chrY_T0000381:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9589590	9589684	.	+	.	source_transcript=hg002_chrY_paternal_220.5;source_transcript_name=hg002_chrY_paternal_220.1;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_220.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.5,hg002_chrY_paternal_220.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000381;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000381;transcript_name=hg002_chrY_paternal_220.1;gene_name=TSPY1;ID=intron:HG003_chrY_T0000381:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9589685	9589777	.	+	.	source_transcript=hg002_chrY_paternal_220.5;source_transcript_name=hg002_chrY_paternal_220.1;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_220.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.5,hg002_chrY_paternal_220.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000381;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000381;transcript_name=hg002_chrY_paternal_220.1;gene_name=TSPY1;ID=exon:HG003_chrY_T0000381:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9589778	9590471	.	+	.	source_transcript=hg002_chrY_paternal_220.5;source_transcript_name=hg002_chrY_paternal_220.1;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_220.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.5,hg002_chrY_paternal_220.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000381;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000381;transcript_name=hg002_chrY_paternal_220.1;gene_name=TSPY1;ID=intron:HG003_chrY_T0000381:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9590472	9590682	.	+	.	source_transcript=hg002_chrY_paternal_220.5;source_transcript_name=hg002_chrY_paternal_220.1;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_220.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.5,hg002_chrY_paternal_220.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000381;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000381;transcript_name=hg002_chrY_paternal_220.1;gene_name=TSPY1;ID=exon:HG003_chrY_T0000381:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9599971	9605661	.	-	.	source_gene_common_name=FAM197Y2;source_gene=hg002_chrY_paternal_221;alternative_source_transcripts=hg002_chrY_paternal_221.1,hg002_chrY_paternal_221.1;gene_id=HG003_chrY_G0000147;gene_biotype=lncRNA;gene_name=FAM197Y2;gene_sources=liftoff;ID=HG003_chrY_G0000147;Name=FAM197Y2
HG003_chrY	CAT	transcript	9599971	9605661	1000	-	.	source_transcript=hg002_chrY_paternal_221.1;source_transcript_name=hg002_chrY_paternal_221.1;source_gene=hg002_chrY_paternal_221;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_221;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_221.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_221.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_221.1,hg002_chrY_paternal_221.1;transcript_id=HG003_chrY_T0000382;gene_id=HG003_chrY_G0000147;Parent=HG003_chrY_G0000147;transcript_name=hg002_chrY_paternal_221.1;gene_name=FAM197Y2;ID=HG003_chrY_T0000382;Name=FAM197Y2
HG003_chrY	CAT	exon	9599971	9600030	.	-	.	source_transcript=hg002_chrY_paternal_221.1;source_transcript_name=hg002_chrY_paternal_221.1;source_gene=hg002_chrY_paternal_221;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_221;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_221.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_221.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_221.1,hg002_chrY_paternal_221.1;transcript_id=HG003_chrY_T0000382;gene_id=HG003_chrY_G0000147;Parent=HG003_chrY_T0000382;transcript_name=hg002_chrY_paternal_221.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000382:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9600031	9603579	.	-	.	source_transcript=hg002_chrY_paternal_221.1;source_transcript_name=hg002_chrY_paternal_221.1;source_gene=hg002_chrY_paternal_221;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_221;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_221.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_221.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_221.1,hg002_chrY_paternal_221.1;transcript_id=HG003_chrY_T0000382;gene_id=HG003_chrY_G0000147;Parent=HG003_chrY_T0000382;transcript_name=hg002_chrY_paternal_221.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000382:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9603580	9603738	.	-	.	source_transcript=hg002_chrY_paternal_221.1;source_transcript_name=hg002_chrY_paternal_221.1;source_gene=hg002_chrY_paternal_221;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_221;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_221.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_221.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_221.1,hg002_chrY_paternal_221.1;transcript_id=HG003_chrY_T0000382;gene_id=HG003_chrY_G0000147;Parent=HG003_chrY_T0000382;transcript_name=hg002_chrY_paternal_221.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000382:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9603739	9605238	.	-	.	source_transcript=hg002_chrY_paternal_221.1;source_transcript_name=hg002_chrY_paternal_221.1;source_gene=hg002_chrY_paternal_221;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_221;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_221.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_221.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_221.1,hg002_chrY_paternal_221.1;transcript_id=HG003_chrY_T0000382;gene_id=HG003_chrY_G0000147;Parent=HG003_chrY_T0000382;transcript_name=hg002_chrY_paternal_221.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000382:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9605239	9605384	.	-	.	source_transcript=hg002_chrY_paternal_221.1;source_transcript_name=hg002_chrY_paternal_221.1;source_gene=hg002_chrY_paternal_221;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_221;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_221.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_221.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_221.1,hg002_chrY_paternal_221.1;transcript_id=HG003_chrY_T0000382;gene_id=HG003_chrY_G0000147;Parent=HG003_chrY_T0000382;transcript_name=hg002_chrY_paternal_221.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000382:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9605385	9605470	.	-	.	source_transcript=hg002_chrY_paternal_221.1;source_transcript_name=hg002_chrY_paternal_221.1;source_gene=hg002_chrY_paternal_221;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_221;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_221.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_221.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_221.1,hg002_chrY_paternal_221.1;transcript_id=HG003_chrY_T0000382;gene_id=HG003_chrY_G0000147;Parent=HG003_chrY_T0000382;transcript_name=hg002_chrY_paternal_221.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000382:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9605471	9605661	.	-	.	source_transcript=hg002_chrY_paternal_221.1;source_transcript_name=hg002_chrY_paternal_221.1;source_gene=hg002_chrY_paternal_221;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_221;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_221.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_221.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_221.1,hg002_chrY_paternal_221.1;transcript_id=HG003_chrY_T0000382;gene_id=HG003_chrY_G0000147;Parent=HG003_chrY_T0000382;transcript_name=hg002_chrY_paternal_221.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000382:3;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9608185	9610999	.	+	.	source_gene_common_name=TSPY4;source_gene=hg002_chrY_paternal_222;alternative_source_transcripts=hg002_chrY_paternal_222.1,hg002_chrY_paternal_222.1;gene_id=HG003_chrY_G0000148;gene_biotype=protein_coding;gene_name=TSPY4;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000148;Name=TSPY4
HG003_chrY	CAT	transcript	9608185	9610999	100	+	.	source_transcript=hg002_chrY_paternal_222.1;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.1,hg002_chrY_paternal_222.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000383;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_G0000148;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=HG003_chrY_T0000383;Name=TSPY4
HG003_chrY	CAT	exon	9608185	9608734	.	+	.	source_transcript=hg002_chrY_paternal_222.1;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.1,hg002_chrY_paternal_222.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000383;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000383;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000383:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9608231	9608734	.	+	0	source_transcript=hg002_chrY_paternal_222.1;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.1,hg002_chrY_paternal_222.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000383;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000383;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000383:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9608231	9608233	.	+	0	source_transcript=hg002_chrY_paternal_222.1;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.1,hg002_chrY_paternal_222.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000383;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000383;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=start_codon:HG003_chrY_T0000383;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9608735	9609341	.	+	.	source_transcript=hg002_chrY_paternal_222.1;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.1,hg002_chrY_paternal_222.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000383;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000383;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000383:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9609342	9609419	.	+	.	source_transcript=hg002_chrY_paternal_222.1;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.1,hg002_chrY_paternal_222.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000383;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000383;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000383:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9609342	9609419	.	+	0	source_transcript=hg002_chrY_paternal_222.1;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.1,hg002_chrY_paternal_222.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000383;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000383;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000383:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9609420	9609547	.	+	.	source_transcript=hg002_chrY_paternal_222.1;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.1,hg002_chrY_paternal_222.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000383;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000383;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000383:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9609548	9609659	.	+	.	source_transcript=hg002_chrY_paternal_222.1;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.1,hg002_chrY_paternal_222.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000383;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000383;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000383:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9609548	9609659	.	+	0	source_transcript=hg002_chrY_paternal_222.1;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.1,hg002_chrY_paternal_222.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000383;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000383;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000383:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9609660	9609760	.	+	.	source_transcript=hg002_chrY_paternal_222.1;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.1,hg002_chrY_paternal_222.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000383;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000383;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000383:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9609761	9609906	.	+	.	source_transcript=hg002_chrY_paternal_222.1;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.1,hg002_chrY_paternal_222.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000383;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000383;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000383:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9609761	9609906	.	+	2	source_transcript=hg002_chrY_paternal_222.1;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.1,hg002_chrY_paternal_222.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000383;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000383;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000383:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9609907	9610012	.	+	.	source_transcript=hg002_chrY_paternal_222.1;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.1,hg002_chrY_paternal_222.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000383;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000383;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000383:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9610013	9610094	.	+	.	source_transcript=hg002_chrY_paternal_222.1;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.1,hg002_chrY_paternal_222.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000383;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000383;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000383:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9610013	9610094	.	+	0	source_transcript=hg002_chrY_paternal_222.1;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.1,hg002_chrY_paternal_222.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000383;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000383;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000383:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9610095	9610788	.	+	.	source_transcript=hg002_chrY_paternal_222.1;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.1,hg002_chrY_paternal_222.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000383;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000383;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000383:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9610789	9610999	.	+	.	source_transcript=hg002_chrY_paternal_222.1;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.1,hg002_chrY_paternal_222.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000383;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000383;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000383:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9610789	9610811	.	+	2	source_transcript=hg002_chrY_paternal_222.1;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.1,hg002_chrY_paternal_222.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000383;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000383;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000383:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9610809	9610811	.	+	0	source_transcript=hg002_chrY_paternal_222.1;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.1,hg002_chrY_paternal_222.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000383;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000383;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=stop_codon:HG003_chrY_T0000383;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9608185	9610999	100	+	.	source_transcript=hg002_chrY_paternal_222.2;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.2,hg002_chrY_paternal_222.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000384;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_G0000148;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=HG003_chrY_T0000384;Name=TSPY4
HG003_chrY	CAT	exon	9608185	9608734	.	+	.	source_transcript=hg002_chrY_paternal_222.2;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.2,hg002_chrY_paternal_222.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000384;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000384;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000384:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9608231	9608734	.	+	0	source_transcript=hg002_chrY_paternal_222.2;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.2,hg002_chrY_paternal_222.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000384;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000384;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000384:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9608231	9608233	.	+	0	source_transcript=hg002_chrY_paternal_222.2;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.2,hg002_chrY_paternal_222.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000384;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000384;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=start_codon:HG003_chrY_T0000384;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9608735	9609341	.	+	.	source_transcript=hg002_chrY_paternal_222.2;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.2,hg002_chrY_paternal_222.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000384;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000384;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000384:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9609342	9609419	.	+	.	source_transcript=hg002_chrY_paternal_222.2;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.2,hg002_chrY_paternal_222.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000384;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000384;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000384:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9609342	9609419	.	+	0	source_transcript=hg002_chrY_paternal_222.2;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.2,hg002_chrY_paternal_222.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000384;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000384;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000384:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9609420	9609547	.	+	.	source_transcript=hg002_chrY_paternal_222.2;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.2,hg002_chrY_paternal_222.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000384;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000384;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000384:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9609548	9609659	.	+	.	source_transcript=hg002_chrY_paternal_222.2;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.2,hg002_chrY_paternal_222.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000384;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000384;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000384:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9609548	9609659	.	+	0	source_transcript=hg002_chrY_paternal_222.2;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.2,hg002_chrY_paternal_222.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000384;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000384;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000384:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9609660	9609760	.	+	.	source_transcript=hg002_chrY_paternal_222.2;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.2,hg002_chrY_paternal_222.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000384;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000384;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000384:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9609761	9609906	.	+	.	source_transcript=hg002_chrY_paternal_222.2;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.2,hg002_chrY_paternal_222.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000384;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000384;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000384:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9609761	9609906	.	+	2	source_transcript=hg002_chrY_paternal_222.2;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.2,hg002_chrY_paternal_222.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000384;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000384;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000384:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9609907	9610001	.	+	.	source_transcript=hg002_chrY_paternal_222.2;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.2,hg002_chrY_paternal_222.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000384;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000384;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000384:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9610002	9610094	.	+	.	source_transcript=hg002_chrY_paternal_222.2;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.2,hg002_chrY_paternal_222.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000384;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000384;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000384:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9610002	9610064	.	+	0	source_transcript=hg002_chrY_paternal_222.2;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.2,hg002_chrY_paternal_222.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000384;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000384;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000384:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9610062	9610064	.	+	0	source_transcript=hg002_chrY_paternal_222.2;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.2,hg002_chrY_paternal_222.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000384;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000384;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=stop_codon:HG003_chrY_T0000384;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9610095	9610788	.	+	.	source_transcript=hg002_chrY_paternal_222.2;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.2,hg002_chrY_paternal_222.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000384;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000384;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000384:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9610789	9610999	.	+	.	source_transcript=hg002_chrY_paternal_222.2;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.2,hg002_chrY_paternal_222.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000384;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000384;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000384:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9608185	9610999	100	+	.	source_transcript=hg002_chrY_paternal_222.3;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.3,hg002_chrY_paternal_222.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000385;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_G0000148;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=HG003_chrY_T0000385;Name=TSPY4
HG003_chrY	CAT	exon	9608185	9608734	.	+	.	source_transcript=hg002_chrY_paternal_222.3;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.3,hg002_chrY_paternal_222.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000385;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000385;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000385:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9608231	9608734	.	+	0	source_transcript=hg002_chrY_paternal_222.3;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.3,hg002_chrY_paternal_222.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000385;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000385;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000385:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9608231	9608233	.	+	0	source_transcript=hg002_chrY_paternal_222.3;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.3,hg002_chrY_paternal_222.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000385;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000385;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=start_codon:HG003_chrY_T0000385;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9608735	9609341	.	+	.	source_transcript=hg002_chrY_paternal_222.3;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.3,hg002_chrY_paternal_222.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000385;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000385;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000385:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9609342	9609419	.	+	.	source_transcript=hg002_chrY_paternal_222.3;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.3,hg002_chrY_paternal_222.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000385;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000385;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000385:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9609342	9609419	.	+	0	source_transcript=hg002_chrY_paternal_222.3;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.3,hg002_chrY_paternal_222.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000385;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000385;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000385:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9609420	9609547	.	+	.	source_transcript=hg002_chrY_paternal_222.3;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.3,hg002_chrY_paternal_222.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000385;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000385;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000385:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9609548	9609659	.	+	.	source_transcript=hg002_chrY_paternal_222.3;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.3,hg002_chrY_paternal_222.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000385;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000385;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000385:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9609548	9609659	.	+	0	source_transcript=hg002_chrY_paternal_222.3;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.3,hg002_chrY_paternal_222.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000385;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000385;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000385:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9609660	9609767	.	+	.	source_transcript=hg002_chrY_paternal_222.3;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.3,hg002_chrY_paternal_222.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000385;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000385;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000385:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9609768	9609906	.	+	.	source_transcript=hg002_chrY_paternal_222.3;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.3,hg002_chrY_paternal_222.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000385;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000385;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000385:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9609768	9609906	.	+	2	source_transcript=hg002_chrY_paternal_222.3;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.3,hg002_chrY_paternal_222.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000385;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000385;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000385:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9609907	9610012	.	+	.	source_transcript=hg002_chrY_paternal_222.3;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.3,hg002_chrY_paternal_222.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000385;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000385;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000385:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9610013	9610094	.	+	.	source_transcript=hg002_chrY_paternal_222.3;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.3,hg002_chrY_paternal_222.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000385;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000385;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000385:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9610013	9610064	.	+	1	source_transcript=hg002_chrY_paternal_222.3;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.3,hg002_chrY_paternal_222.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000385;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000385;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000385:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9610062	9610064	.	+	0	source_transcript=hg002_chrY_paternal_222.3;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.3,hg002_chrY_paternal_222.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000385;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000385;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=stop_codon:HG003_chrY_T0000385;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9610095	9610788	.	+	.	source_transcript=hg002_chrY_paternal_222.3;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.3,hg002_chrY_paternal_222.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000385;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000385;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=intron:HG003_chrY_T0000385:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9610789	9610999	.	+	.	source_transcript=hg002_chrY_paternal_222.3;source_transcript_name=hg002_chrY_paternal_222.4;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_222.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.3,hg002_chrY_paternal_222.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000385;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000385;transcript_name=hg002_chrY_paternal_222.4;gene_name=TSPY4;ID=exon:HG003_chrY_T0000385:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9608185	9610999	1000	+	.	source_transcript=hg002_chrY_paternal_222.4;source_transcript_name=hg002_chrY_paternal_222.1;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_222.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.4,hg002_chrY_paternal_222.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000386;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_G0000148;transcript_name=hg002_chrY_paternal_222.1;gene_name=TSPY4;ID=HG003_chrY_T0000386;Name=TSPY4
HG003_chrY	CAT	exon	9608185	9608734	.	+	.	source_transcript=hg002_chrY_paternal_222.4;source_transcript_name=hg002_chrY_paternal_222.1;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_222.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.4,hg002_chrY_paternal_222.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000386;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000386;transcript_name=hg002_chrY_paternal_222.1;gene_name=TSPY4;ID=exon:HG003_chrY_T0000386:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9608735	9609341	.	+	.	source_transcript=hg002_chrY_paternal_222.4;source_transcript_name=hg002_chrY_paternal_222.1;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_222.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.4,hg002_chrY_paternal_222.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000386;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000386;transcript_name=hg002_chrY_paternal_222.1;gene_name=TSPY4;ID=intron:HG003_chrY_T0000386:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9609342	9609419	.	+	.	source_transcript=hg002_chrY_paternal_222.4;source_transcript_name=hg002_chrY_paternal_222.1;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_222.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.4,hg002_chrY_paternal_222.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000386;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000386;transcript_name=hg002_chrY_paternal_222.1;gene_name=TSPY4;ID=exon:HG003_chrY_T0000386:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9609420	9609547	.	+	.	source_transcript=hg002_chrY_paternal_222.4;source_transcript_name=hg002_chrY_paternal_222.1;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_222.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.4,hg002_chrY_paternal_222.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000386;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000386;transcript_name=hg002_chrY_paternal_222.1;gene_name=TSPY4;ID=intron:HG003_chrY_T0000386:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9609548	9609659	.	+	.	source_transcript=hg002_chrY_paternal_222.4;source_transcript_name=hg002_chrY_paternal_222.1;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_222.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.4,hg002_chrY_paternal_222.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000386;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000386;transcript_name=hg002_chrY_paternal_222.1;gene_name=TSPY4;ID=exon:HG003_chrY_T0000386:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9609660	9609767	.	+	.	source_transcript=hg002_chrY_paternal_222.4;source_transcript_name=hg002_chrY_paternal_222.1;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_222.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.4,hg002_chrY_paternal_222.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000386;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000386;transcript_name=hg002_chrY_paternal_222.1;gene_name=TSPY4;ID=intron:HG003_chrY_T0000386:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9609768	9609906	.	+	.	source_transcript=hg002_chrY_paternal_222.4;source_transcript_name=hg002_chrY_paternal_222.1;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_222.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.4,hg002_chrY_paternal_222.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000386;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000386;transcript_name=hg002_chrY_paternal_222.1;gene_name=TSPY4;ID=exon:HG003_chrY_T0000386:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9609907	9610001	.	+	.	source_transcript=hg002_chrY_paternal_222.4;source_transcript_name=hg002_chrY_paternal_222.1;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_222.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.4,hg002_chrY_paternal_222.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000386;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000386;transcript_name=hg002_chrY_paternal_222.1;gene_name=TSPY4;ID=intron:HG003_chrY_T0000386:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9610002	9610094	.	+	.	source_transcript=hg002_chrY_paternal_222.4;source_transcript_name=hg002_chrY_paternal_222.1;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_222.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.4,hg002_chrY_paternal_222.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000386;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000386;transcript_name=hg002_chrY_paternal_222.1;gene_name=TSPY4;ID=exon:HG003_chrY_T0000386:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9610095	9610788	.	+	.	source_transcript=hg002_chrY_paternal_222.4;source_transcript_name=hg002_chrY_paternal_222.1;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_222.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.4,hg002_chrY_paternal_222.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000386;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000386;transcript_name=hg002_chrY_paternal_222.1;gene_name=TSPY4;ID=intron:HG003_chrY_T0000386:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9610789	9610999	.	+	.	source_transcript=hg002_chrY_paternal_222.4;source_transcript_name=hg002_chrY_paternal_222.1;source_gene=hg002_chrY_paternal_222;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_222;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_222.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_222.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_222.4,hg002_chrY_paternal_222.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000386;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000386;transcript_name=hg002_chrY_paternal_222.1;gene_name=TSPY4;ID=exon:HG003_chrY_T0000386:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9620282	9625886	.	-	.	source_gene_common_name=FAM197Y4;source_gene=hg002_chrY_paternal_223;alternative_source_transcripts=hg002_chrY_paternal_223.1,hg002_chrY_paternal_223.1;gene_id=HG003_chrY_G0000149;gene_biotype=lncRNA;gene_name=FAM197Y4;gene_sources=liftoff;ID=HG003_chrY_G0000149;Name=FAM197Y4
HG003_chrY	CAT	transcript	9620282	9625886	1000	-	.	source_transcript=hg002_chrY_paternal_223.1;source_transcript_name=hg002_chrY_paternal_223.1;source_gene=hg002_chrY_paternal_223;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_223;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_223.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_223.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y4;alternative_source_transcripts=hg002_chrY_paternal_223.1,hg002_chrY_paternal_223.1;transcript_id=HG003_chrY_T0000387;gene_id=HG003_chrY_G0000149;Parent=HG003_chrY_G0000149;transcript_name=hg002_chrY_paternal_223.1;gene_name=FAM197Y4;ID=HG003_chrY_T0000387;Name=FAM197Y4
HG003_chrY	CAT	exon	9620282	9620341	.	-	.	source_transcript=hg002_chrY_paternal_223.1;source_transcript_name=hg002_chrY_paternal_223.1;source_gene=hg002_chrY_paternal_223;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_223;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_223.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_223.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y4;alternative_source_transcripts=hg002_chrY_paternal_223.1,hg002_chrY_paternal_223.1;transcript_id=HG003_chrY_T0000387;gene_id=HG003_chrY_G0000149;Parent=HG003_chrY_T0000387;transcript_name=hg002_chrY_paternal_223.1;gene_name=FAM197Y4;ID=exon:HG003_chrY_T0000387:0;Name=FAM197Y4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9620342	9623895	.	-	.	source_transcript=hg002_chrY_paternal_223.1;source_transcript_name=hg002_chrY_paternal_223.1;source_gene=hg002_chrY_paternal_223;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_223;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_223.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_223.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y4;alternative_source_transcripts=hg002_chrY_paternal_223.1,hg002_chrY_paternal_223.1;transcript_id=HG003_chrY_T0000387;gene_id=HG003_chrY_G0000149;Parent=HG003_chrY_T0000387;transcript_name=hg002_chrY_paternal_223.1;gene_name=FAM197Y4;ID=intron:HG003_chrY_T0000387:0;Name=FAM197Y4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9623896	9624054	.	-	.	source_transcript=hg002_chrY_paternal_223.1;source_transcript_name=hg002_chrY_paternal_223.1;source_gene=hg002_chrY_paternal_223;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_223;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_223.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_223.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y4;alternative_source_transcripts=hg002_chrY_paternal_223.1,hg002_chrY_paternal_223.1;transcript_id=HG003_chrY_T0000387;gene_id=HG003_chrY_G0000149;Parent=HG003_chrY_T0000387;transcript_name=hg002_chrY_paternal_223.1;gene_name=FAM197Y4;ID=exon:HG003_chrY_T0000387:1;Name=FAM197Y4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9624055	9625552	.	-	.	source_transcript=hg002_chrY_paternal_223.1;source_transcript_name=hg002_chrY_paternal_223.1;source_gene=hg002_chrY_paternal_223;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_223;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_223.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_223.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y4;alternative_source_transcripts=hg002_chrY_paternal_223.1,hg002_chrY_paternal_223.1;transcript_id=HG003_chrY_T0000387;gene_id=HG003_chrY_G0000149;Parent=HG003_chrY_T0000387;transcript_name=hg002_chrY_paternal_223.1;gene_name=FAM197Y4;ID=intron:HG003_chrY_T0000387:1;Name=FAM197Y4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9625553	9625698	.	-	.	source_transcript=hg002_chrY_paternal_223.1;source_transcript_name=hg002_chrY_paternal_223.1;source_gene=hg002_chrY_paternal_223;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_223;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_223.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_223.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y4;alternative_source_transcripts=hg002_chrY_paternal_223.1,hg002_chrY_paternal_223.1;transcript_id=HG003_chrY_T0000387;gene_id=HG003_chrY_G0000149;Parent=HG003_chrY_T0000387;transcript_name=hg002_chrY_paternal_223.1;gene_name=FAM197Y4;ID=exon:HG003_chrY_T0000387:2;Name=FAM197Y4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9625699	9625784	.	-	.	source_transcript=hg002_chrY_paternal_223.1;source_transcript_name=hg002_chrY_paternal_223.1;source_gene=hg002_chrY_paternal_223;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_223;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_223.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_223.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y4;alternative_source_transcripts=hg002_chrY_paternal_223.1,hg002_chrY_paternal_223.1;transcript_id=HG003_chrY_T0000387;gene_id=HG003_chrY_G0000149;Parent=HG003_chrY_T0000387;transcript_name=hg002_chrY_paternal_223.1;gene_name=FAM197Y4;ID=intron:HG003_chrY_T0000387:2;Name=FAM197Y4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9625785	9625886	.	-	.	source_transcript=hg002_chrY_paternal_223.1;source_transcript_name=hg002_chrY_paternal_223.1;source_gene=hg002_chrY_paternal_223;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_223;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_223.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_223.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y4;alternative_source_transcripts=hg002_chrY_paternal_223.1,hg002_chrY_paternal_223.1;transcript_id=HG003_chrY_T0000387;gene_id=HG003_chrY_G0000149;Parent=HG003_chrY_T0000387;transcript_name=hg002_chrY_paternal_223.1;gene_name=FAM197Y4;ID=exon:HG003_chrY_T0000387:3;Name=FAM197Y4;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9628499	9631313	.	+	.	source_gene_common_name=TSPY9;source_gene=hg002_chrY_paternal_224;alternative_source_transcripts=hg002_chrY_paternal_224.1,hg002_chrY_paternal_224.1;gene_id=HG003_chrY_G0000150;gene_biotype=protein_coding;gene_name=TSPY9;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000150;Name=TSPY9
HG003_chrY	CAT	transcript	9628499	9631313	100	+	.	source_transcript=hg002_chrY_paternal_224.1;source_transcript_name=hg002_chrY_paternal_224.2;source_gene=hg002_chrY_paternal_224;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_224;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_224.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_224.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_224.1,hg002_chrY_paternal_224.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000388;gene_id=HG003_chrY_G0000150;Parent=HG003_chrY_G0000150;transcript_name=hg002_chrY_paternal_224.2;gene_name=TSPY9;ID=HG003_chrY_T0000388;Name=TSPY9
HG003_chrY	CAT	exon	9628499	9629048	.	+	.	source_transcript=hg002_chrY_paternal_224.1;source_transcript_name=hg002_chrY_paternal_224.2;source_gene=hg002_chrY_paternal_224;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_224;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_224.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_224.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_224.1,hg002_chrY_paternal_224.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000388;gene_id=HG003_chrY_G0000150;Parent=HG003_chrY_T0000388;transcript_name=hg002_chrY_paternal_224.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000388:0;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9628545	9629048	.	+	0	source_transcript=hg002_chrY_paternal_224.1;source_transcript_name=hg002_chrY_paternal_224.2;source_gene=hg002_chrY_paternal_224;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_224;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_224.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_224.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_224.1,hg002_chrY_paternal_224.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000388;gene_id=HG003_chrY_G0000150;Parent=HG003_chrY_T0000388;transcript_name=hg002_chrY_paternal_224.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000388:0;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9628545	9628547	.	+	0	source_transcript=hg002_chrY_paternal_224.1;source_transcript_name=hg002_chrY_paternal_224.2;source_gene=hg002_chrY_paternal_224;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_224;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_224.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_224.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_224.1,hg002_chrY_paternal_224.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000388;gene_id=HG003_chrY_G0000150;Parent=HG003_chrY_T0000388;transcript_name=hg002_chrY_paternal_224.2;gene_name=TSPY9;ID=start_codon:HG003_chrY_T0000388;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9629049	9629655	.	+	.	source_transcript=hg002_chrY_paternal_224.1;source_transcript_name=hg002_chrY_paternal_224.2;source_gene=hg002_chrY_paternal_224;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_224;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_224.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_224.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_224.1,hg002_chrY_paternal_224.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000388;gene_id=HG003_chrY_G0000150;Parent=HG003_chrY_T0000388;transcript_name=hg002_chrY_paternal_224.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000388:0;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9629656	9629733	.	+	.	source_transcript=hg002_chrY_paternal_224.1;source_transcript_name=hg002_chrY_paternal_224.2;source_gene=hg002_chrY_paternal_224;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_224;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_224.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_224.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_224.1,hg002_chrY_paternal_224.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000388;gene_id=HG003_chrY_G0000150;Parent=HG003_chrY_T0000388;transcript_name=hg002_chrY_paternal_224.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000388:1;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9629656	9629733	.	+	0	source_transcript=hg002_chrY_paternal_224.1;source_transcript_name=hg002_chrY_paternal_224.2;source_gene=hg002_chrY_paternal_224;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_224;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_224.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_224.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_224.1,hg002_chrY_paternal_224.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000388;gene_id=HG003_chrY_G0000150;Parent=HG003_chrY_T0000388;transcript_name=hg002_chrY_paternal_224.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000388:1;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9629734	9629861	.	+	.	source_transcript=hg002_chrY_paternal_224.1;source_transcript_name=hg002_chrY_paternal_224.2;source_gene=hg002_chrY_paternal_224;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_224;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_224.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_224.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_224.1,hg002_chrY_paternal_224.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000388;gene_id=HG003_chrY_G0000150;Parent=HG003_chrY_T0000388;transcript_name=hg002_chrY_paternal_224.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000388:1;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9629862	9629973	.	+	.	source_transcript=hg002_chrY_paternal_224.1;source_transcript_name=hg002_chrY_paternal_224.2;source_gene=hg002_chrY_paternal_224;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_224;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_224.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_224.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_224.1,hg002_chrY_paternal_224.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000388;gene_id=HG003_chrY_G0000150;Parent=HG003_chrY_T0000388;transcript_name=hg002_chrY_paternal_224.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000388:2;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9629862	9629973	.	+	0	source_transcript=hg002_chrY_paternal_224.1;source_transcript_name=hg002_chrY_paternal_224.2;source_gene=hg002_chrY_paternal_224;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_224;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_224.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_224.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_224.1,hg002_chrY_paternal_224.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000388;gene_id=HG003_chrY_G0000150;Parent=HG003_chrY_T0000388;transcript_name=hg002_chrY_paternal_224.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000388:2;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9629974	9630074	.	+	.	source_transcript=hg002_chrY_paternal_224.1;source_transcript_name=hg002_chrY_paternal_224.2;source_gene=hg002_chrY_paternal_224;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_224;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_224.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_224.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_224.1,hg002_chrY_paternal_224.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000388;gene_id=HG003_chrY_G0000150;Parent=HG003_chrY_T0000388;transcript_name=hg002_chrY_paternal_224.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000388:2;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9630075	9630220	.	+	.	source_transcript=hg002_chrY_paternal_224.1;source_transcript_name=hg002_chrY_paternal_224.2;source_gene=hg002_chrY_paternal_224;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_224;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_224.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_224.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_224.1,hg002_chrY_paternal_224.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000388;gene_id=HG003_chrY_G0000150;Parent=HG003_chrY_T0000388;transcript_name=hg002_chrY_paternal_224.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000388:3;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9630075	9630220	.	+	2	source_transcript=hg002_chrY_paternal_224.1;source_transcript_name=hg002_chrY_paternal_224.2;source_gene=hg002_chrY_paternal_224;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_224;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_224.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_224.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_224.1,hg002_chrY_paternal_224.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000388;gene_id=HG003_chrY_G0000150;Parent=HG003_chrY_T0000388;transcript_name=hg002_chrY_paternal_224.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000388:3;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9630221	9630326	.	+	.	source_transcript=hg002_chrY_paternal_224.1;source_transcript_name=hg002_chrY_paternal_224.2;source_gene=hg002_chrY_paternal_224;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_224;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_224.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_224.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_224.1,hg002_chrY_paternal_224.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000388;gene_id=HG003_chrY_G0000150;Parent=HG003_chrY_T0000388;transcript_name=hg002_chrY_paternal_224.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000388:3;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9630327	9630408	.	+	.	source_transcript=hg002_chrY_paternal_224.1;source_transcript_name=hg002_chrY_paternal_224.2;source_gene=hg002_chrY_paternal_224;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_224;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_224.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_224.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_224.1,hg002_chrY_paternal_224.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000388;gene_id=HG003_chrY_G0000150;Parent=HG003_chrY_T0000388;transcript_name=hg002_chrY_paternal_224.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000388:4;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9630327	9630408	.	+	0	source_transcript=hg002_chrY_paternal_224.1;source_transcript_name=hg002_chrY_paternal_224.2;source_gene=hg002_chrY_paternal_224;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_224;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_224.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_224.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_224.1,hg002_chrY_paternal_224.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000388;gene_id=HG003_chrY_G0000150;Parent=HG003_chrY_T0000388;transcript_name=hg002_chrY_paternal_224.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000388:4;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9630409	9631102	.	+	.	source_transcript=hg002_chrY_paternal_224.1;source_transcript_name=hg002_chrY_paternal_224.2;source_gene=hg002_chrY_paternal_224;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_224;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_224.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_224.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_224.1,hg002_chrY_paternal_224.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000388;gene_id=HG003_chrY_G0000150;Parent=HG003_chrY_T0000388;transcript_name=hg002_chrY_paternal_224.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000388:4;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9631103	9631313	.	+	.	source_transcript=hg002_chrY_paternal_224.1;source_transcript_name=hg002_chrY_paternal_224.2;source_gene=hg002_chrY_paternal_224;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_224;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_224.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_224.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_224.1,hg002_chrY_paternal_224.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000388;gene_id=HG003_chrY_G0000150;Parent=HG003_chrY_T0000388;transcript_name=hg002_chrY_paternal_224.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000388:5;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9631103	9631125	.	+	2	source_transcript=hg002_chrY_paternal_224.1;source_transcript_name=hg002_chrY_paternal_224.2;source_gene=hg002_chrY_paternal_224;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_224;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_224.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_224.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_224.1,hg002_chrY_paternal_224.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000388;gene_id=HG003_chrY_G0000150;Parent=HG003_chrY_T0000388;transcript_name=hg002_chrY_paternal_224.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000388:5;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9631123	9631125	.	+	0	source_transcript=hg002_chrY_paternal_224.1;source_transcript_name=hg002_chrY_paternal_224.2;source_gene=hg002_chrY_paternal_224;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_224;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_224.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_224.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_224.1,hg002_chrY_paternal_224.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000388;gene_id=HG003_chrY_G0000150;Parent=HG003_chrY_T0000388;transcript_name=hg002_chrY_paternal_224.2;gene_name=TSPY9;ID=stop_codon:HG003_chrY_T0000388;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9628499	9631313	100	+	.	source_transcript=hg002_chrY_paternal_224.2;source_transcript_name=hg002_chrY_paternal_224.2;source_gene=hg002_chrY_paternal_224;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_224;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_224.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_224.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_224.2,hg002_chrY_paternal_224.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000389;gene_id=HG003_chrY_G0000150;Parent=HG003_chrY_G0000150;transcript_name=hg002_chrY_paternal_224.2;gene_name=TSPY9;ID=HG003_chrY_T0000389;Name=TSPY9
HG003_chrY	CAT	exon	9628499	9629048	.	+	.	source_transcript=hg002_chrY_paternal_224.2;source_transcript_name=hg002_chrY_paternal_224.2;source_gene=hg002_chrY_paternal_224;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_224;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_224.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_224.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_224.2,hg002_chrY_paternal_224.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000389;gene_id=HG003_chrY_G0000150;Parent=HG003_chrY_T0000389;transcript_name=hg002_chrY_paternal_224.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000389:0;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9628545	9629048	.	+	0	source_transcript=hg002_chrY_paternal_224.2;source_transcript_name=hg002_chrY_paternal_224.2;source_gene=hg002_chrY_paternal_224;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_224;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_224.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_224.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_224.2,hg002_chrY_paternal_224.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000389;gene_id=HG003_chrY_G0000150;Parent=HG003_chrY_T0000389;transcript_name=hg002_chrY_paternal_224.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000389:0;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9628545	9628547	.	+	0	source_transcript=hg002_chrY_paternal_224.2;source_transcript_name=hg002_chrY_paternal_224.2;source_gene=hg002_chrY_paternal_224;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_224;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_224.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_224.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_224.2,hg002_chrY_paternal_224.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000389;gene_id=HG003_chrY_G0000150;Parent=HG003_chrY_T0000389;transcript_name=hg002_chrY_paternal_224.2;gene_name=TSPY9;ID=start_codon:HG003_chrY_T0000389;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9629049	9629655	.	+	.	source_transcript=hg002_chrY_paternal_224.2;source_transcript_name=hg002_chrY_paternal_224.2;source_gene=hg002_chrY_paternal_224;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_224;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_224.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_224.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_224.2,hg002_chrY_paternal_224.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000389;gene_id=HG003_chrY_G0000150;Parent=HG003_chrY_T0000389;transcript_name=hg002_chrY_paternal_224.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000389:0;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9629656	9629733	.	+	.	source_transcript=hg002_chrY_paternal_224.2;source_transcript_name=hg002_chrY_paternal_224.2;source_gene=hg002_chrY_paternal_224;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_224;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_224.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_224.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_224.2,hg002_chrY_paternal_224.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000389;gene_id=HG003_chrY_G0000150;Parent=HG003_chrY_T0000389;transcript_name=hg002_chrY_paternal_224.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000389:1;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9629656	9629733	.	+	0	source_transcript=hg002_chrY_paternal_224.2;source_transcript_name=hg002_chrY_paternal_224.2;source_gene=hg002_chrY_paternal_224;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_224;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_224.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_224.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_224.2,hg002_chrY_paternal_224.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000389;gene_id=HG003_chrY_G0000150;Parent=HG003_chrY_T0000389;transcript_name=hg002_chrY_paternal_224.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000389:1;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9629734	9629861	.	+	.	source_transcript=hg002_chrY_paternal_224.2;source_transcript_name=hg002_chrY_paternal_224.2;source_gene=hg002_chrY_paternal_224;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_224;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_224.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_224.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_224.2,hg002_chrY_paternal_224.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000389;gene_id=HG003_chrY_G0000150;Parent=HG003_chrY_T0000389;transcript_name=hg002_chrY_paternal_224.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000389:1;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9629862	9629973	.	+	.	source_transcript=hg002_chrY_paternal_224.2;source_transcript_name=hg002_chrY_paternal_224.2;source_gene=hg002_chrY_paternal_224;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_224;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_224.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_224.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_224.2,hg002_chrY_paternal_224.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000389;gene_id=HG003_chrY_G0000150;Parent=HG003_chrY_T0000389;transcript_name=hg002_chrY_paternal_224.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000389:2;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9629862	9629973	.	+	0	source_transcript=hg002_chrY_paternal_224.2;source_transcript_name=hg002_chrY_paternal_224.2;source_gene=hg002_chrY_paternal_224;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_224;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_224.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_224.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_224.2,hg002_chrY_paternal_224.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000389;gene_id=HG003_chrY_G0000150;Parent=HG003_chrY_T0000389;transcript_name=hg002_chrY_paternal_224.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000389:2;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9629974	9630074	.	+	.	source_transcript=hg002_chrY_paternal_224.2;source_transcript_name=hg002_chrY_paternal_224.2;source_gene=hg002_chrY_paternal_224;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_224;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_224.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_224.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_224.2,hg002_chrY_paternal_224.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000389;gene_id=HG003_chrY_G0000150;Parent=HG003_chrY_T0000389;transcript_name=hg002_chrY_paternal_224.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000389:2;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9630075	9630220	.	+	.	source_transcript=hg002_chrY_paternal_224.2;source_transcript_name=hg002_chrY_paternal_224.2;source_gene=hg002_chrY_paternal_224;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_224;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_224.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_224.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_224.2,hg002_chrY_paternal_224.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000389;gene_id=HG003_chrY_G0000150;Parent=HG003_chrY_T0000389;transcript_name=hg002_chrY_paternal_224.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000389:3;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9630075	9630220	.	+	2	source_transcript=hg002_chrY_paternal_224.2;source_transcript_name=hg002_chrY_paternal_224.2;source_gene=hg002_chrY_paternal_224;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_224;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_224.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_224.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_224.2,hg002_chrY_paternal_224.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000389;gene_id=HG003_chrY_G0000150;Parent=HG003_chrY_T0000389;transcript_name=hg002_chrY_paternal_224.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000389:3;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9630221	9630315	.	+	.	source_transcript=hg002_chrY_paternal_224.2;source_transcript_name=hg002_chrY_paternal_224.2;source_gene=hg002_chrY_paternal_224;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_224;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_224.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_224.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_224.2,hg002_chrY_paternal_224.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000389;gene_id=HG003_chrY_G0000150;Parent=HG003_chrY_T0000389;transcript_name=hg002_chrY_paternal_224.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000389:3;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9630316	9630408	.	+	.	source_transcript=hg002_chrY_paternal_224.2;source_transcript_name=hg002_chrY_paternal_224.2;source_gene=hg002_chrY_paternal_224;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_224;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_224.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_224.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_224.2,hg002_chrY_paternal_224.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000389;gene_id=HG003_chrY_G0000150;Parent=HG003_chrY_T0000389;transcript_name=hg002_chrY_paternal_224.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000389:4;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9630316	9630378	.	+	0	source_transcript=hg002_chrY_paternal_224.2;source_transcript_name=hg002_chrY_paternal_224.2;source_gene=hg002_chrY_paternal_224;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_224;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_224.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_224.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_224.2,hg002_chrY_paternal_224.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000389;gene_id=HG003_chrY_G0000150;Parent=HG003_chrY_T0000389;transcript_name=hg002_chrY_paternal_224.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000389:4;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9630376	9630378	.	+	0	source_transcript=hg002_chrY_paternal_224.2;source_transcript_name=hg002_chrY_paternal_224.2;source_gene=hg002_chrY_paternal_224;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_224;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_224.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_224.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_224.2,hg002_chrY_paternal_224.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000389;gene_id=HG003_chrY_G0000150;Parent=HG003_chrY_T0000389;transcript_name=hg002_chrY_paternal_224.2;gene_name=TSPY9;ID=stop_codon:HG003_chrY_T0000389;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9630409	9631102	.	+	.	source_transcript=hg002_chrY_paternal_224.2;source_transcript_name=hg002_chrY_paternal_224.2;source_gene=hg002_chrY_paternal_224;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_224;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_224.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_224.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_224.2,hg002_chrY_paternal_224.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000389;gene_id=HG003_chrY_G0000150;Parent=HG003_chrY_T0000389;transcript_name=hg002_chrY_paternal_224.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000389:4;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9631103	9631313	.	+	.	source_transcript=hg002_chrY_paternal_224.2;source_transcript_name=hg002_chrY_paternal_224.2;source_gene=hg002_chrY_paternal_224;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_224;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_224.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_224.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_224.2,hg002_chrY_paternal_224.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000389;gene_id=HG003_chrY_G0000150;Parent=HG003_chrY_T0000389;transcript_name=hg002_chrY_paternal_224.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000389:5;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9640583	9646188	.	-	.	source_gene_common_name=FAM197Y3;source_gene=hg002_chrY_paternal_225;alternative_source_transcripts=hg002_chrY_paternal_225.1,hg002_chrY_paternal_225.1;gene_id=HG003_chrY_G0000151;gene_biotype=lncRNA;gene_name=FAM197Y3;gene_sources=liftoff;ID=HG003_chrY_G0000151;Name=FAM197Y3
HG003_chrY	CAT	transcript	9640583	9646188	1000	-	.	source_transcript=hg002_chrY_paternal_225.1;source_transcript_name=hg002_chrY_paternal_225.1;source_gene=hg002_chrY_paternal_225;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_225;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_225.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_225.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_225.1,hg002_chrY_paternal_225.1;transcript_id=HG003_chrY_T0000390;gene_id=HG003_chrY_G0000151;Parent=HG003_chrY_G0000151;transcript_name=hg002_chrY_paternal_225.1;gene_name=FAM197Y3;ID=HG003_chrY_T0000390;Name=FAM197Y3
HG003_chrY	CAT	exon	9640583	9640642	.	-	.	source_transcript=hg002_chrY_paternal_225.1;source_transcript_name=hg002_chrY_paternal_225.1;source_gene=hg002_chrY_paternal_225;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_225;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_225.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_225.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_225.1,hg002_chrY_paternal_225.1;transcript_id=HG003_chrY_T0000390;gene_id=HG003_chrY_G0000151;Parent=HG003_chrY_T0000390;transcript_name=hg002_chrY_paternal_225.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000390:0;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9640643	9644193	.	-	.	source_transcript=hg002_chrY_paternal_225.1;source_transcript_name=hg002_chrY_paternal_225.1;source_gene=hg002_chrY_paternal_225;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_225;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_225.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_225.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_225.1,hg002_chrY_paternal_225.1;transcript_id=HG003_chrY_T0000390;gene_id=HG003_chrY_G0000151;Parent=HG003_chrY_T0000390;transcript_name=hg002_chrY_paternal_225.1;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000390:0;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9644194	9644352	.	-	.	source_transcript=hg002_chrY_paternal_225.1;source_transcript_name=hg002_chrY_paternal_225.1;source_gene=hg002_chrY_paternal_225;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_225;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_225.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_225.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_225.1,hg002_chrY_paternal_225.1;transcript_id=HG003_chrY_T0000390;gene_id=HG003_chrY_G0000151;Parent=HG003_chrY_T0000390;transcript_name=hg002_chrY_paternal_225.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000390:1;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9644353	9645854	.	-	.	source_transcript=hg002_chrY_paternal_225.1;source_transcript_name=hg002_chrY_paternal_225.1;source_gene=hg002_chrY_paternal_225;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_225;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_225.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_225.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_225.1,hg002_chrY_paternal_225.1;transcript_id=HG003_chrY_T0000390;gene_id=HG003_chrY_G0000151;Parent=HG003_chrY_T0000390;transcript_name=hg002_chrY_paternal_225.1;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000390:1;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9645855	9646000	.	-	.	source_transcript=hg002_chrY_paternal_225.1;source_transcript_name=hg002_chrY_paternal_225.1;source_gene=hg002_chrY_paternal_225;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_225;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_225.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_225.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_225.1,hg002_chrY_paternal_225.1;transcript_id=HG003_chrY_T0000390;gene_id=HG003_chrY_G0000151;Parent=HG003_chrY_T0000390;transcript_name=hg002_chrY_paternal_225.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000390:2;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9646001	9646086	.	-	.	source_transcript=hg002_chrY_paternal_225.1;source_transcript_name=hg002_chrY_paternal_225.1;source_gene=hg002_chrY_paternal_225;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_225;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_225.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_225.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_225.1,hg002_chrY_paternal_225.1;transcript_id=HG003_chrY_T0000390;gene_id=HG003_chrY_G0000151;Parent=HG003_chrY_T0000390;transcript_name=hg002_chrY_paternal_225.1;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000390:2;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9646087	9646188	.	-	.	source_transcript=hg002_chrY_paternal_225.1;source_transcript_name=hg002_chrY_paternal_225.1;source_gene=hg002_chrY_paternal_225;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_225;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_225.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_225.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_225.1,hg002_chrY_paternal_225.1;transcript_id=HG003_chrY_T0000390;gene_id=HG003_chrY_G0000151;Parent=HG003_chrY_T0000390;transcript_name=hg002_chrY_paternal_225.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000390:3;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9648797	9651593	.	+	.	source_gene_common_name=TSPY10;source_gene=hg002_chrY_paternal_226;alternative_source_transcripts=hg002_chrY_paternal_226.1,hg002_chrY_paternal_226.1;gene_id=HG003_chrY_G0000152;gene_biotype=protein_coding;gene_name=TSPY10;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000152;Name=TSPY10
HG003_chrY	CAT	transcript	9648797	9651593	100	+	.	source_transcript=hg002_chrY_paternal_226.1;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.1,hg002_chrY_paternal_226.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000391;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_G0000152;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=HG003_chrY_T0000391;Name=TSPY10
HG003_chrY	CAT	exon	9648797	9649328	.	+	.	source_transcript=hg002_chrY_paternal_226.1;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.1,hg002_chrY_paternal_226.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000391;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000391;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000391:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9648843	9649328	.	+	0	source_transcript=hg002_chrY_paternal_226.1;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.1,hg002_chrY_paternal_226.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000391;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000391;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000391:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9648843	9648845	.	+	0	source_transcript=hg002_chrY_paternal_226.1;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.1,hg002_chrY_paternal_226.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000391;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000391;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000391;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9649329	9649935	.	+	.	source_transcript=hg002_chrY_paternal_226.1;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.1,hg002_chrY_paternal_226.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000391;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000391;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000391:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9649936	9650013	.	+	.	source_transcript=hg002_chrY_paternal_226.1;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.1,hg002_chrY_paternal_226.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000391;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000391;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000391:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9649936	9650013	.	+	0	source_transcript=hg002_chrY_paternal_226.1;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.1,hg002_chrY_paternal_226.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000391;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000391;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000391:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650014	9650141	.	+	.	source_transcript=hg002_chrY_paternal_226.1;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.1,hg002_chrY_paternal_226.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000391;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000391;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000391:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9650142	9650253	.	+	.	source_transcript=hg002_chrY_paternal_226.1;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.1,hg002_chrY_paternal_226.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000391;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000391;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000391:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9650142	9650253	.	+	0	source_transcript=hg002_chrY_paternal_226.1;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.1,hg002_chrY_paternal_226.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000391;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000391;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000391:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650254	9650354	.	+	.	source_transcript=hg002_chrY_paternal_226.1;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.1,hg002_chrY_paternal_226.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000391;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000391;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000391:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9650355	9650500	.	+	.	source_transcript=hg002_chrY_paternal_226.1;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.1,hg002_chrY_paternal_226.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000391;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000391;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000391:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9650355	9650500	.	+	2	source_transcript=hg002_chrY_paternal_226.1;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.1,hg002_chrY_paternal_226.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000391;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000391;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000391:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650501	9650606	.	+	.	source_transcript=hg002_chrY_paternal_226.1;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.1,hg002_chrY_paternal_226.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000391;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000391;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000391:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9650607	9650688	.	+	.	source_transcript=hg002_chrY_paternal_226.1;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.1,hg002_chrY_paternal_226.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000391;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000391;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000391:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9650607	9650688	.	+	0	source_transcript=hg002_chrY_paternal_226.1;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.1,hg002_chrY_paternal_226.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000391;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000391;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000391:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650689	9651382	.	+	.	source_transcript=hg002_chrY_paternal_226.1;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.1,hg002_chrY_paternal_226.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000391;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000391;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000391:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9651383	9651593	.	+	.	source_transcript=hg002_chrY_paternal_226.1;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.1,hg002_chrY_paternal_226.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000391;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000391;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000391:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9651383	9651405	.	+	2	source_transcript=hg002_chrY_paternal_226.1;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.1,hg002_chrY_paternal_226.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000391;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000391;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000391:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9651403	9651405	.	+	0	source_transcript=hg002_chrY_paternal_226.1;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.1,hg002_chrY_paternal_226.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000391;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000391;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000391;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9648797	9651593	100	+	.	source_transcript=hg002_chrY_paternal_226.2;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.2,hg002_chrY_paternal_226.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000392;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_G0000152;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=HG003_chrY_T0000392;Name=TSPY10
HG003_chrY	CAT	exon	9648797	9649328	.	+	.	source_transcript=hg002_chrY_paternal_226.2;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.2,hg002_chrY_paternal_226.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000392;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000392;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000392:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9648843	9649328	.	+	0	source_transcript=hg002_chrY_paternal_226.2;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.2,hg002_chrY_paternal_226.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000392;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000392;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000392:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9648843	9648845	.	+	0	source_transcript=hg002_chrY_paternal_226.2;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.2,hg002_chrY_paternal_226.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000392;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000392;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000392;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9649329	9649935	.	+	.	source_transcript=hg002_chrY_paternal_226.2;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.2,hg002_chrY_paternal_226.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000392;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000392;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000392:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9649936	9650013	.	+	.	source_transcript=hg002_chrY_paternal_226.2;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.2,hg002_chrY_paternal_226.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000392;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000392;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000392:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9649936	9650013	.	+	0	source_transcript=hg002_chrY_paternal_226.2;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.2,hg002_chrY_paternal_226.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000392;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000392;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000392:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650014	9650141	.	+	.	source_transcript=hg002_chrY_paternal_226.2;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.2,hg002_chrY_paternal_226.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000392;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000392;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000392:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9650142	9650253	.	+	.	source_transcript=hg002_chrY_paternal_226.2;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.2,hg002_chrY_paternal_226.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000392;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000392;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000392:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9650142	9650253	.	+	0	source_transcript=hg002_chrY_paternal_226.2;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.2,hg002_chrY_paternal_226.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000392;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000392;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000392:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650254	9650354	.	+	.	source_transcript=hg002_chrY_paternal_226.2;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.2,hg002_chrY_paternal_226.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000392;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000392;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000392:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9650355	9650500	.	+	.	source_transcript=hg002_chrY_paternal_226.2;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.2,hg002_chrY_paternal_226.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000392;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000392;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000392:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9650355	9650500	.	+	2	source_transcript=hg002_chrY_paternal_226.2;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.2,hg002_chrY_paternal_226.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000392;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000392;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000392:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650501	9650595	.	+	.	source_transcript=hg002_chrY_paternal_226.2;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.2,hg002_chrY_paternal_226.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000392;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000392;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000392:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9650596	9650688	.	+	.	source_transcript=hg002_chrY_paternal_226.2;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.2,hg002_chrY_paternal_226.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000392;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000392;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000392:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9650596	9650658	.	+	0	source_transcript=hg002_chrY_paternal_226.2;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.2,hg002_chrY_paternal_226.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000392;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000392;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000392:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9650656	9650658	.	+	0	source_transcript=hg002_chrY_paternal_226.2;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.2,hg002_chrY_paternal_226.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000392;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000392;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000392;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650689	9651382	.	+	.	source_transcript=hg002_chrY_paternal_226.2;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.2,hg002_chrY_paternal_226.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000392;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000392;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000392:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9651383	9651593	.	+	.	source_transcript=hg002_chrY_paternal_226.2;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.2,hg002_chrY_paternal_226.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000392;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000392;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000392:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9648797	9651593	100	+	.	source_transcript=hg002_chrY_paternal_226.3;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.3,hg002_chrY_paternal_226.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000393;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_G0000152;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=HG003_chrY_T0000393;Name=TSPY10
HG003_chrY	CAT	exon	9648797	9649328	.	+	.	source_transcript=hg002_chrY_paternal_226.3;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.3,hg002_chrY_paternal_226.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000393;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000393;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000393:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9648843	9649328	.	+	0	source_transcript=hg002_chrY_paternal_226.3;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.3,hg002_chrY_paternal_226.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000393;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000393;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000393:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9648843	9648845	.	+	0	source_transcript=hg002_chrY_paternal_226.3;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.3,hg002_chrY_paternal_226.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000393;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000393;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000393;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9649329	9649935	.	+	.	source_transcript=hg002_chrY_paternal_226.3;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.3,hg002_chrY_paternal_226.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000393;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000393;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000393:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9649936	9650013	.	+	.	source_transcript=hg002_chrY_paternal_226.3;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.3,hg002_chrY_paternal_226.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000393;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000393;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000393:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9649936	9650013	.	+	0	source_transcript=hg002_chrY_paternal_226.3;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.3,hg002_chrY_paternal_226.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000393;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000393;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000393:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650014	9650141	.	+	.	source_transcript=hg002_chrY_paternal_226.3;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.3,hg002_chrY_paternal_226.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000393;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000393;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000393:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9650142	9650253	.	+	.	source_transcript=hg002_chrY_paternal_226.3;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.3,hg002_chrY_paternal_226.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000393;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000393;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000393:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9650142	9650253	.	+	0	source_transcript=hg002_chrY_paternal_226.3;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.3,hg002_chrY_paternal_226.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000393;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000393;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000393:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650254	9650361	.	+	.	source_transcript=hg002_chrY_paternal_226.3;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.3,hg002_chrY_paternal_226.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000393;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000393;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000393:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9650362	9650500	.	+	.	source_transcript=hg002_chrY_paternal_226.3;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.3,hg002_chrY_paternal_226.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000393;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000393;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000393:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9650362	9650500	.	+	2	source_transcript=hg002_chrY_paternal_226.3;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.3,hg002_chrY_paternal_226.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000393;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000393;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000393:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650501	9650606	.	+	.	source_transcript=hg002_chrY_paternal_226.3;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.3,hg002_chrY_paternal_226.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000393;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000393;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000393:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9650607	9650688	.	+	.	source_transcript=hg002_chrY_paternal_226.3;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.3,hg002_chrY_paternal_226.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000393;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000393;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000393:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9650607	9650658	.	+	1	source_transcript=hg002_chrY_paternal_226.3;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.3,hg002_chrY_paternal_226.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000393;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000393;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000393:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9650656	9650658	.	+	0	source_transcript=hg002_chrY_paternal_226.3;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.3,hg002_chrY_paternal_226.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000393;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000393;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000393;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650689	9651382	.	+	.	source_transcript=hg002_chrY_paternal_226.3;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.3,hg002_chrY_paternal_226.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000393;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000393;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000393:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9651383	9651593	.	+	.	source_transcript=hg002_chrY_paternal_226.3;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.3,hg002_chrY_paternal_226.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000393;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000393;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000393:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9648797	9651593	1000	+	.	source_transcript=hg002_chrY_paternal_226.4;source_transcript_name=hg002_chrY_paternal_226.1;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_226.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.4,hg002_chrY_paternal_226.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000394;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_G0000152;transcript_name=hg002_chrY_paternal_226.1;gene_name=TSPY10;ID=HG003_chrY_T0000394;Name=TSPY10
HG003_chrY	CAT	exon	9648797	9649328	.	+	.	source_transcript=hg002_chrY_paternal_226.4;source_transcript_name=hg002_chrY_paternal_226.1;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_226.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.4,hg002_chrY_paternal_226.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000394;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000394;transcript_name=hg002_chrY_paternal_226.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000394:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9649329	9649935	.	+	.	source_transcript=hg002_chrY_paternal_226.4;source_transcript_name=hg002_chrY_paternal_226.1;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_226.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.4,hg002_chrY_paternal_226.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000394;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000394;transcript_name=hg002_chrY_paternal_226.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000394:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9649936	9650013	.	+	.	source_transcript=hg002_chrY_paternal_226.4;source_transcript_name=hg002_chrY_paternal_226.1;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_226.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.4,hg002_chrY_paternal_226.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000394;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000394;transcript_name=hg002_chrY_paternal_226.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000394:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650014	9650141	.	+	.	source_transcript=hg002_chrY_paternal_226.4;source_transcript_name=hg002_chrY_paternal_226.1;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_226.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.4,hg002_chrY_paternal_226.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000394;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000394;transcript_name=hg002_chrY_paternal_226.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000394:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9650142	9650253	.	+	.	source_transcript=hg002_chrY_paternal_226.4;source_transcript_name=hg002_chrY_paternal_226.1;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_226.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.4,hg002_chrY_paternal_226.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000394;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000394;transcript_name=hg002_chrY_paternal_226.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000394:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650254	9650361	.	+	.	source_transcript=hg002_chrY_paternal_226.4;source_transcript_name=hg002_chrY_paternal_226.1;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_226.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.4,hg002_chrY_paternal_226.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000394;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000394;transcript_name=hg002_chrY_paternal_226.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000394:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9650362	9650500	.	+	.	source_transcript=hg002_chrY_paternal_226.4;source_transcript_name=hg002_chrY_paternal_226.1;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_226.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.4,hg002_chrY_paternal_226.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000394;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000394;transcript_name=hg002_chrY_paternal_226.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000394:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650501	9650595	.	+	.	source_transcript=hg002_chrY_paternal_226.4;source_transcript_name=hg002_chrY_paternal_226.1;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_226.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.4,hg002_chrY_paternal_226.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000394;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000394;transcript_name=hg002_chrY_paternal_226.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000394:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9650596	9650688	.	+	.	source_transcript=hg002_chrY_paternal_226.4;source_transcript_name=hg002_chrY_paternal_226.1;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_226.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.4,hg002_chrY_paternal_226.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000394;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000394;transcript_name=hg002_chrY_paternal_226.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000394:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650689	9651382	.	+	.	source_transcript=hg002_chrY_paternal_226.4;source_transcript_name=hg002_chrY_paternal_226.1;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_226.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.4,hg002_chrY_paternal_226.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000394;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000394;transcript_name=hg002_chrY_paternal_226.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000394:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9651383	9651593	.	+	.	source_transcript=hg002_chrY_paternal_226.4;source_transcript_name=hg002_chrY_paternal_226.1;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_226.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_226.4,hg002_chrY_paternal_226.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000394;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000394;transcript_name=hg002_chrY_paternal_226.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000394:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9660867	9666560	.	-	.	source_gene_common_name=FAM197Y2;source_gene=hg002_chrY_paternal_227;alternative_source_transcripts=hg002_chrY_paternal_227.1,hg002_chrY_paternal_227.1;gene_id=HG003_chrY_G0000153;gene_biotype=lncRNA;gene_name=FAM197Y2;gene_sources=liftoff;ID=HG003_chrY_G0000153;Name=FAM197Y2
HG003_chrY	CAT	transcript	9660867	9666560	1000	-	.	source_transcript=hg002_chrY_paternal_227.1;source_transcript_name=hg002_chrY_paternal_227.1;source_gene=hg002_chrY_paternal_227;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_227;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_227.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_227.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_227.1,hg002_chrY_paternal_227.1;transcript_id=HG003_chrY_T0000395;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_G0000153;transcript_name=hg002_chrY_paternal_227.1;gene_name=FAM197Y2;ID=HG003_chrY_T0000395;Name=FAM197Y2
HG003_chrY	CAT	exon	9660867	9660926	.	-	.	source_transcript=hg002_chrY_paternal_227.1;source_transcript_name=hg002_chrY_paternal_227.1;source_gene=hg002_chrY_paternal_227;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_227;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_227.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_227.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_227.1,hg002_chrY_paternal_227.1;transcript_id=HG003_chrY_T0000395;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000395;transcript_name=hg002_chrY_paternal_227.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000395:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9660927	9664476	.	-	.	source_transcript=hg002_chrY_paternal_227.1;source_transcript_name=hg002_chrY_paternal_227.1;source_gene=hg002_chrY_paternal_227;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_227;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_227.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_227.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_227.1,hg002_chrY_paternal_227.1;transcript_id=HG003_chrY_T0000395;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000395;transcript_name=hg002_chrY_paternal_227.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000395:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9664477	9664635	.	-	.	source_transcript=hg002_chrY_paternal_227.1;source_transcript_name=hg002_chrY_paternal_227.1;source_gene=hg002_chrY_paternal_227;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_227;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_227.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_227.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_227.1,hg002_chrY_paternal_227.1;transcript_id=HG003_chrY_T0000395;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000395;transcript_name=hg002_chrY_paternal_227.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000395:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9664636	9666137	.	-	.	source_transcript=hg002_chrY_paternal_227.1;source_transcript_name=hg002_chrY_paternal_227.1;source_gene=hg002_chrY_paternal_227;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_227;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_227.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_227.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_227.1,hg002_chrY_paternal_227.1;transcript_id=HG003_chrY_T0000395;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000395;transcript_name=hg002_chrY_paternal_227.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000395:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9666138	9666283	.	-	.	source_transcript=hg002_chrY_paternal_227.1;source_transcript_name=hg002_chrY_paternal_227.1;source_gene=hg002_chrY_paternal_227;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_227;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_227.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_227.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_227.1,hg002_chrY_paternal_227.1;transcript_id=HG003_chrY_T0000395;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000395;transcript_name=hg002_chrY_paternal_227.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000395:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9666284	9666369	.	-	.	source_transcript=hg002_chrY_paternal_227.1;source_transcript_name=hg002_chrY_paternal_227.1;source_gene=hg002_chrY_paternal_227;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_227;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_227.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_227.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_227.1,hg002_chrY_paternal_227.1;transcript_id=HG003_chrY_T0000395;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000395;transcript_name=hg002_chrY_paternal_227.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000395:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9666370	9666560	.	-	.	source_transcript=hg002_chrY_paternal_227.1;source_transcript_name=hg002_chrY_paternal_227.1;source_gene=hg002_chrY_paternal_227;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_227;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_227.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_227.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_227.1,hg002_chrY_paternal_227.1;transcript_id=HG003_chrY_T0000395;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000395;transcript_name=hg002_chrY_paternal_227.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000395:3;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9669084	9671881	.	+	.	source_gene_common_name=TSPY10;source_gene=hg002_chrY_paternal_228;alternative_source_transcripts=hg002_chrY_paternal_228.1,hg002_chrY_paternal_228.1;gene_id=HG003_chrY_G0000154;gene_biotype=protein_coding;gene_name=TSPY10;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000154;Name=TSPY10
HG003_chrY	CAT	transcript	9669084	9671881	100	+	.	source_transcript=hg002_chrY_paternal_228.1;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.1,hg002_chrY_paternal_228.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000396;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_G0000154;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=HG003_chrY_T0000396;Name=TSPY10
HG003_chrY	CAT	exon	9669084	9669615	.	+	.	source_transcript=hg002_chrY_paternal_228.1;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.1,hg002_chrY_paternal_228.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000396;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000396;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000396:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9669130	9669615	.	+	0	source_transcript=hg002_chrY_paternal_228.1;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.1,hg002_chrY_paternal_228.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000396;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000396;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000396:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9669130	9669132	.	+	0	source_transcript=hg002_chrY_paternal_228.1;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.1,hg002_chrY_paternal_228.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000396;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000396;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000396;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9669616	9670222	.	+	.	source_transcript=hg002_chrY_paternal_228.1;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.1,hg002_chrY_paternal_228.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000396;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000396;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000396:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9670223	9670300	.	+	.	source_transcript=hg002_chrY_paternal_228.1;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.1,hg002_chrY_paternal_228.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000396;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000396;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000396:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9670223	9670300	.	+	0	source_transcript=hg002_chrY_paternal_228.1;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.1,hg002_chrY_paternal_228.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000396;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000396;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000396:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670301	9670428	.	+	.	source_transcript=hg002_chrY_paternal_228.1;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.1,hg002_chrY_paternal_228.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000396;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000396;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000396:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9670429	9670540	.	+	.	source_transcript=hg002_chrY_paternal_228.1;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.1,hg002_chrY_paternal_228.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000396;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000396;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000396:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9670429	9670540	.	+	0	source_transcript=hg002_chrY_paternal_228.1;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.1,hg002_chrY_paternal_228.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000396;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000396;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000396:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670541	9670641	.	+	.	source_transcript=hg002_chrY_paternal_228.1;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.1,hg002_chrY_paternal_228.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000396;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000396;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000396:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9670642	9670787	.	+	.	source_transcript=hg002_chrY_paternal_228.1;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.1,hg002_chrY_paternal_228.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000396;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000396;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000396:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9670642	9670787	.	+	2	source_transcript=hg002_chrY_paternal_228.1;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.1,hg002_chrY_paternal_228.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000396;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000396;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000396:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670788	9670893	.	+	.	source_transcript=hg002_chrY_paternal_228.1;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.1,hg002_chrY_paternal_228.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000396;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000396;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000396:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9670894	9670975	.	+	.	source_transcript=hg002_chrY_paternal_228.1;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.1,hg002_chrY_paternal_228.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000396;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000396;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000396:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9670894	9670975	.	+	0	source_transcript=hg002_chrY_paternal_228.1;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.1,hg002_chrY_paternal_228.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000396;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000396;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000396:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670976	9671669	.	+	.	source_transcript=hg002_chrY_paternal_228.1;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.1,hg002_chrY_paternal_228.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000396;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000396;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000396:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9671670	9671881	.	+	.	source_transcript=hg002_chrY_paternal_228.1;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.1,hg002_chrY_paternal_228.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000396;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000396;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000396:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9671670	9671692	.	+	2	source_transcript=hg002_chrY_paternal_228.1;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.1,hg002_chrY_paternal_228.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000396;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000396;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000396:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9671690	9671692	.	+	0	source_transcript=hg002_chrY_paternal_228.1;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.1,hg002_chrY_paternal_228.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000396;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000396;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000396;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9669084	9671881	100	+	.	source_transcript=hg002_chrY_paternal_228.2;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.2,hg002_chrY_paternal_228.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000397;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_G0000154;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=HG003_chrY_T0000397;Name=TSPY10
HG003_chrY	CAT	exon	9669084	9669615	.	+	.	source_transcript=hg002_chrY_paternal_228.2;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.2,hg002_chrY_paternal_228.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000397;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000397;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000397:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9669130	9669615	.	+	0	source_transcript=hg002_chrY_paternal_228.2;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.2,hg002_chrY_paternal_228.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000397;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000397;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000397:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9669130	9669132	.	+	0	source_transcript=hg002_chrY_paternal_228.2;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.2,hg002_chrY_paternal_228.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000397;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000397;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000397;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9669616	9670222	.	+	.	source_transcript=hg002_chrY_paternal_228.2;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.2,hg002_chrY_paternal_228.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000397;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000397;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000397:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9670223	9670300	.	+	.	source_transcript=hg002_chrY_paternal_228.2;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.2,hg002_chrY_paternal_228.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000397;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000397;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000397:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9670223	9670300	.	+	0	source_transcript=hg002_chrY_paternal_228.2;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.2,hg002_chrY_paternal_228.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000397;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000397;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000397:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670301	9670428	.	+	.	source_transcript=hg002_chrY_paternal_228.2;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.2,hg002_chrY_paternal_228.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000397;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000397;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000397:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9670429	9670540	.	+	.	source_transcript=hg002_chrY_paternal_228.2;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.2,hg002_chrY_paternal_228.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000397;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000397;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000397:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9670429	9670540	.	+	0	source_transcript=hg002_chrY_paternal_228.2;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.2,hg002_chrY_paternal_228.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000397;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000397;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000397:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670541	9670641	.	+	.	source_transcript=hg002_chrY_paternal_228.2;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.2,hg002_chrY_paternal_228.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000397;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000397;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000397:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9670642	9670787	.	+	.	source_transcript=hg002_chrY_paternal_228.2;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.2,hg002_chrY_paternal_228.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000397;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000397;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000397:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9670642	9670787	.	+	2	source_transcript=hg002_chrY_paternal_228.2;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.2,hg002_chrY_paternal_228.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000397;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000397;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000397:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670788	9670882	.	+	.	source_transcript=hg002_chrY_paternal_228.2;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.2,hg002_chrY_paternal_228.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000397;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000397;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000397:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9670883	9670975	.	+	.	source_transcript=hg002_chrY_paternal_228.2;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.2,hg002_chrY_paternal_228.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000397;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000397;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000397:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9670883	9670945	.	+	0	source_transcript=hg002_chrY_paternal_228.2;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.2,hg002_chrY_paternal_228.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000397;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000397;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000397:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9670943	9670945	.	+	0	source_transcript=hg002_chrY_paternal_228.2;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.2,hg002_chrY_paternal_228.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000397;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000397;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000397;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670976	9671669	.	+	.	source_transcript=hg002_chrY_paternal_228.2;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.2,hg002_chrY_paternal_228.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000397;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000397;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000397:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9671670	9671881	.	+	.	source_transcript=hg002_chrY_paternal_228.2;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.2,hg002_chrY_paternal_228.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000397;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000397;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000397:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9669084	9671881	100	+	.	source_transcript=hg002_chrY_paternal_228.3;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.3,hg002_chrY_paternal_228.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000398;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_G0000154;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=HG003_chrY_T0000398;Name=TSPY10
HG003_chrY	CAT	exon	9669084	9669615	.	+	.	source_transcript=hg002_chrY_paternal_228.3;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.3,hg002_chrY_paternal_228.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000398;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000398;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000398:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9669130	9669615	.	+	0	source_transcript=hg002_chrY_paternal_228.3;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.3,hg002_chrY_paternal_228.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000398;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000398;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000398:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9669130	9669132	.	+	0	source_transcript=hg002_chrY_paternal_228.3;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.3,hg002_chrY_paternal_228.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000398;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000398;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000398;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9669616	9670222	.	+	.	source_transcript=hg002_chrY_paternal_228.3;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.3,hg002_chrY_paternal_228.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000398;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000398;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000398:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9670223	9670300	.	+	.	source_transcript=hg002_chrY_paternal_228.3;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.3,hg002_chrY_paternal_228.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000398;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000398;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000398:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9670223	9670300	.	+	0	source_transcript=hg002_chrY_paternal_228.3;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.3,hg002_chrY_paternal_228.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000398;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000398;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000398:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670301	9670428	.	+	.	source_transcript=hg002_chrY_paternal_228.3;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.3,hg002_chrY_paternal_228.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000398;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000398;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000398:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9670429	9670540	.	+	.	source_transcript=hg002_chrY_paternal_228.3;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.3,hg002_chrY_paternal_228.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000398;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000398;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000398:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9670429	9670540	.	+	0	source_transcript=hg002_chrY_paternal_228.3;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.3,hg002_chrY_paternal_228.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000398;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000398;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000398:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670541	9670648	.	+	.	source_transcript=hg002_chrY_paternal_228.3;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.3,hg002_chrY_paternal_228.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000398;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000398;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000398:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9670649	9670787	.	+	.	source_transcript=hg002_chrY_paternal_228.3;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.3,hg002_chrY_paternal_228.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000398;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000398;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000398:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9670649	9670787	.	+	2	source_transcript=hg002_chrY_paternal_228.3;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.3,hg002_chrY_paternal_228.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000398;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000398;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000398:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670788	9670893	.	+	.	source_transcript=hg002_chrY_paternal_228.3;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.3,hg002_chrY_paternal_228.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000398;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000398;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000398:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9670894	9670975	.	+	.	source_transcript=hg002_chrY_paternal_228.3;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.3,hg002_chrY_paternal_228.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000398;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000398;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000398:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9670894	9670945	.	+	1	source_transcript=hg002_chrY_paternal_228.3;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.3,hg002_chrY_paternal_228.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000398;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000398;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000398:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9670943	9670945	.	+	0	source_transcript=hg002_chrY_paternal_228.3;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.3,hg002_chrY_paternal_228.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000398;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000398;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000398;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670976	9671669	.	+	.	source_transcript=hg002_chrY_paternal_228.3;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.3,hg002_chrY_paternal_228.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000398;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000398;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000398:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9671670	9671881	.	+	.	source_transcript=hg002_chrY_paternal_228.3;source_transcript_name=hg002_chrY_paternal_228.4;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_228.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.3,hg002_chrY_paternal_228.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000398;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000398;transcript_name=hg002_chrY_paternal_228.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000398:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9669084	9671881	1000	+	.	source_transcript=hg002_chrY_paternal_228.4;source_transcript_name=hg002_chrY_paternal_228.1;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_228.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.4,hg002_chrY_paternal_228.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000399;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_G0000154;transcript_name=hg002_chrY_paternal_228.1;gene_name=TSPY10;ID=HG003_chrY_T0000399;Name=TSPY10
HG003_chrY	CAT	exon	9669084	9669615	.	+	.	source_transcript=hg002_chrY_paternal_228.4;source_transcript_name=hg002_chrY_paternal_228.1;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_228.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.4,hg002_chrY_paternal_228.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000399;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000399;transcript_name=hg002_chrY_paternal_228.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000399:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9669616	9670222	.	+	.	source_transcript=hg002_chrY_paternal_228.4;source_transcript_name=hg002_chrY_paternal_228.1;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_228.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.4,hg002_chrY_paternal_228.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000399;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000399;transcript_name=hg002_chrY_paternal_228.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000399:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9670223	9670300	.	+	.	source_transcript=hg002_chrY_paternal_228.4;source_transcript_name=hg002_chrY_paternal_228.1;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_228.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.4,hg002_chrY_paternal_228.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000399;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000399;transcript_name=hg002_chrY_paternal_228.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000399:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670301	9670428	.	+	.	source_transcript=hg002_chrY_paternal_228.4;source_transcript_name=hg002_chrY_paternal_228.1;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_228.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.4,hg002_chrY_paternal_228.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000399;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000399;transcript_name=hg002_chrY_paternal_228.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000399:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9670429	9670540	.	+	.	source_transcript=hg002_chrY_paternal_228.4;source_transcript_name=hg002_chrY_paternal_228.1;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_228.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.4,hg002_chrY_paternal_228.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000399;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000399;transcript_name=hg002_chrY_paternal_228.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000399:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670541	9670648	.	+	.	source_transcript=hg002_chrY_paternal_228.4;source_transcript_name=hg002_chrY_paternal_228.1;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_228.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.4,hg002_chrY_paternal_228.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000399;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000399;transcript_name=hg002_chrY_paternal_228.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000399:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9670649	9670787	.	+	.	source_transcript=hg002_chrY_paternal_228.4;source_transcript_name=hg002_chrY_paternal_228.1;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_228.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.4,hg002_chrY_paternal_228.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000399;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000399;transcript_name=hg002_chrY_paternal_228.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000399:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670788	9670882	.	+	.	source_transcript=hg002_chrY_paternal_228.4;source_transcript_name=hg002_chrY_paternal_228.1;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_228.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.4,hg002_chrY_paternal_228.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000399;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000399;transcript_name=hg002_chrY_paternal_228.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000399:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9670883	9670975	.	+	.	source_transcript=hg002_chrY_paternal_228.4;source_transcript_name=hg002_chrY_paternal_228.1;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_228.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.4,hg002_chrY_paternal_228.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000399;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000399;transcript_name=hg002_chrY_paternal_228.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000399:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670976	9671669	.	+	.	source_transcript=hg002_chrY_paternal_228.4;source_transcript_name=hg002_chrY_paternal_228.1;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_228.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.4,hg002_chrY_paternal_228.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000399;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000399;transcript_name=hg002_chrY_paternal_228.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000399:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9671670	9671881	.	+	.	source_transcript=hg002_chrY_paternal_228.4;source_transcript_name=hg002_chrY_paternal_228.1;source_gene=hg002_chrY_paternal_228;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_228;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_228.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_228.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_228.4,hg002_chrY_paternal_228.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000399;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000399;transcript_name=hg002_chrY_paternal_228.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000399:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9681175	9686857	.	-	.	source_gene_common_name=FAM197Y2;source_gene=hg002_chrY_paternal_229;alternative_source_transcripts=hg002_chrY_paternal_229.1,hg002_chrY_paternal_229.1;gene_id=HG003_chrY_G0000155;gene_biotype=lncRNA;gene_name=FAM197Y2;gene_sources=liftoff;ID=HG003_chrY_G0000155;Name=FAM197Y2
HG003_chrY	CAT	transcript	9681175	9686857	1000	-	.	source_transcript=hg002_chrY_paternal_229.1;source_transcript_name=hg002_chrY_paternal_229.1;source_gene=hg002_chrY_paternal_229;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_229;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_229.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_229.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_229.1,hg002_chrY_paternal_229.1;transcript_id=HG003_chrY_T0000400;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_G0000155;transcript_name=hg002_chrY_paternal_229.1;gene_name=FAM197Y2;ID=HG003_chrY_T0000400;Name=FAM197Y2
HG003_chrY	CAT	exon	9681175	9681234	.	-	.	source_transcript=hg002_chrY_paternal_229.1;source_transcript_name=hg002_chrY_paternal_229.1;source_gene=hg002_chrY_paternal_229;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_229;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_229.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_229.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_229.1,hg002_chrY_paternal_229.1;transcript_id=HG003_chrY_T0000400;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000400;transcript_name=hg002_chrY_paternal_229.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000400:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9681235	9684781	.	-	.	source_transcript=hg002_chrY_paternal_229.1;source_transcript_name=hg002_chrY_paternal_229.1;source_gene=hg002_chrY_paternal_229;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_229;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_229.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_229.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_229.1,hg002_chrY_paternal_229.1;transcript_id=HG003_chrY_T0000400;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000400;transcript_name=hg002_chrY_paternal_229.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000400:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9684782	9684940	.	-	.	source_transcript=hg002_chrY_paternal_229.1;source_transcript_name=hg002_chrY_paternal_229.1;source_gene=hg002_chrY_paternal_229;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_229;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_229.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_229.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_229.1,hg002_chrY_paternal_229.1;transcript_id=HG003_chrY_T0000400;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000400;transcript_name=hg002_chrY_paternal_229.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000400:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9684941	9686434	.	-	.	source_transcript=hg002_chrY_paternal_229.1;source_transcript_name=hg002_chrY_paternal_229.1;source_gene=hg002_chrY_paternal_229;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_229;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_229.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_229.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_229.1,hg002_chrY_paternal_229.1;transcript_id=HG003_chrY_T0000400;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000400;transcript_name=hg002_chrY_paternal_229.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000400:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9686435	9686580	.	-	.	source_transcript=hg002_chrY_paternal_229.1;source_transcript_name=hg002_chrY_paternal_229.1;source_gene=hg002_chrY_paternal_229;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_229;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_229.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_229.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_229.1,hg002_chrY_paternal_229.1;transcript_id=HG003_chrY_T0000400;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000400;transcript_name=hg002_chrY_paternal_229.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000400:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9686581	9686666	.	-	.	source_transcript=hg002_chrY_paternal_229.1;source_transcript_name=hg002_chrY_paternal_229.1;source_gene=hg002_chrY_paternal_229;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_229;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_229.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_229.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_229.1,hg002_chrY_paternal_229.1;transcript_id=HG003_chrY_T0000400;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000400;transcript_name=hg002_chrY_paternal_229.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000400:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9686667	9686857	.	-	.	source_transcript=hg002_chrY_paternal_229.1;source_transcript_name=hg002_chrY_paternal_229.1;source_gene=hg002_chrY_paternal_229;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_229;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_229.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_229.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_229.1,hg002_chrY_paternal_229.1;transcript_id=HG003_chrY_T0000400;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000400;transcript_name=hg002_chrY_paternal_229.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000400:3;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9689382	9692178	.	+	.	source_gene_common_name=TSPY1;source_gene=hg002_chrY_paternal_230;alternative_source_transcripts=hg002_chrY_paternal_230.1,hg002_chrY_paternal_230.1;gene_id=HG003_chrY_G0000156;gene_biotype=protein_coding;gene_name=TSPY1;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000156;Name=TSPY1
HG003_chrY	CAT	transcript	9689382	9692178	100	+	.	source_transcript=hg002_chrY_paternal_230.1;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.1,hg002_chrY_paternal_230.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000401;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_G0000156;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=HG003_chrY_T0000401;Name=TSPY1
HG003_chrY	CAT	exon	9689382	9689913	.	+	.	source_transcript=hg002_chrY_paternal_230.1;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.1,hg002_chrY_paternal_230.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000401;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000401;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000401:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9689428	9689913	.	+	0	source_transcript=hg002_chrY_paternal_230.1;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.1,hg002_chrY_paternal_230.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000401;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000401;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000401:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9689428	9689430	.	+	0	source_transcript=hg002_chrY_paternal_230.1;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.1,hg002_chrY_paternal_230.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000401;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000401;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=start_codon:HG003_chrY_T0000401;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9689914	9690520	.	+	.	source_transcript=hg002_chrY_paternal_230.1;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.1,hg002_chrY_paternal_230.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000401;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000401;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000401:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9690521	9690598	.	+	.	source_transcript=hg002_chrY_paternal_230.1;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.1,hg002_chrY_paternal_230.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000401;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000401;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000401:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9690521	9690598	.	+	0	source_transcript=hg002_chrY_paternal_230.1;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.1,hg002_chrY_paternal_230.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000401;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000401;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000401:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9690599	9690726	.	+	.	source_transcript=hg002_chrY_paternal_230.1;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.1,hg002_chrY_paternal_230.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000401;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000401;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000401:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9690727	9690838	.	+	.	source_transcript=hg002_chrY_paternal_230.1;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.1,hg002_chrY_paternal_230.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000401;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000401;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000401:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9690727	9690838	.	+	0	source_transcript=hg002_chrY_paternal_230.1;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.1,hg002_chrY_paternal_230.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000401;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000401;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000401:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9690839	9690939	.	+	.	source_transcript=hg002_chrY_paternal_230.1;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.1,hg002_chrY_paternal_230.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000401;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000401;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000401:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9690940	9691085	.	+	.	source_transcript=hg002_chrY_paternal_230.1;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.1,hg002_chrY_paternal_230.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000401;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000401;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000401:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9690940	9691085	.	+	2	source_transcript=hg002_chrY_paternal_230.1;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.1,hg002_chrY_paternal_230.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000401;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000401;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000401:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9691086	9691180	.	+	.	source_transcript=hg002_chrY_paternal_230.1;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.1,hg002_chrY_paternal_230.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000401;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000401;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000401:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9691181	9691273	.	+	.	source_transcript=hg002_chrY_paternal_230.1;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.1,hg002_chrY_paternal_230.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000401;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000401;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000401:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9691181	9691243	.	+	0	source_transcript=hg002_chrY_paternal_230.1;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.1,hg002_chrY_paternal_230.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000401;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000401;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000401:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9691241	9691243	.	+	0	source_transcript=hg002_chrY_paternal_230.1;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.1,hg002_chrY_paternal_230.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000401;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000401;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=stop_codon:HG003_chrY_T0000401;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9691274	9691967	.	+	.	source_transcript=hg002_chrY_paternal_230.1;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.1,hg002_chrY_paternal_230.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000401;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000401;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000401:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9691968	9692178	.	+	.	source_transcript=hg002_chrY_paternal_230.1;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.1,hg002_chrY_paternal_230.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000401;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000401;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000401:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9689382	9692178	100	+	.	source_transcript=hg002_chrY_paternal_230.2;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.2,hg002_chrY_paternal_230.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000402;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_G0000156;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=HG003_chrY_T0000402;Name=TSPY1
HG003_chrY	CAT	exon	9689382	9689514	.	+	.	source_transcript=hg002_chrY_paternal_230.2;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.2,hg002_chrY_paternal_230.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000402;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000402;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000402:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9689428	9689514	.	+	0	source_transcript=hg002_chrY_paternal_230.2;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.2,hg002_chrY_paternal_230.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000402;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000402;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000402:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9689428	9689430	.	+	0	source_transcript=hg002_chrY_paternal_230.2;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.2,hg002_chrY_paternal_230.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000402;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000402;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=start_codon:HG003_chrY_T0000402;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9689515	9689775	.	+	.	source_transcript=hg002_chrY_paternal_230.2;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.2,hg002_chrY_paternal_230.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000402;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000402;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000402:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9689776	9689913	.	+	.	source_transcript=hg002_chrY_paternal_230.2;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.2,hg002_chrY_paternal_230.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000402;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000402;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000402:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9689776	9689913	.	+	0	source_transcript=hg002_chrY_paternal_230.2;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.2,hg002_chrY_paternal_230.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000402;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000402;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000402:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9689914	9690520	.	+	.	source_transcript=hg002_chrY_paternal_230.2;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.2,hg002_chrY_paternal_230.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000402;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000402;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000402:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9690521	9690598	.	+	.	source_transcript=hg002_chrY_paternal_230.2;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.2,hg002_chrY_paternal_230.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000402;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000402;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000402:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9690521	9690598	.	+	0	source_transcript=hg002_chrY_paternal_230.2;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.2,hg002_chrY_paternal_230.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000402;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000402;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000402:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9690599	9690726	.	+	.	source_transcript=hg002_chrY_paternal_230.2;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.2,hg002_chrY_paternal_230.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000402;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000402;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000402:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9690727	9690838	.	+	.	source_transcript=hg002_chrY_paternal_230.2;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.2,hg002_chrY_paternal_230.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000402;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000402;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000402:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9690727	9690838	.	+	0	source_transcript=hg002_chrY_paternal_230.2;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.2,hg002_chrY_paternal_230.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000402;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000402;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000402:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9690839	9690939	.	+	.	source_transcript=hg002_chrY_paternal_230.2;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.2,hg002_chrY_paternal_230.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000402;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000402;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000402:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9690940	9691085	.	+	.	source_transcript=hg002_chrY_paternal_230.2;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.2,hg002_chrY_paternal_230.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000402;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000402;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000402:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9690940	9691085	.	+	2	source_transcript=hg002_chrY_paternal_230.2;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.2,hg002_chrY_paternal_230.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000402;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000402;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000402:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9691086	9691191	.	+	.	source_transcript=hg002_chrY_paternal_230.2;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.2,hg002_chrY_paternal_230.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000402;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000402;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000402:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9691192	9691273	.	+	.	source_transcript=hg002_chrY_paternal_230.2;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.2,hg002_chrY_paternal_230.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000402;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000402;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000402:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9691192	9691273	.	+	0	source_transcript=hg002_chrY_paternal_230.2;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.2,hg002_chrY_paternal_230.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000402;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000402;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000402:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9691274	9691967	.	+	.	source_transcript=hg002_chrY_paternal_230.2;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.2,hg002_chrY_paternal_230.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000402;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000402;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000402:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9691968	9692178	.	+	.	source_transcript=hg002_chrY_paternal_230.2;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.2,hg002_chrY_paternal_230.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000402;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000402;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000402:6;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9691968	9691990	.	+	2	source_transcript=hg002_chrY_paternal_230.2;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.2,hg002_chrY_paternal_230.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000402;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000402;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000402:6;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9691988	9691990	.	+	0	source_transcript=hg002_chrY_paternal_230.2;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.2,hg002_chrY_paternal_230.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000402;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000402;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=stop_codon:HG003_chrY_T0000402;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9689382	9692178	100	+	.	source_transcript=hg002_chrY_paternal_230.3;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.3,hg002_chrY_paternal_230.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000403;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_G0000156;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=HG003_chrY_T0000403;Name=TSPY1
HG003_chrY	CAT	exon	9689382	9689913	.	+	.	source_transcript=hg002_chrY_paternal_230.3;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.3,hg002_chrY_paternal_230.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000403;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000403;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000403:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9689428	9689913	.	+	0	source_transcript=hg002_chrY_paternal_230.3;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.3,hg002_chrY_paternal_230.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000403;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000403;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000403:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9689428	9689430	.	+	0	source_transcript=hg002_chrY_paternal_230.3;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.3,hg002_chrY_paternal_230.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000403;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000403;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=start_codon:HG003_chrY_T0000403;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9689914	9690520	.	+	.	source_transcript=hg002_chrY_paternal_230.3;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.3,hg002_chrY_paternal_230.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000403;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000403;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000403:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9690521	9690598	.	+	.	source_transcript=hg002_chrY_paternal_230.3;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.3,hg002_chrY_paternal_230.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000403;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000403;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000403:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9690521	9690598	.	+	0	source_transcript=hg002_chrY_paternal_230.3;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.3,hg002_chrY_paternal_230.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000403;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000403;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000403:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9690599	9690726	.	+	.	source_transcript=hg002_chrY_paternal_230.3;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.3,hg002_chrY_paternal_230.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000403;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000403;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000403:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9690727	9690838	.	+	.	source_transcript=hg002_chrY_paternal_230.3;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.3,hg002_chrY_paternal_230.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000403;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000403;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000403:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9690727	9690838	.	+	0	source_transcript=hg002_chrY_paternal_230.3;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.3,hg002_chrY_paternal_230.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000403;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000403;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000403:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9690839	9690939	.	+	.	source_transcript=hg002_chrY_paternal_230.3;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.3,hg002_chrY_paternal_230.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000403;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000403;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000403:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9690940	9691085	.	+	.	source_transcript=hg002_chrY_paternal_230.3;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.3,hg002_chrY_paternal_230.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000403;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000403;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000403:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9690940	9691085	.	+	2	source_transcript=hg002_chrY_paternal_230.3;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.3,hg002_chrY_paternal_230.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000403;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000403;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000403:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9691086	9691191	.	+	.	source_transcript=hg002_chrY_paternal_230.3;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.3,hg002_chrY_paternal_230.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000403;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000403;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000403:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9691192	9691273	.	+	.	source_transcript=hg002_chrY_paternal_230.3;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.3,hg002_chrY_paternal_230.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000403;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000403;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000403:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9691192	9691273	.	+	0	source_transcript=hg002_chrY_paternal_230.3;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.3,hg002_chrY_paternal_230.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000403;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000403;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000403:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9691274	9691967	.	+	.	source_transcript=hg002_chrY_paternal_230.3;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.3,hg002_chrY_paternal_230.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000403;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000403;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000403:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9691968	9692178	.	+	.	source_transcript=hg002_chrY_paternal_230.3;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.3,hg002_chrY_paternal_230.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000403;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000403;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000403:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9691968	9691990	.	+	2	source_transcript=hg002_chrY_paternal_230.3;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.3,hg002_chrY_paternal_230.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000403;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000403;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000403:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9691988	9691990	.	+	0	source_transcript=hg002_chrY_paternal_230.3;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.3,hg002_chrY_paternal_230.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000403;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000403;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=stop_codon:HG003_chrY_T0000403;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9689382	9692178	100	+	.	source_transcript=hg002_chrY_paternal_230.4;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.4,hg002_chrY_paternal_230.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000404;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_G0000156;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=HG003_chrY_T0000404;Name=TSPY1
HG003_chrY	CAT	exon	9689382	9689913	.	+	.	source_transcript=hg002_chrY_paternal_230.4;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.4,hg002_chrY_paternal_230.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000404;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000404;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000404:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9689428	9689913	.	+	0	source_transcript=hg002_chrY_paternal_230.4;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.4,hg002_chrY_paternal_230.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000404;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000404;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000404:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9689428	9689430	.	+	0	source_transcript=hg002_chrY_paternal_230.4;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.4,hg002_chrY_paternal_230.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000404;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000404;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=start_codon:HG003_chrY_T0000404;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9689914	9690520	.	+	.	source_transcript=hg002_chrY_paternal_230.4;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.4,hg002_chrY_paternal_230.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000404;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000404;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000404:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9690521	9690598	.	+	.	source_transcript=hg002_chrY_paternal_230.4;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.4,hg002_chrY_paternal_230.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000404;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000404;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000404:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9690521	9690598	.	+	0	source_transcript=hg002_chrY_paternal_230.4;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.4,hg002_chrY_paternal_230.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000404;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000404;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000404:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9690599	9690726	.	+	.	source_transcript=hg002_chrY_paternal_230.4;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.4,hg002_chrY_paternal_230.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000404;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000404;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000404:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9690727	9690838	.	+	.	source_transcript=hg002_chrY_paternal_230.4;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.4,hg002_chrY_paternal_230.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000404;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000404;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000404:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9690727	9690838	.	+	0	source_transcript=hg002_chrY_paternal_230.4;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.4,hg002_chrY_paternal_230.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000404;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000404;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000404:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9690839	9690946	.	+	.	source_transcript=hg002_chrY_paternal_230.4;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.4,hg002_chrY_paternal_230.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000404;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000404;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000404:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9690947	9691085	.	+	.	source_transcript=hg002_chrY_paternal_230.4;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.4,hg002_chrY_paternal_230.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000404;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000404;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000404:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9690947	9691085	.	+	2	source_transcript=hg002_chrY_paternal_230.4;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.4,hg002_chrY_paternal_230.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000404;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000404;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000404:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9691086	9691191	.	+	.	source_transcript=hg002_chrY_paternal_230.4;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.4,hg002_chrY_paternal_230.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000404;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000404;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000404:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9691192	9691273	.	+	.	source_transcript=hg002_chrY_paternal_230.4;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.4,hg002_chrY_paternal_230.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000404;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000404;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000404:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9691192	9691243	.	+	1	source_transcript=hg002_chrY_paternal_230.4;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.4,hg002_chrY_paternal_230.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000404;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000404;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000404:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9691241	9691243	.	+	0	source_transcript=hg002_chrY_paternal_230.4;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.4,hg002_chrY_paternal_230.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000404;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000404;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=stop_codon:HG003_chrY_T0000404;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9691274	9691967	.	+	.	source_transcript=hg002_chrY_paternal_230.4;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.4,hg002_chrY_paternal_230.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000404;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000404;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000404:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9691968	9692178	.	+	.	source_transcript=hg002_chrY_paternal_230.4;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.4,hg002_chrY_paternal_230.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000404;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000404;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000404:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9689382	9692178	1000	+	.	source_transcript=hg002_chrY_paternal_230.5;source_transcript_name=hg002_chrY_paternal_230.1;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_230.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.5,hg002_chrY_paternal_230.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000405;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_G0000156;transcript_name=hg002_chrY_paternal_230.1;gene_name=TSPY1;ID=HG003_chrY_T0000405;Name=TSPY1
HG003_chrY	CAT	exon	9689382	9689913	.	+	.	source_transcript=hg002_chrY_paternal_230.5;source_transcript_name=hg002_chrY_paternal_230.1;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_230.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.5,hg002_chrY_paternal_230.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000405;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000405;transcript_name=hg002_chrY_paternal_230.1;gene_name=TSPY1;ID=exon:HG003_chrY_T0000405:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9689914	9690520	.	+	.	source_transcript=hg002_chrY_paternal_230.5;source_transcript_name=hg002_chrY_paternal_230.1;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_230.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.5,hg002_chrY_paternal_230.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000405;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000405;transcript_name=hg002_chrY_paternal_230.1;gene_name=TSPY1;ID=intron:HG003_chrY_T0000405:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9690521	9690598	.	+	.	source_transcript=hg002_chrY_paternal_230.5;source_transcript_name=hg002_chrY_paternal_230.1;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_230.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.5,hg002_chrY_paternal_230.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000405;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000405;transcript_name=hg002_chrY_paternal_230.1;gene_name=TSPY1;ID=exon:HG003_chrY_T0000405:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9690599	9690726	.	+	.	source_transcript=hg002_chrY_paternal_230.5;source_transcript_name=hg002_chrY_paternal_230.1;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_230.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.5,hg002_chrY_paternal_230.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000405;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000405;transcript_name=hg002_chrY_paternal_230.1;gene_name=TSPY1;ID=intron:HG003_chrY_T0000405:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9690727	9690838	.	+	.	source_transcript=hg002_chrY_paternal_230.5;source_transcript_name=hg002_chrY_paternal_230.1;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_230.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.5,hg002_chrY_paternal_230.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000405;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000405;transcript_name=hg002_chrY_paternal_230.1;gene_name=TSPY1;ID=exon:HG003_chrY_T0000405:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9690839	9690946	.	+	.	source_transcript=hg002_chrY_paternal_230.5;source_transcript_name=hg002_chrY_paternal_230.1;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_230.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.5,hg002_chrY_paternal_230.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000405;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000405;transcript_name=hg002_chrY_paternal_230.1;gene_name=TSPY1;ID=intron:HG003_chrY_T0000405:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9690947	9691085	.	+	.	source_transcript=hg002_chrY_paternal_230.5;source_transcript_name=hg002_chrY_paternal_230.1;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_230.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.5,hg002_chrY_paternal_230.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000405;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000405;transcript_name=hg002_chrY_paternal_230.1;gene_name=TSPY1;ID=exon:HG003_chrY_T0000405:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9691086	9691180	.	+	.	source_transcript=hg002_chrY_paternal_230.5;source_transcript_name=hg002_chrY_paternal_230.1;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_230.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.5,hg002_chrY_paternal_230.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000405;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000405;transcript_name=hg002_chrY_paternal_230.1;gene_name=TSPY1;ID=intron:HG003_chrY_T0000405:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9691181	9691273	.	+	.	source_transcript=hg002_chrY_paternal_230.5;source_transcript_name=hg002_chrY_paternal_230.1;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_230.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.5,hg002_chrY_paternal_230.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000405;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000405;transcript_name=hg002_chrY_paternal_230.1;gene_name=TSPY1;ID=exon:HG003_chrY_T0000405:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9691274	9691967	.	+	.	source_transcript=hg002_chrY_paternal_230.5;source_transcript_name=hg002_chrY_paternal_230.1;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_230.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.5,hg002_chrY_paternal_230.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000405;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000405;transcript_name=hg002_chrY_paternal_230.1;gene_name=TSPY1;ID=intron:HG003_chrY_T0000405:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9691968	9692178	.	+	.	source_transcript=hg002_chrY_paternal_230.5;source_transcript_name=hg002_chrY_paternal_230.1;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_230.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_230.5,hg002_chrY_paternal_230.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000405;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000405;transcript_name=hg002_chrY_paternal_230.1;gene_name=TSPY1;ID=exon:HG003_chrY_T0000405:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9701483	9707168	.	-	.	source_gene_common_name=FAM197Y2;source_gene=hg002_chrY_paternal_231;alternative_source_transcripts=hg002_chrY_paternal_231.1,hg002_chrY_paternal_231.1;gene_id=HG003_chrY_G0000157;gene_biotype=lncRNA;gene_name=FAM197Y2;gene_sources=liftoff;ID=HG003_chrY_G0000157;Name=FAM197Y2
HG003_chrY	CAT	transcript	9701483	9707168	1000	-	.	source_transcript=hg002_chrY_paternal_231.1;source_transcript_name=hg002_chrY_paternal_231.1;source_gene=hg002_chrY_paternal_231;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_231;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_231.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_231.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_231.1,hg002_chrY_paternal_231.1;transcript_id=HG003_chrY_T0000406;gene_id=HG003_chrY_G0000157;Parent=HG003_chrY_G0000157;transcript_name=hg002_chrY_paternal_231.1;gene_name=FAM197Y2;ID=HG003_chrY_T0000406;Name=FAM197Y2
HG003_chrY	CAT	exon	9701483	9701542	.	-	.	source_transcript=hg002_chrY_paternal_231.1;source_transcript_name=hg002_chrY_paternal_231.1;source_gene=hg002_chrY_paternal_231;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_231;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_231.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_231.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_231.1,hg002_chrY_paternal_231.1;transcript_id=HG003_chrY_T0000406;gene_id=HG003_chrY_G0000157;Parent=HG003_chrY_T0000406;transcript_name=hg002_chrY_paternal_231.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000406:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9701543	9705092	.	-	.	source_transcript=hg002_chrY_paternal_231.1;source_transcript_name=hg002_chrY_paternal_231.1;source_gene=hg002_chrY_paternal_231;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_231;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_231.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_231.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_231.1,hg002_chrY_paternal_231.1;transcript_id=HG003_chrY_T0000406;gene_id=HG003_chrY_G0000157;Parent=HG003_chrY_T0000406;transcript_name=hg002_chrY_paternal_231.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000406:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9705093	9705251	.	-	.	source_transcript=hg002_chrY_paternal_231.1;source_transcript_name=hg002_chrY_paternal_231.1;source_gene=hg002_chrY_paternal_231;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_231;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_231.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_231.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_231.1,hg002_chrY_paternal_231.1;transcript_id=HG003_chrY_T0000406;gene_id=HG003_chrY_G0000157;Parent=HG003_chrY_T0000406;transcript_name=hg002_chrY_paternal_231.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000406:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9705252	9706745	.	-	.	source_transcript=hg002_chrY_paternal_231.1;source_transcript_name=hg002_chrY_paternal_231.1;source_gene=hg002_chrY_paternal_231;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_231;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_231.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_231.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_231.1,hg002_chrY_paternal_231.1;transcript_id=HG003_chrY_T0000406;gene_id=HG003_chrY_G0000157;Parent=HG003_chrY_T0000406;transcript_name=hg002_chrY_paternal_231.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000406:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9706746	9706891	.	-	.	source_transcript=hg002_chrY_paternal_231.1;source_transcript_name=hg002_chrY_paternal_231.1;source_gene=hg002_chrY_paternal_231;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_231;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_231.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_231.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_231.1,hg002_chrY_paternal_231.1;transcript_id=HG003_chrY_T0000406;gene_id=HG003_chrY_G0000157;Parent=HG003_chrY_T0000406;transcript_name=hg002_chrY_paternal_231.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000406:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9706892	9706977	.	-	.	source_transcript=hg002_chrY_paternal_231.1;source_transcript_name=hg002_chrY_paternal_231.1;source_gene=hg002_chrY_paternal_231;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_231;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_231.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_231.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_231.1,hg002_chrY_paternal_231.1;transcript_id=HG003_chrY_T0000406;gene_id=HG003_chrY_G0000157;Parent=HG003_chrY_T0000406;transcript_name=hg002_chrY_paternal_231.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000406:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9706978	9707168	.	-	.	source_transcript=hg002_chrY_paternal_231.1;source_transcript_name=hg002_chrY_paternal_231.1;source_gene=hg002_chrY_paternal_231;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_231;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_231.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_231.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_231.1,hg002_chrY_paternal_231.1;transcript_id=HG003_chrY_T0000406;gene_id=HG003_chrY_G0000157;Parent=HG003_chrY_T0000406;transcript_name=hg002_chrY_paternal_231.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000406:3;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9709692	9712488	.	+	.	source_gene_common_name=TSPY1;source_gene=hg002_chrY_paternal_232;alternative_source_transcripts=hg002_chrY_paternal_232.1,hg002_chrY_paternal_232.1;gene_id=HG003_chrY_G0000158;gene_biotype=protein_coding;gene_name=TSPY1;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000158;Name=TSPY1
HG003_chrY	CAT	transcript	9709692	9712488	100	+	.	source_transcript=hg002_chrY_paternal_232.1;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.1,hg002_chrY_paternal_232.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000407;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_G0000158;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=HG003_chrY_T0000407;Name=TSPY1
HG003_chrY	CAT	exon	9709692	9710223	.	+	.	source_transcript=hg002_chrY_paternal_232.1;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.1,hg002_chrY_paternal_232.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000407;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000407;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000407:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9709738	9710223	.	+	0	source_transcript=hg002_chrY_paternal_232.1;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.1,hg002_chrY_paternal_232.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000407;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000407;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000407:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9709738	9709740	.	+	0	source_transcript=hg002_chrY_paternal_232.1;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.1,hg002_chrY_paternal_232.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000407;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000407;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=start_codon:HG003_chrY_T0000407;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9710224	9710830	.	+	.	source_transcript=hg002_chrY_paternal_232.1;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.1,hg002_chrY_paternal_232.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000407;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000407;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000407:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9710831	9710908	.	+	.	source_transcript=hg002_chrY_paternal_232.1;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.1,hg002_chrY_paternal_232.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000407;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000407;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000407:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9710831	9710908	.	+	0	source_transcript=hg002_chrY_paternal_232.1;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.1,hg002_chrY_paternal_232.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000407;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000407;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000407:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9710909	9711036	.	+	.	source_transcript=hg002_chrY_paternal_232.1;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.1,hg002_chrY_paternal_232.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000407;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000407;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000407:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9711037	9711148	.	+	.	source_transcript=hg002_chrY_paternal_232.1;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.1,hg002_chrY_paternal_232.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000407;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000407;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000407:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9711037	9711148	.	+	0	source_transcript=hg002_chrY_paternal_232.1;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.1,hg002_chrY_paternal_232.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000407;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000407;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000407:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9711149	9711249	.	+	.	source_transcript=hg002_chrY_paternal_232.1;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.1,hg002_chrY_paternal_232.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000407;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000407;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000407:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9711250	9711395	.	+	.	source_transcript=hg002_chrY_paternal_232.1;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.1,hg002_chrY_paternal_232.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000407;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000407;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000407:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9711250	9711395	.	+	2	source_transcript=hg002_chrY_paternal_232.1;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.1,hg002_chrY_paternal_232.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000407;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000407;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000407:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9711396	9711490	.	+	.	source_transcript=hg002_chrY_paternal_232.1;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.1,hg002_chrY_paternal_232.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000407;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000407;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000407:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9711491	9711583	.	+	.	source_transcript=hg002_chrY_paternal_232.1;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.1,hg002_chrY_paternal_232.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000407;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000407;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000407:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9711491	9711553	.	+	0	source_transcript=hg002_chrY_paternal_232.1;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.1,hg002_chrY_paternal_232.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000407;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000407;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000407:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9711551	9711553	.	+	0	source_transcript=hg002_chrY_paternal_232.1;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.1,hg002_chrY_paternal_232.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000407;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000407;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=stop_codon:HG003_chrY_T0000407;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9711584	9712277	.	+	.	source_transcript=hg002_chrY_paternal_232.1;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.1,hg002_chrY_paternal_232.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000407;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000407;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000407:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9712278	9712488	.	+	.	source_transcript=hg002_chrY_paternal_232.1;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.1,hg002_chrY_paternal_232.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000407;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000407;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000407:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9709692	9712488	100	+	.	source_transcript=hg002_chrY_paternal_232.2;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.2,hg002_chrY_paternal_232.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000408;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_G0000158;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=HG003_chrY_T0000408;Name=TSPY1
HG003_chrY	CAT	exon	9709692	9709824	.	+	.	source_transcript=hg002_chrY_paternal_232.2;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.2,hg002_chrY_paternal_232.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000408;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000408;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000408:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9709738	9709824	.	+	0	source_transcript=hg002_chrY_paternal_232.2;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.2,hg002_chrY_paternal_232.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000408;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000408;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000408:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9709738	9709740	.	+	0	source_transcript=hg002_chrY_paternal_232.2;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.2,hg002_chrY_paternal_232.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000408;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000408;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=start_codon:HG003_chrY_T0000408;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9709825	9710085	.	+	.	source_transcript=hg002_chrY_paternal_232.2;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.2,hg002_chrY_paternal_232.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000408;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000408;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000408:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9710086	9710223	.	+	.	source_transcript=hg002_chrY_paternal_232.2;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.2,hg002_chrY_paternal_232.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000408;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000408;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000408:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9710086	9710223	.	+	0	source_transcript=hg002_chrY_paternal_232.2;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.2,hg002_chrY_paternal_232.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000408;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000408;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000408:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9710224	9710830	.	+	.	source_transcript=hg002_chrY_paternal_232.2;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.2,hg002_chrY_paternal_232.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000408;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000408;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000408:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9710831	9710908	.	+	.	source_transcript=hg002_chrY_paternal_232.2;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.2,hg002_chrY_paternal_232.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000408;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000408;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000408:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9710831	9710908	.	+	0	source_transcript=hg002_chrY_paternal_232.2;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.2,hg002_chrY_paternal_232.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000408;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000408;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000408:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9710909	9711036	.	+	.	source_transcript=hg002_chrY_paternal_232.2;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.2,hg002_chrY_paternal_232.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000408;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000408;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000408:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9711037	9711148	.	+	.	source_transcript=hg002_chrY_paternal_232.2;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.2,hg002_chrY_paternal_232.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000408;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000408;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000408:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9711037	9711148	.	+	0	source_transcript=hg002_chrY_paternal_232.2;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.2,hg002_chrY_paternal_232.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000408;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000408;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000408:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9711149	9711249	.	+	.	source_transcript=hg002_chrY_paternal_232.2;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.2,hg002_chrY_paternal_232.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000408;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000408;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000408:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9711250	9711395	.	+	.	source_transcript=hg002_chrY_paternal_232.2;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.2,hg002_chrY_paternal_232.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000408;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000408;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000408:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9711250	9711395	.	+	2	source_transcript=hg002_chrY_paternal_232.2;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.2,hg002_chrY_paternal_232.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000408;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000408;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000408:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9711396	9711501	.	+	.	source_transcript=hg002_chrY_paternal_232.2;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.2,hg002_chrY_paternal_232.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000408;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000408;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000408:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9711502	9711583	.	+	.	source_transcript=hg002_chrY_paternal_232.2;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.2,hg002_chrY_paternal_232.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000408;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000408;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000408:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9711502	9711583	.	+	0	source_transcript=hg002_chrY_paternal_232.2;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.2,hg002_chrY_paternal_232.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000408;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000408;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000408:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9711584	9712277	.	+	.	source_transcript=hg002_chrY_paternal_232.2;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.2,hg002_chrY_paternal_232.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000408;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000408;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000408:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9712278	9712488	.	+	.	source_transcript=hg002_chrY_paternal_232.2;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.2,hg002_chrY_paternal_232.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000408;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000408;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000408:6;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9712278	9712300	.	+	2	source_transcript=hg002_chrY_paternal_232.2;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.2,hg002_chrY_paternal_232.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000408;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000408;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000408:6;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9712298	9712300	.	+	0	source_transcript=hg002_chrY_paternal_232.2;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.2,hg002_chrY_paternal_232.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000408;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000408;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=stop_codon:HG003_chrY_T0000408;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9709692	9712488	100	+	.	source_transcript=hg002_chrY_paternal_232.3;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.3,hg002_chrY_paternal_232.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000409;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_G0000158;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=HG003_chrY_T0000409;Name=TSPY1
HG003_chrY	CAT	exon	9709692	9710223	.	+	.	source_transcript=hg002_chrY_paternal_232.3;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.3,hg002_chrY_paternal_232.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000409;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000409;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000409:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9709738	9710223	.	+	0	source_transcript=hg002_chrY_paternal_232.3;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.3,hg002_chrY_paternal_232.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000409;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000409;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000409:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9709738	9709740	.	+	0	source_transcript=hg002_chrY_paternal_232.3;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.3,hg002_chrY_paternal_232.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000409;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000409;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=start_codon:HG003_chrY_T0000409;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9710224	9710830	.	+	.	source_transcript=hg002_chrY_paternal_232.3;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.3,hg002_chrY_paternal_232.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000409;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000409;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000409:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9710831	9710908	.	+	.	source_transcript=hg002_chrY_paternal_232.3;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.3,hg002_chrY_paternal_232.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000409;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000409;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000409:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9710831	9710908	.	+	0	source_transcript=hg002_chrY_paternal_232.3;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.3,hg002_chrY_paternal_232.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000409;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000409;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000409:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9710909	9711036	.	+	.	source_transcript=hg002_chrY_paternal_232.3;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.3,hg002_chrY_paternal_232.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000409;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000409;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000409:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9711037	9711148	.	+	.	source_transcript=hg002_chrY_paternal_232.3;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.3,hg002_chrY_paternal_232.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000409;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000409;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000409:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9711037	9711148	.	+	0	source_transcript=hg002_chrY_paternal_232.3;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.3,hg002_chrY_paternal_232.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000409;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000409;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000409:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9711149	9711249	.	+	.	source_transcript=hg002_chrY_paternal_232.3;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.3,hg002_chrY_paternal_232.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000409;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000409;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000409:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9711250	9711395	.	+	.	source_transcript=hg002_chrY_paternal_232.3;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.3,hg002_chrY_paternal_232.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000409;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000409;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000409:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9711250	9711395	.	+	2	source_transcript=hg002_chrY_paternal_232.3;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.3,hg002_chrY_paternal_232.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000409;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000409;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000409:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9711396	9711501	.	+	.	source_transcript=hg002_chrY_paternal_232.3;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.3,hg002_chrY_paternal_232.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000409;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000409;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000409:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9711502	9711583	.	+	.	source_transcript=hg002_chrY_paternal_232.3;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.3,hg002_chrY_paternal_232.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000409;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000409;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000409:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9711502	9711583	.	+	0	source_transcript=hg002_chrY_paternal_232.3;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.3,hg002_chrY_paternal_232.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000409;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000409;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000409:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9711584	9712277	.	+	.	source_transcript=hg002_chrY_paternal_232.3;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.3,hg002_chrY_paternal_232.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000409;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000409;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000409:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9712278	9712488	.	+	.	source_transcript=hg002_chrY_paternal_232.3;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.3,hg002_chrY_paternal_232.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000409;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000409;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000409:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9712278	9712300	.	+	2	source_transcript=hg002_chrY_paternal_232.3;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.3,hg002_chrY_paternal_232.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000409;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000409;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000409:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9712298	9712300	.	+	0	source_transcript=hg002_chrY_paternal_232.3;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.3,hg002_chrY_paternal_232.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000409;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000409;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=stop_codon:HG003_chrY_T0000409;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9709692	9712488	100	+	.	source_transcript=hg002_chrY_paternal_232.4;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.4,hg002_chrY_paternal_232.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000410;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_G0000158;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=HG003_chrY_T0000410;Name=TSPY1
HG003_chrY	CAT	exon	9709692	9710223	.	+	.	source_transcript=hg002_chrY_paternal_232.4;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.4,hg002_chrY_paternal_232.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000410;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000410;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000410:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9709738	9710223	.	+	0	source_transcript=hg002_chrY_paternal_232.4;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.4,hg002_chrY_paternal_232.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000410;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000410;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000410:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9709738	9709740	.	+	0	source_transcript=hg002_chrY_paternal_232.4;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.4,hg002_chrY_paternal_232.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000410;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000410;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=start_codon:HG003_chrY_T0000410;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9710224	9710830	.	+	.	source_transcript=hg002_chrY_paternal_232.4;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.4,hg002_chrY_paternal_232.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000410;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000410;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000410:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9710831	9710908	.	+	.	source_transcript=hg002_chrY_paternal_232.4;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.4,hg002_chrY_paternal_232.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000410;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000410;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000410:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9710831	9710908	.	+	0	source_transcript=hg002_chrY_paternal_232.4;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.4,hg002_chrY_paternal_232.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000410;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000410;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000410:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9710909	9711036	.	+	.	source_transcript=hg002_chrY_paternal_232.4;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.4,hg002_chrY_paternal_232.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000410;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000410;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000410:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9711037	9711148	.	+	.	source_transcript=hg002_chrY_paternal_232.4;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.4,hg002_chrY_paternal_232.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000410;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000410;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000410:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9711037	9711148	.	+	0	source_transcript=hg002_chrY_paternal_232.4;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.4,hg002_chrY_paternal_232.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000410;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000410;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000410:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9711149	9711256	.	+	.	source_transcript=hg002_chrY_paternal_232.4;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.4,hg002_chrY_paternal_232.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000410;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000410;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000410:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9711257	9711395	.	+	.	source_transcript=hg002_chrY_paternal_232.4;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.4,hg002_chrY_paternal_232.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000410;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000410;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000410:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9711257	9711395	.	+	2	source_transcript=hg002_chrY_paternal_232.4;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.4,hg002_chrY_paternal_232.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000410;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000410;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000410:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9711396	9711501	.	+	.	source_transcript=hg002_chrY_paternal_232.4;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.4,hg002_chrY_paternal_232.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000410;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000410;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000410:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9711502	9711583	.	+	.	source_transcript=hg002_chrY_paternal_232.4;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.4,hg002_chrY_paternal_232.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000410;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000410;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000410:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9711502	9711553	.	+	1	source_transcript=hg002_chrY_paternal_232.4;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.4,hg002_chrY_paternal_232.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000410;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000410;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000410:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9711551	9711553	.	+	0	source_transcript=hg002_chrY_paternal_232.4;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.4,hg002_chrY_paternal_232.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000410;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000410;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=stop_codon:HG003_chrY_T0000410;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9711584	9712277	.	+	.	source_transcript=hg002_chrY_paternal_232.4;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.4,hg002_chrY_paternal_232.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000410;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000410;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=intron:HG003_chrY_T0000410:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9712278	9712488	.	+	.	source_transcript=hg002_chrY_paternal_232.4;source_transcript_name=hg002_chrY_paternal_232.5;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_232.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.4,hg002_chrY_paternal_232.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000410;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000410;transcript_name=hg002_chrY_paternal_232.5;gene_name=TSPY1;ID=exon:HG003_chrY_T0000410:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9709692	9712488	1000	+	.	source_transcript=hg002_chrY_paternal_232.5;source_transcript_name=hg002_chrY_paternal_232.1;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_232.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.5,hg002_chrY_paternal_232.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000411;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_G0000158;transcript_name=hg002_chrY_paternal_232.1;gene_name=TSPY1;ID=HG003_chrY_T0000411;Name=TSPY1
HG003_chrY	CAT	exon	9709692	9710223	.	+	.	source_transcript=hg002_chrY_paternal_232.5;source_transcript_name=hg002_chrY_paternal_232.1;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_232.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.5,hg002_chrY_paternal_232.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000411;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000411;transcript_name=hg002_chrY_paternal_232.1;gene_name=TSPY1;ID=exon:HG003_chrY_T0000411:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9710224	9710830	.	+	.	source_transcript=hg002_chrY_paternal_232.5;source_transcript_name=hg002_chrY_paternal_232.1;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_232.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.5,hg002_chrY_paternal_232.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000411;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000411;transcript_name=hg002_chrY_paternal_232.1;gene_name=TSPY1;ID=intron:HG003_chrY_T0000411:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9710831	9710908	.	+	.	source_transcript=hg002_chrY_paternal_232.5;source_transcript_name=hg002_chrY_paternal_232.1;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_232.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.5,hg002_chrY_paternal_232.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000411;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000411;transcript_name=hg002_chrY_paternal_232.1;gene_name=TSPY1;ID=exon:HG003_chrY_T0000411:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9710909	9711036	.	+	.	source_transcript=hg002_chrY_paternal_232.5;source_transcript_name=hg002_chrY_paternal_232.1;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_232.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.5,hg002_chrY_paternal_232.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000411;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000411;transcript_name=hg002_chrY_paternal_232.1;gene_name=TSPY1;ID=intron:HG003_chrY_T0000411:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9711037	9711148	.	+	.	source_transcript=hg002_chrY_paternal_232.5;source_transcript_name=hg002_chrY_paternal_232.1;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_232.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.5,hg002_chrY_paternal_232.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000411;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000411;transcript_name=hg002_chrY_paternal_232.1;gene_name=TSPY1;ID=exon:HG003_chrY_T0000411:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9711149	9711256	.	+	.	source_transcript=hg002_chrY_paternal_232.5;source_transcript_name=hg002_chrY_paternal_232.1;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_232.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.5,hg002_chrY_paternal_232.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000411;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000411;transcript_name=hg002_chrY_paternal_232.1;gene_name=TSPY1;ID=intron:HG003_chrY_T0000411:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9711257	9711395	.	+	.	source_transcript=hg002_chrY_paternal_232.5;source_transcript_name=hg002_chrY_paternal_232.1;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_232.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.5,hg002_chrY_paternal_232.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000411;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000411;transcript_name=hg002_chrY_paternal_232.1;gene_name=TSPY1;ID=exon:HG003_chrY_T0000411:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9711396	9711490	.	+	.	source_transcript=hg002_chrY_paternal_232.5;source_transcript_name=hg002_chrY_paternal_232.1;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_232.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.5,hg002_chrY_paternal_232.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000411;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000411;transcript_name=hg002_chrY_paternal_232.1;gene_name=TSPY1;ID=intron:HG003_chrY_T0000411:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9711491	9711583	.	+	.	source_transcript=hg002_chrY_paternal_232.5;source_transcript_name=hg002_chrY_paternal_232.1;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_232.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.5,hg002_chrY_paternal_232.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000411;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000411;transcript_name=hg002_chrY_paternal_232.1;gene_name=TSPY1;ID=exon:HG003_chrY_T0000411:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9711584	9712277	.	+	.	source_transcript=hg002_chrY_paternal_232.5;source_transcript_name=hg002_chrY_paternal_232.1;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_232.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.5,hg002_chrY_paternal_232.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000411;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000411;transcript_name=hg002_chrY_paternal_232.1;gene_name=TSPY1;ID=intron:HG003_chrY_T0000411:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9712278	9712488	.	+	.	source_transcript=hg002_chrY_paternal_232.5;source_transcript_name=hg002_chrY_paternal_232.1;source_gene=hg002_chrY_paternal_232;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_232;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_232.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_232.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.5,hg002_chrY_paternal_232.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000411;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000411;transcript_name=hg002_chrY_paternal_232.1;gene_name=TSPY1;ID=exon:HG003_chrY_T0000411:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9721759	9727444	.	-	.	source_gene_common_name=FAM197Y2;source_gene=hg002_chrY_paternal_233;alternative_source_transcripts=hg002_chrY_paternal_233.1,hg002_chrY_paternal_233.1;gene_id=HG003_chrY_G0000159;gene_biotype=lncRNA;gene_name=FAM197Y2;gene_sources=liftoff;ID=HG003_chrY_G0000159;Name=FAM197Y2
HG003_chrY	CAT	transcript	9721759	9727444	1000	-	.	source_transcript=hg002_chrY_paternal_233.1;source_transcript_name=hg002_chrY_paternal_233.1;source_gene=hg002_chrY_paternal_233;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_233;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_233.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_233.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_233.1,hg002_chrY_paternal_233.1;transcript_id=HG003_chrY_T0000412;gene_id=HG003_chrY_G0000159;Parent=HG003_chrY_G0000159;transcript_name=hg002_chrY_paternal_233.1;gene_name=FAM197Y2;ID=HG003_chrY_T0000412;Name=FAM197Y2
HG003_chrY	CAT	exon	9721759	9721818	.	-	.	source_transcript=hg002_chrY_paternal_233.1;source_transcript_name=hg002_chrY_paternal_233.1;source_gene=hg002_chrY_paternal_233;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_233;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_233.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_233.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_233.1,hg002_chrY_paternal_233.1;transcript_id=HG003_chrY_T0000412;gene_id=HG003_chrY_G0000159;Parent=HG003_chrY_T0000412;transcript_name=hg002_chrY_paternal_233.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000412:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9721819	9725368	.	-	.	source_transcript=hg002_chrY_paternal_233.1;source_transcript_name=hg002_chrY_paternal_233.1;source_gene=hg002_chrY_paternal_233;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_233;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_233.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_233.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_233.1,hg002_chrY_paternal_233.1;transcript_id=HG003_chrY_T0000412;gene_id=HG003_chrY_G0000159;Parent=HG003_chrY_T0000412;transcript_name=hg002_chrY_paternal_233.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000412:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9725369	9725527	.	-	.	source_transcript=hg002_chrY_paternal_233.1;source_transcript_name=hg002_chrY_paternal_233.1;source_gene=hg002_chrY_paternal_233;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_233;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_233.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_233.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_233.1,hg002_chrY_paternal_233.1;transcript_id=HG003_chrY_T0000412;gene_id=HG003_chrY_G0000159;Parent=HG003_chrY_T0000412;transcript_name=hg002_chrY_paternal_233.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000412:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9725528	9727021	.	-	.	source_transcript=hg002_chrY_paternal_233.1;source_transcript_name=hg002_chrY_paternal_233.1;source_gene=hg002_chrY_paternal_233;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_233;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_233.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_233.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_233.1,hg002_chrY_paternal_233.1;transcript_id=HG003_chrY_T0000412;gene_id=HG003_chrY_G0000159;Parent=HG003_chrY_T0000412;transcript_name=hg002_chrY_paternal_233.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000412:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9727022	9727167	.	-	.	source_transcript=hg002_chrY_paternal_233.1;source_transcript_name=hg002_chrY_paternal_233.1;source_gene=hg002_chrY_paternal_233;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_233;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_233.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_233.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_233.1,hg002_chrY_paternal_233.1;transcript_id=HG003_chrY_T0000412;gene_id=HG003_chrY_G0000159;Parent=HG003_chrY_T0000412;transcript_name=hg002_chrY_paternal_233.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000412:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9727168	9727253	.	-	.	source_transcript=hg002_chrY_paternal_233.1;source_transcript_name=hg002_chrY_paternal_233.1;source_gene=hg002_chrY_paternal_233;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_233;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_233.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_233.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_233.1,hg002_chrY_paternal_233.1;transcript_id=HG003_chrY_T0000412;gene_id=HG003_chrY_G0000159;Parent=HG003_chrY_T0000412;transcript_name=hg002_chrY_paternal_233.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000412:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9727254	9727444	.	-	.	source_transcript=hg002_chrY_paternal_233.1;source_transcript_name=hg002_chrY_paternal_233.1;source_gene=hg002_chrY_paternal_233;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_233;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_233.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_233.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_233.1,hg002_chrY_paternal_233.1;transcript_id=HG003_chrY_T0000412;gene_id=HG003_chrY_G0000159;Parent=HG003_chrY_T0000412;transcript_name=hg002_chrY_paternal_233.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000412:3;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9729968	9732765	.	+	.	source_gene_common_name=TSPY10;source_gene=hg002_chrY_paternal_234;alternative_source_transcripts=hg002_chrY_paternal_234.1,hg002_chrY_paternal_234.1;gene_id=HG003_chrY_G0000160;gene_biotype=protein_coding;gene_name=TSPY10;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000160;Name=TSPY10
HG003_chrY	CAT	transcript	9729968	9732765	100	+	.	source_transcript=hg002_chrY_paternal_234.1;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.1,hg002_chrY_paternal_234.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000413;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_G0000160;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=HG003_chrY_T0000413;Name=TSPY10
HG003_chrY	CAT	exon	9729968	9730499	.	+	.	source_transcript=hg002_chrY_paternal_234.1;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.1,hg002_chrY_paternal_234.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000413;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000413;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000413:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9730014	9730499	.	+	0	source_transcript=hg002_chrY_paternal_234.1;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.1,hg002_chrY_paternal_234.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000413;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000413;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000413:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9730014	9730016	.	+	0	source_transcript=hg002_chrY_paternal_234.1;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.1,hg002_chrY_paternal_234.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000413;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000413;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000413;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9730500	9731106	.	+	.	source_transcript=hg002_chrY_paternal_234.1;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.1,hg002_chrY_paternal_234.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000413;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000413;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000413:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9731107	9731184	.	+	.	source_transcript=hg002_chrY_paternal_234.1;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.1,hg002_chrY_paternal_234.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000413;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000413;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000413:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9731107	9731184	.	+	0	source_transcript=hg002_chrY_paternal_234.1;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.1,hg002_chrY_paternal_234.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000413;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000413;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000413:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9731185	9731312	.	+	.	source_transcript=hg002_chrY_paternal_234.1;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.1,hg002_chrY_paternal_234.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000413;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000413;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000413:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9731313	9731424	.	+	.	source_transcript=hg002_chrY_paternal_234.1;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.1,hg002_chrY_paternal_234.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000413;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000413;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000413:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9731313	9731424	.	+	0	source_transcript=hg002_chrY_paternal_234.1;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.1,hg002_chrY_paternal_234.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000413;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000413;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000413:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9731425	9731525	.	+	.	source_transcript=hg002_chrY_paternal_234.1;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.1,hg002_chrY_paternal_234.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000413;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000413;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000413:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9731526	9731671	.	+	.	source_transcript=hg002_chrY_paternal_234.1;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.1,hg002_chrY_paternal_234.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000413;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000413;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000413:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9731526	9731671	.	+	2	source_transcript=hg002_chrY_paternal_234.1;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.1,hg002_chrY_paternal_234.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000413;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000413;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000413:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9731672	9731777	.	+	.	source_transcript=hg002_chrY_paternal_234.1;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.1,hg002_chrY_paternal_234.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000413;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000413;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000413:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9731778	9731859	.	+	.	source_transcript=hg002_chrY_paternal_234.1;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.1,hg002_chrY_paternal_234.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000413;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000413;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000413:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9731778	9731859	.	+	0	source_transcript=hg002_chrY_paternal_234.1;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.1,hg002_chrY_paternal_234.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000413;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000413;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000413:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9731860	9732553	.	+	.	source_transcript=hg002_chrY_paternal_234.1;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.1,hg002_chrY_paternal_234.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000413;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000413;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000413:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9732554	9732765	.	+	.	source_transcript=hg002_chrY_paternal_234.1;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.1,hg002_chrY_paternal_234.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000413;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000413;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000413:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9732554	9732576	.	+	2	source_transcript=hg002_chrY_paternal_234.1;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.1,hg002_chrY_paternal_234.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000413;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000413;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000413:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9732574	9732576	.	+	0	source_transcript=hg002_chrY_paternal_234.1;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.1,hg002_chrY_paternal_234.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000413;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000413;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000413;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9729968	9732765	100	+	.	source_transcript=hg002_chrY_paternal_234.2;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.2,hg002_chrY_paternal_234.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000414;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_G0000160;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=HG003_chrY_T0000414;Name=TSPY10
HG003_chrY	CAT	exon	9729968	9730499	.	+	.	source_transcript=hg002_chrY_paternal_234.2;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.2,hg002_chrY_paternal_234.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000414;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000414;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000414:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9730014	9730499	.	+	0	source_transcript=hg002_chrY_paternal_234.2;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.2,hg002_chrY_paternal_234.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000414;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000414;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000414:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9730014	9730016	.	+	0	source_transcript=hg002_chrY_paternal_234.2;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.2,hg002_chrY_paternal_234.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000414;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000414;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000414;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9730500	9731106	.	+	.	source_transcript=hg002_chrY_paternal_234.2;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.2,hg002_chrY_paternal_234.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000414;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000414;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000414:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9731107	9731184	.	+	.	source_transcript=hg002_chrY_paternal_234.2;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.2,hg002_chrY_paternal_234.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000414;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000414;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000414:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9731107	9731184	.	+	0	source_transcript=hg002_chrY_paternal_234.2;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.2,hg002_chrY_paternal_234.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000414;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000414;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000414:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9731185	9731312	.	+	.	source_transcript=hg002_chrY_paternal_234.2;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.2,hg002_chrY_paternal_234.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000414;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000414;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000414:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9731313	9731424	.	+	.	source_transcript=hg002_chrY_paternal_234.2;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.2,hg002_chrY_paternal_234.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000414;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000414;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000414:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9731313	9731424	.	+	0	source_transcript=hg002_chrY_paternal_234.2;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.2,hg002_chrY_paternal_234.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000414;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000414;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000414:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9731425	9731525	.	+	.	source_transcript=hg002_chrY_paternal_234.2;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.2,hg002_chrY_paternal_234.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000414;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000414;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000414:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9731526	9731671	.	+	.	source_transcript=hg002_chrY_paternal_234.2;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.2,hg002_chrY_paternal_234.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000414;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000414;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000414:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9731526	9731671	.	+	2	source_transcript=hg002_chrY_paternal_234.2;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.2,hg002_chrY_paternal_234.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000414;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000414;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000414:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9731672	9731766	.	+	.	source_transcript=hg002_chrY_paternal_234.2;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.2,hg002_chrY_paternal_234.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000414;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000414;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000414:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9731767	9731859	.	+	.	source_transcript=hg002_chrY_paternal_234.2;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.2,hg002_chrY_paternal_234.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000414;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000414;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000414:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9731767	9731829	.	+	0	source_transcript=hg002_chrY_paternal_234.2;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.2,hg002_chrY_paternal_234.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000414;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000414;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000414:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9731827	9731829	.	+	0	source_transcript=hg002_chrY_paternal_234.2;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.2,hg002_chrY_paternal_234.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000414;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000414;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000414;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9731860	9732553	.	+	.	source_transcript=hg002_chrY_paternal_234.2;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.2,hg002_chrY_paternal_234.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000414;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000414;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000414:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9732554	9732765	.	+	.	source_transcript=hg002_chrY_paternal_234.2;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.2,hg002_chrY_paternal_234.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000414;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000414;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000414:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9729968	9732765	100	+	.	source_transcript=hg002_chrY_paternal_234.3;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.3,hg002_chrY_paternal_234.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000415;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_G0000160;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=HG003_chrY_T0000415;Name=TSPY10
HG003_chrY	CAT	exon	9729968	9730499	.	+	.	source_transcript=hg002_chrY_paternal_234.3;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.3,hg002_chrY_paternal_234.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000415;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000415;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000415:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9730014	9730499	.	+	0	source_transcript=hg002_chrY_paternal_234.3;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.3,hg002_chrY_paternal_234.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000415;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000415;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000415:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9730014	9730016	.	+	0	source_transcript=hg002_chrY_paternal_234.3;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.3,hg002_chrY_paternal_234.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000415;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000415;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000415;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9730500	9731106	.	+	.	source_transcript=hg002_chrY_paternal_234.3;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.3,hg002_chrY_paternal_234.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000415;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000415;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000415:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9731107	9731184	.	+	.	source_transcript=hg002_chrY_paternal_234.3;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.3,hg002_chrY_paternal_234.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000415;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000415;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000415:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9731107	9731184	.	+	0	source_transcript=hg002_chrY_paternal_234.3;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.3,hg002_chrY_paternal_234.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000415;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000415;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000415:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9731185	9731312	.	+	.	source_transcript=hg002_chrY_paternal_234.3;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.3,hg002_chrY_paternal_234.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000415;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000415;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000415:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9731313	9731424	.	+	.	source_transcript=hg002_chrY_paternal_234.3;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.3,hg002_chrY_paternal_234.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000415;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000415;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000415:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9731313	9731424	.	+	0	source_transcript=hg002_chrY_paternal_234.3;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.3,hg002_chrY_paternal_234.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000415;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000415;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000415:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9731425	9731532	.	+	.	source_transcript=hg002_chrY_paternal_234.3;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.3,hg002_chrY_paternal_234.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000415;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000415;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000415:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9731533	9731671	.	+	.	source_transcript=hg002_chrY_paternal_234.3;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.3,hg002_chrY_paternal_234.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000415;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000415;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000415:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9731533	9731671	.	+	2	source_transcript=hg002_chrY_paternal_234.3;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.3,hg002_chrY_paternal_234.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000415;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000415;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000415:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9731672	9731777	.	+	.	source_transcript=hg002_chrY_paternal_234.3;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.3,hg002_chrY_paternal_234.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000415;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000415;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000415:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9731778	9731859	.	+	.	source_transcript=hg002_chrY_paternal_234.3;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.3,hg002_chrY_paternal_234.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000415;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000415;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000415:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9731778	9731829	.	+	1	source_transcript=hg002_chrY_paternal_234.3;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.3,hg002_chrY_paternal_234.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000415;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000415;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000415:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9731827	9731829	.	+	0	source_transcript=hg002_chrY_paternal_234.3;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.3,hg002_chrY_paternal_234.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000415;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000415;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000415;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9731860	9732553	.	+	.	source_transcript=hg002_chrY_paternal_234.3;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.3,hg002_chrY_paternal_234.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000415;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000415;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000415:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9732554	9732765	.	+	.	source_transcript=hg002_chrY_paternal_234.3;source_transcript_name=hg002_chrY_paternal_234.4;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_234.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.3,hg002_chrY_paternal_234.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000415;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000415;transcript_name=hg002_chrY_paternal_234.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000415:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9729968	9732765	1000	+	.	source_transcript=hg002_chrY_paternal_234.4;source_transcript_name=hg002_chrY_paternal_234.1;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_234.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.4,hg002_chrY_paternal_234.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000416;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_G0000160;transcript_name=hg002_chrY_paternal_234.1;gene_name=TSPY10;ID=HG003_chrY_T0000416;Name=TSPY10
HG003_chrY	CAT	exon	9729968	9730499	.	+	.	source_transcript=hg002_chrY_paternal_234.4;source_transcript_name=hg002_chrY_paternal_234.1;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_234.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.4,hg002_chrY_paternal_234.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000416;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000416;transcript_name=hg002_chrY_paternal_234.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000416:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9730500	9731106	.	+	.	source_transcript=hg002_chrY_paternal_234.4;source_transcript_name=hg002_chrY_paternal_234.1;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_234.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.4,hg002_chrY_paternal_234.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000416;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000416;transcript_name=hg002_chrY_paternal_234.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000416:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9731107	9731184	.	+	.	source_transcript=hg002_chrY_paternal_234.4;source_transcript_name=hg002_chrY_paternal_234.1;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_234.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.4,hg002_chrY_paternal_234.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000416;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000416;transcript_name=hg002_chrY_paternal_234.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000416:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9731185	9731312	.	+	.	source_transcript=hg002_chrY_paternal_234.4;source_transcript_name=hg002_chrY_paternal_234.1;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_234.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.4,hg002_chrY_paternal_234.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000416;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000416;transcript_name=hg002_chrY_paternal_234.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000416:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9731313	9731424	.	+	.	source_transcript=hg002_chrY_paternal_234.4;source_transcript_name=hg002_chrY_paternal_234.1;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_234.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.4,hg002_chrY_paternal_234.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000416;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000416;transcript_name=hg002_chrY_paternal_234.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000416:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9731425	9731532	.	+	.	source_transcript=hg002_chrY_paternal_234.4;source_transcript_name=hg002_chrY_paternal_234.1;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_234.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.4,hg002_chrY_paternal_234.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000416;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000416;transcript_name=hg002_chrY_paternal_234.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000416:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9731533	9731671	.	+	.	source_transcript=hg002_chrY_paternal_234.4;source_transcript_name=hg002_chrY_paternal_234.1;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_234.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.4,hg002_chrY_paternal_234.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000416;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000416;transcript_name=hg002_chrY_paternal_234.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000416:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9731672	9731766	.	+	.	source_transcript=hg002_chrY_paternal_234.4;source_transcript_name=hg002_chrY_paternal_234.1;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_234.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.4,hg002_chrY_paternal_234.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000416;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000416;transcript_name=hg002_chrY_paternal_234.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000416:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9731767	9731859	.	+	.	source_transcript=hg002_chrY_paternal_234.4;source_transcript_name=hg002_chrY_paternal_234.1;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_234.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.4,hg002_chrY_paternal_234.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000416;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000416;transcript_name=hg002_chrY_paternal_234.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000416:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9731860	9732553	.	+	.	source_transcript=hg002_chrY_paternal_234.4;source_transcript_name=hg002_chrY_paternal_234.1;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_234.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.4,hg002_chrY_paternal_234.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000416;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000416;transcript_name=hg002_chrY_paternal_234.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000416:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9732554	9732765	.	+	.	source_transcript=hg002_chrY_paternal_234.4;source_transcript_name=hg002_chrY_paternal_234.1;source_gene=hg002_chrY_paternal_234;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_234;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_234.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_234.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_234.4,hg002_chrY_paternal_234.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000416;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000416;transcript_name=hg002_chrY_paternal_234.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000416:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9742059	9747752	.	-	.	source_gene_common_name=FAM197Y2;source_gene=hg002_chrY_paternal_235;alternative_source_transcripts=hg002_chrY_paternal_235.1,hg002_chrY_paternal_235.1;gene_id=HG003_chrY_G0000161;gene_biotype=lncRNA;gene_name=FAM197Y2;gene_sources=liftoff;ID=HG003_chrY_G0000161;Name=FAM197Y2
HG003_chrY	CAT	transcript	9742059	9747752	1000	-	.	source_transcript=hg002_chrY_paternal_235.1;source_transcript_name=hg002_chrY_paternal_235.1;source_gene=hg002_chrY_paternal_235;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_235;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_235.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_235.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_235.1,hg002_chrY_paternal_235.1;transcript_id=HG003_chrY_T0000417;gene_id=HG003_chrY_G0000161;Parent=HG003_chrY_G0000161;transcript_name=hg002_chrY_paternal_235.1;gene_name=FAM197Y2;ID=HG003_chrY_T0000417;Name=FAM197Y2
HG003_chrY	CAT	exon	9742059	9742118	.	-	.	source_transcript=hg002_chrY_paternal_235.1;source_transcript_name=hg002_chrY_paternal_235.1;source_gene=hg002_chrY_paternal_235;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_235;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_235.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_235.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_235.1,hg002_chrY_paternal_235.1;transcript_id=HG003_chrY_T0000417;gene_id=HG003_chrY_G0000161;Parent=HG003_chrY_T0000417;transcript_name=hg002_chrY_paternal_235.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000417:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9742119	9745668	.	-	.	source_transcript=hg002_chrY_paternal_235.1;source_transcript_name=hg002_chrY_paternal_235.1;source_gene=hg002_chrY_paternal_235;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_235;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_235.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_235.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_235.1,hg002_chrY_paternal_235.1;transcript_id=HG003_chrY_T0000417;gene_id=HG003_chrY_G0000161;Parent=HG003_chrY_T0000417;transcript_name=hg002_chrY_paternal_235.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000417:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9745669	9745827	.	-	.	source_transcript=hg002_chrY_paternal_235.1;source_transcript_name=hg002_chrY_paternal_235.1;source_gene=hg002_chrY_paternal_235;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_235;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_235.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_235.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_235.1,hg002_chrY_paternal_235.1;transcript_id=HG003_chrY_T0000417;gene_id=HG003_chrY_G0000161;Parent=HG003_chrY_T0000417;transcript_name=hg002_chrY_paternal_235.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000417:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9745828	9747329	.	-	.	source_transcript=hg002_chrY_paternal_235.1;source_transcript_name=hg002_chrY_paternal_235.1;source_gene=hg002_chrY_paternal_235;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_235;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_235.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_235.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_235.1,hg002_chrY_paternal_235.1;transcript_id=HG003_chrY_T0000417;gene_id=HG003_chrY_G0000161;Parent=HG003_chrY_T0000417;transcript_name=hg002_chrY_paternal_235.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000417:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9747330	9747475	.	-	.	source_transcript=hg002_chrY_paternal_235.1;source_transcript_name=hg002_chrY_paternal_235.1;source_gene=hg002_chrY_paternal_235;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_235;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_235.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_235.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_235.1,hg002_chrY_paternal_235.1;transcript_id=HG003_chrY_T0000417;gene_id=HG003_chrY_G0000161;Parent=HG003_chrY_T0000417;transcript_name=hg002_chrY_paternal_235.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000417:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9747476	9747561	.	-	.	source_transcript=hg002_chrY_paternal_235.1;source_transcript_name=hg002_chrY_paternal_235.1;source_gene=hg002_chrY_paternal_235;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_235;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_235.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_235.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_235.1,hg002_chrY_paternal_235.1;transcript_id=HG003_chrY_T0000417;gene_id=HG003_chrY_G0000161;Parent=HG003_chrY_T0000417;transcript_name=hg002_chrY_paternal_235.1;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000417:2;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9747562	9747752	.	-	.	source_transcript=hg002_chrY_paternal_235.1;source_transcript_name=hg002_chrY_paternal_235.1;source_gene=hg002_chrY_paternal_235;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_235;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_235.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_235.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_235.1,hg002_chrY_paternal_235.1;transcript_id=HG003_chrY_T0000417;gene_id=HG003_chrY_G0000161;Parent=HG003_chrY_T0000417;transcript_name=hg002_chrY_paternal_235.1;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000417:3;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9750276	9753072	.	+	.	source_gene_common_name=TSPY10P;source_gene=hg002_chrY_paternal_236;alternative_source_transcripts=hg002_chrY_paternal_236.1,hg002_chrY_paternal_236.1;gene_id=HG003_chrY_G0000162;gene_biotype=pseudogene;gene_name=TSPY10P;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000162;Name=TSPY10P
HG003_chrY	CAT	transcript	9750276	9753072	1000	+	.	source_transcript=hg002_chrY_paternal_236.1;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.1,hg002_chrY_paternal_236.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000418;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_G0000162;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=HG003_chrY_T0000418;Name=TSPY10P
HG003_chrY	CAT	exon	9750276	9750807	.	+	.	source_transcript=hg002_chrY_paternal_236.1;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.1,hg002_chrY_paternal_236.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000418;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000418;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:HG003_chrY_T0000418:0;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9750322	9750807	.	+	0	source_transcript=hg002_chrY_paternal_236.1;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.1,hg002_chrY_paternal_236.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000418;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000418;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=CDS:HG003_chrY_T0000418:0;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9750322	9750324	.	+	0	source_transcript=hg002_chrY_paternal_236.1;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.1,hg002_chrY_paternal_236.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000418;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000418;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=start_codon:HG003_chrY_T0000418;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9750808	9751414	.	+	.	source_transcript=hg002_chrY_paternal_236.1;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.1,hg002_chrY_paternal_236.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000418;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000418;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=intron:HG003_chrY_T0000418:0;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9751415	9751492	.	+	.	source_transcript=hg002_chrY_paternal_236.1;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.1,hg002_chrY_paternal_236.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000418;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000418;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:HG003_chrY_T0000418:1;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9751415	9751492	.	+	0	source_transcript=hg002_chrY_paternal_236.1;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.1,hg002_chrY_paternal_236.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000418;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000418;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=CDS:HG003_chrY_T0000418:1;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9751493	9751620	.	+	.	source_transcript=hg002_chrY_paternal_236.1;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.1,hg002_chrY_paternal_236.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000418;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000418;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=intron:HG003_chrY_T0000418:1;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9751621	9751732	.	+	.	source_transcript=hg002_chrY_paternal_236.1;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.1,hg002_chrY_paternal_236.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000418;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000418;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:HG003_chrY_T0000418:2;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9751621	9751732	.	+	0	source_transcript=hg002_chrY_paternal_236.1;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.1,hg002_chrY_paternal_236.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000418;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000418;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=CDS:HG003_chrY_T0000418:2;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9751733	9751833	.	+	.	source_transcript=hg002_chrY_paternal_236.1;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.1,hg002_chrY_paternal_236.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000418;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000418;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=intron:HG003_chrY_T0000418:2;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9751834	9751979	.	+	.	source_transcript=hg002_chrY_paternal_236.1;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.1,hg002_chrY_paternal_236.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000418;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000418;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:HG003_chrY_T0000418:3;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9751834	9751868	.	+	2	source_transcript=hg002_chrY_paternal_236.1;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.1,hg002_chrY_paternal_236.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000418;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000418;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=CDS:HG003_chrY_T0000418:3;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9751866	9751868	.	+	0	source_transcript=hg002_chrY_paternal_236.1;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.1,hg002_chrY_paternal_236.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000418;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000418;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=stop_codon:HG003_chrY_T0000418;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9751980	9752085	.	+	.	source_transcript=hg002_chrY_paternal_236.1;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.1,hg002_chrY_paternal_236.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000418;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000418;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=intron:HG003_chrY_T0000418:3;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9752086	9752167	.	+	.	source_transcript=hg002_chrY_paternal_236.1;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.1,hg002_chrY_paternal_236.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000418;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000418;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:HG003_chrY_T0000418:4;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9752168	9752861	.	+	.	source_transcript=hg002_chrY_paternal_236.1;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.1,hg002_chrY_paternal_236.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000418;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000418;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=intron:HG003_chrY_T0000418:4;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9752862	9753072	.	+	.	source_transcript=hg002_chrY_paternal_236.1;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.1,hg002_chrY_paternal_236.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000418;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000418;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:HG003_chrY_T0000418:5;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9750276	9753072	1000	+	.	source_transcript=hg002_chrY_paternal_236.2;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.2,hg002_chrY_paternal_236.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000419;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_G0000162;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=HG003_chrY_T0000419;Name=TSPY10P
HG003_chrY	CAT	exon	9750276	9750807	.	+	.	source_transcript=hg002_chrY_paternal_236.2;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.2,hg002_chrY_paternal_236.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000419;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000419;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:HG003_chrY_T0000419:0;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9750322	9750807	.	+	0	source_transcript=hg002_chrY_paternal_236.2;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.2,hg002_chrY_paternal_236.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000419;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000419;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=CDS:HG003_chrY_T0000419:0;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9750322	9750324	.	+	0	source_transcript=hg002_chrY_paternal_236.2;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.2,hg002_chrY_paternal_236.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000419;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000419;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=start_codon:HG003_chrY_T0000419;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9750808	9751414	.	+	.	source_transcript=hg002_chrY_paternal_236.2;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.2,hg002_chrY_paternal_236.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000419;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000419;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=intron:HG003_chrY_T0000419:0;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9751415	9751492	.	+	.	source_transcript=hg002_chrY_paternal_236.2;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.2,hg002_chrY_paternal_236.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000419;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000419;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:HG003_chrY_T0000419:1;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9751415	9751492	.	+	0	source_transcript=hg002_chrY_paternal_236.2;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.2,hg002_chrY_paternal_236.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000419;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000419;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=CDS:HG003_chrY_T0000419:1;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9751493	9751620	.	+	.	source_transcript=hg002_chrY_paternal_236.2;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.2,hg002_chrY_paternal_236.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000419;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000419;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=intron:HG003_chrY_T0000419:1;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9751621	9751732	.	+	.	source_transcript=hg002_chrY_paternal_236.2;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.2,hg002_chrY_paternal_236.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000419;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000419;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:HG003_chrY_T0000419:2;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9751621	9751732	.	+	0	source_transcript=hg002_chrY_paternal_236.2;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.2,hg002_chrY_paternal_236.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000419;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000419;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=CDS:HG003_chrY_T0000419:2;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9751733	9751833	.	+	.	source_transcript=hg002_chrY_paternal_236.2;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.2,hg002_chrY_paternal_236.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000419;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000419;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=intron:HG003_chrY_T0000419:2;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9751834	9751979	.	+	.	source_transcript=hg002_chrY_paternal_236.2;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.2,hg002_chrY_paternal_236.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000419;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000419;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:HG003_chrY_T0000419:3;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9751834	9751868	.	+	2	source_transcript=hg002_chrY_paternal_236.2;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.2,hg002_chrY_paternal_236.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000419;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000419;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=CDS:HG003_chrY_T0000419:3;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9751866	9751868	.	+	0	source_transcript=hg002_chrY_paternal_236.2;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.2,hg002_chrY_paternal_236.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000419;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000419;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=stop_codon:HG003_chrY_T0000419;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9751980	9752074	.	+	.	source_transcript=hg002_chrY_paternal_236.2;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.2,hg002_chrY_paternal_236.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000419;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000419;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=intron:HG003_chrY_T0000419:3;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9752075	9752167	.	+	.	source_transcript=hg002_chrY_paternal_236.2;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.2,hg002_chrY_paternal_236.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000419;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000419;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:HG003_chrY_T0000419:4;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9752168	9752861	.	+	.	source_transcript=hg002_chrY_paternal_236.2;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.2,hg002_chrY_paternal_236.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000419;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000419;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=intron:HG003_chrY_T0000419:4;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9752862	9753072	.	+	.	source_transcript=hg002_chrY_paternal_236.2;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.2,hg002_chrY_paternal_236.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000419;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000419;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:HG003_chrY_T0000419:5;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9750276	9753072	1000	+	.	source_transcript=hg002_chrY_paternal_236.3;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.3,hg002_chrY_paternal_236.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000420;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_G0000162;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=HG003_chrY_T0000420;Name=TSPY10P
HG003_chrY	CAT	exon	9750276	9750807	.	+	.	source_transcript=hg002_chrY_paternal_236.3;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.3,hg002_chrY_paternal_236.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000420;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000420;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:HG003_chrY_T0000420:0;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9750322	9750807	.	+	0	source_transcript=hg002_chrY_paternal_236.3;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.3,hg002_chrY_paternal_236.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000420;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000420;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=CDS:HG003_chrY_T0000420:0;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9750322	9750324	.	+	0	source_transcript=hg002_chrY_paternal_236.3;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.3,hg002_chrY_paternal_236.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000420;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000420;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=start_codon:HG003_chrY_T0000420;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9750808	9751414	.	+	.	source_transcript=hg002_chrY_paternal_236.3;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.3,hg002_chrY_paternal_236.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000420;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000420;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=intron:HG003_chrY_T0000420:0;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9751415	9751492	.	+	.	source_transcript=hg002_chrY_paternal_236.3;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.3,hg002_chrY_paternal_236.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000420;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000420;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:HG003_chrY_T0000420:1;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9751415	9751492	.	+	0	source_transcript=hg002_chrY_paternal_236.3;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.3,hg002_chrY_paternal_236.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000420;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000420;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=CDS:HG003_chrY_T0000420:1;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9751493	9751620	.	+	.	source_transcript=hg002_chrY_paternal_236.3;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.3,hg002_chrY_paternal_236.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000420;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000420;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=intron:HG003_chrY_T0000420:1;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9751621	9751732	.	+	.	source_transcript=hg002_chrY_paternal_236.3;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.3,hg002_chrY_paternal_236.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000420;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000420;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:HG003_chrY_T0000420:2;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9751621	9751732	.	+	0	source_transcript=hg002_chrY_paternal_236.3;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.3,hg002_chrY_paternal_236.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000420;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000420;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=CDS:HG003_chrY_T0000420:2;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9751733	9751840	.	+	.	source_transcript=hg002_chrY_paternal_236.3;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.3,hg002_chrY_paternal_236.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000420;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000420;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=intron:HG003_chrY_T0000420:2;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9751841	9751979	.	+	.	source_transcript=hg002_chrY_paternal_236.3;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.3,hg002_chrY_paternal_236.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000420;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000420;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:HG003_chrY_T0000420:3;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9751841	9751979	.	+	2	source_transcript=hg002_chrY_paternal_236.3;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.3,hg002_chrY_paternal_236.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000420;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000420;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=CDS:HG003_chrY_T0000420:3;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9751980	9752085	.	+	.	source_transcript=hg002_chrY_paternal_236.3;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.3,hg002_chrY_paternal_236.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000420;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000420;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=intron:HG003_chrY_T0000420:3;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9752086	9752167	.	+	.	source_transcript=hg002_chrY_paternal_236.3;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.3,hg002_chrY_paternal_236.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000420;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000420;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:HG003_chrY_T0000420:4;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9752086	9752137	.	+	1	source_transcript=hg002_chrY_paternal_236.3;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.3,hg002_chrY_paternal_236.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000420;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000420;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=CDS:HG003_chrY_T0000420:4;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9752135	9752137	.	+	0	source_transcript=hg002_chrY_paternal_236.3;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.3,hg002_chrY_paternal_236.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000420;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000420;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=stop_codon:HG003_chrY_T0000420;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9752168	9752861	.	+	.	source_transcript=hg002_chrY_paternal_236.3;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.3,hg002_chrY_paternal_236.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000420;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000420;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=intron:HG003_chrY_T0000420:4;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9752862	9753072	.	+	.	source_transcript=hg002_chrY_paternal_236.3;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.3,hg002_chrY_paternal_236.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000420;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000420;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:HG003_chrY_T0000420:5;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9750276	9753072	1000	+	.	source_transcript=hg002_chrY_paternal_236.4;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.4,hg002_chrY_paternal_236.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000421;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_G0000162;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=HG003_chrY_T0000421;Name=TSPY10P
HG003_chrY	CAT	exon	9750276	9750807	.	+	.	source_transcript=hg002_chrY_paternal_236.4;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.4,hg002_chrY_paternal_236.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000421;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000421;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:HG003_chrY_T0000421:0;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9750808	9751414	.	+	.	source_transcript=hg002_chrY_paternal_236.4;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.4,hg002_chrY_paternal_236.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000421;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000421;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=intron:HG003_chrY_T0000421:0;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9751415	9751492	.	+	.	source_transcript=hg002_chrY_paternal_236.4;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.4,hg002_chrY_paternal_236.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000421;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000421;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:HG003_chrY_T0000421:1;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9751493	9751620	.	+	.	source_transcript=hg002_chrY_paternal_236.4;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.4,hg002_chrY_paternal_236.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000421;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000421;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=intron:HG003_chrY_T0000421:1;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9751621	9751732	.	+	.	source_transcript=hg002_chrY_paternal_236.4;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.4,hg002_chrY_paternal_236.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000421;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000421;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:HG003_chrY_T0000421:2;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9751733	9751840	.	+	.	source_transcript=hg002_chrY_paternal_236.4;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.4,hg002_chrY_paternal_236.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000421;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000421;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=intron:HG003_chrY_T0000421:2;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9751841	9751979	.	+	.	source_transcript=hg002_chrY_paternal_236.4;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.4,hg002_chrY_paternal_236.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000421;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000421;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:HG003_chrY_T0000421:3;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9751980	9752074	.	+	.	source_transcript=hg002_chrY_paternal_236.4;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.4,hg002_chrY_paternal_236.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000421;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000421;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=intron:HG003_chrY_T0000421:3;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9752075	9752167	.	+	.	source_transcript=hg002_chrY_paternal_236.4;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.4,hg002_chrY_paternal_236.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000421;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000421;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:HG003_chrY_T0000421:4;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9752168	9752861	.	+	.	source_transcript=hg002_chrY_paternal_236.4;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.4,hg002_chrY_paternal_236.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000421;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000421;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=intron:HG003_chrY_T0000421:4;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9752862	9753072	.	+	.	source_transcript=hg002_chrY_paternal_236.4;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_236.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.4,hg002_chrY_paternal_236.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000421;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000421;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:HG003_chrY_T0000421:5;Name=TSPY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9762390	9767994	.	-	.	source_gene_common_name=FAM197Y3;source_gene=hg002_chrY_paternal_237;alternative_source_transcripts=hg002_chrY_paternal_237.1,hg002_chrY_paternal_237.1;gene_id=HG003_chrY_G0000163;gene_biotype=lncRNA;gene_name=FAM197Y3;gene_sources=liftoff;ID=HG003_chrY_G0000163;Name=FAM197Y3
HG003_chrY	CAT	transcript	9762390	9767994	1000	-	.	source_transcript=hg002_chrY_paternal_237.1;source_transcript_name=hg002_chrY_paternal_237.1;source_gene=hg002_chrY_paternal_237;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_237;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_237.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_237.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_237.1,hg002_chrY_paternal_237.1;transcript_id=HG003_chrY_T0000422;gene_id=HG003_chrY_G0000163;Parent=HG003_chrY_G0000163;transcript_name=hg002_chrY_paternal_237.1;gene_name=FAM197Y3;ID=HG003_chrY_T0000422;Name=FAM197Y3
HG003_chrY	CAT	exon	9762390	9762449	.	-	.	source_transcript=hg002_chrY_paternal_237.1;source_transcript_name=hg002_chrY_paternal_237.1;source_gene=hg002_chrY_paternal_237;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_237;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_237.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_237.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_237.1,hg002_chrY_paternal_237.1;transcript_id=HG003_chrY_T0000422;gene_id=HG003_chrY_G0000163;Parent=HG003_chrY_T0000422;transcript_name=hg002_chrY_paternal_237.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000422:0;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9762450	9765998	.	-	.	source_transcript=hg002_chrY_paternal_237.1;source_transcript_name=hg002_chrY_paternal_237.1;source_gene=hg002_chrY_paternal_237;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_237;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_237.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_237.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_237.1,hg002_chrY_paternal_237.1;transcript_id=HG003_chrY_T0000422;gene_id=HG003_chrY_G0000163;Parent=HG003_chrY_T0000422;transcript_name=hg002_chrY_paternal_237.1;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000422:0;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9765999	9766157	.	-	.	source_transcript=hg002_chrY_paternal_237.1;source_transcript_name=hg002_chrY_paternal_237.1;source_gene=hg002_chrY_paternal_237;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_237;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_237.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_237.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_237.1,hg002_chrY_paternal_237.1;transcript_id=HG003_chrY_T0000422;gene_id=HG003_chrY_G0000163;Parent=HG003_chrY_T0000422;transcript_name=hg002_chrY_paternal_237.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000422:1;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9766158	9767660	.	-	.	source_transcript=hg002_chrY_paternal_237.1;source_transcript_name=hg002_chrY_paternal_237.1;source_gene=hg002_chrY_paternal_237;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_237;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_237.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_237.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_237.1,hg002_chrY_paternal_237.1;transcript_id=HG003_chrY_T0000422;gene_id=HG003_chrY_G0000163;Parent=HG003_chrY_T0000422;transcript_name=hg002_chrY_paternal_237.1;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000422:1;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9767661	9767806	.	-	.	source_transcript=hg002_chrY_paternal_237.1;source_transcript_name=hg002_chrY_paternal_237.1;source_gene=hg002_chrY_paternal_237;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_237;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_237.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_237.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_237.1,hg002_chrY_paternal_237.1;transcript_id=HG003_chrY_T0000422;gene_id=HG003_chrY_G0000163;Parent=HG003_chrY_T0000422;transcript_name=hg002_chrY_paternal_237.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000422:2;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9767807	9767892	.	-	.	source_transcript=hg002_chrY_paternal_237.1;source_transcript_name=hg002_chrY_paternal_237.1;source_gene=hg002_chrY_paternal_237;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_237;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_237.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_237.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_237.1,hg002_chrY_paternal_237.1;transcript_id=HG003_chrY_T0000422;gene_id=HG003_chrY_G0000163;Parent=HG003_chrY_T0000422;transcript_name=hg002_chrY_paternal_237.1;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000422:2;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9767893	9767994	.	-	.	source_transcript=hg002_chrY_paternal_237.1;source_transcript_name=hg002_chrY_paternal_237.1;source_gene=hg002_chrY_paternal_237;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_237;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_237.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_237.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_237.1,hg002_chrY_paternal_237.1;transcript_id=HG003_chrY_T0000422;gene_id=HG003_chrY_G0000163;Parent=HG003_chrY_T0000422;transcript_name=hg002_chrY_paternal_237.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000422:3;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9770604	9773400	.	+	.	source_gene_common_name=TSPY10;source_gene=hg002_chrY_paternal_238;alternative_source_transcripts=hg002_chrY_paternal_238.1,hg002_chrY_paternal_238.1;gene_id=HG003_chrY_G0000164;gene_biotype=protein_coding;gene_name=TSPY10;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000164;Name=TSPY10
HG003_chrY	CAT	transcript	9770604	9773400	100	+	.	source_transcript=hg002_chrY_paternal_238.1;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.1,hg002_chrY_paternal_238.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000423;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_G0000164;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=HG003_chrY_T0000423;Name=TSPY10
HG003_chrY	CAT	exon	9770604	9771135	.	+	.	source_transcript=hg002_chrY_paternal_238.1;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.1,hg002_chrY_paternal_238.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000423;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000423;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000423:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9770650	9771135	.	+	0	source_transcript=hg002_chrY_paternal_238.1;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.1,hg002_chrY_paternal_238.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000423;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000423;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000423:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9770650	9770652	.	+	0	source_transcript=hg002_chrY_paternal_238.1;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.1,hg002_chrY_paternal_238.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000423;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000423;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000423;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9771136	9771742	.	+	.	source_transcript=hg002_chrY_paternal_238.1;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.1,hg002_chrY_paternal_238.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000423;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000423;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000423:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9771743	9771820	.	+	.	source_transcript=hg002_chrY_paternal_238.1;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.1,hg002_chrY_paternal_238.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000423;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000423;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000423:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9771743	9771820	.	+	0	source_transcript=hg002_chrY_paternal_238.1;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.1,hg002_chrY_paternal_238.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000423;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000423;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000423:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9771821	9771948	.	+	.	source_transcript=hg002_chrY_paternal_238.1;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.1,hg002_chrY_paternal_238.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000423;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000423;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000423:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9771949	9772060	.	+	.	source_transcript=hg002_chrY_paternal_238.1;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.1,hg002_chrY_paternal_238.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000423;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000423;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000423:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9771949	9772060	.	+	0	source_transcript=hg002_chrY_paternal_238.1;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.1,hg002_chrY_paternal_238.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000423;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000423;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000423:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9772061	9772161	.	+	.	source_transcript=hg002_chrY_paternal_238.1;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.1,hg002_chrY_paternal_238.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000423;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000423;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000423:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9772162	9772307	.	+	.	source_transcript=hg002_chrY_paternal_238.1;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.1,hg002_chrY_paternal_238.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000423;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000423;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000423:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9772162	9772307	.	+	2	source_transcript=hg002_chrY_paternal_238.1;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.1,hg002_chrY_paternal_238.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000423;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000423;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000423:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9772308	9772413	.	+	.	source_transcript=hg002_chrY_paternal_238.1;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.1,hg002_chrY_paternal_238.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000423;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000423;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000423:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9772414	9772495	.	+	.	source_transcript=hg002_chrY_paternal_238.1;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.1,hg002_chrY_paternal_238.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000423;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000423;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000423:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9772414	9772495	.	+	0	source_transcript=hg002_chrY_paternal_238.1;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.1,hg002_chrY_paternal_238.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000423;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000423;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000423:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9772496	9773189	.	+	.	source_transcript=hg002_chrY_paternal_238.1;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.1,hg002_chrY_paternal_238.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000423;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000423;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000423:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9773190	9773400	.	+	.	source_transcript=hg002_chrY_paternal_238.1;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.1,hg002_chrY_paternal_238.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000423;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000423;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000423:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9773190	9773212	.	+	2	source_transcript=hg002_chrY_paternal_238.1;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.1,hg002_chrY_paternal_238.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000423;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000423;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000423:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9773210	9773212	.	+	0	source_transcript=hg002_chrY_paternal_238.1;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.1,hg002_chrY_paternal_238.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000423;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000423;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000423;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9770604	9773400	100	+	.	source_transcript=hg002_chrY_paternal_238.2;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.2,hg002_chrY_paternal_238.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000424;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_G0000164;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=HG003_chrY_T0000424;Name=TSPY10
HG003_chrY	CAT	exon	9770604	9771135	.	+	.	source_transcript=hg002_chrY_paternal_238.2;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.2,hg002_chrY_paternal_238.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000424;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000424;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000424:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9770650	9771135	.	+	0	source_transcript=hg002_chrY_paternal_238.2;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.2,hg002_chrY_paternal_238.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000424;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000424;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000424:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9770650	9770652	.	+	0	source_transcript=hg002_chrY_paternal_238.2;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.2,hg002_chrY_paternal_238.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000424;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000424;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000424;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9771136	9771742	.	+	.	source_transcript=hg002_chrY_paternal_238.2;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.2,hg002_chrY_paternal_238.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000424;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000424;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000424:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9771743	9771820	.	+	.	source_transcript=hg002_chrY_paternal_238.2;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.2,hg002_chrY_paternal_238.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000424;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000424;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000424:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9771743	9771820	.	+	0	source_transcript=hg002_chrY_paternal_238.2;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.2,hg002_chrY_paternal_238.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000424;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000424;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000424:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9771821	9771948	.	+	.	source_transcript=hg002_chrY_paternal_238.2;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.2,hg002_chrY_paternal_238.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000424;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000424;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000424:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9771949	9772060	.	+	.	source_transcript=hg002_chrY_paternal_238.2;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.2,hg002_chrY_paternal_238.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000424;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000424;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000424:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9771949	9772060	.	+	0	source_transcript=hg002_chrY_paternal_238.2;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.2,hg002_chrY_paternal_238.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000424;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000424;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000424:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9772061	9772161	.	+	.	source_transcript=hg002_chrY_paternal_238.2;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.2,hg002_chrY_paternal_238.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000424;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000424;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000424:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9772162	9772307	.	+	.	source_transcript=hg002_chrY_paternal_238.2;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.2,hg002_chrY_paternal_238.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000424;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000424;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000424:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9772162	9772307	.	+	2	source_transcript=hg002_chrY_paternal_238.2;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.2,hg002_chrY_paternal_238.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000424;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000424;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000424:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9772308	9772402	.	+	.	source_transcript=hg002_chrY_paternal_238.2;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.2,hg002_chrY_paternal_238.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000424;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000424;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000424:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9772403	9772495	.	+	.	source_transcript=hg002_chrY_paternal_238.2;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.2,hg002_chrY_paternal_238.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000424;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000424;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000424:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9772403	9772465	.	+	0	source_transcript=hg002_chrY_paternal_238.2;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.2,hg002_chrY_paternal_238.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000424;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000424;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000424:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9772463	9772465	.	+	0	source_transcript=hg002_chrY_paternal_238.2;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.2,hg002_chrY_paternal_238.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000424;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000424;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000424;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9772496	9773189	.	+	.	source_transcript=hg002_chrY_paternal_238.2;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.2,hg002_chrY_paternal_238.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000424;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000424;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000424:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9773190	9773400	.	+	.	source_transcript=hg002_chrY_paternal_238.2;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.2,hg002_chrY_paternal_238.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000424;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000424;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000424:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9770604	9773400	100	+	.	source_transcript=hg002_chrY_paternal_238.3;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.3,hg002_chrY_paternal_238.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000425;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_G0000164;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=HG003_chrY_T0000425;Name=TSPY10
HG003_chrY	CAT	exon	9770604	9771135	.	+	.	source_transcript=hg002_chrY_paternal_238.3;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.3,hg002_chrY_paternal_238.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000425;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000425;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000425:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9770650	9771135	.	+	0	source_transcript=hg002_chrY_paternal_238.3;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.3,hg002_chrY_paternal_238.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000425;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000425;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000425:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9770650	9770652	.	+	0	source_transcript=hg002_chrY_paternal_238.3;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.3,hg002_chrY_paternal_238.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000425;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000425;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000425;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9771136	9771742	.	+	.	source_transcript=hg002_chrY_paternal_238.3;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.3,hg002_chrY_paternal_238.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000425;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000425;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000425:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9771743	9771820	.	+	.	source_transcript=hg002_chrY_paternal_238.3;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.3,hg002_chrY_paternal_238.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000425;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000425;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000425:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9771743	9771820	.	+	0	source_transcript=hg002_chrY_paternal_238.3;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.3,hg002_chrY_paternal_238.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000425;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000425;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000425:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9771821	9771948	.	+	.	source_transcript=hg002_chrY_paternal_238.3;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.3,hg002_chrY_paternal_238.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000425;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000425;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000425:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9771949	9772060	.	+	.	source_transcript=hg002_chrY_paternal_238.3;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.3,hg002_chrY_paternal_238.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000425;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000425;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000425:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9771949	9772060	.	+	0	source_transcript=hg002_chrY_paternal_238.3;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.3,hg002_chrY_paternal_238.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000425;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000425;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000425:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9772061	9772168	.	+	.	source_transcript=hg002_chrY_paternal_238.3;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.3,hg002_chrY_paternal_238.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000425;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000425;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000425:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9772169	9772307	.	+	.	source_transcript=hg002_chrY_paternal_238.3;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.3,hg002_chrY_paternal_238.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000425;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000425;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000425:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9772169	9772307	.	+	2	source_transcript=hg002_chrY_paternal_238.3;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.3,hg002_chrY_paternal_238.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000425;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000425;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000425:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9772308	9772413	.	+	.	source_transcript=hg002_chrY_paternal_238.3;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.3,hg002_chrY_paternal_238.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000425;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000425;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000425:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9772414	9772495	.	+	.	source_transcript=hg002_chrY_paternal_238.3;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.3,hg002_chrY_paternal_238.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000425;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000425;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000425:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9772414	9772465	.	+	1	source_transcript=hg002_chrY_paternal_238.3;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.3,hg002_chrY_paternal_238.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000425;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000425;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000425:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9772463	9772465	.	+	0	source_transcript=hg002_chrY_paternal_238.3;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.3,hg002_chrY_paternal_238.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000425;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000425;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000425;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9772496	9773189	.	+	.	source_transcript=hg002_chrY_paternal_238.3;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.3,hg002_chrY_paternal_238.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000425;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000425;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=intron:HG003_chrY_T0000425:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9773190	9773400	.	+	.	source_transcript=hg002_chrY_paternal_238.3;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_238.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.3,hg002_chrY_paternal_238.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000425;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000425;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=exon:HG003_chrY_T0000425:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9770604	9773400	1000	+	.	source_transcript=hg002_chrY_paternal_238.4;source_transcript_name=hg002_chrY_paternal_238.1;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_238.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.4,hg002_chrY_paternal_238.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000426;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_G0000164;transcript_name=hg002_chrY_paternal_238.1;gene_name=TSPY10;ID=HG003_chrY_T0000426;Name=TSPY10
HG003_chrY	CAT	exon	9770604	9771135	.	+	.	source_transcript=hg002_chrY_paternal_238.4;source_transcript_name=hg002_chrY_paternal_238.1;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_238.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.4,hg002_chrY_paternal_238.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000426;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000426;transcript_name=hg002_chrY_paternal_238.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000426:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9771136	9771742	.	+	.	source_transcript=hg002_chrY_paternal_238.4;source_transcript_name=hg002_chrY_paternal_238.1;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_238.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.4,hg002_chrY_paternal_238.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000426;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000426;transcript_name=hg002_chrY_paternal_238.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000426:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9771743	9771820	.	+	.	source_transcript=hg002_chrY_paternal_238.4;source_transcript_name=hg002_chrY_paternal_238.1;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_238.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.4,hg002_chrY_paternal_238.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000426;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000426;transcript_name=hg002_chrY_paternal_238.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000426:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9771821	9771948	.	+	.	source_transcript=hg002_chrY_paternal_238.4;source_transcript_name=hg002_chrY_paternal_238.1;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_238.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.4,hg002_chrY_paternal_238.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000426;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000426;transcript_name=hg002_chrY_paternal_238.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000426:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9771949	9772060	.	+	.	source_transcript=hg002_chrY_paternal_238.4;source_transcript_name=hg002_chrY_paternal_238.1;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_238.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.4,hg002_chrY_paternal_238.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000426;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000426;transcript_name=hg002_chrY_paternal_238.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000426:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9772061	9772168	.	+	.	source_transcript=hg002_chrY_paternal_238.4;source_transcript_name=hg002_chrY_paternal_238.1;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_238.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.4,hg002_chrY_paternal_238.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000426;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000426;transcript_name=hg002_chrY_paternal_238.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000426:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9772169	9772307	.	+	.	source_transcript=hg002_chrY_paternal_238.4;source_transcript_name=hg002_chrY_paternal_238.1;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_238.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.4,hg002_chrY_paternal_238.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000426;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000426;transcript_name=hg002_chrY_paternal_238.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000426:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9772308	9772402	.	+	.	source_transcript=hg002_chrY_paternal_238.4;source_transcript_name=hg002_chrY_paternal_238.1;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_238.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.4,hg002_chrY_paternal_238.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000426;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000426;transcript_name=hg002_chrY_paternal_238.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000426:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9772403	9772495	.	+	.	source_transcript=hg002_chrY_paternal_238.4;source_transcript_name=hg002_chrY_paternal_238.1;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_238.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.4,hg002_chrY_paternal_238.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000426;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000426;transcript_name=hg002_chrY_paternal_238.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000426:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9772496	9773189	.	+	.	source_transcript=hg002_chrY_paternal_238.4;source_transcript_name=hg002_chrY_paternal_238.1;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_238.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.4,hg002_chrY_paternal_238.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000426;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000426;transcript_name=hg002_chrY_paternal_238.1;gene_name=TSPY10;ID=intron:HG003_chrY_T0000426:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9773190	9773400	.	+	.	source_transcript=hg002_chrY_paternal_238.4;source_transcript_name=hg002_chrY_paternal_238.1;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_238.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_238.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.4,hg002_chrY_paternal_238.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000426;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000426;transcript_name=hg002_chrY_paternal_238.1;gene_name=TSPY10;ID=exon:HG003_chrY_T0000426:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9782712	9788304	.	-	.	source_gene_common_name=FAM197Y3;source_gene=hg002_chrY_paternal_239;alternative_source_transcripts=hg002_chrY_paternal_239.1,hg002_chrY_paternal_239.1;gene_id=HG003_chrY_G0000165;gene_biotype=lncRNA;gene_name=FAM197Y3;gene_sources=liftoff;ID=HG003_chrY_G0000165;Name=FAM197Y3
HG003_chrY	CAT	transcript	9782712	9788304	1000	-	.	source_transcript=hg002_chrY_paternal_239.1;source_transcript_name=hg002_chrY_paternal_239.1;source_gene=hg002_chrY_paternal_239;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_239;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_239.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_239.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_239.1,hg002_chrY_paternal_239.1;transcript_id=HG003_chrY_T0000427;gene_id=HG003_chrY_G0000165;Parent=HG003_chrY_G0000165;transcript_name=hg002_chrY_paternal_239.1;gene_name=FAM197Y3;ID=HG003_chrY_T0000427;Name=FAM197Y3
HG003_chrY	CAT	exon	9782712	9782771	.	-	.	source_transcript=hg002_chrY_paternal_239.1;source_transcript_name=hg002_chrY_paternal_239.1;source_gene=hg002_chrY_paternal_239;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_239;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_239.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_239.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_239.1,hg002_chrY_paternal_239.1;transcript_id=HG003_chrY_T0000427;gene_id=HG003_chrY_G0000165;Parent=HG003_chrY_T0000427;transcript_name=hg002_chrY_paternal_239.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000427:0;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9782772	9786322	.	-	.	source_transcript=hg002_chrY_paternal_239.1;source_transcript_name=hg002_chrY_paternal_239.1;source_gene=hg002_chrY_paternal_239;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_239;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_239.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_239.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_239.1,hg002_chrY_paternal_239.1;transcript_id=HG003_chrY_T0000427;gene_id=HG003_chrY_G0000165;Parent=HG003_chrY_T0000427;transcript_name=hg002_chrY_paternal_239.1;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000427:0;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9786323	9786481	.	-	.	source_transcript=hg002_chrY_paternal_239.1;source_transcript_name=hg002_chrY_paternal_239.1;source_gene=hg002_chrY_paternal_239;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_239;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_239.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_239.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_239.1,hg002_chrY_paternal_239.1;transcript_id=HG003_chrY_T0000427;gene_id=HG003_chrY_G0000165;Parent=HG003_chrY_T0000427;transcript_name=hg002_chrY_paternal_239.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000427:1;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9786482	9787970	.	-	.	source_transcript=hg002_chrY_paternal_239.1;source_transcript_name=hg002_chrY_paternal_239.1;source_gene=hg002_chrY_paternal_239;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_239;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_239.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_239.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_239.1,hg002_chrY_paternal_239.1;transcript_id=HG003_chrY_T0000427;gene_id=HG003_chrY_G0000165;Parent=HG003_chrY_T0000427;transcript_name=hg002_chrY_paternal_239.1;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000427:1;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9787971	9788116	.	-	.	source_transcript=hg002_chrY_paternal_239.1;source_transcript_name=hg002_chrY_paternal_239.1;source_gene=hg002_chrY_paternal_239;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_239;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_239.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_239.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_239.1,hg002_chrY_paternal_239.1;transcript_id=HG003_chrY_T0000427;gene_id=HG003_chrY_G0000165;Parent=HG003_chrY_T0000427;transcript_name=hg002_chrY_paternal_239.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000427:2;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9788117	9788202	.	-	.	source_transcript=hg002_chrY_paternal_239.1;source_transcript_name=hg002_chrY_paternal_239.1;source_gene=hg002_chrY_paternal_239;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_239;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_239.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_239.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_239.1,hg002_chrY_paternal_239.1;transcript_id=HG003_chrY_T0000427;gene_id=HG003_chrY_G0000165;Parent=HG003_chrY_T0000427;transcript_name=hg002_chrY_paternal_239.1;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000427:2;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9788203	9788304	.	-	.	source_transcript=hg002_chrY_paternal_239.1;source_transcript_name=hg002_chrY_paternal_239.1;source_gene=hg002_chrY_paternal_239;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_239;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_239.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_239.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_239.1,hg002_chrY_paternal_239.1;transcript_id=HG003_chrY_T0000427;gene_id=HG003_chrY_G0000165;Parent=HG003_chrY_T0000427;transcript_name=hg002_chrY_paternal_239.1;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000427:3;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9790917	9793729	.	+	.	source_gene_common_name=TSPY9;source_gene=hg002_chrY_paternal_240;alternative_source_transcripts=hg002_chrY_paternal_240.1,hg002_chrY_paternal_240.1;gene_id=HG003_chrY_G0000166;gene_biotype=protein_coding;gene_name=TSPY9;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000166;Name=TSPY9
HG003_chrY	CAT	transcript	9790917	9793729	100	+	.	source_transcript=hg002_chrY_paternal_240.1;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.1,hg002_chrY_paternal_240.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000428;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_G0000166;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=HG003_chrY_T0000428;Name=TSPY9
HG003_chrY	CAT	exon	9790917	9791466	.	+	.	source_transcript=hg002_chrY_paternal_240.1;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.1,hg002_chrY_paternal_240.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000428;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000428;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000428:0;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9790963	9791466	.	+	0	source_transcript=hg002_chrY_paternal_240.1;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.1,hg002_chrY_paternal_240.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000428;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000428;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000428:0;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9790963	9790965	.	+	0	source_transcript=hg002_chrY_paternal_240.1;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.1,hg002_chrY_paternal_240.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000428;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000428;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=start_codon:HG003_chrY_T0000428;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9791467	9792073	.	+	.	source_transcript=hg002_chrY_paternal_240.1;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.1,hg002_chrY_paternal_240.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000428;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000428;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000428:0;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9792074	9792151	.	+	.	source_transcript=hg002_chrY_paternal_240.1;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.1,hg002_chrY_paternal_240.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000428;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000428;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000428:1;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9792074	9792151	.	+	0	source_transcript=hg002_chrY_paternal_240.1;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.1,hg002_chrY_paternal_240.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000428;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000428;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000428:1;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9792152	9792279	.	+	.	source_transcript=hg002_chrY_paternal_240.1;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.1,hg002_chrY_paternal_240.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000428;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000428;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000428:1;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9792280	9792391	.	+	.	source_transcript=hg002_chrY_paternal_240.1;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.1,hg002_chrY_paternal_240.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000428;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000428;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000428:2;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9792280	9792391	.	+	0	source_transcript=hg002_chrY_paternal_240.1;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.1,hg002_chrY_paternal_240.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000428;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000428;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000428:2;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9792392	9792492	.	+	.	source_transcript=hg002_chrY_paternal_240.1;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.1,hg002_chrY_paternal_240.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000428;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000428;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000428:2;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9792493	9792638	.	+	.	source_transcript=hg002_chrY_paternal_240.1;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.1,hg002_chrY_paternal_240.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000428;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000428;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000428:3;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9792493	9792638	.	+	2	source_transcript=hg002_chrY_paternal_240.1;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.1,hg002_chrY_paternal_240.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000428;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000428;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000428:3;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9792639	9792744	.	+	.	source_transcript=hg002_chrY_paternal_240.1;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.1,hg002_chrY_paternal_240.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000428;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000428;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000428:3;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9792745	9792826	.	+	.	source_transcript=hg002_chrY_paternal_240.1;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.1,hg002_chrY_paternal_240.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000428;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000428;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000428:4;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9792745	9792826	.	+	0	source_transcript=hg002_chrY_paternal_240.1;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.1,hg002_chrY_paternal_240.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000428;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000428;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000428:4;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9792827	9793518	.	+	.	source_transcript=hg002_chrY_paternal_240.1;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.1,hg002_chrY_paternal_240.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000428;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000428;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000428:4;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9793519	9793729	.	+	.	source_transcript=hg002_chrY_paternal_240.1;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.1,hg002_chrY_paternal_240.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000428;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000428;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000428:5;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9793519	9793541	.	+	2	source_transcript=hg002_chrY_paternal_240.1;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.1,hg002_chrY_paternal_240.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000428;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000428;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000428:5;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9793539	9793541	.	+	0	source_transcript=hg002_chrY_paternal_240.1;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.1,hg002_chrY_paternal_240.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000428;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000428;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=stop_codon:HG003_chrY_T0000428;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9790917	9793729	100	+	.	source_transcript=hg002_chrY_paternal_240.2;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.2,hg002_chrY_paternal_240.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000429;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_G0000166;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=HG003_chrY_T0000429;Name=TSPY9
HG003_chrY	CAT	exon	9790917	9791466	.	+	.	source_transcript=hg002_chrY_paternal_240.2;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.2,hg002_chrY_paternal_240.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000429;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000429;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000429:0;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9790963	9791466	.	+	0	source_transcript=hg002_chrY_paternal_240.2;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.2,hg002_chrY_paternal_240.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000429;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000429;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000429:0;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9790963	9790965	.	+	0	source_transcript=hg002_chrY_paternal_240.2;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.2,hg002_chrY_paternal_240.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000429;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000429;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=start_codon:HG003_chrY_T0000429;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9791467	9792073	.	+	.	source_transcript=hg002_chrY_paternal_240.2;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.2,hg002_chrY_paternal_240.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000429;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000429;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000429:0;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9792074	9792151	.	+	.	source_transcript=hg002_chrY_paternal_240.2;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.2,hg002_chrY_paternal_240.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000429;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000429;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000429:1;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9792074	9792151	.	+	0	source_transcript=hg002_chrY_paternal_240.2;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.2,hg002_chrY_paternal_240.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000429;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000429;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000429:1;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9792152	9792279	.	+	.	source_transcript=hg002_chrY_paternal_240.2;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.2,hg002_chrY_paternal_240.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000429;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000429;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000429:1;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9792280	9792391	.	+	.	source_transcript=hg002_chrY_paternal_240.2;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.2,hg002_chrY_paternal_240.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000429;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000429;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000429:2;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9792280	9792391	.	+	0	source_transcript=hg002_chrY_paternal_240.2;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.2,hg002_chrY_paternal_240.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000429;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000429;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000429:2;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9792392	9792492	.	+	.	source_transcript=hg002_chrY_paternal_240.2;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.2,hg002_chrY_paternal_240.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000429;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000429;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000429:2;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9792493	9792638	.	+	.	source_transcript=hg002_chrY_paternal_240.2;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.2,hg002_chrY_paternal_240.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000429;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000429;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000429:3;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9792493	9792638	.	+	2	source_transcript=hg002_chrY_paternal_240.2;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.2,hg002_chrY_paternal_240.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000429;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000429;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000429:3;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9792639	9792733	.	+	.	source_transcript=hg002_chrY_paternal_240.2;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.2,hg002_chrY_paternal_240.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000429;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000429;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000429:3;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9792734	9792826	.	+	.	source_transcript=hg002_chrY_paternal_240.2;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.2,hg002_chrY_paternal_240.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000429;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000429;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000429:4;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9792734	9792796	.	+	0	source_transcript=hg002_chrY_paternal_240.2;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.2,hg002_chrY_paternal_240.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000429;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000429;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000429:4;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9792794	9792796	.	+	0	source_transcript=hg002_chrY_paternal_240.2;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.2,hg002_chrY_paternal_240.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000429;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000429;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=stop_codon:HG003_chrY_T0000429;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9792827	9793518	.	+	.	source_transcript=hg002_chrY_paternal_240.2;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.2,hg002_chrY_paternal_240.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000429;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000429;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=intron:HG003_chrY_T0000429:4;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9793519	9793729	.	+	.	source_transcript=hg002_chrY_paternal_240.2;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.2,hg002_chrY_paternal_240.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000429;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000429;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=exon:HG003_chrY_T0000429:5;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9873784	9878216	.	-	.	source_gene_common_name=RBMY3AP;source_gene=hg002_chrY_paternal_242;alternative_source_transcripts=hg002_chrY_paternal_242.1,hg002_chrY_paternal_242.1;gene_id=HG003_chrY_G0000167;gene_biotype=transcribed_pseudogene;gene_name=RBMY3AP;gene_sources=liftoff;ID=HG003_chrY_G0000167;Name=RBMY3AP
HG003_chrY	CAT	transcript	9873784	9878216	1000	-	.	source_transcript=hg002_chrY_paternal_242.1;source_transcript_name=hg002_chrY_paternal_242.1;source_gene=hg002_chrY_paternal_242;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_242;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_242.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_242.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY3AP;alternative_source_transcripts=hg002_chrY_paternal_242.1,hg002_chrY_paternal_242.1;transcript_id=HG003_chrY_T0000430;gene_id=HG003_chrY_G0000167;Parent=HG003_chrY_G0000167;transcript_name=hg002_chrY_paternal_242.1;gene_name=RBMY3AP;ID=HG003_chrY_T0000430;Name=RBMY3AP
HG003_chrY	CAT	exon	9873784	9873934	.	-	.	source_transcript=hg002_chrY_paternal_242.1;source_transcript_name=hg002_chrY_paternal_242.1;source_gene=hg002_chrY_paternal_242;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_242;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_242.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_242.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY3AP;alternative_source_transcripts=hg002_chrY_paternal_242.1,hg002_chrY_paternal_242.1;transcript_id=HG003_chrY_T0000430;gene_id=HG003_chrY_G0000167;Parent=HG003_chrY_T0000430;transcript_name=hg002_chrY_paternal_242.1;gene_name=RBMY3AP;ID=exon:HG003_chrY_T0000430:0;Name=RBMY3AP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9873935	9877844	.	-	.	source_transcript=hg002_chrY_paternal_242.1;source_transcript_name=hg002_chrY_paternal_242.1;source_gene=hg002_chrY_paternal_242;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_242;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_242.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_242.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY3AP;alternative_source_transcripts=hg002_chrY_paternal_242.1,hg002_chrY_paternal_242.1;transcript_id=HG003_chrY_T0000430;gene_id=HG003_chrY_G0000167;Parent=HG003_chrY_T0000430;transcript_name=hg002_chrY_paternal_242.1;gene_name=RBMY3AP;ID=intron:HG003_chrY_T0000430:0;Name=RBMY3AP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9877845	9877946	.	-	.	source_transcript=hg002_chrY_paternal_242.1;source_transcript_name=hg002_chrY_paternal_242.1;source_gene=hg002_chrY_paternal_242;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_242;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_242.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_242.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY3AP;alternative_source_transcripts=hg002_chrY_paternal_242.1,hg002_chrY_paternal_242.1;transcript_id=HG003_chrY_T0000430;gene_id=HG003_chrY_G0000167;Parent=HG003_chrY_T0000430;transcript_name=hg002_chrY_paternal_242.1;gene_name=RBMY3AP;ID=exon:HG003_chrY_T0000430:1;Name=RBMY3AP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9877947	9878152	.	-	.	source_transcript=hg002_chrY_paternal_242.1;source_transcript_name=hg002_chrY_paternal_242.1;source_gene=hg002_chrY_paternal_242;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_242;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_242.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_242.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY3AP;alternative_source_transcripts=hg002_chrY_paternal_242.1,hg002_chrY_paternal_242.1;transcript_id=HG003_chrY_T0000430;gene_id=HG003_chrY_G0000167;Parent=HG003_chrY_T0000430;transcript_name=hg002_chrY_paternal_242.1;gene_name=RBMY3AP;ID=intron:HG003_chrY_T0000430:1;Name=RBMY3AP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9878153	9878216	.	-	.	source_transcript=hg002_chrY_paternal_242.1;source_transcript_name=hg002_chrY_paternal_242.1;source_gene=hg002_chrY_paternal_242;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_242;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_242.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_242.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY3AP;alternative_source_transcripts=hg002_chrY_paternal_242.1,hg002_chrY_paternal_242.1;transcript_id=HG003_chrY_T0000430;gene_id=HG003_chrY_G0000167;Parent=HG003_chrY_T0000430;transcript_name=hg002_chrY_paternal_242.1;gene_name=RBMY3AP;ID=exon:HG003_chrY_T0000430:2;Name=RBMY3AP;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9954159	9956758	.	+	.	source_gene_common_name=TTTY8;source_gene=hg002_chrY_paternal_245;alternative_source_transcripts=hg002_chrY_paternal_245.1,hg002_chrY_paternal_245.1;gene_id=HG003_chrY_G0000168;gene_biotype=lncRNA;gene_name=TTTY8;gene_sources=liftoff;ID=HG003_chrY_G0000168;Name=TTTY8
HG003_chrY	CAT	transcript	9954159	9956758	1000	+	.	source_transcript=hg002_chrY_paternal_245.1;source_transcript_name=hg002_chrY_paternal_245.1;source_gene=hg002_chrY_paternal_245;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_245;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_245.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_245.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=hg002_chrY_paternal_245.1,hg002_chrY_paternal_245.1;transcript_id=HG003_chrY_T0000431;gene_id=HG003_chrY_G0000168;Parent=HG003_chrY_G0000168;transcript_name=hg002_chrY_paternal_245.1;gene_name=TTTY8;ID=HG003_chrY_T0000431;Name=TTTY8
HG003_chrY	CAT	exon	9954159	9954294	.	+	.	source_transcript=hg002_chrY_paternal_245.1;source_transcript_name=hg002_chrY_paternal_245.1;source_gene=hg002_chrY_paternal_245;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_245;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_245.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_245.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=hg002_chrY_paternal_245.1,hg002_chrY_paternal_245.1;transcript_id=HG003_chrY_T0000431;gene_id=HG003_chrY_G0000168;Parent=HG003_chrY_T0000431;transcript_name=hg002_chrY_paternal_245.1;gene_name=TTTY8;ID=exon:HG003_chrY_T0000431:0;Name=TTTY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9954295	9954771	.	+	.	source_transcript=hg002_chrY_paternal_245.1;source_transcript_name=hg002_chrY_paternal_245.1;source_gene=hg002_chrY_paternal_245;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_245;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_245.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_245.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=hg002_chrY_paternal_245.1,hg002_chrY_paternal_245.1;transcript_id=HG003_chrY_T0000431;gene_id=HG003_chrY_G0000168;Parent=HG003_chrY_T0000431;transcript_name=hg002_chrY_paternal_245.1;gene_name=TTTY8;ID=intron:HG003_chrY_T0000431:0;Name=TTTY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9954772	9954976	.	+	.	source_transcript=hg002_chrY_paternal_245.1;source_transcript_name=hg002_chrY_paternal_245.1;source_gene=hg002_chrY_paternal_245;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_245;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_245.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_245.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=hg002_chrY_paternal_245.1,hg002_chrY_paternal_245.1;transcript_id=HG003_chrY_T0000431;gene_id=HG003_chrY_G0000168;Parent=HG003_chrY_T0000431;transcript_name=hg002_chrY_paternal_245.1;gene_name=TTTY8;ID=exon:HG003_chrY_T0000431:1;Name=TTTY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9954977	9956568	.	+	.	source_transcript=hg002_chrY_paternal_245.1;source_transcript_name=hg002_chrY_paternal_245.1;source_gene=hg002_chrY_paternal_245;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_245;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_245.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_245.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=hg002_chrY_paternal_245.1,hg002_chrY_paternal_245.1;transcript_id=HG003_chrY_T0000431;gene_id=HG003_chrY_G0000168;Parent=HG003_chrY_T0000431;transcript_name=hg002_chrY_paternal_245.1;gene_name=TTTY8;ID=intron:HG003_chrY_T0000431:1;Name=TTTY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9956569	9956758	.	+	.	source_transcript=hg002_chrY_paternal_245.1;source_transcript_name=hg002_chrY_paternal_245.1;source_gene=hg002_chrY_paternal_245;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_245;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_245.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_245.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=hg002_chrY_paternal_245.1,hg002_chrY_paternal_245.1;transcript_id=HG003_chrY_T0000431;gene_id=HG003_chrY_G0000168;Parent=HG003_chrY_T0000431;transcript_name=hg002_chrY_paternal_245.1;gene_name=TTTY8;ID=exon:HG003_chrY_T0000431:2;Name=TTTY8;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9969883	9978321	.	-	.	source_gene_common_name=TTTY7B;source_gene=hg002_chrY_paternal_246;alternative_source_transcripts=hg002_chrY_paternal_246.1,hg002_chrY_paternal_246.1;gene_id=HG003_chrY_G0000169;gene_biotype=lncRNA;gene_name=TTTY7B;gene_sources=liftoff;ID=HG003_chrY_G0000169;Name=TTTY7B
HG003_chrY	CAT	transcript	9969883	9978321	1000	-	.	source_transcript=hg002_chrY_paternal_246.1;source_transcript_name=hg002_chrY_paternal_246.1;source_gene=hg002_chrY_paternal_246;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_246;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_246.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_246.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=hg002_chrY_paternal_246.1,hg002_chrY_paternal_246.1;transcript_id=HG003_chrY_T0000432;gene_id=HG003_chrY_G0000169;Parent=HG003_chrY_G0000169;transcript_name=hg002_chrY_paternal_246.1;gene_name=TTTY7B;ID=HG003_chrY_T0000432;Name=TTTY7B
HG003_chrY	CAT	exon	9969883	9970128	.	-	.	source_transcript=hg002_chrY_paternal_246.1;source_transcript_name=hg002_chrY_paternal_246.1;source_gene=hg002_chrY_paternal_246;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_246;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_246.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_246.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=hg002_chrY_paternal_246.1,hg002_chrY_paternal_246.1;transcript_id=HG003_chrY_T0000432;gene_id=HG003_chrY_G0000169;Parent=HG003_chrY_T0000432;transcript_name=hg002_chrY_paternal_246.1;gene_name=TTTY7B;ID=exon:HG003_chrY_T0000432:0;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9970129	9971603	.	-	.	source_transcript=hg002_chrY_paternal_246.1;source_transcript_name=hg002_chrY_paternal_246.1;source_gene=hg002_chrY_paternal_246;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_246;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_246.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_246.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=hg002_chrY_paternal_246.1,hg002_chrY_paternal_246.1;transcript_id=HG003_chrY_T0000432;gene_id=HG003_chrY_G0000169;Parent=HG003_chrY_T0000432;transcript_name=hg002_chrY_paternal_246.1;gene_name=TTTY7B;ID=intron:HG003_chrY_T0000432:0;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9971604	9971717	.	-	.	source_transcript=hg002_chrY_paternal_246.1;source_transcript_name=hg002_chrY_paternal_246.1;source_gene=hg002_chrY_paternal_246;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_246;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_246.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_246.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=hg002_chrY_paternal_246.1,hg002_chrY_paternal_246.1;transcript_id=HG003_chrY_T0000432;gene_id=HG003_chrY_G0000169;Parent=HG003_chrY_T0000432;transcript_name=hg002_chrY_paternal_246.1;gene_name=TTTY7B;ID=exon:HG003_chrY_T0000432:1;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9971718	9973634	.	-	.	source_transcript=hg002_chrY_paternal_246.1;source_transcript_name=hg002_chrY_paternal_246.1;source_gene=hg002_chrY_paternal_246;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_246;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_246.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_246.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=hg002_chrY_paternal_246.1,hg002_chrY_paternal_246.1;transcript_id=HG003_chrY_T0000432;gene_id=HG003_chrY_G0000169;Parent=HG003_chrY_T0000432;transcript_name=hg002_chrY_paternal_246.1;gene_name=TTTY7B;ID=intron:HG003_chrY_T0000432:1;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9973635	9974111	.	-	.	source_transcript=hg002_chrY_paternal_246.1;source_transcript_name=hg002_chrY_paternal_246.1;source_gene=hg002_chrY_paternal_246;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_246;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_246.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_246.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=hg002_chrY_paternal_246.1,hg002_chrY_paternal_246.1;transcript_id=HG003_chrY_T0000432;gene_id=HG003_chrY_G0000169;Parent=HG003_chrY_T0000432;transcript_name=hg002_chrY_paternal_246.1;gene_name=TTTY7B;ID=exon:HG003_chrY_T0000432:2;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9974112	9974799	.	-	.	source_transcript=hg002_chrY_paternal_246.1;source_transcript_name=hg002_chrY_paternal_246.1;source_gene=hg002_chrY_paternal_246;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_246;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_246.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_246.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=hg002_chrY_paternal_246.1,hg002_chrY_paternal_246.1;transcript_id=HG003_chrY_T0000432;gene_id=HG003_chrY_G0000169;Parent=HG003_chrY_T0000432;transcript_name=hg002_chrY_paternal_246.1;gene_name=TTTY7B;ID=intron:HG003_chrY_T0000432:2;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9974800	9974874	.	-	.	source_transcript=hg002_chrY_paternal_246.1;source_transcript_name=hg002_chrY_paternal_246.1;source_gene=hg002_chrY_paternal_246;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_246;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_246.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_246.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=hg002_chrY_paternal_246.1,hg002_chrY_paternal_246.1;transcript_id=HG003_chrY_T0000432;gene_id=HG003_chrY_G0000169;Parent=HG003_chrY_T0000432;transcript_name=hg002_chrY_paternal_246.1;gene_name=TTTY7B;ID=exon:HG003_chrY_T0000432:3;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9974875	9977181	.	-	.	source_transcript=hg002_chrY_paternal_246.1;source_transcript_name=hg002_chrY_paternal_246.1;source_gene=hg002_chrY_paternal_246;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_246;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_246.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_246.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=hg002_chrY_paternal_246.1,hg002_chrY_paternal_246.1;transcript_id=HG003_chrY_T0000432;gene_id=HG003_chrY_G0000169;Parent=HG003_chrY_T0000432;transcript_name=hg002_chrY_paternal_246.1;gene_name=TTTY7B;ID=intron:HG003_chrY_T0000432:3;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9977182	9977343	.	-	.	source_transcript=hg002_chrY_paternal_246.1;source_transcript_name=hg002_chrY_paternal_246.1;source_gene=hg002_chrY_paternal_246;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_246;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_246.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_246.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=hg002_chrY_paternal_246.1,hg002_chrY_paternal_246.1;transcript_id=HG003_chrY_T0000432;gene_id=HG003_chrY_G0000169;Parent=HG003_chrY_T0000432;transcript_name=hg002_chrY_paternal_246.1;gene_name=TTTY7B;ID=exon:HG003_chrY_T0000432:4;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9977344	9978284	.	-	.	source_transcript=hg002_chrY_paternal_246.1;source_transcript_name=hg002_chrY_paternal_246.1;source_gene=hg002_chrY_paternal_246;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_246;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_246.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_246.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=hg002_chrY_paternal_246.1,hg002_chrY_paternal_246.1;transcript_id=HG003_chrY_T0000432;gene_id=HG003_chrY_G0000169;Parent=HG003_chrY_T0000432;transcript_name=hg002_chrY_paternal_246.1;gene_name=TTTY7B;ID=intron:HG003_chrY_T0000432:4;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9978285	9978321	.	-	.	source_transcript=hg002_chrY_paternal_246.1;source_transcript_name=hg002_chrY_paternal_246.1;source_gene=hg002_chrY_paternal_246;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_246;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_246.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_246.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=hg002_chrY_paternal_246.1,hg002_chrY_paternal_246.1;transcript_id=HG003_chrY_T0000432;gene_id=HG003_chrY_G0000169;Parent=HG003_chrY_T0000432;transcript_name=hg002_chrY_paternal_246.1;gene_name=TTTY7B;ID=exon:HG003_chrY_T0000432:5;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9980712	9984355	.	-	.	source_gene_common_name=TTTY21;source_gene=hg002_chrY_paternal_247;alternative_source_transcripts=hg002_chrY_paternal_247.1,hg002_chrY_paternal_247.1;gene_id=HG003_chrY_G0000170;gene_biotype=lncRNA;gene_name=TTTY21;gene_sources=liftoff;ID=HG003_chrY_G0000170;Name=TTTY21
HG003_chrY	CAT	transcript	9980712	9984355	1000	-	.	source_transcript=hg002_chrY_paternal_247.1;source_transcript_name=hg002_chrY_paternal_247.1;source_gene=hg002_chrY_paternal_247;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_247;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_247.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_247.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY21;alternative_source_transcripts=hg002_chrY_paternal_247.1,hg002_chrY_paternal_247.1;transcript_id=HG003_chrY_T0000433;gene_id=HG003_chrY_G0000170;Parent=HG003_chrY_G0000170;transcript_name=hg002_chrY_paternal_247.1;gene_name=TTTY21;ID=HG003_chrY_T0000433;Name=TTTY21
HG003_chrY	CAT	exon	9980712	9980816	.	-	.	source_transcript=hg002_chrY_paternal_247.1;source_transcript_name=hg002_chrY_paternal_247.1;source_gene=hg002_chrY_paternal_247;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_247;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_247.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_247.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY21;alternative_source_transcripts=hg002_chrY_paternal_247.1,hg002_chrY_paternal_247.1;transcript_id=HG003_chrY_T0000433;gene_id=HG003_chrY_G0000170;Parent=HG003_chrY_T0000433;transcript_name=hg002_chrY_paternal_247.1;gene_name=TTTY21;ID=exon:HG003_chrY_T0000433:0;Name=TTTY21;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9980817	9984153	.	-	.	source_transcript=hg002_chrY_paternal_247.1;source_transcript_name=hg002_chrY_paternal_247.1;source_gene=hg002_chrY_paternal_247;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_247;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_247.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_247.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY21;alternative_source_transcripts=hg002_chrY_paternal_247.1,hg002_chrY_paternal_247.1;transcript_id=HG003_chrY_T0000433;gene_id=HG003_chrY_G0000170;Parent=HG003_chrY_T0000433;transcript_name=hg002_chrY_paternal_247.1;gene_name=TTTY21;ID=intron:HG003_chrY_T0000433:0;Name=TTTY21;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9984154	9984355	.	-	.	source_transcript=hg002_chrY_paternal_247.1;source_transcript_name=hg002_chrY_paternal_247.1;source_gene=hg002_chrY_paternal_247;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_247;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_247.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_247.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY21;alternative_source_transcripts=hg002_chrY_paternal_247.1,hg002_chrY_paternal_247.1;transcript_id=HG003_chrY_T0000433;gene_id=HG003_chrY_G0000170;Parent=HG003_chrY_T0000433;transcript_name=hg002_chrY_paternal_247.1;gene_name=TTTY21;ID=exon:HG003_chrY_T0000433:1;Name=TTTY21;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9999345	10021546	.	+	.	source_gene_common_name=TTTY2;source_gene=hg002_chrY_paternal_248;alternative_source_transcripts=hg002_chrY_paternal_248.1,hg002_chrY_paternal_248.1;gene_id=HG003_chrY_G0000171;gene_biotype=lncRNA;gene_name=TTTY2;gene_sources=liftoff;ID=HG003_chrY_G0000171;Name=TTTY2
HG003_chrY	CAT	transcript	9999345	10021546	1000	+	.	source_transcript=hg002_chrY_paternal_248.1;source_transcript_name=hg002_chrY_paternal_248.1;source_gene=hg002_chrY_paternal_248;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_248;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_248.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_248.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=hg002_chrY_paternal_248.1,hg002_chrY_paternal_248.1;transcript_id=HG003_chrY_T0000434;gene_id=HG003_chrY_G0000171;Parent=HG003_chrY_G0000171;transcript_name=hg002_chrY_paternal_248.1;gene_name=TTTY2;ID=HG003_chrY_T0000434;Name=TTTY2
HG003_chrY	CAT	exon	9999345	9999549	.	+	.	source_transcript=hg002_chrY_paternal_248.1;source_transcript_name=hg002_chrY_paternal_248.1;source_gene=hg002_chrY_paternal_248;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_248;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_248.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_248.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=hg002_chrY_paternal_248.1,hg002_chrY_paternal_248.1;transcript_id=HG003_chrY_T0000434;gene_id=HG003_chrY_G0000171;Parent=HG003_chrY_T0000434;transcript_name=hg002_chrY_paternal_248.1;gene_name=TTTY2;ID=exon:HG003_chrY_T0000434:0;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9999550	10005383	.	+	.	source_transcript=hg002_chrY_paternal_248.1;source_transcript_name=hg002_chrY_paternal_248.1;source_gene=hg002_chrY_paternal_248;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_248;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_248.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_248.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=hg002_chrY_paternal_248.1,hg002_chrY_paternal_248.1;transcript_id=HG003_chrY_T0000434;gene_id=HG003_chrY_G0000171;Parent=HG003_chrY_T0000434;transcript_name=hg002_chrY_paternal_248.1;gene_name=TTTY2;ID=intron:HG003_chrY_T0000434:0;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10005384	10005461	.	+	.	source_transcript=hg002_chrY_paternal_248.1;source_transcript_name=hg002_chrY_paternal_248.1;source_gene=hg002_chrY_paternal_248;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_248;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_248.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_248.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=hg002_chrY_paternal_248.1,hg002_chrY_paternal_248.1;transcript_id=HG003_chrY_T0000434;gene_id=HG003_chrY_G0000171;Parent=HG003_chrY_T0000434;transcript_name=hg002_chrY_paternal_248.1;gene_name=TTTY2;ID=exon:HG003_chrY_T0000434:1;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10005462	10007937	.	+	.	source_transcript=hg002_chrY_paternal_248.1;source_transcript_name=hg002_chrY_paternal_248.1;source_gene=hg002_chrY_paternal_248;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_248;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_248.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_248.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=hg002_chrY_paternal_248.1,hg002_chrY_paternal_248.1;transcript_id=HG003_chrY_T0000434;gene_id=HG003_chrY_G0000171;Parent=HG003_chrY_T0000434;transcript_name=hg002_chrY_paternal_248.1;gene_name=TTTY2;ID=intron:HG003_chrY_T0000434:1;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10007938	10008024	.	+	.	source_transcript=hg002_chrY_paternal_248.1;source_transcript_name=hg002_chrY_paternal_248.1;source_gene=hg002_chrY_paternal_248;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_248;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_248.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_248.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=hg002_chrY_paternal_248.1,hg002_chrY_paternal_248.1;transcript_id=HG003_chrY_T0000434;gene_id=HG003_chrY_G0000171;Parent=HG003_chrY_T0000434;transcript_name=hg002_chrY_paternal_248.1;gene_name=TTTY2;ID=exon:HG003_chrY_T0000434:2;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10008025	10015418	.	+	.	source_transcript=hg002_chrY_paternal_248.1;source_transcript_name=hg002_chrY_paternal_248.1;source_gene=hg002_chrY_paternal_248;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_248;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_248.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_248.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=hg002_chrY_paternal_248.1,hg002_chrY_paternal_248.1;transcript_id=HG003_chrY_T0000434;gene_id=HG003_chrY_G0000171;Parent=HG003_chrY_T0000434;transcript_name=hg002_chrY_paternal_248.1;gene_name=TTTY2;ID=intron:HG003_chrY_T0000434:2;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10015419	10015567	.	+	.	source_transcript=hg002_chrY_paternal_248.1;source_transcript_name=hg002_chrY_paternal_248.1;source_gene=hg002_chrY_paternal_248;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_248;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_248.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_248.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=hg002_chrY_paternal_248.1,hg002_chrY_paternal_248.1;transcript_id=HG003_chrY_T0000434;gene_id=HG003_chrY_G0000171;Parent=HG003_chrY_T0000434;transcript_name=hg002_chrY_paternal_248.1;gene_name=TTTY2;ID=exon:HG003_chrY_T0000434:3;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10015568	10016259	.	+	.	source_transcript=hg002_chrY_paternal_248.1;source_transcript_name=hg002_chrY_paternal_248.1;source_gene=hg002_chrY_paternal_248;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_248;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_248.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_248.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=hg002_chrY_paternal_248.1,hg002_chrY_paternal_248.1;transcript_id=HG003_chrY_T0000434;gene_id=HG003_chrY_G0000171;Parent=HG003_chrY_T0000434;transcript_name=hg002_chrY_paternal_248.1;gene_name=TTTY2;ID=intron:HG003_chrY_T0000434:3;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10016260	10016416	.	+	.	source_transcript=hg002_chrY_paternal_248.1;source_transcript_name=hg002_chrY_paternal_248.1;source_gene=hg002_chrY_paternal_248;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_248;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_248.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_248.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=hg002_chrY_paternal_248.1,hg002_chrY_paternal_248.1;transcript_id=HG003_chrY_T0000434;gene_id=HG003_chrY_G0000171;Parent=HG003_chrY_T0000434;transcript_name=hg002_chrY_paternal_248.1;gene_name=TTTY2;ID=exon:HG003_chrY_T0000434:4;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10016417	10019246	.	+	.	source_transcript=hg002_chrY_paternal_248.1;source_transcript_name=hg002_chrY_paternal_248.1;source_gene=hg002_chrY_paternal_248;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_248;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_248.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_248.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=hg002_chrY_paternal_248.1,hg002_chrY_paternal_248.1;transcript_id=HG003_chrY_T0000434;gene_id=HG003_chrY_G0000171;Parent=HG003_chrY_T0000434;transcript_name=hg002_chrY_paternal_248.1;gene_name=TTTY2;ID=intron:HG003_chrY_T0000434:4;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10019247	10019325	.	+	.	source_transcript=hg002_chrY_paternal_248.1;source_transcript_name=hg002_chrY_paternal_248.1;source_gene=hg002_chrY_paternal_248;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_248;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_248.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_248.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=hg002_chrY_paternal_248.1,hg002_chrY_paternal_248.1;transcript_id=HG003_chrY_T0000434;gene_id=HG003_chrY_G0000171;Parent=HG003_chrY_T0000434;transcript_name=hg002_chrY_paternal_248.1;gene_name=TTTY2;ID=exon:HG003_chrY_T0000434:5;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10019326	10019445	.	+	.	source_transcript=hg002_chrY_paternal_248.1;source_transcript_name=hg002_chrY_paternal_248.1;source_gene=hg002_chrY_paternal_248;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_248;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_248.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_248.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=hg002_chrY_paternal_248.1,hg002_chrY_paternal_248.1;transcript_id=HG003_chrY_T0000434;gene_id=HG003_chrY_G0000171;Parent=HG003_chrY_T0000434;transcript_name=hg002_chrY_paternal_248.1;gene_name=TTTY2;ID=intron:HG003_chrY_T0000434:5;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10019446	10019643	.	+	.	source_transcript=hg002_chrY_paternal_248.1;source_transcript_name=hg002_chrY_paternal_248.1;source_gene=hg002_chrY_paternal_248;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_248;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_248.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_248.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=hg002_chrY_paternal_248.1,hg002_chrY_paternal_248.1;transcript_id=HG003_chrY_T0000434;gene_id=HG003_chrY_G0000171;Parent=HG003_chrY_T0000434;transcript_name=hg002_chrY_paternal_248.1;gene_name=TTTY2;ID=exon:HG003_chrY_T0000434:6;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10019644	10020866	.	+	.	source_transcript=hg002_chrY_paternal_248.1;source_transcript_name=hg002_chrY_paternal_248.1;source_gene=hg002_chrY_paternal_248;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_248;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_248.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_248.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=hg002_chrY_paternal_248.1,hg002_chrY_paternal_248.1;transcript_id=HG003_chrY_T0000434;gene_id=HG003_chrY_G0000171;Parent=HG003_chrY_T0000434;transcript_name=hg002_chrY_paternal_248.1;gene_name=TTTY2;ID=intron:HG003_chrY_T0000434:6;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10020867	10021546	.	+	.	source_transcript=hg002_chrY_paternal_248.1;source_transcript_name=hg002_chrY_paternal_248.1;source_gene=hg002_chrY_paternal_248;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_248;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_248.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_248.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=hg002_chrY_paternal_248.1,hg002_chrY_paternal_248.1;transcript_id=HG003_chrY_T0000434;gene_id=HG003_chrY_G0000171;Parent=HG003_chrY_T0000434;transcript_name=hg002_chrY_paternal_248.1;gene_name=TTTY2;ID=exon:HG003_chrY_T0000434:7;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	10016226	10037391	.	-	.	source_gene_common_name=TTTY1B;source_gene=hg002_chrY_paternal_249;alternative_source_transcripts=hg002_chrY_paternal_249.1,hg002_chrY_paternal_249.1;gene_id=HG003_chrY_G0000172;gene_biotype=lncRNA;gene_name=TTTY1B;gene_sources=liftoff;ID=HG003_chrY_G0000172;Name=TTTY1B
HG003_chrY	CAT	transcript	10016226	10037391	1000	-	.	source_transcript=hg002_chrY_paternal_249.1;source_transcript_name=hg002_chrY_paternal_249.1;source_gene=hg002_chrY_paternal_249;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_249;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_249.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_249.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;alternative_source_transcripts=hg002_chrY_paternal_249.1,hg002_chrY_paternal_249.1;transcript_id=HG003_chrY_T0000435;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_G0000172;transcript_name=hg002_chrY_paternal_249.1;gene_name=TTTY1B;ID=HG003_chrY_T0000435;Name=TTTY1B
HG003_chrY	CAT	exon	10016226	10016483	.	-	.	source_transcript=hg002_chrY_paternal_249.1;source_transcript_name=hg002_chrY_paternal_249.1;source_gene=hg002_chrY_paternal_249;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_249;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_249.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_249.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;alternative_source_transcripts=hg002_chrY_paternal_249.1,hg002_chrY_paternal_249.1;transcript_id=HG003_chrY_T0000435;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000435;transcript_name=hg002_chrY_paternal_249.1;gene_name=TTTY1B;ID=exon:HG003_chrY_T0000435:0;Name=TTTY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10016484	10024064	.	-	.	source_transcript=hg002_chrY_paternal_249.1;source_transcript_name=hg002_chrY_paternal_249.1;source_gene=hg002_chrY_paternal_249;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_249;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_249.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_249.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;alternative_source_transcripts=hg002_chrY_paternal_249.1,hg002_chrY_paternal_249.1;transcript_id=HG003_chrY_T0000435;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000435;transcript_name=hg002_chrY_paternal_249.1;gene_name=TTTY1B;ID=intron:HG003_chrY_T0000435:0;Name=TTTY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10024065	10024202	.	-	.	source_transcript=hg002_chrY_paternal_249.1;source_transcript_name=hg002_chrY_paternal_249.1;source_gene=hg002_chrY_paternal_249;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_249;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_249.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_249.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;alternative_source_transcripts=hg002_chrY_paternal_249.1,hg002_chrY_paternal_249.1;transcript_id=HG003_chrY_T0000435;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000435;transcript_name=hg002_chrY_paternal_249.1;gene_name=TTTY1B;ID=exon:HG003_chrY_T0000435:1;Name=TTTY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10024203	10026558	.	-	.	source_transcript=hg002_chrY_paternal_249.1;source_transcript_name=hg002_chrY_paternal_249.1;source_gene=hg002_chrY_paternal_249;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_249;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_249.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_249.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;alternative_source_transcripts=hg002_chrY_paternal_249.1,hg002_chrY_paternal_249.1;transcript_id=HG003_chrY_T0000435;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000435;transcript_name=hg002_chrY_paternal_249.1;gene_name=TTTY1B;ID=intron:HG003_chrY_T0000435:1;Name=TTTY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10026559	10026667	.	-	.	source_transcript=hg002_chrY_paternal_249.1;source_transcript_name=hg002_chrY_paternal_249.1;source_gene=hg002_chrY_paternal_249;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_249;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_249.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_249.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;alternative_source_transcripts=hg002_chrY_paternal_249.1,hg002_chrY_paternal_249.1;transcript_id=HG003_chrY_T0000435;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000435;transcript_name=hg002_chrY_paternal_249.1;gene_name=TTTY1B;ID=exon:HG003_chrY_T0000435:2;Name=TTTY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10026668	10033532	.	-	.	source_transcript=hg002_chrY_paternal_249.1;source_transcript_name=hg002_chrY_paternal_249.1;source_gene=hg002_chrY_paternal_249;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_249;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_249.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_249.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;alternative_source_transcripts=hg002_chrY_paternal_249.1,hg002_chrY_paternal_249.1;transcript_id=HG003_chrY_T0000435;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000435;transcript_name=hg002_chrY_paternal_249.1;gene_name=TTTY1B;ID=intron:HG003_chrY_T0000435:2;Name=TTTY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10033533	10033692	.	-	.	source_transcript=hg002_chrY_paternal_249.1;source_transcript_name=hg002_chrY_paternal_249.1;source_gene=hg002_chrY_paternal_249;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_249;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_249.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_249.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;alternative_source_transcripts=hg002_chrY_paternal_249.1,hg002_chrY_paternal_249.1;transcript_id=HG003_chrY_T0000435;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000435;transcript_name=hg002_chrY_paternal_249.1;gene_name=TTTY1B;ID=exon:HG003_chrY_T0000435:3;Name=TTTY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10033693	10037116	.	-	.	source_transcript=hg002_chrY_paternal_249.1;source_transcript_name=hg002_chrY_paternal_249.1;source_gene=hg002_chrY_paternal_249;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_249;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_249.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_249.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;alternative_source_transcripts=hg002_chrY_paternal_249.1,hg002_chrY_paternal_249.1;transcript_id=HG003_chrY_T0000435;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000435;transcript_name=hg002_chrY_paternal_249.1;gene_name=TTTY1B;ID=intron:HG003_chrY_T0000435:3;Name=TTTY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10037117	10037391	.	-	.	source_transcript=hg002_chrY_paternal_249.1;source_transcript_name=hg002_chrY_paternal_249.1;source_gene=hg002_chrY_paternal_249;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_249;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_249.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_249.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;alternative_source_transcripts=hg002_chrY_paternal_249.1,hg002_chrY_paternal_249.1;transcript_id=HG003_chrY_T0000435;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000435;transcript_name=hg002_chrY_paternal_249.1;gene_name=TTTY1B;ID=exon:HG003_chrY_T0000435:4;Name=TTTY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	10057872	10061283	.	+	.	source_gene_common_name=LOC107987353;source_gene=hg002_chrY_paternal_250;alternative_source_transcripts=hg002_chrY_paternal_250.1,hg002_chrY_paternal_250.1;gene_id=HG003_chrY_G0000173;gene_biotype=lncRNA;gene_name=LOC107987353;gene_sources=liftoff;ID=HG003_chrY_G0000173;Name=LOC107987353
HG003_chrY	CAT	transcript	10057872	10061283	1000	+	.	source_transcript=hg002_chrY_paternal_250.1;source_transcript_name=hg002_chrY_paternal_250.1;source_gene=hg002_chrY_paternal_250;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_250;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_250.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_250.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987353;alternative_source_transcripts=hg002_chrY_paternal_250.1,hg002_chrY_paternal_250.1;transcript_id=HG003_chrY_T0000436;gene_id=HG003_chrY_G0000173;Parent=HG003_chrY_G0000173;transcript_name=hg002_chrY_paternal_250.1;gene_name=LOC107987353;ID=HG003_chrY_T0000436;Name=LOC107987353
HG003_chrY	CAT	exon	10057872	10058040	.	+	.	source_transcript=hg002_chrY_paternal_250.1;source_transcript_name=hg002_chrY_paternal_250.1;source_gene=hg002_chrY_paternal_250;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_250;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_250.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_250.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987353;alternative_source_transcripts=hg002_chrY_paternal_250.1,hg002_chrY_paternal_250.1;transcript_id=HG003_chrY_T0000436;gene_id=HG003_chrY_G0000173;Parent=HG003_chrY_T0000436;transcript_name=hg002_chrY_paternal_250.1;gene_name=LOC107987353;ID=exon:HG003_chrY_T0000436:0;Name=LOC107987353;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10058041	10058416	.	+	.	source_transcript=hg002_chrY_paternal_250.1;source_transcript_name=hg002_chrY_paternal_250.1;source_gene=hg002_chrY_paternal_250;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_250;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_250.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_250.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987353;alternative_source_transcripts=hg002_chrY_paternal_250.1,hg002_chrY_paternal_250.1;transcript_id=HG003_chrY_T0000436;gene_id=HG003_chrY_G0000173;Parent=HG003_chrY_T0000436;transcript_name=hg002_chrY_paternal_250.1;gene_name=LOC107987353;ID=intron:HG003_chrY_T0000436:0;Name=LOC107987353;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10058417	10058489	.	+	.	source_transcript=hg002_chrY_paternal_250.1;source_transcript_name=hg002_chrY_paternal_250.1;source_gene=hg002_chrY_paternal_250;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_250;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_250.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_250.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987353;alternative_source_transcripts=hg002_chrY_paternal_250.1,hg002_chrY_paternal_250.1;transcript_id=HG003_chrY_T0000436;gene_id=HG003_chrY_G0000173;Parent=HG003_chrY_T0000436;transcript_name=hg002_chrY_paternal_250.1;gene_name=LOC107987353;ID=exon:HG003_chrY_T0000436:1;Name=LOC107987353;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10058490	10061020	.	+	.	source_transcript=hg002_chrY_paternal_250.1;source_transcript_name=hg002_chrY_paternal_250.1;source_gene=hg002_chrY_paternal_250;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_250;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_250.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_250.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987353;alternative_source_transcripts=hg002_chrY_paternal_250.1,hg002_chrY_paternal_250.1;transcript_id=HG003_chrY_T0000436;gene_id=HG003_chrY_G0000173;Parent=HG003_chrY_T0000436;transcript_name=hg002_chrY_paternal_250.1;gene_name=LOC107987353;ID=intron:HG003_chrY_T0000436:1;Name=LOC107987353;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10061021	10061283	.	+	.	source_transcript=hg002_chrY_paternal_250.1;source_transcript_name=hg002_chrY_paternal_250.1;source_gene=hg002_chrY_paternal_250;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_250;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_250.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_250.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987353;alternative_source_transcripts=hg002_chrY_paternal_250.1,hg002_chrY_paternal_250.1;transcript_id=HG003_chrY_T0000436;gene_id=HG003_chrY_G0000173;Parent=HG003_chrY_T0000436;transcript_name=hg002_chrY_paternal_250.1;gene_name=LOC107987353;ID=exon:HG003_chrY_T0000436:2;Name=LOC107987353;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	10066381	10070587	.	+	.	source_gene_common_name=LINC00280;source_gene=hg002_chrY_paternal_251;alternative_source_transcripts=hg002_chrY_paternal_251.1,hg002_chrY_paternal_251.1;gene_id=HG003_chrY_G0000174;gene_biotype=lncRNA;gene_name=LINC00280;gene_sources=liftoff;ID=HG003_chrY_G0000174;Name=LINC00280
HG003_chrY	CAT	transcript	10066381	10070587	1000	+	.	source_transcript=hg002_chrY_paternal_251.1;source_transcript_name=hg002_chrY_paternal_251.1;source_gene=hg002_chrY_paternal_251;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_251;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_251.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_251.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00280;alternative_source_transcripts=hg002_chrY_paternal_251.1,hg002_chrY_paternal_251.1;transcript_id=HG003_chrY_T0000437;gene_id=HG003_chrY_G0000174;Parent=HG003_chrY_G0000174;transcript_name=hg002_chrY_paternal_251.1;gene_name=LINC00280;ID=HG003_chrY_T0000437;Name=LINC00280
HG003_chrY	CAT	exon	10066381	10066466	.	+	.	source_transcript=hg002_chrY_paternal_251.1;source_transcript_name=hg002_chrY_paternal_251.1;source_gene=hg002_chrY_paternal_251;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_251;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_251.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_251.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00280;alternative_source_transcripts=hg002_chrY_paternal_251.1,hg002_chrY_paternal_251.1;transcript_id=HG003_chrY_T0000437;gene_id=HG003_chrY_G0000174;Parent=HG003_chrY_T0000437;transcript_name=hg002_chrY_paternal_251.1;gene_name=LINC00280;ID=exon:HG003_chrY_T0000437:0;Name=LINC00280;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10066467	10068967	.	+	.	source_transcript=hg002_chrY_paternal_251.1;source_transcript_name=hg002_chrY_paternal_251.1;source_gene=hg002_chrY_paternal_251;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_251;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_251.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_251.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00280;alternative_source_transcripts=hg002_chrY_paternal_251.1,hg002_chrY_paternal_251.1;transcript_id=HG003_chrY_T0000437;gene_id=HG003_chrY_G0000174;Parent=HG003_chrY_T0000437;transcript_name=hg002_chrY_paternal_251.1;gene_name=LINC00280;ID=intron:HG003_chrY_T0000437:0;Name=LINC00280;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10068968	10069110	.	+	.	source_transcript=hg002_chrY_paternal_251.1;source_transcript_name=hg002_chrY_paternal_251.1;source_gene=hg002_chrY_paternal_251;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_251;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_251.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_251.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00280;alternative_source_transcripts=hg002_chrY_paternal_251.1,hg002_chrY_paternal_251.1;transcript_id=HG003_chrY_T0000437;gene_id=HG003_chrY_G0000174;Parent=HG003_chrY_T0000437;transcript_name=hg002_chrY_paternal_251.1;gene_name=LINC00280;ID=exon:HG003_chrY_T0000437:1;Name=LINC00280;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10069111	10070368	.	+	.	source_transcript=hg002_chrY_paternal_251.1;source_transcript_name=hg002_chrY_paternal_251.1;source_gene=hg002_chrY_paternal_251;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_251;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_251.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_251.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00280;alternative_source_transcripts=hg002_chrY_paternal_251.1,hg002_chrY_paternal_251.1;transcript_id=HG003_chrY_T0000437;gene_id=HG003_chrY_G0000174;Parent=HG003_chrY_T0000437;transcript_name=hg002_chrY_paternal_251.1;gene_name=LINC00280;ID=intron:HG003_chrY_T0000437:1;Name=LINC00280;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10070369	10070587	.	+	.	source_transcript=hg002_chrY_paternal_251.1;source_transcript_name=hg002_chrY_paternal_251.1;source_gene=hg002_chrY_paternal_251;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_251;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_251.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_251.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00280;alternative_source_transcripts=hg002_chrY_paternal_251.1,hg002_chrY_paternal_251.1;transcript_id=HG003_chrY_T0000437;gene_id=HG003_chrY_G0000174;Parent=HG003_chrY_T0000437;transcript_name=hg002_chrY_paternal_251.1;gene_name=LINC00280;ID=exon:HG003_chrY_T0000437:2;Name=LINC00280;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	10163898	10169501	.	+	.	source_gene_common_name=FAM197Y9;source_gene=hg002_chrY_paternal_255;alternative_source_transcripts=hg002_chrY_paternal_255.1,hg002_chrY_paternal_255.1;gene_id=HG003_chrY_G0000175;gene_biotype=lncRNA;gene_name=FAM197Y9;gene_sources=liftoff;ID=HG003_chrY_G0000175;Name=FAM197Y9
HG003_chrY	CAT	transcript	10163898	10169501	1000	+	.	source_transcript=hg002_chrY_paternal_255.1;source_transcript_name=hg002_chrY_paternal_255.1;source_gene=hg002_chrY_paternal_255;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_255;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_255.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_255.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;alternative_source_transcripts=hg002_chrY_paternal_255.1,hg002_chrY_paternal_255.1;transcript_id=HG003_chrY_T0000438;gene_id=HG003_chrY_G0000175;Parent=HG003_chrY_G0000175;transcript_name=hg002_chrY_paternal_255.1;gene_name=FAM197Y9;ID=HG003_chrY_T0000438;Name=FAM197Y9
HG003_chrY	CAT	exon	10163898	10163999	.	+	.	source_transcript=hg002_chrY_paternal_255.1;source_transcript_name=hg002_chrY_paternal_255.1;source_gene=hg002_chrY_paternal_255;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_255;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_255.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_255.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;alternative_source_transcripts=hg002_chrY_paternal_255.1,hg002_chrY_paternal_255.1;transcript_id=HG003_chrY_T0000438;gene_id=HG003_chrY_G0000175;Parent=HG003_chrY_T0000438;transcript_name=hg002_chrY_paternal_255.1;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000438:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10164000	10164085	.	+	.	source_transcript=hg002_chrY_paternal_255.1;source_transcript_name=hg002_chrY_paternal_255.1;source_gene=hg002_chrY_paternal_255;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_255;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_255.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_255.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;alternative_source_transcripts=hg002_chrY_paternal_255.1,hg002_chrY_paternal_255.1;transcript_id=HG003_chrY_T0000438;gene_id=HG003_chrY_G0000175;Parent=HG003_chrY_T0000438;transcript_name=hg002_chrY_paternal_255.1;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000438:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10164086	10164231	.	+	.	source_transcript=hg002_chrY_paternal_255.1;source_transcript_name=hg002_chrY_paternal_255.1;source_gene=hg002_chrY_paternal_255;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_255;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_255.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_255.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;alternative_source_transcripts=hg002_chrY_paternal_255.1,hg002_chrY_paternal_255.1;transcript_id=HG003_chrY_T0000438;gene_id=HG003_chrY_G0000175;Parent=HG003_chrY_T0000438;transcript_name=hg002_chrY_paternal_255.1;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000438:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10164232	10165731	.	+	.	source_transcript=hg002_chrY_paternal_255.1;source_transcript_name=hg002_chrY_paternal_255.1;source_gene=hg002_chrY_paternal_255;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_255;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_255.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_255.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;alternative_source_transcripts=hg002_chrY_paternal_255.1,hg002_chrY_paternal_255.1;transcript_id=HG003_chrY_T0000438;gene_id=HG003_chrY_G0000175;Parent=HG003_chrY_T0000438;transcript_name=hg002_chrY_paternal_255.1;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000438:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10165732	10165890	.	+	.	source_transcript=hg002_chrY_paternal_255.1;source_transcript_name=hg002_chrY_paternal_255.1;source_gene=hg002_chrY_paternal_255;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_255;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_255.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_255.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;alternative_source_transcripts=hg002_chrY_paternal_255.1,hg002_chrY_paternal_255.1;transcript_id=HG003_chrY_T0000438;gene_id=HG003_chrY_G0000175;Parent=HG003_chrY_T0000438;transcript_name=hg002_chrY_paternal_255.1;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000438:2;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10165891	10169441	.	+	.	source_transcript=hg002_chrY_paternal_255.1;source_transcript_name=hg002_chrY_paternal_255.1;source_gene=hg002_chrY_paternal_255;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_255;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_255.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_255.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;alternative_source_transcripts=hg002_chrY_paternal_255.1,hg002_chrY_paternal_255.1;transcript_id=HG003_chrY_T0000438;gene_id=HG003_chrY_G0000175;Parent=HG003_chrY_T0000438;transcript_name=hg002_chrY_paternal_255.1;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000438:2;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10169442	10169501	.	+	.	source_transcript=hg002_chrY_paternal_255.1;source_transcript_name=hg002_chrY_paternal_255.1;source_gene=hg002_chrY_paternal_255;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_255;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_255.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_255.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;alternative_source_transcripts=hg002_chrY_paternal_255.1,hg002_chrY_paternal_255.1;transcript_id=HG003_chrY_T0000438;gene_id=HG003_chrY_G0000175;Parent=HG003_chrY_T0000438;transcript_name=hg002_chrY_paternal_255.1;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000438:3;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	10178814	10181609	.	-	.	source_gene_common_name=TSPY2;source_gene=hg002_chrY_paternal_256;alternative_source_transcripts=hg002_chrY_paternal_256.1,hg002_chrY_paternal_256.1;gene_id=HG003_chrY_G0000176;gene_biotype=protein_coding;gene_name=TSPY2;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000176;Name=TSPY2
HG003_chrY	CAT	transcript	10178814	10181609	100	-	.	source_transcript=hg002_chrY_paternal_256.1;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.1,hg002_chrY_paternal_256.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000439;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_G0000176;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=HG003_chrY_T0000439;Name=TSPY2
HG003_chrY	CAT	exon	10178814	10179029	.	-	.	source_transcript=hg002_chrY_paternal_256.1;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.1,hg002_chrY_paternal_256.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000439;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000439;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=exon:HG003_chrY_T0000439:0;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	10179007	10179029	.	-	2	source_transcript=hg002_chrY_paternal_256.1;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.1,hg002_chrY_paternal_256.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000439;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000439;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=CDS:HG003_chrY_T0000439:0;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	10179007	10179009	.	-	0	source_transcript=hg002_chrY_paternal_256.1;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.1,hg002_chrY_paternal_256.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000439;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000439;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=stop_codon:HG003_chrY_T0000439;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10179030	10179723	.	-	.	source_transcript=hg002_chrY_paternal_256.1;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.1,hg002_chrY_paternal_256.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000439;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000439;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=intron:HG003_chrY_T0000439:0;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10179724	10179805	.	-	.	source_transcript=hg002_chrY_paternal_256.1;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.1,hg002_chrY_paternal_256.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000439;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000439;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=exon:HG003_chrY_T0000439:1;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	10179724	10179805	.	-	0	source_transcript=hg002_chrY_paternal_256.1;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.1,hg002_chrY_paternal_256.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000439;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000439;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=CDS:HG003_chrY_T0000439:1;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10179806	10179911	.	-	.	source_transcript=hg002_chrY_paternal_256.1;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.1,hg002_chrY_paternal_256.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000439;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000439;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=intron:HG003_chrY_T0000439:1;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10179912	10180057	.	-	.	source_transcript=hg002_chrY_paternal_256.1;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.1,hg002_chrY_paternal_256.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000439;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000439;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=exon:HG003_chrY_T0000439:2;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	10179912	10180057	.	-	2	source_transcript=hg002_chrY_paternal_256.1;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.1,hg002_chrY_paternal_256.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000439;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000439;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=CDS:HG003_chrY_T0000439:2;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10180058	10180158	.	-	.	source_transcript=hg002_chrY_paternal_256.1;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.1,hg002_chrY_paternal_256.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000439;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000439;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=intron:HG003_chrY_T0000439:2;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10180159	10180270	.	-	.	source_transcript=hg002_chrY_paternal_256.1;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.1,hg002_chrY_paternal_256.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000439;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000439;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=exon:HG003_chrY_T0000439:3;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	10180159	10180270	.	-	0	source_transcript=hg002_chrY_paternal_256.1;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.1,hg002_chrY_paternal_256.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000439;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000439;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=CDS:HG003_chrY_T0000439:3;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10180271	10180398	.	-	.	source_transcript=hg002_chrY_paternal_256.1;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.1,hg002_chrY_paternal_256.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000439;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000439;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=intron:HG003_chrY_T0000439:3;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10180399	10180476	.	-	.	source_transcript=hg002_chrY_paternal_256.1;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.1,hg002_chrY_paternal_256.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000439;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000439;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=exon:HG003_chrY_T0000439:4;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	10180399	10180476	.	-	0	source_transcript=hg002_chrY_paternal_256.1;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.1,hg002_chrY_paternal_256.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000439;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000439;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=CDS:HG003_chrY_T0000439:4;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10180477	10181077	.	-	.	source_transcript=hg002_chrY_paternal_256.1;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.1,hg002_chrY_paternal_256.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000439;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000439;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=intron:HG003_chrY_T0000439:4;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10181078	10181609	.	-	.	source_transcript=hg002_chrY_paternal_256.1;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.1,hg002_chrY_paternal_256.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000439;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000439;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=exon:HG003_chrY_T0000439:5;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	10181078	10181563	.	-	0	source_transcript=hg002_chrY_paternal_256.1;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.1,hg002_chrY_paternal_256.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000439;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000439;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=CDS:HG003_chrY_T0000439:5;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	10181561	10181563	.	-	0	source_transcript=hg002_chrY_paternal_256.1;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.1,hg002_chrY_paternal_256.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000439;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000439;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=start_codon:HG003_chrY_T0000439;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	10178814	10181609	100	-	.	source_transcript=hg002_chrY_paternal_256.2;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.2,hg002_chrY_paternal_256.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000440;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_G0000176;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=HG003_chrY_T0000440;Name=TSPY2
HG003_chrY	CAT	exon	10178814	10179029	.	-	.	source_transcript=hg002_chrY_paternal_256.2;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.2,hg002_chrY_paternal_256.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000440;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000440;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=exon:HG003_chrY_T0000440:0;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10179030	10179723	.	-	.	source_transcript=hg002_chrY_paternal_256.2;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.2,hg002_chrY_paternal_256.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000440;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000440;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=intron:HG003_chrY_T0000440:0;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10179724	10179816	.	-	.	source_transcript=hg002_chrY_paternal_256.2;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.2,hg002_chrY_paternal_256.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000440;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000440;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=exon:HG003_chrY_T0000440:1;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	10179754	10179816	.	-	0	source_transcript=hg002_chrY_paternal_256.2;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.2,hg002_chrY_paternal_256.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000440;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000440;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=CDS:HG003_chrY_T0000440:0;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	10179754	10179756	.	-	0	source_transcript=hg002_chrY_paternal_256.2;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.2,hg002_chrY_paternal_256.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000440;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000440;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=stop_codon:HG003_chrY_T0000440;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10179817	10179911	.	-	.	source_transcript=hg002_chrY_paternal_256.2;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.2,hg002_chrY_paternal_256.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000440;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000440;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=intron:HG003_chrY_T0000440:1;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10179912	10180057	.	-	.	source_transcript=hg002_chrY_paternal_256.2;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.2,hg002_chrY_paternal_256.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000440;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000440;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=exon:HG003_chrY_T0000440:2;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	10179912	10180057	.	-	2	source_transcript=hg002_chrY_paternal_256.2;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.2,hg002_chrY_paternal_256.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000440;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000440;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=CDS:HG003_chrY_T0000440:1;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10180058	10180158	.	-	.	source_transcript=hg002_chrY_paternal_256.2;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.2,hg002_chrY_paternal_256.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000440;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000440;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=intron:HG003_chrY_T0000440:2;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10180159	10180270	.	-	.	source_transcript=hg002_chrY_paternal_256.2;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.2,hg002_chrY_paternal_256.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000440;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000440;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=exon:HG003_chrY_T0000440:3;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	10180159	10180270	.	-	0	source_transcript=hg002_chrY_paternal_256.2;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.2,hg002_chrY_paternal_256.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000440;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000440;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=CDS:HG003_chrY_T0000440:2;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10180271	10180398	.	-	.	source_transcript=hg002_chrY_paternal_256.2;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.2,hg002_chrY_paternal_256.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000440;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000440;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=intron:HG003_chrY_T0000440:3;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10180399	10180476	.	-	.	source_transcript=hg002_chrY_paternal_256.2;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.2,hg002_chrY_paternal_256.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000440;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000440;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=exon:HG003_chrY_T0000440:4;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	10180399	10180476	.	-	0	source_transcript=hg002_chrY_paternal_256.2;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.2,hg002_chrY_paternal_256.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000440;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000440;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=CDS:HG003_chrY_T0000440:3;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10180477	10181077	.	-	.	source_transcript=hg002_chrY_paternal_256.2;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.2,hg002_chrY_paternal_256.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000440;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000440;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=intron:HG003_chrY_T0000440:4;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10181078	10181609	.	-	.	source_transcript=hg002_chrY_paternal_256.2;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.2,hg002_chrY_paternal_256.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000440;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000440;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=exon:HG003_chrY_T0000440:5;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	10181078	10181563	.	-	0	source_transcript=hg002_chrY_paternal_256.2;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.2,hg002_chrY_paternal_256.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000440;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000440;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=CDS:HG003_chrY_T0000440:4;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	10181561	10181563	.	-	0	source_transcript=hg002_chrY_paternal_256.2;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.2,hg002_chrY_paternal_256.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000440;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000440;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=start_codon:HG003_chrY_T0000440;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	10178814	10181609	100	-	.	source_transcript=hg002_chrY_paternal_256.3;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.3,hg002_chrY_paternal_256.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000441;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_G0000176;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=HG003_chrY_T0000441;Name=TSPY2
HG003_chrY	CAT	exon	10178814	10179029	.	-	.	source_transcript=hg002_chrY_paternal_256.3;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.3,hg002_chrY_paternal_256.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000441;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000441;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=exon:HG003_chrY_T0000441:0;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10179030	10179723	.	-	.	source_transcript=hg002_chrY_paternal_256.3;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.3,hg002_chrY_paternal_256.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000441;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000441;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=intron:HG003_chrY_T0000441:0;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10179724	10179805	.	-	.	source_transcript=hg002_chrY_paternal_256.3;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.3,hg002_chrY_paternal_256.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000441;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000441;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=exon:HG003_chrY_T0000441:1;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	10179754	10179805	.	-	1	source_transcript=hg002_chrY_paternal_256.3;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.3,hg002_chrY_paternal_256.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000441;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000441;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=CDS:HG003_chrY_T0000441:0;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	10179754	10179756	.	-	0	source_transcript=hg002_chrY_paternal_256.3;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.3,hg002_chrY_paternal_256.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000441;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000441;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=stop_codon:HG003_chrY_T0000441;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10179806	10179911	.	-	.	source_transcript=hg002_chrY_paternal_256.3;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.3,hg002_chrY_paternal_256.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000441;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000441;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=intron:HG003_chrY_T0000441:1;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10179912	10180050	.	-	.	source_transcript=hg002_chrY_paternal_256.3;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.3,hg002_chrY_paternal_256.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000441;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000441;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=exon:HG003_chrY_T0000441:2;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	10179912	10180050	.	-	2	source_transcript=hg002_chrY_paternal_256.3;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.3,hg002_chrY_paternal_256.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000441;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000441;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=CDS:HG003_chrY_T0000441:1;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10180051	10180158	.	-	.	source_transcript=hg002_chrY_paternal_256.3;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.3,hg002_chrY_paternal_256.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000441;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000441;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=intron:HG003_chrY_T0000441:2;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10180159	10180270	.	-	.	source_transcript=hg002_chrY_paternal_256.3;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.3,hg002_chrY_paternal_256.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000441;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000441;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=exon:HG003_chrY_T0000441:3;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	10180159	10180270	.	-	0	source_transcript=hg002_chrY_paternal_256.3;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.3,hg002_chrY_paternal_256.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000441;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000441;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=CDS:HG003_chrY_T0000441:2;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10180271	10180398	.	-	.	source_transcript=hg002_chrY_paternal_256.3;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.3,hg002_chrY_paternal_256.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000441;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000441;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=intron:HG003_chrY_T0000441:3;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10180399	10180476	.	-	.	source_transcript=hg002_chrY_paternal_256.3;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.3,hg002_chrY_paternal_256.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000441;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000441;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=exon:HG003_chrY_T0000441:4;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	10180399	10180476	.	-	0	source_transcript=hg002_chrY_paternal_256.3;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.3,hg002_chrY_paternal_256.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000441;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000441;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=CDS:HG003_chrY_T0000441:3;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10180477	10181077	.	-	.	source_transcript=hg002_chrY_paternal_256.3;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.3,hg002_chrY_paternal_256.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000441;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000441;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=intron:HG003_chrY_T0000441:4;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10181078	10181609	.	-	.	source_transcript=hg002_chrY_paternal_256.3;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.3,hg002_chrY_paternal_256.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000441;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000441;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=exon:HG003_chrY_T0000441:5;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	10181078	10181563	.	-	0	source_transcript=hg002_chrY_paternal_256.3;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.3,hg002_chrY_paternal_256.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000441;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000441;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=CDS:HG003_chrY_T0000441:4;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	10181561	10181563	.	-	0	source_transcript=hg002_chrY_paternal_256.3;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.3,hg002_chrY_paternal_256.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000441;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000441;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=start_codon:HG003_chrY_T0000441;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	10178814	10181609	1000	-	.	source_transcript=hg002_chrY_paternal_256.4;source_transcript_name=hg002_chrY_paternal_256.1;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_256.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.4,hg002_chrY_paternal_256.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000442;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_G0000176;transcript_name=hg002_chrY_paternal_256.1;gene_name=TSPY2;ID=HG003_chrY_T0000442;Name=TSPY2
HG003_chrY	CAT	exon	10178814	10179029	.	-	.	source_transcript=hg002_chrY_paternal_256.4;source_transcript_name=hg002_chrY_paternal_256.1;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_256.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.4,hg002_chrY_paternal_256.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000442;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000442;transcript_name=hg002_chrY_paternal_256.1;gene_name=TSPY2;ID=exon:HG003_chrY_T0000442:0;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10179030	10179723	.	-	.	source_transcript=hg002_chrY_paternal_256.4;source_transcript_name=hg002_chrY_paternal_256.1;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_256.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.4,hg002_chrY_paternal_256.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000442;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000442;transcript_name=hg002_chrY_paternal_256.1;gene_name=TSPY2;ID=intron:HG003_chrY_T0000442:0;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10179724	10179816	.	-	.	source_transcript=hg002_chrY_paternal_256.4;source_transcript_name=hg002_chrY_paternal_256.1;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_256.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.4,hg002_chrY_paternal_256.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000442;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000442;transcript_name=hg002_chrY_paternal_256.1;gene_name=TSPY2;ID=exon:HG003_chrY_T0000442:1;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10179817	10179911	.	-	.	source_transcript=hg002_chrY_paternal_256.4;source_transcript_name=hg002_chrY_paternal_256.1;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_256.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.4,hg002_chrY_paternal_256.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000442;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000442;transcript_name=hg002_chrY_paternal_256.1;gene_name=TSPY2;ID=intron:HG003_chrY_T0000442:1;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10179912	10180050	.	-	.	source_transcript=hg002_chrY_paternal_256.4;source_transcript_name=hg002_chrY_paternal_256.1;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_256.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.4,hg002_chrY_paternal_256.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000442;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000442;transcript_name=hg002_chrY_paternal_256.1;gene_name=TSPY2;ID=exon:HG003_chrY_T0000442:2;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10180051	10180158	.	-	.	source_transcript=hg002_chrY_paternal_256.4;source_transcript_name=hg002_chrY_paternal_256.1;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_256.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.4,hg002_chrY_paternal_256.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000442;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000442;transcript_name=hg002_chrY_paternal_256.1;gene_name=TSPY2;ID=intron:HG003_chrY_T0000442:2;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10180159	10180270	.	-	.	source_transcript=hg002_chrY_paternal_256.4;source_transcript_name=hg002_chrY_paternal_256.1;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_256.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.4,hg002_chrY_paternal_256.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000442;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000442;transcript_name=hg002_chrY_paternal_256.1;gene_name=TSPY2;ID=exon:HG003_chrY_T0000442:3;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10180271	10180398	.	-	.	source_transcript=hg002_chrY_paternal_256.4;source_transcript_name=hg002_chrY_paternal_256.1;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_256.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.4,hg002_chrY_paternal_256.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000442;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000442;transcript_name=hg002_chrY_paternal_256.1;gene_name=TSPY2;ID=intron:HG003_chrY_T0000442:3;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10180399	10180476	.	-	.	source_transcript=hg002_chrY_paternal_256.4;source_transcript_name=hg002_chrY_paternal_256.1;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_256.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.4,hg002_chrY_paternal_256.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000442;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000442;transcript_name=hg002_chrY_paternal_256.1;gene_name=TSPY2;ID=exon:HG003_chrY_T0000442:4;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10180477	10181077	.	-	.	source_transcript=hg002_chrY_paternal_256.4;source_transcript_name=hg002_chrY_paternal_256.1;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_256.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.4,hg002_chrY_paternal_256.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000442;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000442;transcript_name=hg002_chrY_paternal_256.1;gene_name=TSPY2;ID=intron:HG003_chrY_T0000442:4;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10181078	10181609	.	-	.	source_transcript=hg002_chrY_paternal_256.4;source_transcript_name=hg002_chrY_paternal_256.1;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_256.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.4,hg002_chrY_paternal_256.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000442;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000442;transcript_name=hg002_chrY_paternal_256.1;gene_name=TSPY2;ID=exon:HG003_chrY_T0000442:5;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	10184213	10185377	.	+	.	source_gene_common_name=TTTY23B;source_gene=hg002_chrY_paternal_257;alternative_source_transcripts=hg002_chrY_paternal_257.1,hg002_chrY_paternal_257.1;gene_id=HG003_chrY_G0000177;gene_biotype=lncRNA;gene_name=TTTY23B;gene_sources=liftoff;ID=HG003_chrY_G0000177;Name=TTTY23B
HG003_chrY	CAT	transcript	10184213	10185377	1000	+	.	source_transcript=hg002_chrY_paternal_257.1;source_transcript_name=hg002_chrY_paternal_257.1;source_gene=hg002_chrY_paternal_257;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_257;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_257.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_257.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23B;alternative_source_transcripts=hg002_chrY_paternal_257.1,hg002_chrY_paternal_257.1;transcript_id=HG003_chrY_T0000443;gene_id=HG003_chrY_G0000177;Parent=HG003_chrY_G0000177;transcript_name=hg002_chrY_paternal_257.1;gene_name=TTTY23B;ID=HG003_chrY_T0000443;Name=TTTY23B
HG003_chrY	CAT	exon	10184213	10184269	.	+	.	source_transcript=hg002_chrY_paternal_257.1;source_transcript_name=hg002_chrY_paternal_257.1;source_gene=hg002_chrY_paternal_257;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_257;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_257.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_257.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23B;alternative_source_transcripts=hg002_chrY_paternal_257.1,hg002_chrY_paternal_257.1;transcript_id=HG003_chrY_T0000443;gene_id=HG003_chrY_G0000177;Parent=HG003_chrY_T0000443;transcript_name=hg002_chrY_paternal_257.1;gene_name=TTTY23B;ID=exon:HG003_chrY_T0000443:0;Name=TTTY23B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10184270	10184382	.	+	.	source_transcript=hg002_chrY_paternal_257.1;source_transcript_name=hg002_chrY_paternal_257.1;source_gene=hg002_chrY_paternal_257;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_257;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_257.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_257.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23B;alternative_source_transcripts=hg002_chrY_paternal_257.1,hg002_chrY_paternal_257.1;transcript_id=HG003_chrY_T0000443;gene_id=HG003_chrY_G0000177;Parent=HG003_chrY_T0000443;transcript_name=hg002_chrY_paternal_257.1;gene_name=TTTY23B;ID=intron:HG003_chrY_T0000443:0;Name=TTTY23B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10184383	10184528	.	+	.	source_transcript=hg002_chrY_paternal_257.1;source_transcript_name=hg002_chrY_paternal_257.1;source_gene=hg002_chrY_paternal_257;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_257;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_257.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_257.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23B;alternative_source_transcripts=hg002_chrY_paternal_257.1,hg002_chrY_paternal_257.1;transcript_id=HG003_chrY_T0000443;gene_id=HG003_chrY_G0000177;Parent=HG003_chrY_T0000443;transcript_name=hg002_chrY_paternal_257.1;gene_name=TTTY23B;ID=exon:HG003_chrY_T0000443:1;Name=TTTY23B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10184529	10185068	.	+	.	source_transcript=hg002_chrY_paternal_257.1;source_transcript_name=hg002_chrY_paternal_257.1;source_gene=hg002_chrY_paternal_257;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_257;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_257.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_257.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23B;alternative_source_transcripts=hg002_chrY_paternal_257.1,hg002_chrY_paternal_257.1;transcript_id=HG003_chrY_T0000443;gene_id=HG003_chrY_G0000177;Parent=HG003_chrY_T0000443;transcript_name=hg002_chrY_paternal_257.1;gene_name=TTTY23B;ID=intron:HG003_chrY_T0000443:1;Name=TTTY23B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10185069	10185377	.	+	.	source_transcript=hg002_chrY_paternal_257.1;source_transcript_name=hg002_chrY_paternal_257.1;source_gene=hg002_chrY_paternal_257;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_257;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_257.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_257.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23B;alternative_source_transcripts=hg002_chrY_paternal_257.1,hg002_chrY_paternal_257.1;transcript_id=HG003_chrY_T0000443;gene_id=HG003_chrY_G0000177;Parent=HG003_chrY_T0000443;transcript_name=hg002_chrY_paternal_257.1;gene_name=TTTY23B;ID=exon:HG003_chrY_T0000443:2;Name=TTTY23B;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	11296799	11299813	.	-	.	source_gene_common_name=LOC124904996;source_gene=hg002_chrY_paternal_275;alternative_source_transcripts=hg002_chrY_paternal_275.1,hg002_chrY_paternal_275.1;gene_id=HG003_chrY_G0000178;gene_biotype=lncRNA;gene_name=LOC124904996;gene_sources=liftoff;ID=HG003_chrY_G0000178;Name=LOC124904996
HG003_chrY	CAT	transcript	11296799	11299813	1000	-	.	source_transcript=hg002_chrY_paternal_275.1;source_transcript_name=hg002_chrY_paternal_275.1;source_gene=hg002_chrY_paternal_275;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_275;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_275.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_275.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124904996;alternative_source_transcripts=hg002_chrY_paternal_275.1,hg002_chrY_paternal_275.1;transcript_id=HG003_chrY_T0000444;gene_id=HG003_chrY_G0000178;Parent=HG003_chrY_G0000178;transcript_name=hg002_chrY_paternal_275.1;gene_name=LOC124904996;ID=HG003_chrY_T0000444;Name=LOC124904996
HG003_chrY	CAT	exon	11296799	11298064	.	-	.	source_transcript=hg002_chrY_paternal_275.1;source_transcript_name=hg002_chrY_paternal_275.1;source_gene=hg002_chrY_paternal_275;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_275;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_275.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_275.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124904996;alternative_source_transcripts=hg002_chrY_paternal_275.1,hg002_chrY_paternal_275.1;transcript_id=HG003_chrY_T0000444;gene_id=HG003_chrY_G0000178;Parent=HG003_chrY_T0000444;transcript_name=hg002_chrY_paternal_275.1;gene_name=LOC124904996;ID=exon:HG003_chrY_T0000444:0;Name=LOC124904996;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11298065	11299391	.	-	.	source_transcript=hg002_chrY_paternal_275.1;source_transcript_name=hg002_chrY_paternal_275.1;source_gene=hg002_chrY_paternal_275;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_275;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_275.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_275.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124904996;alternative_source_transcripts=hg002_chrY_paternal_275.1,hg002_chrY_paternal_275.1;transcript_id=HG003_chrY_T0000444;gene_id=HG003_chrY_G0000178;Parent=HG003_chrY_T0000444;transcript_name=hg002_chrY_paternal_275.1;gene_name=LOC124904996;ID=intron:HG003_chrY_T0000444:0;Name=LOC124904996;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11299392	11299813	.	-	.	source_transcript=hg002_chrY_paternal_275.1;source_transcript_name=hg002_chrY_paternal_275.1;source_gene=hg002_chrY_paternal_275;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_275;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_275.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_275.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124904996;alternative_source_transcripts=hg002_chrY_paternal_275.1,hg002_chrY_paternal_275.1;transcript_id=HG003_chrY_T0000444;gene_id=HG003_chrY_G0000178;Parent=HG003_chrY_T0000444;transcript_name=hg002_chrY_paternal_275.1;gene_name=LOC124904996;ID=exon:HG003_chrY_T0000444:1;Name=LOC124904996;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	11382343	11390700	.	-	.	source_gene_common_name=LOC105379273;source_gene=hg002_chrY_paternal_284;alternative_source_transcripts=hg002_chrY_paternal_284.1,hg002_chrY_paternal_284.1;gene_id=HG003_chrY_G0000179;gene_biotype=lncRNA;gene_name=LOC105379273;gene_sources=liftoff;ID=HG003_chrY_G0000179;Name=LOC105379273
HG003_chrY	CAT	transcript	11382343	11390700	1000	-	.	source_transcript=hg002_chrY_paternal_284.1;source_transcript_name=hg002_chrY_paternal_284.1;source_gene=hg002_chrY_paternal_284;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_284;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_284.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_284.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379273;alternative_source_transcripts=hg002_chrY_paternal_284.1,hg002_chrY_paternal_284.1;transcript_id=HG003_chrY_T0000445;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_G0000179;transcript_name=hg002_chrY_paternal_284.1;gene_name=LOC105379273;ID=HG003_chrY_T0000445;Name=LOC105379273
HG003_chrY	CAT	exon	11382343	11382384	.	-	.	source_transcript=hg002_chrY_paternal_284.1;source_transcript_name=hg002_chrY_paternal_284.1;source_gene=hg002_chrY_paternal_284;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_284;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_284.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_284.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379273;alternative_source_transcripts=hg002_chrY_paternal_284.1,hg002_chrY_paternal_284.1;transcript_id=HG003_chrY_T0000445;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000445;transcript_name=hg002_chrY_paternal_284.1;gene_name=LOC105379273;ID=exon:HG003_chrY_T0000445:0;Name=LOC105379273;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11382385	11388446	.	-	.	source_transcript=hg002_chrY_paternal_284.1;source_transcript_name=hg002_chrY_paternal_284.1;source_gene=hg002_chrY_paternal_284;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_284;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_284.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_284.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379273;alternative_source_transcripts=hg002_chrY_paternal_284.1,hg002_chrY_paternal_284.1;transcript_id=HG003_chrY_T0000445;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000445;transcript_name=hg002_chrY_paternal_284.1;gene_name=LOC105379273;ID=intron:HG003_chrY_T0000445:0;Name=LOC105379273;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11388447	11388505	.	-	.	source_transcript=hg002_chrY_paternal_284.1;source_transcript_name=hg002_chrY_paternal_284.1;source_gene=hg002_chrY_paternal_284;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_284;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_284.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_284.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379273;alternative_source_transcripts=hg002_chrY_paternal_284.1,hg002_chrY_paternal_284.1;transcript_id=HG003_chrY_T0000445;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000445;transcript_name=hg002_chrY_paternal_284.1;gene_name=LOC105379273;ID=exon:HG003_chrY_T0000445:1;Name=LOC105379273;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11388506	11390640	.	-	.	source_transcript=hg002_chrY_paternal_284.1;source_transcript_name=hg002_chrY_paternal_284.1;source_gene=hg002_chrY_paternal_284;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_284;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_284.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_284.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379273;alternative_source_transcripts=hg002_chrY_paternal_284.1,hg002_chrY_paternal_284.1;transcript_id=HG003_chrY_T0000445;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000445;transcript_name=hg002_chrY_paternal_284.1;gene_name=LOC105379273;ID=intron:HG003_chrY_T0000445:1;Name=LOC105379273;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11390641	11390700	.	-	.	source_transcript=hg002_chrY_paternal_284.1;source_transcript_name=hg002_chrY_paternal_284.1;source_gene=hg002_chrY_paternal_284;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_284;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_284.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_284.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379273;alternative_source_transcripts=hg002_chrY_paternal_284.1,hg002_chrY_paternal_284.1;transcript_id=HG003_chrY_T0000445;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000445;transcript_name=hg002_chrY_paternal_284.1;gene_name=LOC105379273;ID=exon:HG003_chrY_T0000445:2;Name=LOC105379273;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	13216549	13225483	.	-	.	source_gene_common_name=LOC107987343;source_gene=hg002_chrY_paternal_305;alternative_source_transcripts=hg002_chrY_paternal_305.1,hg002_chrY_paternal_305.1;gene_id=HG003_chrY_G0000180;gene_biotype=lncRNA;gene_name=LOC107987343;gene_sources=liftoff;ID=HG003_chrY_G0000180;Name=LOC107987343
HG003_chrY	CAT	transcript	13216549	13225483	1000	-	.	source_transcript=hg002_chrY_paternal_305.1;source_transcript_name=hg002_chrY_paternal_305.1;source_gene=hg002_chrY_paternal_305;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_305;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_305.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_305.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987343;alternative_source_transcripts=hg002_chrY_paternal_305.1,hg002_chrY_paternal_305.1;transcript_id=HG003_chrY_T0000446;gene_id=HG003_chrY_G0000180;Parent=HG003_chrY_G0000180;transcript_name=hg002_chrY_paternal_305.1;gene_name=LOC107987343;ID=HG003_chrY_T0000446;Name=LOC107987343
HG003_chrY	CAT	exon	13216549	13217941	.	-	.	source_transcript=hg002_chrY_paternal_305.1;source_transcript_name=hg002_chrY_paternal_305.1;source_gene=hg002_chrY_paternal_305;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_305;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_305.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_305.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987343;alternative_source_transcripts=hg002_chrY_paternal_305.1,hg002_chrY_paternal_305.1;transcript_id=HG003_chrY_T0000446;gene_id=HG003_chrY_G0000180;Parent=HG003_chrY_T0000446;transcript_name=hg002_chrY_paternal_305.1;gene_name=LOC107987343;ID=exon:HG003_chrY_T0000446:0;Name=LOC107987343;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13217942	13220503	.	-	.	source_transcript=hg002_chrY_paternal_305.1;source_transcript_name=hg002_chrY_paternal_305.1;source_gene=hg002_chrY_paternal_305;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_305;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_305.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_305.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987343;alternative_source_transcripts=hg002_chrY_paternal_305.1,hg002_chrY_paternal_305.1;transcript_id=HG003_chrY_T0000446;gene_id=HG003_chrY_G0000180;Parent=HG003_chrY_T0000446;transcript_name=hg002_chrY_paternal_305.1;gene_name=LOC107987343;ID=intron:HG003_chrY_T0000446:0;Name=LOC107987343;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13220504	13220630	.	-	.	source_transcript=hg002_chrY_paternal_305.1;source_transcript_name=hg002_chrY_paternal_305.1;source_gene=hg002_chrY_paternal_305;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_305;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_305.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_305.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987343;alternative_source_transcripts=hg002_chrY_paternal_305.1,hg002_chrY_paternal_305.1;transcript_id=HG003_chrY_T0000446;gene_id=HG003_chrY_G0000180;Parent=HG003_chrY_T0000446;transcript_name=hg002_chrY_paternal_305.1;gene_name=LOC107987343;ID=exon:HG003_chrY_T0000446:1;Name=LOC107987343;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13220631	13223587	.	-	.	source_transcript=hg002_chrY_paternal_305.1;source_transcript_name=hg002_chrY_paternal_305.1;source_gene=hg002_chrY_paternal_305;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_305;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_305.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_305.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987343;alternative_source_transcripts=hg002_chrY_paternal_305.1,hg002_chrY_paternal_305.1;transcript_id=HG003_chrY_T0000446;gene_id=HG003_chrY_G0000180;Parent=HG003_chrY_T0000446;transcript_name=hg002_chrY_paternal_305.1;gene_name=LOC107987343;ID=intron:HG003_chrY_T0000446:1;Name=LOC107987343;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13223588	13225483	.	-	.	source_transcript=hg002_chrY_paternal_305.1;source_transcript_name=hg002_chrY_paternal_305.1;source_gene=hg002_chrY_paternal_305;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_305;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_305.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_305.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987343;alternative_source_transcripts=hg002_chrY_paternal_305.1,hg002_chrY_paternal_305.1;transcript_id=HG003_chrY_T0000446;gene_id=HG003_chrY_G0000180;Parent=HG003_chrY_T0000446;transcript_name=hg002_chrY_paternal_305.1;gene_name=LOC107987343;ID=exon:HG003_chrY_T0000446:2;Name=LOC107987343;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	13268080	13283554	.	-	.	source_gene_common_name=GYG2P1;source_gene=hg002_chrY_paternal_306;alternative_source_transcripts=hg002_chrY_paternal_306.1,hg002_chrY_paternal_306.1;gene_id=HG003_chrY_G0000181;gene_biotype=transcribed_pseudogene;gene_name=GYG2P1;gene_sources=liftoff;ID=HG003_chrY_G0000181;Name=GYG2P1
HG003_chrY	CAT	transcript	13268080	13283554	1000	-	.	source_transcript=hg002_chrY_paternal_306.1;source_transcript_name=hg002_chrY_paternal_306.1;source_gene=hg002_chrY_paternal_306;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_306;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_306.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_306.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GYG2P1;alternative_source_transcripts=hg002_chrY_paternal_306.1,hg002_chrY_paternal_306.1;transcript_id=HG003_chrY_T0000447;gene_id=HG003_chrY_G0000181;Parent=HG003_chrY_G0000181;transcript_name=hg002_chrY_paternal_306.1;gene_name=GYG2P1;ID=HG003_chrY_T0000447;Name=GYG2P1
HG003_chrY	CAT	exon	13268080	13268464	.	-	.	source_transcript=hg002_chrY_paternal_306.1;source_transcript_name=hg002_chrY_paternal_306.1;source_gene=hg002_chrY_paternal_306;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_306;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_306.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_306.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GYG2P1;alternative_source_transcripts=hg002_chrY_paternal_306.1,hg002_chrY_paternal_306.1;transcript_id=HG003_chrY_T0000447;gene_id=HG003_chrY_G0000181;Parent=HG003_chrY_T0000447;transcript_name=hg002_chrY_paternal_306.1;gene_name=GYG2P1;ID=exon:HG003_chrY_T0000447:0;Name=GYG2P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13268465	13268759	.	-	.	source_transcript=hg002_chrY_paternal_306.1;source_transcript_name=hg002_chrY_paternal_306.1;source_gene=hg002_chrY_paternal_306;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_306;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_306.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_306.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GYG2P1;alternative_source_transcripts=hg002_chrY_paternal_306.1,hg002_chrY_paternal_306.1;transcript_id=HG003_chrY_T0000447;gene_id=HG003_chrY_G0000181;Parent=HG003_chrY_T0000447;transcript_name=hg002_chrY_paternal_306.1;gene_name=GYG2P1;ID=intron:HG003_chrY_T0000447:0;Name=GYG2P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13268760	13268901	.	-	.	source_transcript=hg002_chrY_paternal_306.1;source_transcript_name=hg002_chrY_paternal_306.1;source_gene=hg002_chrY_paternal_306;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_306;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_306.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_306.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GYG2P1;alternative_source_transcripts=hg002_chrY_paternal_306.1,hg002_chrY_paternal_306.1;transcript_id=HG003_chrY_T0000447;gene_id=HG003_chrY_G0000181;Parent=HG003_chrY_T0000447;transcript_name=hg002_chrY_paternal_306.1;gene_name=GYG2P1;ID=exon:HG003_chrY_T0000447:1;Name=GYG2P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13268902	13269156	.	-	.	source_transcript=hg002_chrY_paternal_306.1;source_transcript_name=hg002_chrY_paternal_306.1;source_gene=hg002_chrY_paternal_306;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_306;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_306.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_306.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GYG2P1;alternative_source_transcripts=hg002_chrY_paternal_306.1,hg002_chrY_paternal_306.1;transcript_id=HG003_chrY_T0000447;gene_id=HG003_chrY_G0000181;Parent=HG003_chrY_T0000447;transcript_name=hg002_chrY_paternal_306.1;gene_name=GYG2P1;ID=intron:HG003_chrY_T0000447:1;Name=GYG2P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13269157	13269273	.	-	.	source_transcript=hg002_chrY_paternal_306.1;source_transcript_name=hg002_chrY_paternal_306.1;source_gene=hg002_chrY_paternal_306;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_306;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_306.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_306.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GYG2P1;alternative_source_transcripts=hg002_chrY_paternal_306.1,hg002_chrY_paternal_306.1;transcript_id=HG003_chrY_T0000447;gene_id=HG003_chrY_G0000181;Parent=HG003_chrY_T0000447;transcript_name=hg002_chrY_paternal_306.1;gene_name=GYG2P1;ID=exon:HG003_chrY_T0000447:2;Name=GYG2P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13269274	13282279	.	-	.	source_transcript=hg002_chrY_paternal_306.1;source_transcript_name=hg002_chrY_paternal_306.1;source_gene=hg002_chrY_paternal_306;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_306;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_306.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_306.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GYG2P1;alternative_source_transcripts=hg002_chrY_paternal_306.1,hg002_chrY_paternal_306.1;transcript_id=HG003_chrY_T0000447;gene_id=HG003_chrY_G0000181;Parent=HG003_chrY_T0000447;transcript_name=hg002_chrY_paternal_306.1;gene_name=GYG2P1;ID=intron:HG003_chrY_T0000447:2;Name=GYG2P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13282280	13282418	.	-	.	source_transcript=hg002_chrY_paternal_306.1;source_transcript_name=hg002_chrY_paternal_306.1;source_gene=hg002_chrY_paternal_306;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_306;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_306.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_306.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GYG2P1;alternative_source_transcripts=hg002_chrY_paternal_306.1,hg002_chrY_paternal_306.1;transcript_id=HG003_chrY_T0000447;gene_id=HG003_chrY_G0000181;Parent=HG003_chrY_T0000447;transcript_name=hg002_chrY_paternal_306.1;gene_name=GYG2P1;ID=exon:HG003_chrY_T0000447:3;Name=GYG2P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13282419	13283513	.	-	.	source_transcript=hg002_chrY_paternal_306.1;source_transcript_name=hg002_chrY_paternal_306.1;source_gene=hg002_chrY_paternal_306;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_306;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_306.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_306.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GYG2P1;alternative_source_transcripts=hg002_chrY_paternal_306.1,hg002_chrY_paternal_306.1;transcript_id=HG003_chrY_T0000447;gene_id=HG003_chrY_G0000181;Parent=HG003_chrY_T0000447;transcript_name=hg002_chrY_paternal_306.1;gene_name=GYG2P1;ID=intron:HG003_chrY_T0000447:3;Name=GYG2P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13283514	13283554	.	-	.	source_transcript=hg002_chrY_paternal_306.1;source_transcript_name=hg002_chrY_paternal_306.1;source_gene=hg002_chrY_paternal_306;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_306;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_306.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_306.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GYG2P1;alternative_source_transcripts=hg002_chrY_paternal_306.1,hg002_chrY_paternal_306.1;transcript_id=HG003_chrY_T0000447;gene_id=HG003_chrY_G0000181;Parent=HG003_chrY_T0000447;transcript_name=hg002_chrY_paternal_306.1;gene_name=GYG2P1;ID=exon:HG003_chrY_T0000447:4;Name=GYG2P1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	13523928	13526095	.	-	.	source_gene_common_name=LOC112268311;source_gene=hg002_chrY_paternal_311;alternative_source_transcripts=hg002_chrY_paternal_311.1,hg002_chrY_paternal_311.1;gene_id=HG003_chrY_G0000182;gene_biotype=lncRNA;gene_name=LOC112268311;gene_sources=liftoff;ID=HG003_chrY_G0000182;Name=LOC112268311
HG003_chrY	CAT	transcript	13523928	13526095	1000	-	.	source_transcript=hg002_chrY_paternal_311.1;source_transcript_name=hg002_chrY_paternal_311.1;source_gene=hg002_chrY_paternal_311;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_311;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_311.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_311.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268311;alternative_source_transcripts=hg002_chrY_paternal_311.1,hg002_chrY_paternal_311.1;transcript_id=HG003_chrY_T0000448;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_G0000182;transcript_name=hg002_chrY_paternal_311.1;gene_name=LOC112268311;ID=HG003_chrY_T0000448;Name=LOC112268311
HG003_chrY	CAT	exon	13523928	13525363	.	-	.	source_transcript=hg002_chrY_paternal_311.1;source_transcript_name=hg002_chrY_paternal_311.1;source_gene=hg002_chrY_paternal_311;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_311;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_311.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_311.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268311;alternative_source_transcripts=hg002_chrY_paternal_311.1,hg002_chrY_paternal_311.1;transcript_id=HG003_chrY_T0000448;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000448;transcript_name=hg002_chrY_paternal_311.1;gene_name=LOC112268311;ID=exon:HG003_chrY_T0000448:0;Name=LOC112268311;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13525364	13525972	.	-	.	source_transcript=hg002_chrY_paternal_311.1;source_transcript_name=hg002_chrY_paternal_311.1;source_gene=hg002_chrY_paternal_311;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_311;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_311.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_311.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268311;alternative_source_transcripts=hg002_chrY_paternal_311.1,hg002_chrY_paternal_311.1;transcript_id=HG003_chrY_T0000448;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000448;transcript_name=hg002_chrY_paternal_311.1;gene_name=LOC112268311;ID=intron:HG003_chrY_T0000448:0;Name=LOC112268311;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13525973	13526095	.	-	.	source_transcript=hg002_chrY_paternal_311.1;source_transcript_name=hg002_chrY_paternal_311.1;source_gene=hg002_chrY_paternal_311;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_311;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_311.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_311.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268311;alternative_source_transcripts=hg002_chrY_paternal_311.1,hg002_chrY_paternal_311.1;transcript_id=HG003_chrY_T0000448;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000448;transcript_name=hg002_chrY_paternal_311.1;gene_name=LOC112268311;ID=exon:HG003_chrY_T0000448:1;Name=LOC112268311;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13523928	13526104	1000	-	.	source_transcript=hg002_chrY_paternal_311.2;source_transcript_name=hg002_chrY_paternal_311.1;source_gene=hg002_chrY_paternal_311;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_311;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_311.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_311.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268311;alternative_source_transcripts=hg002_chrY_paternal_311.2,hg002_chrY_paternal_311.2;transcript_id=HG003_chrY_T0000449;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_G0000182;transcript_name=hg002_chrY_paternal_311.1;gene_name=LOC112268311;ID=HG003_chrY_T0000449;Name=LOC112268311
HG003_chrY	CAT	exon	13523928	13525363	.	-	.	source_transcript=hg002_chrY_paternal_311.2;source_transcript_name=hg002_chrY_paternal_311.1;source_gene=hg002_chrY_paternal_311;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_311;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_311.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_311.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268311;alternative_source_transcripts=hg002_chrY_paternal_311.2,hg002_chrY_paternal_311.2;transcript_id=HG003_chrY_T0000449;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000449;transcript_name=hg002_chrY_paternal_311.1;gene_name=LOC112268311;ID=exon:HG003_chrY_T0000449:0;Name=LOC112268311;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13525364	13525915	.	-	.	source_transcript=hg002_chrY_paternal_311.2;source_transcript_name=hg002_chrY_paternal_311.1;source_gene=hg002_chrY_paternal_311;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_311;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_311.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_311.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268311;alternative_source_transcripts=hg002_chrY_paternal_311.2,hg002_chrY_paternal_311.2;transcript_id=HG003_chrY_T0000449;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000449;transcript_name=hg002_chrY_paternal_311.1;gene_name=LOC112268311;ID=intron:HG003_chrY_T0000449:0;Name=LOC112268311;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13525916	13526104	.	-	.	source_transcript=hg002_chrY_paternal_311.2;source_transcript_name=hg002_chrY_paternal_311.1;source_gene=hg002_chrY_paternal_311;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_311;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_311.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_311.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268311;alternative_source_transcripts=hg002_chrY_paternal_311.2,hg002_chrY_paternal_311.2;transcript_id=HG003_chrY_T0000449;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000449;transcript_name=hg002_chrY_paternal_311.1;gene_name=LOC112268311;ID=exon:HG003_chrY_T0000449:1;Name=LOC112268311;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	13524964	13554843	.	+	.	source_gene_common_name=TTTY15;source_gene=hg002_chrY_paternal_312;alternative_source_transcripts=hg002_chrY_paternal_312.1,hg002_chrY_paternal_312.1;gene_id=HG003_chrY_G0000183;gene_biotype=lncRNA;gene_name=TTTY15;gene_sources=liftoff;ID=HG003_chrY_G0000183;Name=TTTY15
HG003_chrY	CAT	transcript	13524964	13554843	1000	+	.	source_transcript=hg002_chrY_paternal_312.1;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.1,hg002_chrY_paternal_312.1;transcript_id=HG003_chrY_T0000450;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_G0000183;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=HG003_chrY_T0000450;Name=TTTY15
HG003_chrY	CAT	exon	13524964	13525318	.	+	.	source_transcript=hg002_chrY_paternal_312.1;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.1,hg002_chrY_paternal_312.1;transcript_id=HG003_chrY_T0000450;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_T0000450;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=exon:HG003_chrY_T0000450:0;Name=TTTY15;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13525319	13527251	.	+	.	source_transcript=hg002_chrY_paternal_312.1;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.1,hg002_chrY_paternal_312.1;transcript_id=HG003_chrY_T0000450;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_T0000450;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=intron:HG003_chrY_T0000450:0;Name=TTTY15;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13527252	13527298	.	+	.	source_transcript=hg002_chrY_paternal_312.1;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.1,hg002_chrY_paternal_312.1;transcript_id=HG003_chrY_T0000450;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_T0000450;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=exon:HG003_chrY_T0000450:1;Name=TTTY15;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13527299	13549122	.	+	.	source_transcript=hg002_chrY_paternal_312.1;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.1,hg002_chrY_paternal_312.1;transcript_id=HG003_chrY_T0000450;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_T0000450;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=intron:HG003_chrY_T0000450:1;Name=TTTY15;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13549123	13549216	.	+	.	source_transcript=hg002_chrY_paternal_312.1;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.1,hg002_chrY_paternal_312.1;transcript_id=HG003_chrY_T0000450;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_T0000450;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=exon:HG003_chrY_T0000450:2;Name=TTTY15;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13549217	13550073	.	+	.	source_transcript=hg002_chrY_paternal_312.1;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.1,hg002_chrY_paternal_312.1;transcript_id=HG003_chrY_T0000450;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_T0000450;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=intron:HG003_chrY_T0000450:2;Name=TTTY15;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13550074	13554843	.	+	.	source_transcript=hg002_chrY_paternal_312.1;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.1,hg002_chrY_paternal_312.1;transcript_id=HG003_chrY_T0000450;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_T0000450;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=exon:HG003_chrY_T0000450:3;Name=TTTY15;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13524964	13554843	1000	+	.	source_transcript=hg002_chrY_paternal_312.2;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.2,hg002_chrY_paternal_312.2;transcript_id=HG003_chrY_T0000451;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_G0000183;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=HG003_chrY_T0000451;Name=TTTY15
HG003_chrY	CAT	exon	13524964	13525318	.	+	.	source_transcript=hg002_chrY_paternal_312.2;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.2,hg002_chrY_paternal_312.2;transcript_id=HG003_chrY_T0000451;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_T0000451;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=exon:HG003_chrY_T0000451:0;Name=TTTY15;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13525319	13549122	.	+	.	source_transcript=hg002_chrY_paternal_312.2;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.2,hg002_chrY_paternal_312.2;transcript_id=HG003_chrY_T0000451;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_T0000451;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=intron:HG003_chrY_T0000451:0;Name=TTTY15;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13549123	13549216	.	+	.	source_transcript=hg002_chrY_paternal_312.2;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.2,hg002_chrY_paternal_312.2;transcript_id=HG003_chrY_T0000451;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_T0000451;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=exon:HG003_chrY_T0000451:1;Name=TTTY15;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13549217	13550073	.	+	.	source_transcript=hg002_chrY_paternal_312.2;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.2,hg002_chrY_paternal_312.2;transcript_id=HG003_chrY_T0000451;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_T0000451;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=intron:HG003_chrY_T0000451:1;Name=TTTY15;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13550074	13554843	.	+	.	source_transcript=hg002_chrY_paternal_312.2;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.2,hg002_chrY_paternal_312.2;transcript_id=HG003_chrY_T0000451;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_T0000451;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=exon:HG003_chrY_T0000451:2;Name=TTTY15;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13524964	13554843	1000	+	.	source_transcript=hg002_chrY_paternal_312.3;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.3,hg002_chrY_paternal_312.3;transcript_id=HG003_chrY_T0000452;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_G0000183;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=HG003_chrY_T0000452;Name=TTTY15
HG003_chrY	CAT	exon	13524964	13525318	.	+	.	source_transcript=hg002_chrY_paternal_312.3;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.3,hg002_chrY_paternal_312.3;transcript_id=HG003_chrY_T0000452;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_T0000452;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=exon:HG003_chrY_T0000452:0;Name=TTTY15;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13525319	13549122	.	+	.	source_transcript=hg002_chrY_paternal_312.3;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.3,hg002_chrY_paternal_312.3;transcript_id=HG003_chrY_T0000452;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_T0000452;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=intron:HG003_chrY_T0000452:0;Name=TTTY15;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13549123	13549216	.	+	.	source_transcript=hg002_chrY_paternal_312.3;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.3,hg002_chrY_paternal_312.3;transcript_id=HG003_chrY_T0000452;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_T0000452;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=exon:HG003_chrY_T0000452:1;Name=TTTY15;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13549217	13550294	.	+	.	source_transcript=hg002_chrY_paternal_312.3;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.3,hg002_chrY_paternal_312.3;transcript_id=HG003_chrY_T0000452;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_T0000452;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=intron:HG003_chrY_T0000452:1;Name=TTTY15;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13550295	13554843	.	+	.	source_transcript=hg002_chrY_paternal_312.3;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.3,hg002_chrY_paternal_312.3;transcript_id=HG003_chrY_T0000452;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_T0000452;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=exon:HG003_chrY_T0000452:2;Name=TTTY15;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13524964	13554843	1000	+	.	source_transcript=hg002_chrY_paternal_312.4;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.4,hg002_chrY_paternal_312.4;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_G0000183;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=HG003_chrY_T0000453;Name=TTTY15
HG003_chrY	CAT	exon	13524964	13525318	.	+	.	source_transcript=hg002_chrY_paternal_312.4;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.4,hg002_chrY_paternal_312.4;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_T0000453;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=exon:HG003_chrY_T0000453:0;Name=TTTY15;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13525319	13527251	.	+	.	source_transcript=hg002_chrY_paternal_312.4;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.4,hg002_chrY_paternal_312.4;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_T0000453;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=intron:HG003_chrY_T0000453:0;Name=TTTY15;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13527252	13527298	.	+	.	source_transcript=hg002_chrY_paternal_312.4;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.4,hg002_chrY_paternal_312.4;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_T0000453;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=exon:HG003_chrY_T0000453:1;Name=TTTY15;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13527299	13549122	.	+	.	source_transcript=hg002_chrY_paternal_312.4;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.4,hg002_chrY_paternal_312.4;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_T0000453;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=intron:HG003_chrY_T0000453:1;Name=TTTY15;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13549123	13549216	.	+	.	source_transcript=hg002_chrY_paternal_312.4;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.4,hg002_chrY_paternal_312.4;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_T0000453;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=exon:HG003_chrY_T0000453:2;Name=TTTY15;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13549217	13550294	.	+	.	source_transcript=hg002_chrY_paternal_312.4;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.4,hg002_chrY_paternal_312.4;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_T0000453;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=intron:HG003_chrY_T0000453:2;Name=TTTY15;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13550295	13554843	.	+	.	source_transcript=hg002_chrY_paternal_312.4;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.4,hg002_chrY_paternal_312.4;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_T0000453;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=exon:HG003_chrY_T0000453:3;Name=TTTY15;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13524964	13554843	1000	+	.	source_transcript=hg002_chrY_paternal_312.5;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.5,hg002_chrY_paternal_312.5;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_G0000183;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=HG003_chrY_T0000454;Name=TTTY15
HG003_chrY	CAT	exon	13524964	13525318	.	+	.	source_transcript=hg002_chrY_paternal_312.5;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.5,hg002_chrY_paternal_312.5;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_T0000454;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=exon:HG003_chrY_T0000454:0;Name=TTTY15;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13525319	13527251	.	+	.	source_transcript=hg002_chrY_paternal_312.5;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.5,hg002_chrY_paternal_312.5;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_T0000454;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=intron:HG003_chrY_T0000454:0;Name=TTTY15;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13527252	13527298	.	+	.	source_transcript=hg002_chrY_paternal_312.5;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.5,hg002_chrY_paternal_312.5;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_T0000454;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=exon:HG003_chrY_T0000454:1;Name=TTTY15;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13527299	13549122	.	+	.	source_transcript=hg002_chrY_paternal_312.5;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.5,hg002_chrY_paternal_312.5;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_T0000454;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=intron:HG003_chrY_T0000454:1;Name=TTTY15;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13549123	13549216	.	+	.	source_transcript=hg002_chrY_paternal_312.5;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.5,hg002_chrY_paternal_312.5;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_T0000454;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=exon:HG003_chrY_T0000454:2;Name=TTTY15;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13549217	13552935	.	+	.	source_transcript=hg002_chrY_paternal_312.5;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.5,hg002_chrY_paternal_312.5;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_T0000454;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=intron:HG003_chrY_T0000454:2;Name=TTTY15;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13552936	13554843	.	+	.	source_transcript=hg002_chrY_paternal_312.5;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.5,hg002_chrY_paternal_312.5;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_T0000454;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=exon:HG003_chrY_T0000454:3;Name=TTTY15;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	13563841	13723448	.	+	.	source_gene_common_name=USP9Y;source_gene=hg002_chrY_paternal_313;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;gene_id=HG003_chrY_G0000184;gene_biotype=protein_coding;gene_name=USP9Y;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000184;Name=USP9Y
HG003_chrY	CAT	transcript	13563841	13723448	100	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_G0000184;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=HG003_chrY_T0000455;Name=USP9Y
HG003_chrY	CAT	exon	13563841	13564665	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000455:0;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13564666	13571247	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000455:0;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13571248	13571307	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000455:1;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13571308	13572001	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000455:1;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13572002	13572157	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000455:2;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13572062	13572157	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000455:0;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	13572062	13572064	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=start_codon:HG003_chrY_T0000455;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13572158	13583203	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000455:2;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13583204	13583352	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000455:3;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13583204	13583352	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000455:1;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13583353	13584721	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000455:3;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13584722	13584801	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000455:4;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13584722	13584801	.	+	1	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000455:2;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13584802	13587726	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000455:4;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13587727	13587839	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000455:5;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13587727	13587839	.	+	2	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000455:3;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13587840	13589188	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000455:5;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13589189	13589407	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000455:6;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13589189	13589407	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000455:4;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13589408	13598225	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000455:6;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13598226	13598341	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000455:7;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13598226	13598341	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000455:5;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13598342	13598611	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000455:7;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13598612	13598863	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000455:8;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13598612	13598863	.	+	1	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000455:6;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13598864	13599024	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000455:8;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13599025	13599163	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000455:9;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13599025	13599163	.	+	1	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000455:7;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13599164	13600770	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000455:9;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13600771	13600923	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000455:10;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13600771	13600923	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000455:8;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13600924	13602138	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000455:10;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13602139	13602243	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000455:11;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13602139	13602243	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000455:9;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13602244	13619805	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000455:11;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13619806	13620012	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000455:12;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13619806	13620012	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000455:10;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13620013	13621119	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000455:12;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13621120	13621256	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000455:13;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13621120	13621256	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000455:11;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13621257	13623097	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000455:13;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13623098	13623231	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000455:14;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13623098	13623231	.	+	1	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000455:12;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13623232	13633682	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000455:14;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13633683	13633770	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000455:15;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13633683	13633770	.	+	2	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000455:13;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13633771	13636197	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000455:15;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13636198	13636540	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000455:16;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13636198	13636540	.	+	1	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000455:14;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13636541	13638085	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000455:16;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13638086	13638181	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000455:17;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13638086	13638181	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000455:15;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13638182	13639263	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000455:17;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13639264	13639475	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000455:18;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13639264	13639475	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000455:16;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13639476	13640633	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000455:18;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13640634	13640874	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000455:19;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13640634	13640874	.	+	1	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000455:17;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13640875	13641220	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000455:19;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13641221	13641370	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000455:20;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13641221	13641370	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000455:18;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13641371	13642140	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000455:20;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13642141	13642261	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000455:21;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13642141	13642261	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000455:19;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13642262	13648817	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000455:21;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13648818	13648948	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000455:22;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13648818	13648948	.	+	2	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000455:20;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13648949	13649135	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000455:22;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13649136	13649414	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000455:23;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13649136	13649414	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000455:21;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13649415	13653020	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000455:23;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13653021	13653146	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000455:24;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13653021	13653146	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000455:22;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13653147	13654112	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000455:24;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13654113	13654238	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000455:25;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13654113	13654238	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000455:23;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13654239	13655645	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000455:25;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13655646	13655815	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000455:26;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13655646	13655815	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000455:24;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13655816	13672792	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000455:26;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13672793	13672901	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000455:27;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13672793	13672901	.	+	1	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000455:25;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13672902	13673285	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000455:27;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13673286	13673432	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000455:28;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13673286	13673432	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000455:26;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13673433	13674248	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000455:28;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13674249	13674395	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000455:29;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13674249	13674395	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000455:27;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13674396	13675443	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000455:29;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13675444	13675666	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000455:30;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13675444	13675666	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000455:28;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13675667	13678737	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000455:30;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13678738	13678958	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000455:31;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13678738	13678958	.	+	2	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000455:29;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13678959	13681033	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000455:31;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13681034	13681224	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000455:32;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13681034	13681224	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000455:30;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13681225	13696298	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000455:32;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13696299	13696472	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000455:33;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13696299	13696472	.	+	1	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000455:31;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13696473	13700521	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000455:33;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13700522	13700663	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000455:34;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13700522	13700663	.	+	1	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000455:32;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13700664	13702474	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000455:34;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13702475	13703225	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000455:35;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13702475	13703225	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000455:33;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13703226	13703620	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000455:35;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13703621	13703744	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000455:36;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13703621	13703744	.	+	2	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000455:34;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13703745	13704848	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000455:36;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13704849	13705074	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000455:37;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13704849	13705074	.	+	1	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000455:35;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13705075	13705672	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000455:37;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13705673	13705802	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000455:38;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13705673	13705802	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000455:36;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13705803	13708941	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000455:38;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13708942	13709127	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000455:39;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13708942	13709127	.	+	2	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000455:37;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13709128	13709541	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000455:39;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13709542	13709762	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000455:40;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13709542	13709762	.	+	2	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000455:38;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13709763	13709847	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000455:40;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13709848	13709936	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000455:41;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13709848	13709936	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000455:39;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13709937	13718948	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000455:41;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13718949	13719105	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000455:42;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13718949	13719105	.	+	1	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000455:40;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13719106	13719241	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000455:42;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13719242	13719454	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000455:43;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13719242	13719454	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000455:41;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13719455	13720174	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000455:43;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13720175	13720270	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000455:44;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13720175	13720270	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000455:42;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13720271	13721887	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000455:44;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13721888	13723448	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000455:45;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13721888	13722025	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000455:43;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	13722023	13722025	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000455;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=stop_codon:HG003_chrY_T0000455;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13570467	13723448	100	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_G0000184;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=HG003_chrY_T0000456;Name=USP9Y
HG003_chrY	CAT	exon	13570467	13570495	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000456:0;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13570496	13571247	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000456:0;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13571248	13571307	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000456:1;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13571308	13572001	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000456:1;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13572002	13572157	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000456:2;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13572062	13572157	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000456:0;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	13572062	13572064	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=start_codon:HG003_chrY_T0000456;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13572158	13583203	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000456:2;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13583204	13583352	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000456:3;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13583204	13583352	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000456:1;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13583353	13584721	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000456:3;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13584722	13584801	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000456:4;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13584722	13584801	.	+	1	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000456:2;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13584802	13587726	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000456:4;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13587727	13587839	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000456:5;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13587727	13587839	.	+	2	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000456:3;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13587840	13589188	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000456:5;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13589189	13589407	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000456:6;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13589189	13589407	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000456:4;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13589408	13598225	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000456:6;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13598226	13598341	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000456:7;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13598226	13598341	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000456:5;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13598342	13598611	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000456:7;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13598612	13598863	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000456:8;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13598612	13598863	.	+	1	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000456:6;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13598864	13599024	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000456:8;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13599025	13599163	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000456:9;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13599025	13599163	.	+	1	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000456:7;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13599164	13600770	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000456:9;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13600771	13600923	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000456:10;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13600771	13600923	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000456:8;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13600924	13602138	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000456:10;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13602139	13602243	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000456:11;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13602139	13602243	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000456:9;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13602244	13619805	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000456:11;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13619806	13620012	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000456:12;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13619806	13620012	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000456:10;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13620013	13621119	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000456:12;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13621120	13621256	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000456:13;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13621120	13621256	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000456:11;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13621257	13623097	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000456:13;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13623098	13623231	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000456:14;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13623098	13623231	.	+	1	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000456:12;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13623232	13633682	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000456:14;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13633683	13633770	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000456:15;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13633683	13633770	.	+	2	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000456:13;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13633771	13636197	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000456:15;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13636198	13636540	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000456:16;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13636198	13636540	.	+	1	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000456:14;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13636541	13638085	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000456:16;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13638086	13638181	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000456:17;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13638086	13638181	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000456:15;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13638182	13639263	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000456:17;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13639264	13639475	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000456:18;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13639264	13639475	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000456:16;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13639476	13640633	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000456:18;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13640634	13640874	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000456:19;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13640634	13640874	.	+	1	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000456:17;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13640875	13641220	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000456:19;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13641221	13641370	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000456:20;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13641221	13641370	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000456:18;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13641371	13642140	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000456:20;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13642141	13642261	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000456:21;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13642141	13642261	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000456:19;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13642262	13648817	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000456:21;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13648818	13648948	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000456:22;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13648818	13648948	.	+	2	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000456:20;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13648949	13649135	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000456:22;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13649136	13649414	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000456:23;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13649136	13649414	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000456:21;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13649415	13653020	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000456:23;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13653021	13653146	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000456:24;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13653021	13653146	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000456:22;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13653147	13654112	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000456:24;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13654113	13654238	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000456:25;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13654113	13654238	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000456:23;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13654239	13655645	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000456:25;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13655646	13655815	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000456:26;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13655646	13655815	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000456:24;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13655816	13672792	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000456:26;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13672793	13672901	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000456:27;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13672793	13672901	.	+	1	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000456:25;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13672902	13673285	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000456:27;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13673286	13673432	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000456:28;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13673286	13673432	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000456:26;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13673433	13674248	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000456:28;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13674249	13674395	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000456:29;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13674249	13674395	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000456:27;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13674396	13675443	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000456:29;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13675444	13675666	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000456:30;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13675444	13675666	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000456:28;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13675667	13678737	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000456:30;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13678738	13678958	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000456:31;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13678738	13678958	.	+	2	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000456:29;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13678959	13681033	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000456:31;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13681034	13681224	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000456:32;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13681034	13681224	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000456:30;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13681225	13696298	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000456:32;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13696299	13696472	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000456:33;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13696299	13696472	.	+	1	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000456:31;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13696473	13700521	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000456:33;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13700522	13700663	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000456:34;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13700522	13700663	.	+	1	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000456:32;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13700664	13702474	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000456:34;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13702475	13703225	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000456:35;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13702475	13703225	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000456:33;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13703226	13703620	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000456:35;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13703621	13703744	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000456:36;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13703621	13703744	.	+	2	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000456:34;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13703745	13704848	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000456:36;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13704849	13705074	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000456:37;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13704849	13705074	.	+	1	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000456:35;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13705075	13705672	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000456:37;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13705673	13705802	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000456:38;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13705673	13705802	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000456:36;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13705803	13708941	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000456:38;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13708942	13709127	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000456:39;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13708942	13709127	.	+	2	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000456:37;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13709128	13709541	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000456:39;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13709542	13709762	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000456:40;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13709542	13709762	.	+	2	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000456:38;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13709763	13709847	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000456:40;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13709848	13709936	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000456:41;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13709848	13709936	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000456:39;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13709937	13718948	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000456:41;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13718949	13719105	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000456:42;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13718949	13719105	.	+	1	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000456:40;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13719106	13719241	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000456:42;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13719242	13719454	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000456:43;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13719242	13719454	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000456:41;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13719455	13720174	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000456:43;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13720175	13720270	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000456:44;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13720175	13720270	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000456:42;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13720271	13721887	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000456:44;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13721888	13723448	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000456:45;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13721888	13722025	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000456:43;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	13722023	13722025	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000456;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=stop_codon:HG003_chrY_T0000456;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13572070	13723448	100	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_G0000184;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=HG003_chrY_T0000457;Name=USP9Y
HG003_chrY	CAT	exon	13572070	13572157	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000457:0;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13572158	13577253	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000457:0;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13577254	13577404	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000457:1;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13577405	13583203	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000457:1;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13583204	13583352	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000457:2;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13583342	13583352	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000457:0;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	13583342	13583344	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=start_codon:HG003_chrY_T0000457;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13583353	13584721	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000457:2;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13584722	13584801	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000457:3;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13584722	13584801	.	+	1	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000457:1;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13584802	13587726	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000457:3;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13587727	13587839	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000457:4;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13587727	13587839	.	+	2	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000457:2;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13587840	13589188	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000457:4;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13589189	13589407	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000457:5;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13589189	13589407	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000457:3;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13589408	13598225	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000457:5;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13598226	13598341	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000457:6;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13598226	13598341	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000457:4;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13598342	13598611	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000457:6;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13598612	13598863	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000457:7;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13598612	13598863	.	+	1	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000457:5;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13598864	13599024	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000457:7;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13599025	13599163	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000457:8;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13599025	13599163	.	+	1	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000457:6;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13599164	13600770	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000457:8;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13600771	13600923	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000457:9;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13600771	13600923	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000457:7;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13600924	13602138	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000457:9;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13602139	13602243	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000457:10;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13602139	13602243	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000457:8;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13602244	13619805	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000457:10;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13619806	13620012	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000457:11;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13619806	13620012	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000457:9;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13620013	13621119	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000457:11;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13621120	13621256	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000457:12;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13621120	13621256	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000457:10;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13621257	13623097	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000457:12;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13623098	13623231	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000457:13;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13623098	13623231	.	+	1	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000457:11;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13623232	13633682	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000457:13;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13633683	13633770	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000457:14;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13633683	13633770	.	+	2	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000457:12;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13633771	13636197	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000457:14;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13636198	13636540	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000457:15;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13636198	13636540	.	+	1	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000457:13;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13636541	13638085	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000457:15;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13638086	13638181	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000457:16;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13638086	13638181	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000457:14;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13638182	13639263	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000457:16;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13639264	13639475	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000457:17;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13639264	13639475	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000457:15;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13639476	13640633	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000457:17;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13640634	13640874	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000457:18;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13640634	13640874	.	+	1	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000457:16;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13640875	13641220	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000457:18;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13641221	13641370	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000457:19;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13641221	13641370	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000457:17;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13641371	13642140	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000457:19;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13642141	13642261	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000457:20;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13642141	13642261	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000457:18;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13642262	13648817	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000457:20;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13648818	13648948	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000457:21;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13648818	13648948	.	+	2	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000457:19;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13648949	13649135	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000457:21;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13649136	13649414	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000457:22;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13649136	13649414	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000457:20;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13649415	13653020	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000457:22;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13653021	13653146	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000457:23;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13653021	13653146	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000457:21;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13653147	13654112	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000457:23;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13654113	13654238	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000457:24;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13654113	13654238	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000457:22;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13654239	13655645	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000457:24;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13655646	13655815	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000457:25;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13655646	13655815	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000457:23;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13655816	13672792	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000457:25;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13672793	13672901	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000457:26;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13672793	13672901	.	+	1	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000457:24;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13672902	13673285	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000457:26;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13673286	13673432	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000457:27;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13673286	13673432	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000457:25;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13673433	13674248	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000457:27;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13674249	13674395	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000457:28;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13674249	13674395	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000457:26;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13674396	13675443	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000457:28;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13675444	13675666	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000457:29;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13675444	13675666	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000457:27;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13675667	13678737	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000457:29;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13678738	13678958	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000457:30;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13678738	13678958	.	+	2	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000457:28;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13678959	13681033	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000457:30;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13681034	13681224	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000457:31;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13681034	13681224	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000457:29;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13681225	13696298	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000457:31;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13696299	13696472	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000457:32;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13696299	13696472	.	+	1	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000457:30;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13696473	13700521	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000457:32;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13700522	13700663	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000457:33;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13700522	13700663	.	+	1	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000457:31;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13700664	13702474	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000457:33;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13702475	13703225	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000457:34;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13702475	13703225	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000457:32;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13703226	13703620	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000457:34;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13703621	13703744	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000457:35;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13703621	13703744	.	+	2	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000457:33;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13703745	13704848	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000457:35;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13704849	13705074	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000457:36;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13704849	13705074	.	+	1	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000457:34;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13705075	13705672	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000457:36;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13705673	13705802	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000457:37;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13705673	13705802	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000457:35;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13705803	13708941	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000457:37;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13708942	13709127	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000457:38;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13708942	13709127	.	+	2	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000457:36;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13709128	13709541	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000457:38;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13709542	13709762	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000457:39;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13709542	13709762	.	+	2	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000457:37;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13709763	13709847	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000457:39;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13709848	13709936	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000457:40;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13709848	13709936	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000457:38;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13709937	13718948	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000457:40;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13718949	13719105	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000457:41;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13718949	13719105	.	+	1	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000457:39;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13719106	13719241	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000457:41;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13719242	13719454	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000457:42;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13719242	13719454	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000457:40;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13719455	13720174	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000457:42;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13720175	13720270	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000457:43;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13720175	13720270	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000457:41;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13720271	13721887	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:HG003_chrY_T0000457:43;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13721888	13723448	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:HG003_chrY_T0000457:44;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13721888	13722025	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:HG003_chrY_T0000457:42;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	13722023	13722025	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000457;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=stop_codon:HG003_chrY_T0000457;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	13767474	13783084	.	+	.	source_gene_common_name=DDX3Y;source_gene=hg002_chrY_paternal_315;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;gene_id=HG003_chrY_G0000185;gene_biotype=protein_coding;gene_name=DDX3Y;gene_sources=liftoff,augTM,transMap;ID=HG003_chrY_G0000185;Name=DDX3Y
HG003_chrY	CAT	transcript	13767474	13783084	1000	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000458;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_G0000185;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=HG003_chrY_T0000458;Name=DDX3Y
HG003_chrY	CAT	exon	13767474	13767587	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000458;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000458;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000458:0;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13767588	13770142	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000458;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000458;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000458:0;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13770143	13770200	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000458;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000458;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000458:1;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13770201	13771965	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000458;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000458;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000458:1;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13771966	13772013	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000458;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000458;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000458:2;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13772014	13774444	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000458;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000458;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000458:2;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13774445	13774574	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000458;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000458;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000458:3;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13774575	13775332	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000458;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000458;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000458:3;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13775333	13775668	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000458;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000458;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000458:4;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13775669	13776323	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000458;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000458;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000458:4;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13776324	13776459	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000458;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000458;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000458:5;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13776460	13777169	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000458;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000458;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000458:5;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13777170	13777833	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000458;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000458;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000458:6;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13777834	13778235	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000458;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000458;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000458:6;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13778236	13778380	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000458;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000458;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000458:7;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13778381	13778488	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000458;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000458;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000458:7;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13778489	13778633	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000458;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000458;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000458:8;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13778634	13778866	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000458;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000458;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000458:8;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13778867	13779240	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000458;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000458;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000458:9;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13779241	13779512	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000458;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000458;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000458:9;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13779513	13779666	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000458;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000458;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000458:10;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13779667	13780008	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000458;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000458;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000458:10;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13780009	13780148	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000458;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000458;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000458:11;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13780149	13780648	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000458;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000458;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000458:11;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13780649	13783084	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000458;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000458;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000458:12;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13767474	13783084	1000	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000459;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_G0000185;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=HG003_chrY_T0000459;Name=DDX3Y
HG003_chrY	CAT	exon	13767474	13767587	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000459;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000459;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000459:0;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13767588	13770142	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000459;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000459;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000459:0;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13770143	13770200	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000459;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000459;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000459:1;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13770201	13771965	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000459;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000459;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000459:1;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13771966	13772013	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000459;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000459;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000459:2;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13772014	13774444	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000459;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000459;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000459:2;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13774445	13774574	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000459;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000459;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000459:3;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13774575	13775332	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000459;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000459;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000459:3;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13775333	13775668	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000459;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000459;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000459:4;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13775669	13776323	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000459;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000459;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000459:4;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13776324	13776459	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000459;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000459;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000459:5;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13776460	13777169	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000459;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000459;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000459:5;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13777170	13777255	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000459;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000459;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000459:6;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13777256	13777489	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000459;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000459;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000459:6;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13777490	13777588	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000459;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000459;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000459:7;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13777589	13777672	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000459;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000459;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000459:7;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13777673	13777833	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000459;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000459;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000459:8;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13777834	13778235	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000459;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000459;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000459:8;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13778236	13778380	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000459;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000459;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000459:9;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13778381	13778488	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000459;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000459;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000459:9;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13778489	13778633	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000459;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000459;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000459:10;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13778634	13778866	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000459;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000459;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000459:10;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13778867	13779240	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000459;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000459;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000459:11;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13779241	13779512	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000459;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000459;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000459:11;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13779513	13779666	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000459;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000459;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000459:12;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13779667	13780008	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000459;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000459;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000459:12;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13780009	13780148	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000459;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000459;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000459:13;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13780149	13780648	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000459;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000459;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000459:13;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13780649	13783084	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000459;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000459;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000459:14;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13767474	13783084	1000	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000460;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_G0000185;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=HG003_chrY_T0000460;Name=DDX3Y
HG003_chrY	CAT	exon	13767474	13767587	.	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000460;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000460;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000460:0;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13767588	13770142	.	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000460;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000460;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000460:0;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13770143	13770200	.	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000460;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000460;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000460:1;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13770201	13771965	.	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000460;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000460;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000460:1;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13771966	13772013	.	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000460;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000460;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000460:2;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13772014	13775332	.	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000460;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000460;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000460:2;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13775333	13775668	.	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000460;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000460;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000460:3;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13775669	13776323	.	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000460;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000460;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000460:3;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13776324	13776459	.	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000460;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000460;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000460:4;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13776460	13777169	.	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000460;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000460;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000460:4;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13777170	13777833	.	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000460;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000460;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000460:5;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13777834	13778235	.	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000460;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000460;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000460:5;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13778236	13778380	.	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000460;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000460;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000460:6;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13778381	13778488	.	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000460;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000460;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000460:6;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13778489	13778633	.	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000460;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000460;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000460:7;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13778634	13778866	.	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000460;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000460;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000460:7;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13778867	13779240	.	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000460;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000460;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000460:8;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13779241	13779512	.	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000460;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000460;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000460:8;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13779513	13779666	.	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000460;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000460;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000460:9;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13779667	13780008	.	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000460;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000460;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000460:9;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13780009	13780148	.	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000460;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000460;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000460:10;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13780149	13780648	.	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000460;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000460;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000460:10;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13780649	13783084	.	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000460;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000460;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000460:11;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13767474	13783084	1000	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000461;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_G0000185;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=HG003_chrY_T0000461;Name=DDX3Y
HG003_chrY	CAT	exon	13767474	13767587	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000461;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000461;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000461:0;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13767588	13770142	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000461;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000461;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000461:0;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13770143	13770200	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000461;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000461;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000461:1;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13770201	13771965	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000461;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000461;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000461:1;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13771966	13772013	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000461;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000461;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000461:2;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13772014	13774444	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000461;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000461;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000461:2;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13774445	13774574	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000461;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000461;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000461:3;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13774575	13775332	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000461;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000461;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000461:3;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13775333	13775668	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000461;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000461;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000461:4;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13775669	13776323	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000461;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000461;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000461:4;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13776324	13776459	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000461;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000461;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000461:5;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13776460	13777169	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000461;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000461;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000461:5;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13777170	13777833	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000461;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000461;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000461:6;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13777834	13778235	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000461;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000461;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000461:6;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13778236	13778380	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000461;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000461;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000461:7;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13778381	13778488	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000461;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000461;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000461:7;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13778489	13778633	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000461;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000461;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000461:8;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13778634	13778866	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000461;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000461;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000461:8;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13778867	13779240	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000461;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000461;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000461:9;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13779241	13779581	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000461;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000461;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000461:9;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13779582	13779666	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000461;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000461;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000461:10;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13779667	13780008	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000461;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000461;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000461:10;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13780009	13780148	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000461;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000461;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000461:11;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13780149	13780648	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000461;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000461;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000461:11;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13780649	13783084	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000461;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000461;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000461:12;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13767474	13783084	1000	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000462;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_G0000185;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=HG003_chrY_T0000462;Name=DDX3Y
HG003_chrY	CAT	exon	13767474	13767587	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000462;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000462;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000462:0;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13767588	13770142	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000462;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000462;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000462:0;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13770143	13770200	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000462;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000462;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000462:1;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13770201	13771965	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000462;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000462;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000462:1;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13771966	13772013	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000462;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000462;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000462:2;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13772014	13774444	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000462;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000462;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000462:2;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13774445	13774574	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000462;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000462;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000462:3;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13774575	13775332	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000462;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000462;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000462:3;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13775333	13775668	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000462;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000462;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000462:4;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13775669	13776323	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000462;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000462;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000462:4;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13776324	13776459	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000462;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000462;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000462:5;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13776460	13777169	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000462;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000462;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000462:5;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13777170	13777255	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000462;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000462;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000462:6;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13777256	13777489	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000462;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000462;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000462:6;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13777490	13777588	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000462;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000462;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000462:7;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13777589	13777689	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000462;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000462;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000462:7;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13777690	13777833	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000462;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000462;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000462:8;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13777834	13778235	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000462;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000462;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000462:8;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13778236	13778380	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000462;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000462;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000462:9;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13778381	13778488	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000462;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000462;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000462:9;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13778489	13778633	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000462;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000462;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000462:10;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13778634	13778866	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000462;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000462;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000462:10;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13778867	13779240	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000462;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000462;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000462:11;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13779241	13779512	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000462;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000462;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000462:11;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13779513	13779666	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000462;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000462;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000462:12;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13779667	13780008	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000462;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000462;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000462:12;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13780009	13780148	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000462;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000462;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000462:13;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13780149	13780648	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000462;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000462;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000462:13;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13780649	13783084	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000462;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000462;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000462:14;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13768311	13783084	1000	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000463;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_G0000185;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=HG003_chrY_T0000463;Name=DDX3Y
HG003_chrY	CAT	exon	13768311	13768421	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000463;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000463;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000463:0;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13768422	13770142	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000463;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000463;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000463:0;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13770143	13770200	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000463;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000463;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000463:1;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13770201	13771965	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000463;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000463;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000463:1;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13771966	13772013	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000463;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000463;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000463:2;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13772014	13774444	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000463;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000463;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000463:2;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13774445	13774574	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000463;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000463;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000463:3;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13774575	13775332	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000463;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000463;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000463:3;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13775333	13775668	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000463;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000463;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000463:4;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13775669	13776323	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000463;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000463;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000463:4;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13776324	13776459	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000463;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000463;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000463:5;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13776460	13777169	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000463;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000463;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000463:5;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13777170	13777255	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000463;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000463;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000463:6;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13777256	13777489	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000463;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000463;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000463:6;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13777490	13777588	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000463;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000463;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000463:7;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13777589	13777672	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000463;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000463;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000463:7;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13777673	13777833	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000463;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000463;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000463:8;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13777834	13778235	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000463;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000463;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000463:8;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13778236	13778380	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000463;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000463;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000463:9;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13778381	13778488	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000463;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000463;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000463:9;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13778489	13778633	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000463;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000463;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000463:10;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13778634	13778866	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000463;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000463;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000463:10;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13778867	13779240	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000463;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000463;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000463:11;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13779241	13779512	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000463;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000463;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000463:11;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13779513	13779666	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000463;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000463;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000463:12;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13779667	13780008	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000463;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000463;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000463:12;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13780009	13780148	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000463;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000463;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000463:13;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13780149	13780648	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000463;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000463;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000463:13;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13780649	13783084	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000463;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000463;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000463:14;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13768311	13783084	1000	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000464;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_G0000185;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=HG003_chrY_T0000464;Name=DDX3Y
HG003_chrY	CAT	exon	13768311	13768421	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000464;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000464;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000464:0;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13768422	13770142	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000464;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000464;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000464:0;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13770143	13770200	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000464;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000464;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000464:1;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13770201	13771965	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000464;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000464;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000464:1;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13771966	13772013	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000464;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000464;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000464:2;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13772014	13774444	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000464;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000464;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000464:2;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13774445	13774574	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000464;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000464;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000464:3;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13774575	13775332	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000464;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000464;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000464:3;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13775333	13775668	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000464;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000464;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000464:4;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13775669	13776323	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000464;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000464;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000464:4;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13776324	13776459	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000464;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000464;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000464:5;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13776460	13777169	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000464;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000464;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000464:5;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13777170	13777833	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000464;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000464;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000464:6;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13777834	13778235	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000464;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000464;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000464:6;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13778236	13778380	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000464;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000464;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000464:7;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13778381	13778488	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000464;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000464;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000464:7;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13778489	13778633	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000464;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000464;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000464:8;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13778634	13778866	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000464;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000464;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000464:8;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13778867	13779240	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000464;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000464;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000464:9;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13779241	13779512	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000464;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000464;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000464:9;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13779513	13779666	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000464;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000464;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000464:10;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13779667	13780008	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000464;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000464;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000464:10;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13780009	13780148	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000464;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000464;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000464:11;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13780149	13780648	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000464;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000464;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000464:11;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13780649	13783084	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000464;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000464;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000464:12;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13770175	13783084	9960	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000465;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_G0000185;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=HG003_chrY_T0000465;Name=DDX3Y
HG003_chrY	CAT	exon	13770175	13770200	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000465;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000465;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000465:0;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13770201	13771965	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000465;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000465;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000465:0;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13771966	13772013	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000465;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000465;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000465:1;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13772014	13775332	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000465;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000465;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000465:1;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13775333	13775668	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000465;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000465;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000465:2;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13775669	13776323	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000465;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000465;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000465:2;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13776324	13776459	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000465;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000465;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000465:3;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13776339	13776459	.	+	0	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000465;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000465;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0000465:0;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	13776339	13776341	.	+	0	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000465;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000465;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=start_codon:HG003_chrY_T0000465;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13776460	13777169	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000465;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000465;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000465:3;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13777170	13777255	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000465;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000465;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000465:4;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13777170	13777255	.	+	2	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000465;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000465;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0000465:1;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13777256	13777489	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000465;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000465;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000465:4;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13777490	13777588	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000465;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000465;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000465:5;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13777490	13777588	.	+	0	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000465;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000465;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0000465:2;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13777589	13777672	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000465;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000465;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000465:5;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13777673	13777833	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000465;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000465;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000465:6;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13777673	13777833	.	+	0	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000465;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000465;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0000465:3;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13777834	13778235	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000465;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000465;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000465:6;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13778236	13778380	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000465;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000465;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000465:7;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13778236	13778380	.	+	1	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000465;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000465;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0000465:4;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13778381	13778488	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000465;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000465;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000465:7;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13778489	13778633	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000465;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000465;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000465:8;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13778489	13778633	.	+	0	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000465;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000465;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0000465:5;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13778634	13778866	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000465;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000465;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000465:8;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13778867	13779048	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000465;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000465;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000465:9;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13778867	13779048	.	+	2	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000465;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000465;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0000465:6;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13779049	13779122	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000465;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000465;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000465:9;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13779123	13779240	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000465;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000465;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000465:10;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13779123	13779240	.	+	0	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000465;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000465;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0000465:7;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13779241	13779512	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000465;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000465;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000465:10;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13779513	13779666	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000465;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000465;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000465:11;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13779513	13779666	.	+	2	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000465;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000465;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0000465:8;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13779667	13780008	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000465;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000465;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000465:11;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13780009	13780148	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000465;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000465;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000465:12;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13780009	13780148	.	+	1	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000465;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000465;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0000465:9;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13780149	13780648	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000465;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000465;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=intron:HG003_chrY_T0000465:12;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13780649	13783084	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000465;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000465;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=exon:HG003_chrY_T0000465:13;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13780649	13780728	.	+	2	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000465;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000465;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0000465:10;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	13780726	13780728	.	+	0	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000465;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000465;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=stop_codon:HG003_chrY_T0000465;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	13973931	13986683	.	+	.	source_gene_common_name=LOC112268312;source_gene=hg002_chrY_paternal_318;alternative_source_transcripts=hg002_chrY_paternal_318.1,hg002_chrY_paternal_318.1;gene_id=HG003_chrY_G0000186;gene_biotype=lncRNA;gene_name=LOC112268312;gene_sources=liftoff;ID=HG003_chrY_G0000186;Name=LOC112268312
HG003_chrY	CAT	transcript	13973931	13981492	1000	+	.	source_transcript=hg002_chrY_paternal_318.1;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_318.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;alternative_source_transcripts=hg002_chrY_paternal_318.1,hg002_chrY_paternal_318.1;transcript_id=HG003_chrY_T0000466;gene_id=HG003_chrY_G0000186;Parent=HG003_chrY_G0000186;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=HG003_chrY_T0000466;Name=LOC112268312
HG003_chrY	CAT	exon	13973931	13974019	.	+	.	source_transcript=hg002_chrY_paternal_318.1;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_318.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;alternative_source_transcripts=hg002_chrY_paternal_318.1,hg002_chrY_paternal_318.1;transcript_id=HG003_chrY_T0000466;gene_id=HG003_chrY_G0000186;Parent=HG003_chrY_T0000466;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=exon:HG003_chrY_T0000466:0;Name=LOC112268312;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13974020	13974205	.	+	.	source_transcript=hg002_chrY_paternal_318.1;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_318.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;alternative_source_transcripts=hg002_chrY_paternal_318.1,hg002_chrY_paternal_318.1;transcript_id=HG003_chrY_T0000466;gene_id=HG003_chrY_G0000186;Parent=HG003_chrY_T0000466;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=intron:HG003_chrY_T0000466:0;Name=LOC112268312;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13974206	13974368	.	+	.	source_transcript=hg002_chrY_paternal_318.1;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_318.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;alternative_source_transcripts=hg002_chrY_paternal_318.1,hg002_chrY_paternal_318.1;transcript_id=HG003_chrY_T0000466;gene_id=HG003_chrY_G0000186;Parent=HG003_chrY_T0000466;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=exon:HG003_chrY_T0000466:1;Name=LOC112268312;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13974369	13980293	.	+	.	source_transcript=hg002_chrY_paternal_318.1;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_318.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;alternative_source_transcripts=hg002_chrY_paternal_318.1,hg002_chrY_paternal_318.1;transcript_id=HG003_chrY_T0000466;gene_id=HG003_chrY_G0000186;Parent=HG003_chrY_T0000466;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=intron:HG003_chrY_T0000466:1;Name=LOC112268312;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13980294	13981492	.	+	.	source_transcript=hg002_chrY_paternal_318.1;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_318.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;alternative_source_transcripts=hg002_chrY_paternal_318.1,hg002_chrY_paternal_318.1;transcript_id=HG003_chrY_T0000466;gene_id=HG003_chrY_G0000186;Parent=HG003_chrY_T0000466;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=exon:HG003_chrY_T0000466:2;Name=LOC112268312;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13973931	13986683	1000	+	.	source_transcript=hg002_chrY_paternal_318.2;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_318.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;alternative_source_transcripts=hg002_chrY_paternal_318.2,hg002_chrY_paternal_318.2;transcript_id=HG003_chrY_T0000467;gene_id=HG003_chrY_G0000186;Parent=HG003_chrY_G0000186;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=HG003_chrY_T0000467;Name=LOC112268312
HG003_chrY	CAT	exon	13973931	13974019	.	+	.	source_transcript=hg002_chrY_paternal_318.2;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_318.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;alternative_source_transcripts=hg002_chrY_paternal_318.2,hg002_chrY_paternal_318.2;transcript_id=HG003_chrY_T0000467;gene_id=HG003_chrY_G0000186;Parent=HG003_chrY_T0000467;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=exon:HG003_chrY_T0000467:0;Name=LOC112268312;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13974020	13974205	.	+	.	source_transcript=hg002_chrY_paternal_318.2;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_318.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;alternative_source_transcripts=hg002_chrY_paternal_318.2,hg002_chrY_paternal_318.2;transcript_id=HG003_chrY_T0000467;gene_id=HG003_chrY_G0000186;Parent=HG003_chrY_T0000467;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=intron:HG003_chrY_T0000467:0;Name=LOC112268312;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13974206	13974368	.	+	.	source_transcript=hg002_chrY_paternal_318.2;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_318.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;alternative_source_transcripts=hg002_chrY_paternal_318.2,hg002_chrY_paternal_318.2;transcript_id=HG003_chrY_T0000467;gene_id=HG003_chrY_G0000186;Parent=HG003_chrY_T0000467;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=exon:HG003_chrY_T0000467:1;Name=LOC112268312;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13974369	13980293	.	+	.	source_transcript=hg002_chrY_paternal_318.2;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_318.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;alternative_source_transcripts=hg002_chrY_paternal_318.2,hg002_chrY_paternal_318.2;transcript_id=HG003_chrY_T0000467;gene_id=HG003_chrY_G0000186;Parent=HG003_chrY_T0000467;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=intron:HG003_chrY_T0000467:1;Name=LOC112268312;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13980294	13980429	.	+	.	source_transcript=hg002_chrY_paternal_318.2;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_318.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;alternative_source_transcripts=hg002_chrY_paternal_318.2,hg002_chrY_paternal_318.2;transcript_id=HG003_chrY_T0000467;gene_id=HG003_chrY_G0000186;Parent=HG003_chrY_T0000467;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=exon:HG003_chrY_T0000467:2;Name=LOC112268312;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13980430	13986316	.	+	.	source_transcript=hg002_chrY_paternal_318.2;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_318.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;alternative_source_transcripts=hg002_chrY_paternal_318.2,hg002_chrY_paternal_318.2;transcript_id=HG003_chrY_T0000467;gene_id=HG003_chrY_G0000186;Parent=HG003_chrY_T0000467;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=intron:HG003_chrY_T0000467:2;Name=LOC112268312;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13986317	13986683	.	+	.	source_transcript=hg002_chrY_paternal_318.2;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_318.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;alternative_source_transcripts=hg002_chrY_paternal_318.2,hg002_chrY_paternal_318.2;transcript_id=HG003_chrY_T0000467;gene_id=HG003_chrY_G0000186;Parent=HG003_chrY_T0000467;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=exon:HG003_chrY_T0000467:3;Name=LOC112268312;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13974053	13981492	1000	+	.	source_transcript=hg002_chrY_paternal_318.3;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_318.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;alternative_source_transcripts=hg002_chrY_paternal_318.3,hg002_chrY_paternal_318.3;transcript_id=HG003_chrY_T0000468;gene_id=HG003_chrY_G0000186;Parent=HG003_chrY_G0000186;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=HG003_chrY_T0000468;Name=LOC112268312
HG003_chrY	CAT	exon	13974053	13974071	.	+	.	source_transcript=hg002_chrY_paternal_318.3;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_318.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;alternative_source_transcripts=hg002_chrY_paternal_318.3,hg002_chrY_paternal_318.3;transcript_id=HG003_chrY_T0000468;gene_id=HG003_chrY_G0000186;Parent=HG003_chrY_T0000468;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=exon:HG003_chrY_T0000468:0;Name=LOC112268312;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13974072	13974205	.	+	.	source_transcript=hg002_chrY_paternal_318.3;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_318.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;alternative_source_transcripts=hg002_chrY_paternal_318.3,hg002_chrY_paternal_318.3;transcript_id=HG003_chrY_T0000468;gene_id=HG003_chrY_G0000186;Parent=HG003_chrY_T0000468;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=intron:HG003_chrY_T0000468:0;Name=LOC112268312;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13974206	13974368	.	+	.	source_transcript=hg002_chrY_paternal_318.3;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_318.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;alternative_source_transcripts=hg002_chrY_paternal_318.3,hg002_chrY_paternal_318.3;transcript_id=HG003_chrY_T0000468;gene_id=HG003_chrY_G0000186;Parent=HG003_chrY_T0000468;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=exon:HG003_chrY_T0000468:1;Name=LOC112268312;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13974369	13980293	.	+	.	source_transcript=hg002_chrY_paternal_318.3;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_318.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;alternative_source_transcripts=hg002_chrY_paternal_318.3,hg002_chrY_paternal_318.3;transcript_id=HG003_chrY_T0000468;gene_id=HG003_chrY_G0000186;Parent=HG003_chrY_T0000468;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=intron:HG003_chrY_T0000468:1;Name=LOC112268312;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13980294	13981492	.	+	.	source_transcript=hg002_chrY_paternal_318.3;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_318.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;alternative_source_transcripts=hg002_chrY_paternal_318.3,hg002_chrY_paternal_318.3;transcript_id=HG003_chrY_T0000468;gene_id=HG003_chrY_G0000186;Parent=HG003_chrY_T0000468;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=exon:HG003_chrY_T0000468:2;Name=LOC112268312;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	14094932	14341689	.	-	.	source_gene_common_name=UTY;source_gene=hg002_chrY_paternal_321;alternative_source_transcripts=hg002_chrY_paternal_321.4;gene_id=HG003_chrY_G0000187;gene_biotype=protein_coding;gene_name=UTY;gene_sources=liftoff,augTM,transMap;ID=HG003_chrY_G0000187;Name=UTY
HG003_chrY	CAT	transcript	14094932	14341052	1000	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000469;Name=UTY
HG003_chrY	CAT	exon	14094932	14095863	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000469:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14095864	14112037	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000469:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112038	14112223	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000469:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000469:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000469:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000469:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000469:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000469:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000469:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000469:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000469:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000469:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000469:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000469:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000469:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000469:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000469:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000469:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000469:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000469:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000469:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000469:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000469:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000469:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000469:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000469:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000469:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14219497	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000469:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14219498	14219653	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000469:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219654	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000469:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000469:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000469:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000469:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000469:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000469:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000469:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000469:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000469:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000469:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000469:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000469:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000469:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000469:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000469:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000469:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000469:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000469:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000469:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000469:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000469:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000469:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000469:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341052	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000469;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000469:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000470;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000470:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112052	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000470:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000470:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000470:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000470:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000470:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000470:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000470:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000470:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000470:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000470:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000470:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000470:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000470:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000470:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000470:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000470:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000470:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000470:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000470:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000470:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000470:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000470:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000470:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000470:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000470:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000470:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000470:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000470:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000470:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000470:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000470:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000470:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000470:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000470:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000470:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000470:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000470:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000470:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000470:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000470:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000470:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000470:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000470:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000470:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000470:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000470:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000470:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000470:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000470:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000470;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000470:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000471;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000471:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112052	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000471:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000471:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000471:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000471:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000471:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000471:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000471:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000471:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000471:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000471:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000471:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000471:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000471:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000471:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000471:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000471:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000471:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000471:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000471:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000471:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14196596	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000471:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14196597	14197369	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000471:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14197370	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000471:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000471:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000471:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000471:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000471:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000471:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000471:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000471:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000471:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000471:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000471:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000471:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000471:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000471:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000471:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000471:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000471:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000471:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14264817	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000471:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14264818	14264923	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000471:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14264924	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000471:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000471:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000471:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000471:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000471:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000471:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000471:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000471:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000471:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000471:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000471:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000471;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000471:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000472;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000472:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112052	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000472:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000472:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000472:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000472:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000472:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000472:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000472:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000472:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000472:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000472:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000472:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000472:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14166687	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000472:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166688	14166755	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000472:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166756	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000472:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000472:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000472:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000472:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000472:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000472:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000472:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000472:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14196596	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000472:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14196597	14197369	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000472:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14197370	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000472:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000472:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000472:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000472:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000472:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000472:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220121	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000472:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220122	14220256	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000472:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14220257	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000472:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000472:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000472:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000472:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000472:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000472:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230294	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000472:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230295	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000472:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000472:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000472:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000472:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000472:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14264817	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000472:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14264818	14264923	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000472:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14264924	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000472:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000472:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000472:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000472:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000472:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000472:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000472:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000472:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000472:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000472:28;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000472:28;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000472;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000472:29;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000473;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000473:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112037	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000473:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112038	14112223	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000473:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000473:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000473:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000473:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000473:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000473:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000473:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000473:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000473:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000473:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000473:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000473:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000473:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000473:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000473:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000473:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000473:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000473:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000473:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14195251	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000473:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14195252	14195374	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000473:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14195375	14196596	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000473:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14196597	14197369	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000473:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14197370	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000473:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000473:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000473:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000473:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000473:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000473:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000473:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000473:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000473:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000473:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000473:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000473:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000473:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000473:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000473:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000473:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000473:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000473:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000473:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000473:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000473:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000473:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000473:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000473:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000473:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000473:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000473:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000473:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000473:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000473;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000473:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000474;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000474:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112052	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000474:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000474:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000474:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000474:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000474:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000474:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000474:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000474:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000474:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000474:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000474:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000474:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000474:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000474:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000474:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000474:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000474:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000474:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000474:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000474:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14196596	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000474:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14196597	14197369	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000474:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14197370	14216408	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000474:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216409	14216562	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000474:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216563	14216671	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000474:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216672	14216737	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000474:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216738	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000474:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000474:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000474:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000474:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220121	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000474:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220122	14220256	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000474:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14220257	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000474:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000474:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000474:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000474:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000474:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000474:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000474:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000474:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000474:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000474:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000474:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000474:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000474:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000474:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000474:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000474:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000474:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000474:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000474:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000474:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000474:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000474;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000474:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000475;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000475:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000475:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000475:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000475:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000475:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000475:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000475:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000475:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000475:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000475:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000475:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000475:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000475:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000475:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000475:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000475:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000475:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000475:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000475:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14196596	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000475:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14196597	14196834	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000475:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14196835	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000475:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000475:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000475:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000475:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000475:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000475:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220121	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000475:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220122	14220256	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000475:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14220257	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000475:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000475:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000475:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000475:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000475:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000475:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000475:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000475:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000475:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000475:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000475:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000475:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000475:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000475:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000475:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000475:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000475:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000475:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000475:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000475:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000475:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000475:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000475:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000475;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000475:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000476;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000476:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112052	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000476:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000476:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000476:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000476:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000476:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000476:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000476:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000476:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000476:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000476:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000476:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000476:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000476:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000476:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000476:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000476:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000476:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000476:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000476:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000476:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14196596	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000476:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14196597	14197369	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000476:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14197370	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000476:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000476:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000476:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000476:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000476:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000476:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000476:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000476:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000476:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000476:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000476:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000476:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000476:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000476:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000476:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000476:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000476:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000476:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000476:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000476:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000476:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000476:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000476:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000476:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000476:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000476:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000476:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000476;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000476:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000477;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000477:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112052	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000477:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000477:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000477:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000477:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000477:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000477:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000477:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000477:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000477:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000477:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000477:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000477:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000477:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000477:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000477:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000477:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000477:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000477:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000477:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000477:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14196596	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000477:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14196597	14197369	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000477:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14197370	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000477:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000477:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000477:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000477:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000477:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000477:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000477:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000477:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000477:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000477:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000477:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000477:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000477:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000477:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000477:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000477:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000477:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000477:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000477:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000477:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000477:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000477:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000477:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000477:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000477:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000477:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14336921	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000477:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14336922	14337044	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000477:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14337045	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000477:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000477:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000477:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000477;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000477:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000478;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000478:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112052	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000478:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000478:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000478:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000478:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000478:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000478:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000478:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000478:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000478:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000478:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000478:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000478:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000478:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000478:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000478:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000478:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000478:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000478:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000478:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000478:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14196596	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000478:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14196597	14196834	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000478:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14196835	14216408	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000478:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216409	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000478:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000478:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000478:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000478:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000478:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000478:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000478:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000478:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000478:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000478:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000478:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000478:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000478:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000478:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000478:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000478:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000478:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000478:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000478:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000478:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000478:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000478:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000478:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000478:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000478:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000478:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000478:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000478:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000478;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000478:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000479;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000479:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112052	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000479:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000479:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000479:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000479:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14139276	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000479:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14139277	14139381	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000479:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14139382	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000479:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000479:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000479:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000479:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000479:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000479:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000479:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000479:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000479:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000479:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000479:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000479:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000479:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000479:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000479:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000479:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000479:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000479:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000479:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000479:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000479:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000479:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000479:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000479:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000479:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221514	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000479:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221515	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000479:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000479:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000479:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000479:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000479:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000479:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000479:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000479:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000479:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000479:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000479:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000479:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000479:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000479:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000479:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000479:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000479:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000479:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000479:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000479;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000479:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000480;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000480:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112052	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000480:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000480:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000480:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000480:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000480:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000480:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000480:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000480:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000480:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000480:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000480:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000480:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000480:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000480:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000480:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000480:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000480:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000480:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000480:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000480:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000480:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000480:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000480:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000480:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000480:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000480:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14219344	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000480:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14219345	14219480	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000480:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219481	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000480:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000480:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000480:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000480:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000480:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000480:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000480:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000480:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000480:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000480:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000480:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000480:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000480:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000480:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000480:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000480:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000480:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000480:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000480:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000480:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000480:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000480:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000480:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000480;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000480:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000481;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000481:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112052	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000481:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000481:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000481:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000481:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000481:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000481:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000481:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000481:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000481:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000481:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000481:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000481:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000481:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000481:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000481:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000481:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000481:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000481:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000481:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000481:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14196596	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000481:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14196597	14197369	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000481:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14197370	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000481:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000481:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000481:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000481:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000481:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000481:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14219344	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000481:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14219345	14219555	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000481:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219556	14220121	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000481:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220122	14220256	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000481:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14220257	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000481:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000481:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000481:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000481:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000481:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000481:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000481:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000481:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000481:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000481:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000481:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000481:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000481:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000481:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000481:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000481:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000481:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000481:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000481:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000481:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000481:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000481:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000481:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000481;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000481:28;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000482;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000482:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112052	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000482:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000482:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000482:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000482:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000482:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000482:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000482:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000482:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000482:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000482:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000482:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000482:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14166687	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000482:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166688	14166755	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000482:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166756	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000482:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000482:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000482:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000482:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000482:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000482:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000482:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000482:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000482:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000482:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000482:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000482:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000482:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000482:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220121	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000482:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220122	14220256	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000482:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14220257	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000482:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000482:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000482:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221514	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000482:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221515	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000482:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000482:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000482:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000482:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000482:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000482:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000482:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000482:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000482:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000482:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000482:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000482:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000482:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000482:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000482:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000482:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000482:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000482:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000482:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000482;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000482:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000483;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000483:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112052	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000483:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000483:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000483:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000483:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000483:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000483:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000483:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000483:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000483:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000483:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000483:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000483:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000483:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000483:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000483:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000483:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000483:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000483:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000483:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000483:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14196596	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000483:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14196597	14197369	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000483:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14197370	14216408	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000483:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216409	14216562	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000483:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216563	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000483:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000483:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000483:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000483:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000483:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000483:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000483:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000483:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000483:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000483:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000483:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000483:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000483:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000483:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000483:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000483:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000483:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000483:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000483:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000483:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000483:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000483:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000483:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000483:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000483:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000483:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000483:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000483;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000483:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000484;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000484:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112052	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000484:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000484:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000484:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000484:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000484:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000484:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000484:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000484:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000484:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000484:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000484:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000484:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14166687	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000484:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166688	14166755	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000484:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166756	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000484:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000484:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000484:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000484:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000484:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000484:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000484:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000484:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000484:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000484:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000484:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000484:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000484:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000484:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000484:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000484:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000484:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000484:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000484:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000484:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000484:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000484:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000484:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000484:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000484:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000484:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000484:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000484:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000484:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000484:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000484:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000484:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000484:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000484:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000484:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000484:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000484:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000484;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000484:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000485;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000485:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112052	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000485:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000485:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000485:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000485:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000485:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000485:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000485:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000485:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000485:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000485:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000485:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000485:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000485:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000485:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000485:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000485:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000485:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000485:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000485:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000485:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000485:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000485:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000485:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000485:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000485:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000485:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220121	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000485:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220122	14220256	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000485:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14220257	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000485:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000485:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000485:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000485:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000485:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000485:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000485:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000485:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000485:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000485:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000485:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000485:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000485:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000485:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000485:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000485:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000485:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000485:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000485:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000485:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000485:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000485:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000485:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000485;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000485:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000486;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000486:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112052	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000486:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000486:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000486:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000486:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000486:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000486:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000486:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000486:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000486:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000486:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000486:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000486:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000486:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000486:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000486:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000486:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000486:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000486:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000486:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000486:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000486:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000486:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000486:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000486:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000486:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000486:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14219497	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000486:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14219498	14219653	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000486:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219654	14220121	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000486:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220122	14220256	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000486:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14220257	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000486:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000486:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000486:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000486:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000486:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000486:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000486:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000486:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000486:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000486:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000486:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000486:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000486:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000486:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000486:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000486:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000486:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000486:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000486:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000486:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000486:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000486:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000486:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000486;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000486:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000487;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000487:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112052	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000487:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000487:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000487:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000487:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000487:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000487:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000487:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000487:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000487:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000487:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000487:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000487:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000487:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000487:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000487:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000487:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000487:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000487:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000487:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000487:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000487:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000487:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000487:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000487:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14219497	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000487:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14219498	14219653	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000487:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219654	14220121	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000487:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220122	14220256	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000487:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14220257	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000487:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000487:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000487:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000487:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000487:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000487:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000487:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000487:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000487:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000487:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000487:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000487:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000487:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000487:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000487:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000487:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000487:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000487:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000487:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000487:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000487:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000487;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000487:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000488;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000488:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112052	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000488:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000488:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000488:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000488:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000488:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000488:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000488:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000488:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14161035	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000488:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14161036	14161103	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000488:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14161104	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000488:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000488:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000488:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000488:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000488:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000488:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000488:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000488:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000488:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000488:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000488:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000488:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000488:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000488:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000488:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000488:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000488:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000488:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14219497	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000488:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14219498	14219587	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000488:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219588	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000488:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000488:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000488:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000488:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000488:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000488:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000488:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000488:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000488:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000488:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000488:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000488:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14260973	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000488:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14260974	14261087	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000488:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14261088	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000488:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000488:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000488:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000488:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000488:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000488:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000488:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000488:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000488:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000488:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000488:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000488;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000488:28;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000489;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000489:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112037	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000489:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112038	14112223	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000489:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000489:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000489:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000489:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000489:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000489:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000489:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14161035	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000489:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14161036	14161103	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000489:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14161104	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000489:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000489:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000489:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000489:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000489:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000489:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000489:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000489:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000489:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000489:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000489:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000489:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000489:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000489:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000489:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000489:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000489:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000489:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14219497	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000489:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14219498	14219555	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000489:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219556	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000489:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000489:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000489:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000489:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000489:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000489:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000489:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000489:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000489:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000489:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000489:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000489:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000489:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000489:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000489:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000489:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000489:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000489:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000489:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000489:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000489:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000489:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000489:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000489;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000489:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000490;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000490:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112052	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000490:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000490:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000490:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000490:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000490:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000490:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000490:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000490:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000490:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000490:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000490:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166520	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000490:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166521	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000490:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000490:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000490:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000490:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000490:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000490:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000490:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000490:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000490:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000490:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000490:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000490:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000490:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000490:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000490:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000490:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000490:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000490:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000490:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000490:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000490:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000490:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000490:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000490:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000490:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000490:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14260973	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000490:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14260974	14261087	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000490:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14261088	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000490:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000490:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000490:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000490:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000490:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000490:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000490:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000490:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000490:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000490:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000490:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000490;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000490:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000491;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000491:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112052	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000491:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000491:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000491:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000491:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000491:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000491:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000491:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000491:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000491:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000491:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14165216	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000491:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14165217	14165245	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000491:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14165246	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000491:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000491:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000491:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000491:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000491:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000491:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000491:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000491:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187376	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000491:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187377	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000491:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000491:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000491:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000491:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000491:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000491:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000491:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14219497	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000491:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14219498	14219653	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000491:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219654	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000491:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000491:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000491:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000491:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000491:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000491:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000491:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000491:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000491:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000491:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000491:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000491:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14264817	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000491:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14264818	14264923	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000491:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14264924	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000491:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000491:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000491:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000491:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000491:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000491:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000491:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000491:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000491:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000491:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000491:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000491;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000491:28;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000492;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000492:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112052	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000492:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000492:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000492:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000492:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000492:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000492:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000492:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000492:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14161011	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000492:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14161012	14161103	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000492:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14161104	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000492:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000492:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000492:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000492:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000492:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000492:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000492:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000492:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000492:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000492:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000492:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000492:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14196596	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000492:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14196597	14197369	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000492:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14197370	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000492:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216126	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000492:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216127	14216408	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000492:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216409	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000492:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000492:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000492:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000492:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000492:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14219497	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000492:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14219498	14219653	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000492:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219654	14220121	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000492:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220122	14220256	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000492:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14220257	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000492:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000492:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000492:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000492:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000492:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000492:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000492:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000492:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000492:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000492:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000492:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000492:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000492:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000492:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000492:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000492:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000492:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000492:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000492:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000492:28;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000492:28;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000492:29;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000492:29;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000492;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000492:30;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000493;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000493:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000493:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000493:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000493:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000493:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000493:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000493:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000493:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000493:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000493:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000493:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000493:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000493:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000493:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000493:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000493:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000493:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000493:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000493:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000493:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000493:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000493:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000493:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000493:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000493:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14219497	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000493:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14219498	14219555	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000493:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219556	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000493:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000493:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000493:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000493:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000493:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000493:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000493:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000493:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000493:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000493:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000493:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000493:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000493:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000493:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000493:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000493:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000493:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000493:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000493:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000493:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000493:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000493:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000493:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000493;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000493:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000494;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000494:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000494:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000494:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000494:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000494:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000494:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000494:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000494:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000494:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000494:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000494:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000494:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000494:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000494:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000494:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000494:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000494:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000494:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000494:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000494:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000494:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000494:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000494:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000494:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000494:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220121	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000494:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220122	14220256	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000494:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14220257	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000494:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000494:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000494:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000494:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000494:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000494:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000494:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000494:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000494:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000494:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000494:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000494:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000494:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000494:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000494:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000494:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000494:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000494:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000494:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000494:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000494:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000494:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000494:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000494;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000494:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000495;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000495:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112052	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000495:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000495:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000495:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000495:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000495:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000495:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000495:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000495:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000495:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000495:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000495:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000495:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000495:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000495:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000495:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000495:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000495:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000495:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187376	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000495:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187377	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000495:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000495:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000495:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000495:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000495:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000495:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000495:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14219497	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000495:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14219498	14219653	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000495:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219654	14220121	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000495:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220122	14220256	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000495:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14220257	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000495:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000495:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000495:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000495:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000495:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000495:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000495:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000495:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000495:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000495:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14264817	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000495:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14264818	14264923	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000495:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14264924	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000495:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000495:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000495:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000495:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000495:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000495:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000495:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000495:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000495:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000495:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000495:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000495;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000495:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000496;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000496:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112052	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000496:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000496:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000496:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000496:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000496:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000496:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000496:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000496:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000496:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000496:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000496:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000496:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000496:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000496:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000496:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000496:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000496:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000496:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000496:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000496:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000496:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000496:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000496:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000496:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000496:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000496:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14219497	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000496:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14219498	14219653	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000496:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219654	14220121	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000496:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220122	14220256	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000496:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14220257	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000496:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000496:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000496:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000496:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000496:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000496:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000496:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000496:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000496:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000496:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000496:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000496:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000496:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000496:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000496:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000496:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000496:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000496:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000496:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000496:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000496:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000496;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000496:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000497;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000497:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112037	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000497:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112038	14112223	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000497:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000497:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000497:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000497:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000497:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000497:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000497:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14161035	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000497:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14161036	14161103	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000497:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14161104	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000497:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000497:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000497:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000497:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000497:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000497:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000497:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000497:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000497:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000497:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000497:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000497:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000497:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000497:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000497:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000497:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000497:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000497:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220121	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000497:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220122	14220256	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000497:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14220257	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000497:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000497:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000497:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000497:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000497:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000497:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000497:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000497:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000497:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000497:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000497:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000497:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000497:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000497:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000497:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000497:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000497:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000497:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000497:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000497:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000497:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000497:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000497:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000497;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000497:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000498;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000498:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112037	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000498:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112038	14112223	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000498:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000498:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000498:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000498:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000498:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000498:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000498:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000498:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000498:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000498:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000498:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000498:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000498:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000498:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000498:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000498:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000498:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000498:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000498:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14196596	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000498:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14196597	14197369	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000498:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14197370	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000498:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000498:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000498:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000498:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000498:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000498:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000498:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000498:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000498:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000498:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000498:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000498:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000498:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000498:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000498:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000498:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000498:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000498:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14260973	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000498:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14260974	14261087	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000498:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14261088	14264817	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000498:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14264818	14264923	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000498:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14264924	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000498:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000498:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000498:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000498:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000498:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000498:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000498:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000498:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000498:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000498:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000498:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000498;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000498:28;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000499;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000499:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112037	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000499:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112038	14112223	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000499:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000499:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000499:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000499:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000499:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000499:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000499:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000499:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000499:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000499:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000499:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000499:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000499:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000499:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000499:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000499:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000499:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000499:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000499:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000499:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000499:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000499:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000499:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000499:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000499:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000499:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000499:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000499:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000499:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000499:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000499:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000499:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000499:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000499:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000499:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000499:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000499:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000499:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000499:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000499:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000499:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000499:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000499:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000499:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000499:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000499:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000499;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000499:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000500;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000500:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112037	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000500:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112038	14112223	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000500:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000500:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000500:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000500:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000500:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000500:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000500:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000500:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000500:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000500:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000500:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000500:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000500:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000500:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000500:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000500:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000500:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000500:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000500:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000500:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000500:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000500:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000500:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000500:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000500:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000500:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000500:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000500:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000500:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000500:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000500:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000500:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000500:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000500:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000500:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000500:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000500:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000500:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000500:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000500:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000500:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000500:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000500:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000500:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000500:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000500:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000500:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000500:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000500;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000500:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000501;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000501:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112052	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000501:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000501:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000501:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000501:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000501:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000501:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000501:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000501:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000501:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000501:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000501:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000501:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000501:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000501:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000501:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000501:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000501:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000501:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14196596	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000501:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14196597	14196834	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000501:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14196835	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000501:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000501:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000501:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000501:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000501:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000501:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000501:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000501:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000501:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000501:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000501:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000501:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000501:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000501:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000501:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000501:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000501:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000501:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000501:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000501:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000501:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000501:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000501:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000501:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000501:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000501:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000501:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000501;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000501:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000502;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000502:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112037	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000502:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112038	14112223	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000502:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000502:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000502:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000502:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000502:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000502:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000502:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000502:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000502:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000502:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000502:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000502:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000502:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000502:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000502:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000502:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000502:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000502:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000502:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14215819	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000502:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14215820	14215867	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000502:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14215868	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000502:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000502:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000502:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000502:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000502:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000502:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000502:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000502:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000502:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000502:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000502:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000502:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000502:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000502:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000502:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000502:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000502:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000502:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000502:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000502:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000502:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000502:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000502:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000502:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000502:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000502:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000502:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000502:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000502:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000502;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000502:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000503;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000503:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112052	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000503:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000503:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000503:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000503:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000503:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000503:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000503:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000503:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000503:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000503:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000503:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000503:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000503:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000503:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184135	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000503:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184136	14184402	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000503:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184403	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000503:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000503:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000503:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000503:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000503:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000503:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000503:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000503:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000503:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000503:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000503:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000503:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000503:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000503:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000503:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000503:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000503:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000503:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000503:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000503:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000503:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000503:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000503:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000503:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000503:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000503:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000503:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000503:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000503:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000503:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000503:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000503:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000503:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000503:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000503:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000503;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000503:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000504;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000504:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112052	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000504:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000504:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000504:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000504:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000504:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000504:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000504:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000504:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14161011	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000504:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14161012	14161103	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000504:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14161104	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000504:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000504:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000504:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000504:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000504:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000504:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000504:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000504:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000504:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000504:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000504:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000504:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000504:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000504:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000504:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000504:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000504:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000504:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000504:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000504:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000504:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000504:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000504:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000504:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000504:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000504:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000504:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000504:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000504:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000504:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000504:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000504:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000504:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000504:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000504:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000504:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000504:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000504:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000504:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000504:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000504:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000504;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000504:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000505;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000505:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112052	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000505:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000505:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000505:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000505:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000505:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000505:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000505:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000505:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14161035	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000505:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14161036	14161103	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000505:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14161104	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000505:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000505:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000505:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000505:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000505:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000505:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000505:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000505:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000505:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000505:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000505:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000505:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14196596	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000505:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14196597	14197369	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000505:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14197370	14216408	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000505:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216409	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000505:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000505:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000505:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000505:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000505:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000505:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000505:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000505:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000505:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000505:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000505:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000505:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000505:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000505:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000505:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000505:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000505:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000505:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000505:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000505:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000505:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14300723	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000505:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14300724	14300803	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000505:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14300804	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000505:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000505:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000505:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000505:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000505:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000505:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000505:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000505;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000505:28;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000506;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000506:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112052	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000506:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000506:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000506:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000506:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000506:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000506:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000506:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000506:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000506:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000506:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000506:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000506:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000506:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000506:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000506:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000506:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000506:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000506:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000506:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000506:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14216408	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000506:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216409	14216562	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000506:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216563	14216671	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000506:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216672	14216737	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000506:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216738	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000506:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000506:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000506:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000506:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14219497	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000506:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14219498	14219587	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000506:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219588	14220121	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000506:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220122	14220256	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000506:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14220257	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000506:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000506:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000506:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000506:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000506:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000506:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000506:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000506:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000506:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000506:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000506:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000506:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000506:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000506:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000506:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000506:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000506:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000506:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000506:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000506:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000506:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000506:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000506:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000506;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000506:28;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000507;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000507:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112052	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000507:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000507:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000507:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000507:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000507:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000507:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000507:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000507:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000507:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000507:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000507:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000507:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000507:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000507:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000507:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000507:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000507:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000507:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187376	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000507:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187377	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000507:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000507:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000507:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000507:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000507:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000507:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000507:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14219497	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000507:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14219498	14219653	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000507:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219654	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000507:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000507:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000507:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000507:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000507:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000507:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000507:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000507:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000507:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000507:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000507:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000507:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000507:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000507:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000507:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000507:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000507:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000507:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000507:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000507:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000507:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000507;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000507:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000508;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000508:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000508:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000508:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000508:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000508:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000508:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000508:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000508:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000508:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000508:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000508:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000508:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000508:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000508:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000508:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000508:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000508:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000508:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000508:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14196596	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000508:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14196597	14197369	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000508:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14197370	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000508:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000508:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000508:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000508:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000508:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000508:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000508:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000508:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000508:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000508:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000508:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000508:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230294	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000508:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230295	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000508:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000508:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000508:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000508:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000508:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000508:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000508:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000508:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000508:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000508:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000508:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000508:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000508:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000508:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000508:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000508:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000508;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000508:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000509;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000509:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112052	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000509:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000509:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000509:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000509:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000509:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000509:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000509:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000509:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000509:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000509:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000509:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000509:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000509:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000509:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000509:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000509:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000509:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000509:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000509:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000509:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14215819	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000509:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14215820	14215867	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000509:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14215868	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000509:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000509:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000509:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000509:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000509:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000509:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14219497	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000509:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14219498	14219587	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000509:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219588	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000509:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000509:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000509:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000509:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000509:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000509:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000509:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000509:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000509:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000509:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000509:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000509:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000509:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000509:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000509:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000509:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000509:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000509:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000509:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000509:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000509:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000509:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000509:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000509;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000509:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000510;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000510:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112037	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000510:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112038	14112223	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000510:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000510:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000510:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000510:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000510:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000510:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000510:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000510:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000510:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000510:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000510:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000510:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000510:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000510:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000510:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000510:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000510:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000510:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000510:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14196596	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000510:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14196597	14197369	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000510:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14197370	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000510:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000510:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000510:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000510:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000510:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000510:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14219497	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000510:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14219498	14219555	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000510:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219556	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000510:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000510:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000510:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000510:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000510:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000510:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000510:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000510:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000510:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000510:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000510:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000510:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000510:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000510:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000510:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000510:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000510:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000510:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000510:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000510:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000510:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000510:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000510:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000510;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000510:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000511;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000511:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000511:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000511:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000511:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000511:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000511:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000511:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000511:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000511:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000511:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000511:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000511:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000511:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000511:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000511:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000511:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000511:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000511:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000511:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14196596	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000511:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14196597	14197369	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000511:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14197370	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000511:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000511:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000511:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000511:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000511:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000511:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000511:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000511:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000511:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000511:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000511:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000511:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230294	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000511:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230295	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000511:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000511:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000511:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14264817	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000511:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14264818	14264923	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000511:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14264924	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000511:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000511:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000511:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000511:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000511:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000511:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000511:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000511:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000511:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000511:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000511:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000511;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000511:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000512;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000512:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112052	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000512:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000512:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000512:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000512:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000512:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000512:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000512:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000512:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000512:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000512:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000512:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000512:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000512:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000512:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000512:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000512:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000512:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000512:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000512:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000512:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000512:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000512:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000512:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000512:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000512:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000512:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000512:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000512:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000512:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000512:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000512:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000512:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000512:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000512:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000512:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000512:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000512:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000512:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000512:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000512:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000512:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000512:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000512:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000512:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000512:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000512:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000512:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000512;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000512:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000513;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000513:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112052	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000513:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000513:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000513:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000513:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000513:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000513:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000513:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000513:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000513:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000513:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000513:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000513:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000513:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000513:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000513:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000513:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000513:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000513:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187376	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000513:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187377	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000513:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000513:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000513:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000513:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000513:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000513:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000513:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000513:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000513:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000513:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000513:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000513:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000513:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000513:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000513:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000513:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000513:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000513:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000513:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14264817	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000513:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14264818	14264923	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000513:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14264924	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000513:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000513:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000513:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000513:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000513:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000513:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000513:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000513:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000513:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000513:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000513:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000513;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000513:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000514;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000514:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112052	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000514:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000514:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000514:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000514:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000514:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000514:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000514:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000514:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000514:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000514:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000514:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000514:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14166687	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000514:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166688	14166755	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000514:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166756	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000514:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000514:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000514:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000514:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000514:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000514:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000514:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000514:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14196596	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000514:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14196597	14197369	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000514:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14197370	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000514:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000514:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000514:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000514:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000514:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000514:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000514:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000514:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000514:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000514:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000514:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000514:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000514:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000514:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000514:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000514:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000514:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000514:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000514:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000514:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000514:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000514:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000514:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000514:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000514:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000514:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000514:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000514:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000514:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000514;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000514:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000515;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000515:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112052	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000515:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000515:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000515:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000515:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14139276	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000515:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14139277	14139381	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000515:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14139382	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000515:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000515:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000515:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000515:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000515:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000515:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000515:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000515:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000515:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000515:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000515:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000515:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000515:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000515:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000515:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000515:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14196596	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000515:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14196597	14197369	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000515:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14197370	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000515:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000515:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000515:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000515:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000515:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000515:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000515:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000515:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000515:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000515:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000515:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000515:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000515:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000515:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000515:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000515:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000515:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000515:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000515:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000515:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000515:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000515:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000515:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000515:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000515:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000515:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000515:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000515:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000515:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000515;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000515:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000516;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000516:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112052	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000516:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000516:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000516:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000516:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000516:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000516:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000516:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000516:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000516:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000516:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000516:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000516:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000516:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000516:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000516:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000516:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000516:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000516:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000516:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000516:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14196596	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000516:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14196597	14196834	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000516:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14196835	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000516:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000516:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000516:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000516:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000516:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000516:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220121	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000516:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220122	14220256	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000516:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14220257	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000516:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000516:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000516:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000516:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000516:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000516:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000516:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000516:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000516:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000516:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000516:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000516:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000516:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000516:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000516:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000516:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000516:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000516:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000516:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000516:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000516:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000516:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000516:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000516;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000516:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000517;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000517:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112052	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000517:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000517:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000517:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000517:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000517:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000517:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000517:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000517:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000517:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000517:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000517:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000517:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000517:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000517:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000517:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000517:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000517:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000517:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000517:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000517:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14196596	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000517:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14196597	14197369	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000517:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14197370	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000517:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000517:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000517:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000517:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000517:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000517:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14219497	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000517:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14219498	14219555	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000517:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219556	14220121	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000517:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220122	14220256	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000517:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14220257	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000517:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000517:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000517:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000517:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000517:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000517:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000517:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000517:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000517:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000517:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000517:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000517:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000517:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000517:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000517:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000517:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000517:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000517:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000517:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000517:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000517:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000517:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000517:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000517;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000517:28;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000518;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000518:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112052	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000518:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000518:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000518:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000518:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000518:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000518:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000518:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000518:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000518:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000518:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000518:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000518:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000518:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000518:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000518:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000518:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000518:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000518:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000518:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000518:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14196596	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000518:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14196597	14197369	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000518:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14197370	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000518:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000518:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000518:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000518:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000518:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000518:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220121	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000518:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220122	14220256	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000518:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14220257	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000518:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000518:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000518:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000518:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000518:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000518:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000518:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000518:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000518:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000518:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14264817	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000518:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14264818	14264923	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000518:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14264924	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000518:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000518:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000518:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000518:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000518:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000518:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000518:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000518:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000518:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000518:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000518:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000518;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000518:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000519;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000519:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112052	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000519:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000519:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000519:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000519:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000519:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000519:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000519:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000519:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000519:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000519:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000519:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000519:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000519:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000519:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000519:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000519:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000519:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000519:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000519:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000519:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14196596	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000519:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14196597	14197369	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000519:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14197370	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000519:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000519:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000519:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000519:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000519:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000519:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000519:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000519:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000519:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000519:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000519:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000519:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000519:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000519:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000519:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000519:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000519:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000519:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000519:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000519:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000519:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000519:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000519:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000519:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000519:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000519:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000519:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000519;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000519:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000520;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000520:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112052	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000520:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000520:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000520:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000520:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000520:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000520:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000520:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000520:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000520:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000520:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000520:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000520:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000520:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000520:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000520:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000520:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000520:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000520:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000520:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000520:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14196596	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000520:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14196597	14197369	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000520:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14197370	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000520:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000520:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000520:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000520:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000520:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000520:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000520:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14220977	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000520:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14220978	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000520:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000520:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000520:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000520:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000520:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000520:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000520:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000520:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000520:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000520:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000520:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000520:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000520:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000520:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000520:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000520:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000520:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000520:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000520:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000520:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000520:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000520;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000520:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14158545	14341052	1000	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000521;Name=UTY
HG003_chrY	CAT	exon	14158545	14158884	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000521:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000521:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000521:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14161011	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000521:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14161012	14161103	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000521:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14161104	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000521:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000521:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000521:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000521:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000521:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000521:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000521:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000521:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000521:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000521:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000521:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000521:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14196596	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000521:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14196597	14197369	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000521:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14197370	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000521:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000521:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000521:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000521:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000521:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000521:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000521:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000521:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000521:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000521:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000521:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000521:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000521:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000521:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000521:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000521:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000521:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000521:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000521:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000521:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000521:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000521:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000521:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000521:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000521:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000521:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000521:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000521:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000521:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341052	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000521;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000521:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14160126	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000522;Name=UTY
HG003_chrY	CAT	exon	14160126	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000522:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14161011	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000522:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14161012	14161103	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000522:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14161104	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000522:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000522:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000522:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000522:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000522:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000522:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000522:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000522:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000522:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000522:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000522:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000522:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14196596	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000522:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14196597	14197369	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000522:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14197370	14215819	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000522:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14215820	14215867	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000522:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14215868	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000522:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000522:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000522:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000522:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000522:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000522:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14219497	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000522:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14219498	14219653	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000522:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219654	14220121	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000522:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220122	14220256	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000522:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14220257	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000522:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000522:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000522:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000522:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000522:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000522:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000522:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000522:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000522:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000522:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000522:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000522:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000522:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000522:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000522:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000522:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000522:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000522:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000522:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000522:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000522:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000522:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000522:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000522;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000522:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14160162	14341689	1000	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=HG003_chrY_T0000523;Name=UTY
HG003_chrY	CAT	exon	14160162	14160180	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000523:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14161011	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000523:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14161012	14161103	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000523:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14161104	14163911	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000523:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000523:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000523:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000523:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000523:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000523:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000523:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000523:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000523:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000523:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000523:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000523:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14196596	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000523:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14196597	14197369	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000523:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14197370	14216036	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000523:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000523:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000523:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000523:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000523:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000523:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14219497	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000523:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14219498	14219653	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000523:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219654	14220121	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000523:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220122	14220256	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000523:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14220257	14220800	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000523:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000523:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000523:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000523:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000523:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000523:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000523:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000523:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000523:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000523:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000523:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000523:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000523:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000523:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000523:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000523:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000523:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000523:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000523:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000523:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000523:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000523:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:HG003_chrY_T0000523:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000523;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:HG003_chrY_T0000523:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	14340196	14340233	.	+	.	source_gene_common_name=MIR12120;source_gene=hg002_chrY_paternal_323;alternative_source_transcripts=hg002_chrY_paternal_323.1,hg002_chrY_paternal_323.1;gene_id=HG003_chrY_G0000188;gene_biotype=miRNA;gene_name=MIR12120;gene_sources=liftoff;ID=HG003_chrY_G0000188;Name=MIR12120
HG003_chrY	CAT	transcript	14340196	14340285	1000	+	.	source_transcript=hg002_chrY_paternal_323.1;source_transcript_name=hg002_chrY_paternal_323.1;source_gene=hg002_chrY_paternal_323;source_gene_biotype=miRNA;original_gene_id=hg002_chrY_paternal_323;gene_biotype=miRNA;transcript_biotype=primary_transcript;alignment_id=hg002_chrY_paternal_323.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_323.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MIR12120;alternative_source_transcripts=hg002_chrY_paternal_323.1,hg002_chrY_paternal_323.1;transcript_id=HG003_chrY_T0000524;gene_id=HG003_chrY_G0000188;Parent=HG003_chrY_G0000188;transcript_name=hg002_chrY_paternal_323.1;gene_name=MIR12120;ID=HG003_chrY_T0000524;Name=MIR12120
HG003_chrY	CAT	exon	14340196	14340285	.	+	.	source_transcript=hg002_chrY_paternal_323.1;source_transcript_name=hg002_chrY_paternal_323.1;source_gene=hg002_chrY_paternal_323;source_gene_biotype=miRNA;original_gene_id=hg002_chrY_paternal_323;gene_biotype=miRNA;transcript_biotype=primary_transcript;alignment_id=hg002_chrY_paternal_323.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_323.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MIR12120;alternative_source_transcripts=hg002_chrY_paternal_323.1,hg002_chrY_paternal_323.1;transcript_id=HG003_chrY_T0000524;gene_id=HG003_chrY_G0000188;Parent=HG003_chrY_T0000524;transcript_name=hg002_chrY_paternal_323.1;gene_name=MIR12120;ID=exon:HG003_chrY_T0000524:0;Name=MIR12120;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14340208	14340233	1000	+	.	source_transcript=hg002_chrY_paternal_323.2;source_transcript_name=hg002_chrY_paternal_323.1;source_gene=hg002_chrY_paternal_323;source_gene_biotype=miRNA;original_gene_id=hg002_chrY_paternal_323;gene_biotype=miRNA;transcript_biotype=miRNA;alignment_id=hg002_chrY_paternal_323.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_323.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MIR12120;alternative_source_transcripts=hg002_chrY_paternal_323.2,hg002_chrY_paternal_323.2;transcript_id=HG003_chrY_T0000525;gene_id=HG003_chrY_G0000188;Parent=HG003_chrY_G0000188;transcript_name=hg002_chrY_paternal_323.1;gene_name=MIR12120;ID=HG003_chrY_T0000525;Name=MIR12120
HG003_chrY	CAT	exon	14340208	14340233	.	+	.	source_transcript=hg002_chrY_paternal_323.2;source_transcript_name=hg002_chrY_paternal_323.1;source_gene=hg002_chrY_paternal_323;source_gene_biotype=miRNA;original_gene_id=hg002_chrY_paternal_323;gene_biotype=miRNA;transcript_biotype=miRNA;alignment_id=hg002_chrY_paternal_323.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_323.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MIR12120;alternative_source_transcripts=hg002_chrY_paternal_323.2,hg002_chrY_paternal_323.2;transcript_id=HG003_chrY_T0000525;gene_id=HG003_chrY_G0000188;Parent=HG003_chrY_T0000525;transcript_name=hg002_chrY_paternal_323.1;gene_name=MIR12120;ID=exon:HG003_chrY_T0000525:0;Name=MIR12120;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	14564860	14566985	.	+	.	source_gene_common_name=TMSB4Y;source_gene=hg002_chrY_paternal_324;alternative_source_transcripts=hg002_chrY_paternal_324.1,hg002_chrY_paternal_324.1;gene_id=HG003_chrY_G0000189;gene_biotype=protein_coding;gene_name=TMSB4Y;gene_sources=liftoff;ID=HG003_chrY_G0000189;Name=TMSB4Y
HG003_chrY	CAT	transcript	14564860	14566985	100	+	.	source_transcript=hg002_chrY_paternal_324.1;source_transcript_name=hg002_chrY_paternal_324.1;source_gene=hg002_chrY_paternal_324;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_324;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_324.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_324.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TMSB4Y;alternative_source_transcripts=hg002_chrY_paternal_324.1,hg002_chrY_paternal_324.1;transcript_id=HG003_chrY_T0000526;gene_id=HG003_chrY_G0000189;Parent=HG003_chrY_G0000189;transcript_name=hg002_chrY_paternal_324.1;gene_name=TMSB4Y;ID=HG003_chrY_T0000526;Name=TMSB4Y
HG003_chrY	CAT	exon	14564860	14565396	.	+	.	source_transcript=hg002_chrY_paternal_324.1;source_transcript_name=hg002_chrY_paternal_324.1;source_gene=hg002_chrY_paternal_324;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_324;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_324.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_324.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TMSB4Y;alternative_source_transcripts=hg002_chrY_paternal_324.1,hg002_chrY_paternal_324.1;transcript_id=HG003_chrY_T0000526;gene_id=HG003_chrY_G0000189;Parent=HG003_chrY_T0000526;transcript_name=hg002_chrY_paternal_324.1;gene_name=TMSB4Y;ID=exon:HG003_chrY_T0000526:0;Name=TMSB4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14565297	14565396	.	+	0	source_transcript=hg002_chrY_paternal_324.1;source_transcript_name=hg002_chrY_paternal_324.1;source_gene=hg002_chrY_paternal_324;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_324;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_324.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_324.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TMSB4Y;alternative_source_transcripts=hg002_chrY_paternal_324.1,hg002_chrY_paternal_324.1;transcript_id=HG003_chrY_T0000526;gene_id=HG003_chrY_G0000189;Parent=HG003_chrY_T0000526;transcript_name=hg002_chrY_paternal_324.1;gene_name=TMSB4Y;ID=CDS:HG003_chrY_T0000526:0;Name=TMSB4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	14565297	14565299	.	+	0	source_transcript=hg002_chrY_paternal_324.1;source_transcript_name=hg002_chrY_paternal_324.1;source_gene=hg002_chrY_paternal_324;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_324;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_324.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_324.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TMSB4Y;alternative_source_transcripts=hg002_chrY_paternal_324.1,hg002_chrY_paternal_324.1;transcript_id=HG003_chrY_T0000526;gene_id=HG003_chrY_G0000189;Parent=HG003_chrY_T0000526;transcript_name=hg002_chrY_paternal_324.1;gene_name=TMSB4Y;ID=start_codon:HG003_chrY_T0000526;Name=TMSB4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14565397	14566185	.	+	.	source_transcript=hg002_chrY_paternal_324.1;source_transcript_name=hg002_chrY_paternal_324.1;source_gene=hg002_chrY_paternal_324;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_324;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_324.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_324.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TMSB4Y;alternative_source_transcripts=hg002_chrY_paternal_324.1,hg002_chrY_paternal_324.1;transcript_id=HG003_chrY_T0000526;gene_id=HG003_chrY_G0000189;Parent=HG003_chrY_T0000526;transcript_name=hg002_chrY_paternal_324.1;gene_name=TMSB4Y;ID=intron:HG003_chrY_T0000526:0;Name=TMSB4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14566186	14566985	.	+	.	source_transcript=hg002_chrY_paternal_324.1;source_transcript_name=hg002_chrY_paternal_324.1;source_gene=hg002_chrY_paternal_324;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_324;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_324.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_324.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TMSB4Y;alternative_source_transcripts=hg002_chrY_paternal_324.1,hg002_chrY_paternal_324.1;transcript_id=HG003_chrY_T0000526;gene_id=HG003_chrY_G0000189;Parent=HG003_chrY_T0000526;transcript_name=hg002_chrY_paternal_324.1;gene_name=TMSB4Y;ID=exon:HG003_chrY_T0000526:1;Name=TMSB4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14566186	14566220	.	+	2	source_transcript=hg002_chrY_paternal_324.1;source_transcript_name=hg002_chrY_paternal_324.1;source_gene=hg002_chrY_paternal_324;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_324;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_324.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_324.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TMSB4Y;alternative_source_transcripts=hg002_chrY_paternal_324.1,hg002_chrY_paternal_324.1;transcript_id=HG003_chrY_T0000526;gene_id=HG003_chrY_G0000189;Parent=HG003_chrY_T0000526;transcript_name=hg002_chrY_paternal_324.1;gene_name=TMSB4Y;ID=CDS:HG003_chrY_T0000526:1;Name=TMSB4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	14566218	14566220	.	+	0	source_transcript=hg002_chrY_paternal_324.1;source_transcript_name=hg002_chrY_paternal_324.1;source_gene=hg002_chrY_paternal_324;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_324;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_324.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_324.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TMSB4Y;alternative_source_transcripts=hg002_chrY_paternal_324.1,hg002_chrY_paternal_324.1;transcript_id=HG003_chrY_T0000526;gene_id=HG003_chrY_G0000189;Parent=HG003_chrY_T0000526;transcript_name=hg002_chrY_paternal_324.1;gene_name=TMSB4Y;ID=stop_codon:HG003_chrY_T0000526;Name=TMSB4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	14846722	14847423	.	-	.	source_gene_common_name=VCY;source_gene=hg002_chrY_paternal_327;alternative_source_transcripts=hg002_chrY_paternal_327.1,hg002_chrY_paternal_327.1;gene_id=HG003_chrY_G0000190;gene_biotype=protein_coding;gene_name=VCY;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000190;Name=VCY
HG003_chrY	CAT	transcript	14846722	14847423	100	-	.	source_transcript=hg002_chrY_paternal_327.1;source_transcript_name=hg002_chrY_paternal_327.1;source_gene=hg002_chrY_paternal_327;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_327;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_327.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_327.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY;alternative_source_transcripts=hg002_chrY_paternal_327.1,hg002_chrY_paternal_327.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000527;gene_id=HG003_chrY_G0000190;Parent=HG003_chrY_G0000190;transcript_name=hg002_chrY_paternal_327.1;gene_name=VCY;ID=HG003_chrY_T0000527;Name=VCY
HG003_chrY	CAT	exon	14846722	14847096	.	-	.	source_transcript=hg002_chrY_paternal_327.1;source_transcript_name=hg002_chrY_paternal_327.1;source_gene=hg002_chrY_paternal_327;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_327;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_327.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_327.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY;alternative_source_transcripts=hg002_chrY_paternal_327.1,hg002_chrY_paternal_327.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000527;gene_id=HG003_chrY_G0000190;Parent=HG003_chrY_T0000527;transcript_name=hg002_chrY_paternal_327.1;gene_name=VCY;ID=exon:HG003_chrY_T0000527:0;Name=VCY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14846821	14847096	.	-	0	source_transcript=hg002_chrY_paternal_327.1;source_transcript_name=hg002_chrY_paternal_327.1;source_gene=hg002_chrY_paternal_327;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_327;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_327.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_327.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY;alternative_source_transcripts=hg002_chrY_paternal_327.1,hg002_chrY_paternal_327.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000527;gene_id=HG003_chrY_G0000190;Parent=HG003_chrY_T0000527;transcript_name=hg002_chrY_paternal_327.1;gene_name=VCY;ID=CDS:HG003_chrY_T0000527:0;Name=VCY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	14846821	14846823	.	-	0	source_transcript=hg002_chrY_paternal_327.1;source_transcript_name=hg002_chrY_paternal_327.1;source_gene=hg002_chrY_paternal_327;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_327;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_327.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_327.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY;alternative_source_transcripts=hg002_chrY_paternal_327.1,hg002_chrY_paternal_327.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000527;gene_id=HG003_chrY_G0000190;Parent=HG003_chrY_T0000527;transcript_name=hg002_chrY_paternal_327.1;gene_name=VCY;ID=stop_codon:HG003_chrY_T0000527;Name=VCY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14847097	14847288	.	-	.	source_transcript=hg002_chrY_paternal_327.1;source_transcript_name=hg002_chrY_paternal_327.1;source_gene=hg002_chrY_paternal_327;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_327;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_327.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_327.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY;alternative_source_transcripts=hg002_chrY_paternal_327.1,hg002_chrY_paternal_327.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000527;gene_id=HG003_chrY_G0000190;Parent=HG003_chrY_T0000527;transcript_name=hg002_chrY_paternal_327.1;gene_name=VCY;ID=intron:HG003_chrY_T0000527:0;Name=VCY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14847289	14847423	.	-	.	source_transcript=hg002_chrY_paternal_327.1;source_transcript_name=hg002_chrY_paternal_327.1;source_gene=hg002_chrY_paternal_327;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_327;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_327.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_327.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY;alternative_source_transcripts=hg002_chrY_paternal_327.1,hg002_chrY_paternal_327.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000527;gene_id=HG003_chrY_G0000190;Parent=HG003_chrY_T0000527;transcript_name=hg002_chrY_paternal_327.1;gene_name=VCY;ID=exon:HG003_chrY_T0000527:1;Name=VCY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14847289	14847390	.	-	0	source_transcript=hg002_chrY_paternal_327.1;source_transcript_name=hg002_chrY_paternal_327.1;source_gene=hg002_chrY_paternal_327;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_327;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_327.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_327.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY;alternative_source_transcripts=hg002_chrY_paternal_327.1,hg002_chrY_paternal_327.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000527;gene_id=HG003_chrY_G0000190;Parent=HG003_chrY_T0000527;transcript_name=hg002_chrY_paternal_327.1;gene_name=VCY;ID=CDS:HG003_chrY_T0000527:1;Name=VCY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	14847388	14847390	.	-	0	source_transcript=hg002_chrY_paternal_327.1;source_transcript_name=hg002_chrY_paternal_327.1;source_gene=hg002_chrY_paternal_327;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_327;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_327.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_327.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY;alternative_source_transcripts=hg002_chrY_paternal_327.1,hg002_chrY_paternal_327.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000527;gene_id=HG003_chrY_G0000190;Parent=HG003_chrY_T0000527;transcript_name=hg002_chrY_paternal_327.1;gene_name=VCY;ID=start_codon:HG003_chrY_T0000527;Name=VCY;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	14917217	14917948	.	+	.	source_gene_common_name=VCY1B;source_gene=hg002_chrY_paternal_328;alternative_source_transcripts=hg002_chrY_paternal_328.1,hg002_chrY_paternal_328.1;gene_id=HG003_chrY_G0000191;gene_biotype=protein_coding;gene_name=VCY1B;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000191;Name=VCY1B
HG003_chrY	CAT	transcript	14917217	14917948	100	+	.	source_transcript=hg002_chrY_paternal_328.1;source_transcript_name=hg002_chrY_paternal_328.1;source_gene=hg002_chrY_paternal_328;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_328;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_328.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_328.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY1B;alternative_source_transcripts=hg002_chrY_paternal_328.1,hg002_chrY_paternal_328.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000528;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_G0000191;transcript_name=hg002_chrY_paternal_328.1;gene_name=VCY1B;ID=HG003_chrY_T0000528;Name=VCY1B
HG003_chrY	CAT	exon	14917217	14917381	.	+	.	source_transcript=hg002_chrY_paternal_328.1;source_transcript_name=hg002_chrY_paternal_328.1;source_gene=hg002_chrY_paternal_328;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_328;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_328.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_328.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY1B;alternative_source_transcripts=hg002_chrY_paternal_328.1,hg002_chrY_paternal_328.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000528;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000528;transcript_name=hg002_chrY_paternal_328.1;gene_name=VCY1B;ID=exon:HG003_chrY_T0000528:0;Name=VCY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14917280	14917381	.	+	0	source_transcript=hg002_chrY_paternal_328.1;source_transcript_name=hg002_chrY_paternal_328.1;source_gene=hg002_chrY_paternal_328;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_328;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_328.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_328.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY1B;alternative_source_transcripts=hg002_chrY_paternal_328.1,hg002_chrY_paternal_328.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000528;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000528;transcript_name=hg002_chrY_paternal_328.1;gene_name=VCY1B;ID=CDS:HG003_chrY_T0000528:0;Name=VCY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	14917280	14917282	.	+	0	source_transcript=hg002_chrY_paternal_328.1;source_transcript_name=hg002_chrY_paternal_328.1;source_gene=hg002_chrY_paternal_328;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_328;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_328.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_328.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY1B;alternative_source_transcripts=hg002_chrY_paternal_328.1,hg002_chrY_paternal_328.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000528;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000528;transcript_name=hg002_chrY_paternal_328.1;gene_name=VCY1B;ID=start_codon:HG003_chrY_T0000528;Name=VCY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14917382	14917573	.	+	.	source_transcript=hg002_chrY_paternal_328.1;source_transcript_name=hg002_chrY_paternal_328.1;source_gene=hg002_chrY_paternal_328;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_328;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_328.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_328.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY1B;alternative_source_transcripts=hg002_chrY_paternal_328.1,hg002_chrY_paternal_328.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000528;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000528;transcript_name=hg002_chrY_paternal_328.1;gene_name=VCY1B;ID=intron:HG003_chrY_T0000528:0;Name=VCY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14917574	14917948	.	+	.	source_transcript=hg002_chrY_paternal_328.1;source_transcript_name=hg002_chrY_paternal_328.1;source_gene=hg002_chrY_paternal_328;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_328;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_328.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_328.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY1B;alternative_source_transcripts=hg002_chrY_paternal_328.1,hg002_chrY_paternal_328.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000528;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000528;transcript_name=hg002_chrY_paternal_328.1;gene_name=VCY1B;ID=exon:HG003_chrY_T0000528:1;Name=VCY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14917574	14917849	.	+	0	source_transcript=hg002_chrY_paternal_328.1;source_transcript_name=hg002_chrY_paternal_328.1;source_gene=hg002_chrY_paternal_328;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_328;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_328.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_328.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY1B;alternative_source_transcripts=hg002_chrY_paternal_328.1,hg002_chrY_paternal_328.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000528;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000528;transcript_name=hg002_chrY_paternal_328.1;gene_name=VCY1B;ID=CDS:HG003_chrY_T0000528:1;Name=VCY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	14917847	14917849	.	+	0	source_transcript=hg002_chrY_paternal_328.1;source_transcript_name=hg002_chrY_paternal_328.1;source_gene=hg002_chrY_paternal_328;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_328;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_328.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_328.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY1B;alternative_source_transcripts=hg002_chrY_paternal_328.1,hg002_chrY_paternal_328.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000528;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000528;transcript_name=hg002_chrY_paternal_328.1;gene_name=VCY1B;ID=stop_codon:HG003_chrY_T0000528;Name=VCY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	15383569	15706540	.	+	.	source_gene_common_name=NLGN4Y;source_gene=hg002_chrY_paternal_331;alternative_source_transcripts=hg002_chrY_paternal_331.1,hg002_chrY_paternal_331.1;gene_id=HG003_chrY_G0000192;gene_biotype=protein_coding;gene_name=NLGN4Y;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000192;Name=NLGN4Y
HG003_chrY	CAT	transcript	15383569	15594509	100	+	.	source_transcript=hg002_chrY_paternal_331.1;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.1,hg002_chrY_paternal_331.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000529;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_G0000192;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=HG003_chrY_T0000529;Name=NLGN4Y
HG003_chrY	CAT	exon	15383569	15383894	.	+	.	source_transcript=hg002_chrY_paternal_331.1;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.1,hg002_chrY_paternal_331.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000529;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000529;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000529:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15383895	15482976	.	+	.	source_transcript=hg002_chrY_paternal_331.1;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.1,hg002_chrY_paternal_331.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000529;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000529;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000529:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15482977	15483559	.	+	.	source_transcript=hg002_chrY_paternal_331.1;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.1,hg002_chrY_paternal_331.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000529;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000529;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000529:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15483088	15483559	.	+	0	source_transcript=hg002_chrY_paternal_331.1;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.1,hg002_chrY_paternal_331.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000529;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000529;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000529:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	15483088	15483090	.	+	0	source_transcript=hg002_chrY_paternal_331.1;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.1,hg002_chrY_paternal_331.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000529;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000529;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:HG003_chrY_T0000529;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15483560	15580437	.	+	.	source_transcript=hg002_chrY_paternal_331.1;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.1,hg002_chrY_paternal_331.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000529;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000529;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000529:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15580438	15580497	.	+	.	source_transcript=hg002_chrY_paternal_331.1;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.1,hg002_chrY_paternal_331.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000529;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000529;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000529:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15580438	15580497	.	+	2	source_transcript=hg002_chrY_paternal_331.1;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.1,hg002_chrY_paternal_331.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000529;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000529;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000529:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15580498	15584074	.	+	.	source_transcript=hg002_chrY_paternal_331.1;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.1,hg002_chrY_paternal_331.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000529;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000529;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000529:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15584075	15584227	.	+	.	source_transcript=hg002_chrY_paternal_331.1;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.1,hg002_chrY_paternal_331.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000529;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000529;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000529:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15584075	15584227	.	+	2	source_transcript=hg002_chrY_paternal_331.1;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.1,hg002_chrY_paternal_331.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000529;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000529;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000529:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15584228	15594411	.	+	.	source_transcript=hg002_chrY_paternal_331.1;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.1,hg002_chrY_paternal_331.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000529;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000529;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000529:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15594412	15594509	.	+	.	source_transcript=hg002_chrY_paternal_331.1;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.1,hg002_chrY_paternal_331.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000529;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000529;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000529:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15594412	15594497	.	+	2	source_transcript=hg002_chrY_paternal_331.1;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.1,hg002_chrY_paternal_331.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000529;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000529;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000529:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	15594495	15594497	.	+	0	source_transcript=hg002_chrY_paternal_331.1;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.1,hg002_chrY_paternal_331.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000529;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000529;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:HG003_chrY_T0000529;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	15383569	15706540	100	+	.	source_transcript=hg002_chrY_paternal_331.2;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.2,hg002_chrY_paternal_331.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000530;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_G0000192;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=HG003_chrY_T0000530;Name=NLGN4Y
HG003_chrY	CAT	exon	15383569	15383894	.	+	.	source_transcript=hg002_chrY_paternal_331.2;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.2,hg002_chrY_paternal_331.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000530;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000530;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000530:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15383895	15580437	.	+	.	source_transcript=hg002_chrY_paternal_331.2;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.2,hg002_chrY_paternal_331.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000530;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000530;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000530:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15580438	15580497	.	+	.	source_transcript=hg002_chrY_paternal_331.2;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.2,hg002_chrY_paternal_331.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000530;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000530;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000530:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15580498	15584074	.	+	.	source_transcript=hg002_chrY_paternal_331.2;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.2,hg002_chrY_paternal_331.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000530;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000530;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000530:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15584075	15584227	.	+	.	source_transcript=hg002_chrY_paternal_331.2;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.2,hg002_chrY_paternal_331.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000530;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000530;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000530:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15584107	15584227	.	+	0	source_transcript=hg002_chrY_paternal_331.2;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.2,hg002_chrY_paternal_331.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000530;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000530;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000530:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	15584107	15584109	.	+	0	source_transcript=hg002_chrY_paternal_331.2;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.2,hg002_chrY_paternal_331.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000530;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000530;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:HG003_chrY_T0000530;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15584228	15685099	.	+	.	source_transcript=hg002_chrY_paternal_331.2;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.2,hg002_chrY_paternal_331.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000530;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000530;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000530:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15685100	15685285	.	+	.	source_transcript=hg002_chrY_paternal_331.2;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.2,hg002_chrY_paternal_331.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000530;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000530;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000530:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15685100	15685285	.	+	2	source_transcript=hg002_chrY_paternal_331.2;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.2,hg002_chrY_paternal_331.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000530;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000530;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000530:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15685286	15690615	.	+	.	source_transcript=hg002_chrY_paternal_331.2;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.2,hg002_chrY_paternal_331.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000530;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000530;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000530:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15690616	15691405	.	+	.	source_transcript=hg002_chrY_paternal_331.2;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.2,hg002_chrY_paternal_331.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000530;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000530;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000530:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15690616	15691405	.	+	2	source_transcript=hg002_chrY_paternal_331.2;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.2,hg002_chrY_paternal_331.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000530;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000530;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000530:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15691406	15701298	.	+	.	source_transcript=hg002_chrY_paternal_331.2;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.2,hg002_chrY_paternal_331.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000530;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000530;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000530:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15701299	15706540	.	+	.	source_transcript=hg002_chrY_paternal_331.2;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.2,hg002_chrY_paternal_331.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000530;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000530;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000530:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15701299	15702148	.	+	1	source_transcript=hg002_chrY_paternal_331.2;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.2,hg002_chrY_paternal_331.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000530;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000530;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000530:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	15702146	15702148	.	+	0	source_transcript=hg002_chrY_paternal_331.2;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.2,hg002_chrY_paternal_331.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000530;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000530;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:HG003_chrY_T0000530;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	15383569	15706540	100	+	.	source_transcript=hg002_chrY_paternal_331.3;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.3,hg002_chrY_paternal_331.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000531;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_G0000192;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=HG003_chrY_T0000531;Name=NLGN4Y
HG003_chrY	CAT	exon	15383569	15383894	.	+	.	source_transcript=hg002_chrY_paternal_331.3;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.3,hg002_chrY_paternal_331.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000531;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000531;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000531:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15383895	15482976	.	+	.	source_transcript=hg002_chrY_paternal_331.3;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.3,hg002_chrY_paternal_331.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000531;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000531;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000531:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15482977	15483559	.	+	.	source_transcript=hg002_chrY_paternal_331.3;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.3,hg002_chrY_paternal_331.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000531;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000531;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000531:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15483088	15483559	.	+	0	source_transcript=hg002_chrY_paternal_331.3;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.3,hg002_chrY_paternal_331.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000531;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000531;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000531:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	15483088	15483090	.	+	0	source_transcript=hg002_chrY_paternal_331.3;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.3,hg002_chrY_paternal_331.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000531;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000531;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:HG003_chrY_T0000531;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15483560	15580437	.	+	.	source_transcript=hg002_chrY_paternal_331.3;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.3,hg002_chrY_paternal_331.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000531;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000531;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000531:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15580438	15580497	.	+	.	source_transcript=hg002_chrY_paternal_331.3;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.3,hg002_chrY_paternal_331.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000531;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000531;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000531:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15580438	15580497	.	+	2	source_transcript=hg002_chrY_paternal_331.3;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.3,hg002_chrY_paternal_331.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000531;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000531;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000531:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15580498	15584074	.	+	.	source_transcript=hg002_chrY_paternal_331.3;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.3,hg002_chrY_paternal_331.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000531;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000531;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000531:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15584075	15584227	.	+	.	source_transcript=hg002_chrY_paternal_331.3;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.3,hg002_chrY_paternal_331.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000531;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000531;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000531:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15584075	15584227	.	+	2	source_transcript=hg002_chrY_paternal_331.3;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.3,hg002_chrY_paternal_331.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000531;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000531;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000531:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15584228	15685099	.	+	.	source_transcript=hg002_chrY_paternal_331.3;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.3,hg002_chrY_paternal_331.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000531;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000531;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000531:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15685100	15685285	.	+	.	source_transcript=hg002_chrY_paternal_331.3;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.3,hg002_chrY_paternal_331.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000531;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000531;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000531:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15685100	15685285	.	+	2	source_transcript=hg002_chrY_paternal_331.3;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.3,hg002_chrY_paternal_331.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000531;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000531;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000531:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15685286	15690615	.	+	.	source_transcript=hg002_chrY_paternal_331.3;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.3,hg002_chrY_paternal_331.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000531;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000531;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000531:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15690616	15691405	.	+	.	source_transcript=hg002_chrY_paternal_331.3;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.3,hg002_chrY_paternal_331.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000531;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000531;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000531:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15690616	15691405	.	+	2	source_transcript=hg002_chrY_paternal_331.3;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.3,hg002_chrY_paternal_331.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000531;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000531;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000531:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15691406	15701298	.	+	.	source_transcript=hg002_chrY_paternal_331.3;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.3,hg002_chrY_paternal_331.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000531;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000531;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000531:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15701299	15706540	.	+	.	source_transcript=hg002_chrY_paternal_331.3;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.3,hg002_chrY_paternal_331.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000531;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000531;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000531:6;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15701299	15702148	.	+	1	source_transcript=hg002_chrY_paternal_331.3;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.3,hg002_chrY_paternal_331.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000531;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000531;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000531:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	15702146	15702148	.	+	0	source_transcript=hg002_chrY_paternal_331.3;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.3,hg002_chrY_paternal_331.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000531;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000531;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:HG003_chrY_T0000531;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	15383569	15706540	100	+	.	source_transcript=hg002_chrY_paternal_331.4;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.4,hg002_chrY_paternal_331.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000532;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_G0000192;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=HG003_chrY_T0000532;Name=NLGN4Y
HG003_chrY	CAT	exon	15383569	15383894	.	+	.	source_transcript=hg002_chrY_paternal_331.4;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.4,hg002_chrY_paternal_331.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000532;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000532;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000532:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15383895	15482976	.	+	.	source_transcript=hg002_chrY_paternal_331.4;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.4,hg002_chrY_paternal_331.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000532;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000532;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000532:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15482977	15483559	.	+	.	source_transcript=hg002_chrY_paternal_331.4;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.4,hg002_chrY_paternal_331.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000532;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000532;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000532:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15483088	15483559	.	+	0	source_transcript=hg002_chrY_paternal_331.4;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.4,hg002_chrY_paternal_331.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000532;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000532;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000532:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	15483088	15483090	.	+	0	source_transcript=hg002_chrY_paternal_331.4;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.4,hg002_chrY_paternal_331.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000532;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000532;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:HG003_chrY_T0000532;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15483560	15584074	.	+	.	source_transcript=hg002_chrY_paternal_331.4;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.4,hg002_chrY_paternal_331.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000532;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000532;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000532:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15584075	15584227	.	+	.	source_transcript=hg002_chrY_paternal_331.4;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.4,hg002_chrY_paternal_331.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000532;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000532;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000532:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15584075	15584227	.	+	2	source_transcript=hg002_chrY_paternal_331.4;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.4,hg002_chrY_paternal_331.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000532;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000532;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000532:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15584228	15685099	.	+	.	source_transcript=hg002_chrY_paternal_331.4;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.4,hg002_chrY_paternal_331.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000532;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000532;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000532:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15685100	15685285	.	+	.	source_transcript=hg002_chrY_paternal_331.4;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.4,hg002_chrY_paternal_331.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000532;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000532;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000532:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15685100	15685285	.	+	2	source_transcript=hg002_chrY_paternal_331.4;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.4,hg002_chrY_paternal_331.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000532;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000532;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000532:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15685286	15690615	.	+	.	source_transcript=hg002_chrY_paternal_331.4;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.4,hg002_chrY_paternal_331.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000532;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000532;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000532:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15690616	15691405	.	+	.	source_transcript=hg002_chrY_paternal_331.4;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.4,hg002_chrY_paternal_331.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000532;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000532;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000532:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15690616	15691405	.	+	2	source_transcript=hg002_chrY_paternal_331.4;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.4,hg002_chrY_paternal_331.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000532;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000532;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000532:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15691406	15701298	.	+	.	source_transcript=hg002_chrY_paternal_331.4;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.4,hg002_chrY_paternal_331.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000532;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000532;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000532:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15701299	15706540	.	+	.	source_transcript=hg002_chrY_paternal_331.4;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.4,hg002_chrY_paternal_331.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000532;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000532;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000532:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15701299	15702148	.	+	1	source_transcript=hg002_chrY_paternal_331.4;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.4,hg002_chrY_paternal_331.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000532;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000532;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000532:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	15702146	15702148	.	+	0	source_transcript=hg002_chrY_paternal_331.4;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.4,hg002_chrY_paternal_331.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000532;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000532;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:HG003_chrY_T0000532;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	15383569	15706540	100	+	.	source_transcript=hg002_chrY_paternal_331.5;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.5,hg002_chrY_paternal_331.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000533;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_G0000192;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=HG003_chrY_T0000533;Name=NLGN4Y
HG003_chrY	CAT	exon	15383569	15384525	.	+	.	source_transcript=hg002_chrY_paternal_331.5;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.5,hg002_chrY_paternal_331.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000533;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000533;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000533:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15384526	15482976	.	+	.	source_transcript=hg002_chrY_paternal_331.5;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.5,hg002_chrY_paternal_331.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000533;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000533;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000533:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15482977	15483559	.	+	.	source_transcript=hg002_chrY_paternal_331.5;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.5,hg002_chrY_paternal_331.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000533;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000533;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000533:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15483088	15483559	.	+	0	source_transcript=hg002_chrY_paternal_331.5;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.5,hg002_chrY_paternal_331.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000533;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000533;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000533:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	15483088	15483090	.	+	0	source_transcript=hg002_chrY_paternal_331.5;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.5,hg002_chrY_paternal_331.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000533;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000533;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:HG003_chrY_T0000533;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15483560	15580437	.	+	.	source_transcript=hg002_chrY_paternal_331.5;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.5,hg002_chrY_paternal_331.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000533;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000533;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000533:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15580438	15580497	.	+	.	source_transcript=hg002_chrY_paternal_331.5;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.5,hg002_chrY_paternal_331.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000533;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000533;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000533:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15580438	15580497	.	+	2	source_transcript=hg002_chrY_paternal_331.5;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.5,hg002_chrY_paternal_331.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000533;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000533;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000533:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15580498	15584074	.	+	.	source_transcript=hg002_chrY_paternal_331.5;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.5,hg002_chrY_paternal_331.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000533;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000533;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000533:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15584075	15584227	.	+	.	source_transcript=hg002_chrY_paternal_331.5;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.5,hg002_chrY_paternal_331.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000533;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000533;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000533:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15584075	15584227	.	+	2	source_transcript=hg002_chrY_paternal_331.5;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.5,hg002_chrY_paternal_331.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000533;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000533;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000533:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15584228	15685099	.	+	.	source_transcript=hg002_chrY_paternal_331.5;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.5,hg002_chrY_paternal_331.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000533;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000533;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000533:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15685100	15685285	.	+	.	source_transcript=hg002_chrY_paternal_331.5;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.5,hg002_chrY_paternal_331.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000533;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000533;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000533:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15685100	15685285	.	+	2	source_transcript=hg002_chrY_paternal_331.5;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.5,hg002_chrY_paternal_331.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000533;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000533;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000533:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15685286	15690615	.	+	.	source_transcript=hg002_chrY_paternal_331.5;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.5,hg002_chrY_paternal_331.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000533;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000533;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000533:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15690616	15691405	.	+	.	source_transcript=hg002_chrY_paternal_331.5;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.5,hg002_chrY_paternal_331.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000533;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000533;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000533:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15690616	15691405	.	+	2	source_transcript=hg002_chrY_paternal_331.5;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.5,hg002_chrY_paternal_331.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000533;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000533;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000533:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15691406	15701298	.	+	.	source_transcript=hg002_chrY_paternal_331.5;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.5,hg002_chrY_paternal_331.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000533;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000533;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000533:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15701299	15706540	.	+	.	source_transcript=hg002_chrY_paternal_331.5;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.5,hg002_chrY_paternal_331.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000533;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000533;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000533:6;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15701299	15702148	.	+	1	source_transcript=hg002_chrY_paternal_331.5;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.5,hg002_chrY_paternal_331.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000533;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000533;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000533:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	15702146	15702148	.	+	0	source_transcript=hg002_chrY_paternal_331.5;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.5,hg002_chrY_paternal_331.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000533;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000533;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:HG003_chrY_T0000533;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	15384699	15706540	100	+	.	source_transcript=hg002_chrY_paternal_331.6;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.6,hg002_chrY_paternal_331.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000534;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_G0000192;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=HG003_chrY_T0000534;Name=NLGN4Y
HG003_chrY	CAT	exon	15384699	15384851	.	+	.	source_transcript=hg002_chrY_paternal_331.6;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.6,hg002_chrY_paternal_331.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000534;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000534;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000534:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15384852	15482988	.	+	.	source_transcript=hg002_chrY_paternal_331.6;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.6,hg002_chrY_paternal_331.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000534;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000534;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000534:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15482989	15483559	.	+	.	source_transcript=hg002_chrY_paternal_331.6;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.6,hg002_chrY_paternal_331.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000534;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000534;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000534:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15483088	15483559	.	+	0	source_transcript=hg002_chrY_paternal_331.6;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.6,hg002_chrY_paternal_331.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000534;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000534;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000534:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	15483088	15483090	.	+	0	source_transcript=hg002_chrY_paternal_331.6;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.6,hg002_chrY_paternal_331.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000534;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000534;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:HG003_chrY_T0000534;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15483560	15584074	.	+	.	source_transcript=hg002_chrY_paternal_331.6;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.6,hg002_chrY_paternal_331.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000534;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000534;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000534:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15584075	15584227	.	+	.	source_transcript=hg002_chrY_paternal_331.6;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.6,hg002_chrY_paternal_331.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000534;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000534;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000534:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15584075	15584227	.	+	2	source_transcript=hg002_chrY_paternal_331.6;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.6,hg002_chrY_paternal_331.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000534;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000534;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000534:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15584228	15685099	.	+	.	source_transcript=hg002_chrY_paternal_331.6;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.6,hg002_chrY_paternal_331.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000534;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000534;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000534:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15685100	15685285	.	+	.	source_transcript=hg002_chrY_paternal_331.6;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.6,hg002_chrY_paternal_331.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000534;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000534;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000534:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15685100	15685285	.	+	2	source_transcript=hg002_chrY_paternal_331.6;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.6,hg002_chrY_paternal_331.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000534;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000534;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000534:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15685286	15690615	.	+	.	source_transcript=hg002_chrY_paternal_331.6;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.6,hg002_chrY_paternal_331.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000534;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000534;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000534:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15690616	15691405	.	+	.	source_transcript=hg002_chrY_paternal_331.6;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.6,hg002_chrY_paternal_331.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000534;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000534;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000534:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15690616	15691405	.	+	2	source_transcript=hg002_chrY_paternal_331.6;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.6,hg002_chrY_paternal_331.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000534;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000534;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000534:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15691406	15701298	.	+	.	source_transcript=hg002_chrY_paternal_331.6;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.6,hg002_chrY_paternal_331.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000534;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000534;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000534:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15701299	15706540	.	+	.	source_transcript=hg002_chrY_paternal_331.6;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.6,hg002_chrY_paternal_331.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000534;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000534;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000534:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15701299	15702148	.	+	1	source_transcript=hg002_chrY_paternal_331.6;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.6,hg002_chrY_paternal_331.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000534;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000534;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000534:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	15702146	15702148	.	+	0	source_transcript=hg002_chrY_paternal_331.6;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.6,hg002_chrY_paternal_331.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000534;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000534;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:HG003_chrY_T0000534;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	15384925	15706540	100	+	.	source_transcript=hg002_chrY_paternal_331.7;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.7;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.7,hg002_chrY_paternal_331.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000535;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_G0000192;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=HG003_chrY_T0000535;Name=NLGN4Y
HG003_chrY	CAT	exon	15384925	15385237	.	+	.	source_transcript=hg002_chrY_paternal_331.7;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.7,hg002_chrY_paternal_331.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000535;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000535;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000535:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15385238	15482976	.	+	.	source_transcript=hg002_chrY_paternal_331.7;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.7,hg002_chrY_paternal_331.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000535;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000535;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000535:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15482977	15483559	.	+	.	source_transcript=hg002_chrY_paternal_331.7;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.7,hg002_chrY_paternal_331.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000535;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000535;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000535:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15483088	15483559	.	+	0	source_transcript=hg002_chrY_paternal_331.7;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.7,hg002_chrY_paternal_331.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000535;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000535;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000535:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	15483088	15483090	.	+	0	source_transcript=hg002_chrY_paternal_331.7;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.7,hg002_chrY_paternal_331.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000535;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000535;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:HG003_chrY_T0000535;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15483560	15580437	.	+	.	source_transcript=hg002_chrY_paternal_331.7;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.7,hg002_chrY_paternal_331.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000535;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000535;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000535:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15580438	15580497	.	+	.	source_transcript=hg002_chrY_paternal_331.7;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.7,hg002_chrY_paternal_331.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000535;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000535;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000535:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15580438	15580497	.	+	2	source_transcript=hg002_chrY_paternal_331.7;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.7,hg002_chrY_paternal_331.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000535;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000535;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000535:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15580498	15584074	.	+	.	source_transcript=hg002_chrY_paternal_331.7;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.7,hg002_chrY_paternal_331.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000535;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000535;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000535:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15584075	15584227	.	+	.	source_transcript=hg002_chrY_paternal_331.7;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.7,hg002_chrY_paternal_331.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000535;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000535;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000535:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15584075	15584227	.	+	2	source_transcript=hg002_chrY_paternal_331.7;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.7,hg002_chrY_paternal_331.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000535;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000535;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000535:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15584228	15685099	.	+	.	source_transcript=hg002_chrY_paternal_331.7;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.7,hg002_chrY_paternal_331.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000535;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000535;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000535:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15685100	15685285	.	+	.	source_transcript=hg002_chrY_paternal_331.7;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.7,hg002_chrY_paternal_331.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000535;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000535;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000535:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15685100	15685285	.	+	2	source_transcript=hg002_chrY_paternal_331.7;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.7,hg002_chrY_paternal_331.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000535;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000535;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000535:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15685286	15690615	.	+	.	source_transcript=hg002_chrY_paternal_331.7;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.7,hg002_chrY_paternal_331.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000535;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000535;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000535:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15690616	15691405	.	+	.	source_transcript=hg002_chrY_paternal_331.7;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.7,hg002_chrY_paternal_331.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000535;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000535;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000535:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15690616	15691405	.	+	2	source_transcript=hg002_chrY_paternal_331.7;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.7,hg002_chrY_paternal_331.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000535;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000535;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000535:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15691406	15701298	.	+	.	source_transcript=hg002_chrY_paternal_331.7;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.7,hg002_chrY_paternal_331.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000535;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000535;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000535:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15701299	15706540	.	+	.	source_transcript=hg002_chrY_paternal_331.7;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.7,hg002_chrY_paternal_331.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000535;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000535;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000535:6;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15701299	15702148	.	+	1	source_transcript=hg002_chrY_paternal_331.7;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.7,hg002_chrY_paternal_331.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000535;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000535;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000535:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	15702146	15702148	.	+	0	source_transcript=hg002_chrY_paternal_331.7;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.7,hg002_chrY_paternal_331.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000535;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000535;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:HG003_chrY_T0000535;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	15384925	15706540	100	+	.	source_transcript=hg002_chrY_paternal_331.8;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.8;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.8,hg002_chrY_paternal_331.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000536;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_G0000192;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=HG003_chrY_T0000536;Name=NLGN4Y
HG003_chrY	CAT	exon	15384925	15385237	.	+	.	source_transcript=hg002_chrY_paternal_331.8;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.8,hg002_chrY_paternal_331.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000536;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000536;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000536:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15385238	15482976	.	+	.	source_transcript=hg002_chrY_paternal_331.8;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.8,hg002_chrY_paternal_331.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000536;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000536;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000536:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15482977	15483559	.	+	.	source_transcript=hg002_chrY_paternal_331.8;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.8,hg002_chrY_paternal_331.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000536;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000536;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000536:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15483088	15483559	.	+	0	source_transcript=hg002_chrY_paternal_331.8;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.8,hg002_chrY_paternal_331.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000536;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000536;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000536:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	15483088	15483090	.	+	0	source_transcript=hg002_chrY_paternal_331.8;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.8,hg002_chrY_paternal_331.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000536;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000536;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:HG003_chrY_T0000536;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15483560	15584074	.	+	.	source_transcript=hg002_chrY_paternal_331.8;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.8,hg002_chrY_paternal_331.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000536;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000536;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000536:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15584075	15584227	.	+	.	source_transcript=hg002_chrY_paternal_331.8;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.8,hg002_chrY_paternal_331.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000536;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000536;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000536:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15584075	15584227	.	+	2	source_transcript=hg002_chrY_paternal_331.8;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.8,hg002_chrY_paternal_331.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000536;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000536;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000536:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15584228	15685099	.	+	.	source_transcript=hg002_chrY_paternal_331.8;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.8,hg002_chrY_paternal_331.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000536;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000536;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000536:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15685100	15685285	.	+	.	source_transcript=hg002_chrY_paternal_331.8;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.8,hg002_chrY_paternal_331.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000536;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000536;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000536:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15685100	15685285	.	+	2	source_transcript=hg002_chrY_paternal_331.8;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.8,hg002_chrY_paternal_331.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000536;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000536;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000536:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15685286	15690615	.	+	.	source_transcript=hg002_chrY_paternal_331.8;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.8,hg002_chrY_paternal_331.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000536;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000536;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000536:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15690616	15691405	.	+	.	source_transcript=hg002_chrY_paternal_331.8;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.8,hg002_chrY_paternal_331.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000536;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000536;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000536:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15690616	15691405	.	+	2	source_transcript=hg002_chrY_paternal_331.8;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.8,hg002_chrY_paternal_331.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000536;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000536;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000536:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15691406	15701298	.	+	.	source_transcript=hg002_chrY_paternal_331.8;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.8,hg002_chrY_paternal_331.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000536;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000536;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000536:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15701299	15706540	.	+	.	source_transcript=hg002_chrY_paternal_331.8;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.8,hg002_chrY_paternal_331.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000536;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000536;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000536:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15701299	15702148	.	+	1	source_transcript=hg002_chrY_paternal_331.8;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.8,hg002_chrY_paternal_331.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000536;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000536;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000536:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	15702146	15702148	.	+	0	source_transcript=hg002_chrY_paternal_331.8;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.8,hg002_chrY_paternal_331.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000536;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000536;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:HG003_chrY_T0000536;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	15385482	15594509	100	+	.	source_transcript=hg002_chrY_paternal_331.10;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.10;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.10,hg002_chrY_paternal_331.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000537;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_G0000192;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=HG003_chrY_T0000537;Name=NLGN4Y
HG003_chrY	CAT	exon	15385482	15385889	.	+	.	source_transcript=hg002_chrY_paternal_331.10;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.10,hg002_chrY_paternal_331.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000537;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000537;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000537:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15385890	15482976	.	+	.	source_transcript=hg002_chrY_paternal_331.10;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.10,hg002_chrY_paternal_331.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000537;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000537;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000537:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15482977	15483559	.	+	.	source_transcript=hg002_chrY_paternal_331.10;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.10,hg002_chrY_paternal_331.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000537;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000537;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000537:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15483088	15483559	.	+	0	source_transcript=hg002_chrY_paternal_331.10;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.10,hg002_chrY_paternal_331.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000537;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000537;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000537:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	15483088	15483090	.	+	0	source_transcript=hg002_chrY_paternal_331.10;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.10,hg002_chrY_paternal_331.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000537;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000537;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:HG003_chrY_T0000537;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15483560	15580437	.	+	.	source_transcript=hg002_chrY_paternal_331.10;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.10,hg002_chrY_paternal_331.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000537;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000537;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000537:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15580438	15580497	.	+	.	source_transcript=hg002_chrY_paternal_331.10;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.10,hg002_chrY_paternal_331.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000537;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000537;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000537:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15580438	15580497	.	+	2	source_transcript=hg002_chrY_paternal_331.10;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.10,hg002_chrY_paternal_331.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000537;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000537;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000537:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15580498	15584074	.	+	.	source_transcript=hg002_chrY_paternal_331.10;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.10,hg002_chrY_paternal_331.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000537;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000537;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000537:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15584075	15584227	.	+	.	source_transcript=hg002_chrY_paternal_331.10;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.10,hg002_chrY_paternal_331.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000537;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000537;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000537:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15584075	15584227	.	+	2	source_transcript=hg002_chrY_paternal_331.10;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.10,hg002_chrY_paternal_331.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000537;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000537;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000537:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15584228	15594411	.	+	.	source_transcript=hg002_chrY_paternal_331.10;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.10,hg002_chrY_paternal_331.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000537;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000537;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000537:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15594412	15594509	.	+	.	source_transcript=hg002_chrY_paternal_331.10;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.10,hg002_chrY_paternal_331.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000537;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000537;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000537:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15594412	15594497	.	+	2	source_transcript=hg002_chrY_paternal_331.10;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.10,hg002_chrY_paternal_331.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000537;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000537;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000537:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	15594495	15594497	.	+	0	source_transcript=hg002_chrY_paternal_331.10;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.10,hg002_chrY_paternal_331.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000537;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000537;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:HG003_chrY_T0000537;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	15385482	15706540	100	+	.	source_transcript=hg002_chrY_paternal_331.11;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.11;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.11,hg002_chrY_paternal_331.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000538;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_G0000192;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=HG003_chrY_T0000538;Name=NLGN4Y
HG003_chrY	CAT	exon	15385482	15385889	.	+	.	source_transcript=hg002_chrY_paternal_331.11;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.11,hg002_chrY_paternal_331.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000538;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000538;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000538:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15385890	15482976	.	+	.	source_transcript=hg002_chrY_paternal_331.11;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.11,hg002_chrY_paternal_331.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000538;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000538;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000538:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15482977	15483559	.	+	.	source_transcript=hg002_chrY_paternal_331.11;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.11,hg002_chrY_paternal_331.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000538;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000538;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000538:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15483088	15483559	.	+	0	source_transcript=hg002_chrY_paternal_331.11;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.11,hg002_chrY_paternal_331.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000538;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000538;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000538:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	15483088	15483090	.	+	0	source_transcript=hg002_chrY_paternal_331.11;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.11,hg002_chrY_paternal_331.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000538;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000538;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:HG003_chrY_T0000538;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15483560	15580437	.	+	.	source_transcript=hg002_chrY_paternal_331.11;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.11,hg002_chrY_paternal_331.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000538;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000538;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000538:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15580438	15580497	.	+	.	source_transcript=hg002_chrY_paternal_331.11;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.11,hg002_chrY_paternal_331.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000538;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000538;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000538:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15580438	15580497	.	+	2	source_transcript=hg002_chrY_paternal_331.11;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.11,hg002_chrY_paternal_331.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000538;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000538;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000538:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15580498	15584074	.	+	.	source_transcript=hg002_chrY_paternal_331.11;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.11,hg002_chrY_paternal_331.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000538;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000538;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000538:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15584075	15584227	.	+	.	source_transcript=hg002_chrY_paternal_331.11;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.11,hg002_chrY_paternal_331.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000538;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000538;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000538:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15584075	15584227	.	+	2	source_transcript=hg002_chrY_paternal_331.11;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.11,hg002_chrY_paternal_331.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000538;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000538;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000538:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15584228	15685099	.	+	.	source_transcript=hg002_chrY_paternal_331.11;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.11,hg002_chrY_paternal_331.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000538;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000538;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000538:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15685100	15685285	.	+	.	source_transcript=hg002_chrY_paternal_331.11;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.11,hg002_chrY_paternal_331.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000538;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000538;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000538:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15685100	15685285	.	+	2	source_transcript=hg002_chrY_paternal_331.11;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.11,hg002_chrY_paternal_331.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000538;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000538;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000538:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15685286	15690615	.	+	.	source_transcript=hg002_chrY_paternal_331.11;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.11,hg002_chrY_paternal_331.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000538;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000538;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000538:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15690616	15691405	.	+	.	source_transcript=hg002_chrY_paternal_331.11;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.11,hg002_chrY_paternal_331.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000538;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000538;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000538:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15690616	15691405	.	+	2	source_transcript=hg002_chrY_paternal_331.11;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.11,hg002_chrY_paternal_331.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000538;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000538;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000538:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15691406	15701298	.	+	.	source_transcript=hg002_chrY_paternal_331.11;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.11,hg002_chrY_paternal_331.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000538;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000538;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000538:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15701299	15706540	.	+	.	source_transcript=hg002_chrY_paternal_331.11;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.11,hg002_chrY_paternal_331.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000538;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000538;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000538:6;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15701299	15702148	.	+	1	source_transcript=hg002_chrY_paternal_331.11;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.11,hg002_chrY_paternal_331.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000538;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000538;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000538:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	15702146	15702148	.	+	0	source_transcript=hg002_chrY_paternal_331.11;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.11,hg002_chrY_paternal_331.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000538;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000538;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:HG003_chrY_T0000538;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	15385482	15706540	100	+	.	source_transcript=hg002_chrY_paternal_331.12;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.12;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.12,hg002_chrY_paternal_331.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_G0000192;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=HG003_chrY_T0000539;Name=NLGN4Y
HG003_chrY	CAT	exon	15385482	15385661	.	+	.	source_transcript=hg002_chrY_paternal_331.12;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.12,hg002_chrY_paternal_331.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000539;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000539:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15385662	15482976	.	+	.	source_transcript=hg002_chrY_paternal_331.12;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.12,hg002_chrY_paternal_331.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000539;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000539:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15482977	15483559	.	+	.	source_transcript=hg002_chrY_paternal_331.12;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.12,hg002_chrY_paternal_331.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000539;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000539:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15483088	15483559	.	+	0	source_transcript=hg002_chrY_paternal_331.12;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.12,hg002_chrY_paternal_331.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000539;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000539:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	15483088	15483090	.	+	0	source_transcript=hg002_chrY_paternal_331.12;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.12,hg002_chrY_paternal_331.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000539;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:HG003_chrY_T0000539;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15483560	15580437	.	+	.	source_transcript=hg002_chrY_paternal_331.12;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.12,hg002_chrY_paternal_331.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000539;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000539:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15580438	15580497	.	+	.	source_transcript=hg002_chrY_paternal_331.12;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.12,hg002_chrY_paternal_331.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000539;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000539:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15580438	15580497	.	+	2	source_transcript=hg002_chrY_paternal_331.12;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.12,hg002_chrY_paternal_331.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000539;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000539:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15580498	15584074	.	+	.	source_transcript=hg002_chrY_paternal_331.12;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.12,hg002_chrY_paternal_331.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000539;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000539:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15584075	15584227	.	+	.	source_transcript=hg002_chrY_paternal_331.12;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.12,hg002_chrY_paternal_331.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000539;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000539:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15584075	15584227	.	+	2	source_transcript=hg002_chrY_paternal_331.12;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.12,hg002_chrY_paternal_331.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000539;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000539:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15584228	15685099	.	+	.	source_transcript=hg002_chrY_paternal_331.12;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.12,hg002_chrY_paternal_331.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000539;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000539:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15685100	15685285	.	+	.	source_transcript=hg002_chrY_paternal_331.12;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.12,hg002_chrY_paternal_331.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000539;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000539:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15685100	15685285	.	+	2	source_transcript=hg002_chrY_paternal_331.12;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.12,hg002_chrY_paternal_331.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000539;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000539:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15685286	15690615	.	+	.	source_transcript=hg002_chrY_paternal_331.12;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.12,hg002_chrY_paternal_331.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000539;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000539:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15690616	15691405	.	+	.	source_transcript=hg002_chrY_paternal_331.12;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.12,hg002_chrY_paternal_331.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000539;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000539:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15690616	15691405	.	+	2	source_transcript=hg002_chrY_paternal_331.12;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.12,hg002_chrY_paternal_331.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000539;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000539:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15691406	15701298	.	+	.	source_transcript=hg002_chrY_paternal_331.12;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.12,hg002_chrY_paternal_331.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000539;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000539:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15701299	15706540	.	+	.	source_transcript=hg002_chrY_paternal_331.12;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.12,hg002_chrY_paternal_331.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000539;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000539:6;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15701299	15702148	.	+	1	source_transcript=hg002_chrY_paternal_331.12;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.12,hg002_chrY_paternal_331.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000539;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000539:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	15702146	15702148	.	+	0	source_transcript=hg002_chrY_paternal_331.12;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.12,hg002_chrY_paternal_331.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000539;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:HG003_chrY_T0000539;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	15385482	15706540	100	+	.	source_transcript=hg002_chrY_paternal_331.13;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.13;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.13,hg002_chrY_paternal_331.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000540;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_G0000192;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=HG003_chrY_T0000540;Name=NLGN4Y
HG003_chrY	CAT	exon	15385482	15385889	.	+	.	source_transcript=hg002_chrY_paternal_331.13;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.13,hg002_chrY_paternal_331.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000540;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000540;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000540:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15385890	15445141	.	+	.	source_transcript=hg002_chrY_paternal_331.13;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.13,hg002_chrY_paternal_331.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000540;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000540;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000540:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15445142	15445243	.	+	.	source_transcript=hg002_chrY_paternal_331.13;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.13,hg002_chrY_paternal_331.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000540;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000540;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000540:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15445244	15448577	.	+	.	source_transcript=hg002_chrY_paternal_331.13;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.13,hg002_chrY_paternal_331.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000540;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000540;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000540:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15448578	15448682	.	+	.	source_transcript=hg002_chrY_paternal_331.13;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.13,hg002_chrY_paternal_331.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000540;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000540;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000540:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15448683	15482976	.	+	.	source_transcript=hg002_chrY_paternal_331.13;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.13,hg002_chrY_paternal_331.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000540;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000540;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000540:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15482977	15483559	.	+	.	source_transcript=hg002_chrY_paternal_331.13;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.13,hg002_chrY_paternal_331.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000540;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000540;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000540:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15483088	15483559	.	+	0	source_transcript=hg002_chrY_paternal_331.13;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.13,hg002_chrY_paternal_331.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000540;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000540;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000540:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	15483088	15483090	.	+	0	source_transcript=hg002_chrY_paternal_331.13;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.13,hg002_chrY_paternal_331.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000540;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000540;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:HG003_chrY_T0000540;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15483560	15584074	.	+	.	source_transcript=hg002_chrY_paternal_331.13;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.13,hg002_chrY_paternal_331.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000540;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000540;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000540:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15584075	15584227	.	+	.	source_transcript=hg002_chrY_paternal_331.13;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.13,hg002_chrY_paternal_331.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000540;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000540;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000540:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15584075	15584227	.	+	2	source_transcript=hg002_chrY_paternal_331.13;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.13,hg002_chrY_paternal_331.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000540;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000540;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000540:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15584228	15685099	.	+	.	source_transcript=hg002_chrY_paternal_331.13;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.13,hg002_chrY_paternal_331.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000540;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000540;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000540:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15685100	15685285	.	+	.	source_transcript=hg002_chrY_paternal_331.13;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.13,hg002_chrY_paternal_331.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000540;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000540;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000540:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15685100	15685285	.	+	2	source_transcript=hg002_chrY_paternal_331.13;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.13,hg002_chrY_paternal_331.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000540;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000540;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000540:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15685286	15690615	.	+	.	source_transcript=hg002_chrY_paternal_331.13;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.13,hg002_chrY_paternal_331.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000540;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000540;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000540:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15690616	15691405	.	+	.	source_transcript=hg002_chrY_paternal_331.13;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.13,hg002_chrY_paternal_331.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000540;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000540;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000540:6;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15690616	15691405	.	+	2	source_transcript=hg002_chrY_paternal_331.13;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.13,hg002_chrY_paternal_331.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000540;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000540;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000540:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15691406	15701298	.	+	.	source_transcript=hg002_chrY_paternal_331.13;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.13,hg002_chrY_paternal_331.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000540;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000540;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000540:6;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15701299	15706540	.	+	.	source_transcript=hg002_chrY_paternal_331.13;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.13,hg002_chrY_paternal_331.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000540;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000540;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000540:7;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15701299	15702148	.	+	1	source_transcript=hg002_chrY_paternal_331.13;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.13,hg002_chrY_paternal_331.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000540;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000540;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000540:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	15702146	15702148	.	+	0	source_transcript=hg002_chrY_paternal_331.13;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.13,hg002_chrY_paternal_331.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000540;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000540;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:HG003_chrY_T0000540;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	15385482	15706540	100	+	.	source_transcript=hg002_chrY_paternal_331.14;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.14;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.14,hg002_chrY_paternal_331.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000541;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_G0000192;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=HG003_chrY_T0000541;Name=NLGN4Y
HG003_chrY	CAT	exon	15385482	15385661	.	+	.	source_transcript=hg002_chrY_paternal_331.14;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.14,hg002_chrY_paternal_331.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000541;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000541;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000541:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15385662	15482976	.	+	.	source_transcript=hg002_chrY_paternal_331.14;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.14,hg002_chrY_paternal_331.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000541;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000541;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000541:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15482977	15483559	.	+	.	source_transcript=hg002_chrY_paternal_331.14;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.14,hg002_chrY_paternal_331.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000541;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000541;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000541:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15483088	15483559	.	+	0	source_transcript=hg002_chrY_paternal_331.14;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.14,hg002_chrY_paternal_331.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000541;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000541;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000541:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	15483088	15483090	.	+	0	source_transcript=hg002_chrY_paternal_331.14;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.14,hg002_chrY_paternal_331.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000541;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000541;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:HG003_chrY_T0000541;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15483560	15584074	.	+	.	source_transcript=hg002_chrY_paternal_331.14;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.14,hg002_chrY_paternal_331.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000541;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000541;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000541:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15584075	15584227	.	+	.	source_transcript=hg002_chrY_paternal_331.14;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.14,hg002_chrY_paternal_331.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000541;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000541;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000541:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15584075	15584227	.	+	2	source_transcript=hg002_chrY_paternal_331.14;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.14,hg002_chrY_paternal_331.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000541;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000541;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000541:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15584228	15685099	.	+	.	source_transcript=hg002_chrY_paternal_331.14;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.14,hg002_chrY_paternal_331.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000541;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000541;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000541:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15685100	15685285	.	+	.	source_transcript=hg002_chrY_paternal_331.14;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.14,hg002_chrY_paternal_331.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000541;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000541;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000541:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15685100	15685285	.	+	2	source_transcript=hg002_chrY_paternal_331.14;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.14,hg002_chrY_paternal_331.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000541;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000541;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000541:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15685286	15690615	.	+	.	source_transcript=hg002_chrY_paternal_331.14;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.14,hg002_chrY_paternal_331.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000541;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000541;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000541:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15690616	15691405	.	+	.	source_transcript=hg002_chrY_paternal_331.14;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.14,hg002_chrY_paternal_331.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000541;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000541;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000541:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15690616	15691405	.	+	2	source_transcript=hg002_chrY_paternal_331.14;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.14,hg002_chrY_paternal_331.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000541;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000541;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000541:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15691406	15701298	.	+	.	source_transcript=hg002_chrY_paternal_331.14;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.14,hg002_chrY_paternal_331.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000541;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000541;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000541:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15701299	15706540	.	+	.	source_transcript=hg002_chrY_paternal_331.14;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.14,hg002_chrY_paternal_331.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000541;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000541;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000541:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15701299	15702148	.	+	1	source_transcript=hg002_chrY_paternal_331.14;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.14,hg002_chrY_paternal_331.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000541;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000541;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000541:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	15702146	15702148	.	+	0	source_transcript=hg002_chrY_paternal_331.14;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.14,hg002_chrY_paternal_331.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000541;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000541;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:HG003_chrY_T0000541;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	15385482	15706540	100	+	.	source_transcript=hg002_chrY_paternal_331.15;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.15;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.15,hg002_chrY_paternal_331.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000542;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_G0000192;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=HG003_chrY_T0000542;Name=NLGN4Y
HG003_chrY	CAT	exon	15385482	15385510	.	+	.	source_transcript=hg002_chrY_paternal_331.15;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.15,hg002_chrY_paternal_331.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000542;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000542;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000542:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15385511	15482976	.	+	.	source_transcript=hg002_chrY_paternal_331.15;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.15,hg002_chrY_paternal_331.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000542;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000542;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000542:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15482977	15483559	.	+	.	source_transcript=hg002_chrY_paternal_331.15;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.15,hg002_chrY_paternal_331.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000542;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000542;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000542:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15483088	15483559	.	+	0	source_transcript=hg002_chrY_paternal_331.15;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.15,hg002_chrY_paternal_331.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000542;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000542;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000542:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	15483088	15483090	.	+	0	source_transcript=hg002_chrY_paternal_331.15;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.15,hg002_chrY_paternal_331.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000542;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000542;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:HG003_chrY_T0000542;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15483560	15584074	.	+	.	source_transcript=hg002_chrY_paternal_331.15;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.15,hg002_chrY_paternal_331.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000542;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000542;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000542:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15584075	15584227	.	+	.	source_transcript=hg002_chrY_paternal_331.15;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.15,hg002_chrY_paternal_331.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000542;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000542;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000542:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15584075	15584227	.	+	2	source_transcript=hg002_chrY_paternal_331.15;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.15,hg002_chrY_paternal_331.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000542;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000542;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000542:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15584228	15685099	.	+	.	source_transcript=hg002_chrY_paternal_331.15;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.15,hg002_chrY_paternal_331.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000542;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000542;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000542:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15685100	15685285	.	+	.	source_transcript=hg002_chrY_paternal_331.15;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.15,hg002_chrY_paternal_331.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000542;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000542;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000542:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15685100	15685285	.	+	2	source_transcript=hg002_chrY_paternal_331.15;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.15,hg002_chrY_paternal_331.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000542;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000542;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000542:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15685286	15690615	.	+	.	source_transcript=hg002_chrY_paternal_331.15;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.15,hg002_chrY_paternal_331.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000542;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000542;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000542:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15690616	15691405	.	+	.	source_transcript=hg002_chrY_paternal_331.15;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.15,hg002_chrY_paternal_331.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000542;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000542;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000542:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15690616	15691405	.	+	2	source_transcript=hg002_chrY_paternal_331.15;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.15,hg002_chrY_paternal_331.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000542;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000542;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000542:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15691406	15701298	.	+	.	source_transcript=hg002_chrY_paternal_331.15;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.15,hg002_chrY_paternal_331.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000542;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000542;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000542:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15701299	15706540	.	+	.	source_transcript=hg002_chrY_paternal_331.15;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.15,hg002_chrY_paternal_331.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000542;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000542;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000542:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15701299	15702148	.	+	1	source_transcript=hg002_chrY_paternal_331.15;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.15,hg002_chrY_paternal_331.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000542;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000542;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000542:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	15702146	15702148	.	+	0	source_transcript=hg002_chrY_paternal_331.15;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.15,hg002_chrY_paternal_331.15;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000542;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000542;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:HG003_chrY_T0000542;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	15385482	15706540	100	+	.	source_transcript=hg002_chrY_paternal_331.16;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.16;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.16,hg002_chrY_paternal_331.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000543;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_G0000192;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=HG003_chrY_T0000543;Name=NLGN4Y
HG003_chrY	CAT	exon	15385482	15385889	.	+	.	source_transcript=hg002_chrY_paternal_331.16;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.16,hg002_chrY_paternal_331.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000543;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000543;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000543:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15385890	15482976	.	+	.	source_transcript=hg002_chrY_paternal_331.16;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.16,hg002_chrY_paternal_331.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000543;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000543;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000543:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15482977	15483559	.	+	.	source_transcript=hg002_chrY_paternal_331.16;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.16,hg002_chrY_paternal_331.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000543;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000543;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000543:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15483088	15483559	.	+	0	source_transcript=hg002_chrY_paternal_331.16;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.16,hg002_chrY_paternal_331.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000543;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000543;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000543:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	15483088	15483090	.	+	0	source_transcript=hg002_chrY_paternal_331.16;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.16,hg002_chrY_paternal_331.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000543;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000543;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:HG003_chrY_T0000543;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15483560	15584074	.	+	.	source_transcript=hg002_chrY_paternal_331.16;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.16,hg002_chrY_paternal_331.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000543;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000543;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000543:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15584075	15584227	.	+	.	source_transcript=hg002_chrY_paternal_331.16;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.16,hg002_chrY_paternal_331.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000543;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000543;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000543:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15584075	15584227	.	+	2	source_transcript=hg002_chrY_paternal_331.16;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.16,hg002_chrY_paternal_331.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000543;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000543;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000543:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15584228	15685099	.	+	.	source_transcript=hg002_chrY_paternal_331.16;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.16,hg002_chrY_paternal_331.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000543;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000543;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000543:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15685100	15685285	.	+	.	source_transcript=hg002_chrY_paternal_331.16;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.16,hg002_chrY_paternal_331.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000543;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000543;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000543:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15685100	15685285	.	+	2	source_transcript=hg002_chrY_paternal_331.16;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.16,hg002_chrY_paternal_331.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000543;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000543;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000543:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15685286	15690615	.	+	.	source_transcript=hg002_chrY_paternal_331.16;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.16,hg002_chrY_paternal_331.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000543;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000543;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000543:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15690616	15691405	.	+	.	source_transcript=hg002_chrY_paternal_331.16;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.16,hg002_chrY_paternal_331.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000543;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000543;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000543:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15690616	15691405	.	+	2	source_transcript=hg002_chrY_paternal_331.16;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.16,hg002_chrY_paternal_331.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000543;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000543;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000543:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15691406	15701298	.	+	.	source_transcript=hg002_chrY_paternal_331.16;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.16,hg002_chrY_paternal_331.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000543;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000543;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000543:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15701299	15706540	.	+	.	source_transcript=hg002_chrY_paternal_331.16;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.16,hg002_chrY_paternal_331.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000543;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000543;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000543:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15701299	15702148	.	+	1	source_transcript=hg002_chrY_paternal_331.16;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.16,hg002_chrY_paternal_331.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000543;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000543;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000543:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	15702146	15702148	.	+	0	source_transcript=hg002_chrY_paternal_331.16;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.16,hg002_chrY_paternal_331.16;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000543;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000543;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:HG003_chrY_T0000543;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	15385482	15706540	100	+	.	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000544;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_G0000192;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=HG003_chrY_T0000544;Name=NLGN4Y
HG003_chrY	CAT	exon	15385482	15385889	.	+	.	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000544;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000544;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000544:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15385890	15421548	.	+	.	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000544;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000544;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000544:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15421549	15421628	.	+	.	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000544;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000544;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000544:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15421629	15482976	.	+	.	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000544;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000544;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000544:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15482977	15483559	.	+	.	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000544;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000544;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000544:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15483088	15483559	.	+	0	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000544;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000544;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000544:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	15483088	15483090	.	+	0	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000544;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000544;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:HG003_chrY_T0000544;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15483560	15580437	.	+	.	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000544;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000544;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000544:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15580438	15580497	.	+	.	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000544;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000544;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000544:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15580438	15580497	.	+	2	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000544;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000544;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000544:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15580498	15584074	.	+	.	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000544;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000544;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000544:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15584075	15584227	.	+	.	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000544;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000544;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000544:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15584075	15584227	.	+	2	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000544;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000544;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000544:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15584228	15685099	.	+	.	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000544;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000544;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000544:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15685100	15685285	.	+	.	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000544;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000544;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000544:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15685100	15685285	.	+	2	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000544;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000544;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000544:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15685286	15690615	.	+	.	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000544;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000544;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000544:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15690616	15691405	.	+	.	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000544;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000544;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000544:6;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15690616	15691405	.	+	2	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000544;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000544;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000544:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15691406	15701298	.	+	.	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000544;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000544;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000544:6;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15701299	15706540	.	+	.	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000544;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000544;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000544:7;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15701299	15702148	.	+	1	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000544;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000544;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000544:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	15702146	15702148	.	+	0	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000544;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000544;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:HG003_chrY_T0000544;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	15385482	15706540	100	+	.	source_transcript=hg002_chrY_paternal_331.18;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.18;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.18,hg002_chrY_paternal_331.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000545;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_G0000192;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=HG003_chrY_T0000545;Name=NLGN4Y
HG003_chrY	CAT	exon	15385482	15385510	.	+	.	source_transcript=hg002_chrY_paternal_331.18;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.18,hg002_chrY_paternal_331.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000545;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000545;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000545:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15385511	15482976	.	+	.	source_transcript=hg002_chrY_paternal_331.18;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.18,hg002_chrY_paternal_331.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000545;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000545;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000545:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15482977	15483559	.	+	.	source_transcript=hg002_chrY_paternal_331.18;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.18,hg002_chrY_paternal_331.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000545;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000545;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000545:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15483088	15483559	.	+	0	source_transcript=hg002_chrY_paternal_331.18;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.18,hg002_chrY_paternal_331.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000545;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000545;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000545:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	15483088	15483090	.	+	0	source_transcript=hg002_chrY_paternal_331.18;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.18,hg002_chrY_paternal_331.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000545;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000545;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:HG003_chrY_T0000545;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15483560	15580437	.	+	.	source_transcript=hg002_chrY_paternal_331.18;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.18,hg002_chrY_paternal_331.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000545;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000545;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000545:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15580438	15580497	.	+	.	source_transcript=hg002_chrY_paternal_331.18;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.18,hg002_chrY_paternal_331.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000545;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000545;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000545:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15580438	15580497	.	+	2	source_transcript=hg002_chrY_paternal_331.18;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.18,hg002_chrY_paternal_331.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000545;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000545;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000545:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15580498	15584074	.	+	.	source_transcript=hg002_chrY_paternal_331.18;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.18,hg002_chrY_paternal_331.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000545;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000545;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000545:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15584075	15584227	.	+	.	source_transcript=hg002_chrY_paternal_331.18;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.18,hg002_chrY_paternal_331.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000545;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000545;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000545:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15584075	15584227	.	+	2	source_transcript=hg002_chrY_paternal_331.18;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.18,hg002_chrY_paternal_331.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000545;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000545;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000545:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15584228	15685099	.	+	.	source_transcript=hg002_chrY_paternal_331.18;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.18,hg002_chrY_paternal_331.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000545;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000545;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000545:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15685100	15685285	.	+	.	source_transcript=hg002_chrY_paternal_331.18;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.18,hg002_chrY_paternal_331.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000545;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000545;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000545:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15685100	15685285	.	+	2	source_transcript=hg002_chrY_paternal_331.18;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.18,hg002_chrY_paternal_331.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000545;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000545;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000545:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15685286	15690615	.	+	.	source_transcript=hg002_chrY_paternal_331.18;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.18,hg002_chrY_paternal_331.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000545;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000545;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000545:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15690616	15691405	.	+	.	source_transcript=hg002_chrY_paternal_331.18;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.18,hg002_chrY_paternal_331.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000545;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000545;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000545:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15690616	15691405	.	+	2	source_transcript=hg002_chrY_paternal_331.18;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.18,hg002_chrY_paternal_331.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000545;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000545;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000545:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15691406	15701298	.	+	.	source_transcript=hg002_chrY_paternal_331.18;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.18,hg002_chrY_paternal_331.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000545;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000545;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000545:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15701299	15706540	.	+	.	source_transcript=hg002_chrY_paternal_331.18;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.18,hg002_chrY_paternal_331.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000545;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000545;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000545:6;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15701299	15702148	.	+	1	source_transcript=hg002_chrY_paternal_331.18;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.18,hg002_chrY_paternal_331.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000545;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000545;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000545:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	15702146	15702148	.	+	0	source_transcript=hg002_chrY_paternal_331.18;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.18,hg002_chrY_paternal_331.18;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000545;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000545;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:HG003_chrY_T0000545;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	15385482	15706540	100	+	.	source_transcript=hg002_chrY_paternal_331.19;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.19;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.19,hg002_chrY_paternal_331.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000546;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_G0000192;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=HG003_chrY_T0000546;Name=NLGN4Y
HG003_chrY	CAT	exon	15385482	15385889	.	+	.	source_transcript=hg002_chrY_paternal_331.19;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.19,hg002_chrY_paternal_331.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000546;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000546;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000546:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15385890	15421548	.	+	.	source_transcript=hg002_chrY_paternal_331.19;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.19,hg002_chrY_paternal_331.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000546;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000546;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000546:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15421549	15421628	.	+	.	source_transcript=hg002_chrY_paternal_331.19;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.19,hg002_chrY_paternal_331.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000546;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000546;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000546:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15421629	15482976	.	+	.	source_transcript=hg002_chrY_paternal_331.19;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.19,hg002_chrY_paternal_331.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000546;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000546;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000546:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15482977	15483559	.	+	.	source_transcript=hg002_chrY_paternal_331.19;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.19,hg002_chrY_paternal_331.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000546;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000546;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000546:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15483088	15483559	.	+	0	source_transcript=hg002_chrY_paternal_331.19;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.19,hg002_chrY_paternal_331.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000546;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000546;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000546:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	15483088	15483090	.	+	0	source_transcript=hg002_chrY_paternal_331.19;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.19,hg002_chrY_paternal_331.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000546;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000546;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:HG003_chrY_T0000546;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15483560	15584074	.	+	.	source_transcript=hg002_chrY_paternal_331.19;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.19,hg002_chrY_paternal_331.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000546;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000546;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000546:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15584075	15584227	.	+	.	source_transcript=hg002_chrY_paternal_331.19;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.19,hg002_chrY_paternal_331.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000546;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000546;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000546:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15584075	15584227	.	+	2	source_transcript=hg002_chrY_paternal_331.19;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.19,hg002_chrY_paternal_331.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000546;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000546;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000546:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15584228	15685099	.	+	.	source_transcript=hg002_chrY_paternal_331.19;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.19,hg002_chrY_paternal_331.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000546;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000546;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000546:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15685100	15685285	.	+	.	source_transcript=hg002_chrY_paternal_331.19;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.19,hg002_chrY_paternal_331.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000546;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000546;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000546:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15685100	15685285	.	+	2	source_transcript=hg002_chrY_paternal_331.19;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.19,hg002_chrY_paternal_331.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000546;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000546;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000546:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15685286	15690615	.	+	.	source_transcript=hg002_chrY_paternal_331.19;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.19,hg002_chrY_paternal_331.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000546;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000546;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000546:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15690616	15691405	.	+	.	source_transcript=hg002_chrY_paternal_331.19;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.19,hg002_chrY_paternal_331.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000546;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000546;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000546:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15690616	15691405	.	+	2	source_transcript=hg002_chrY_paternal_331.19;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.19,hg002_chrY_paternal_331.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000546;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000546;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000546:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15691406	15701298	.	+	.	source_transcript=hg002_chrY_paternal_331.19;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.19,hg002_chrY_paternal_331.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000546;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000546;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000546:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15701299	15706540	.	+	.	source_transcript=hg002_chrY_paternal_331.19;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.19,hg002_chrY_paternal_331.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000546;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000546;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000546:6;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15701299	15702148	.	+	1	source_transcript=hg002_chrY_paternal_331.19;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.19,hg002_chrY_paternal_331.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000546;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000546;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000546:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	15702146	15702148	.	+	0	source_transcript=hg002_chrY_paternal_331.19;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.19,hg002_chrY_paternal_331.19;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000546;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000546;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:HG003_chrY_T0000546;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	15385482	15594509	100	+	.	source_transcript=hg002_chrY_paternal_331.9;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.9;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.9,hg002_chrY_paternal_331.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000547;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_G0000192;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=HG003_chrY_T0000547;Name=NLGN4Y
HG003_chrY	CAT	exon	15385482	15385661	.	+	.	source_transcript=hg002_chrY_paternal_331.9;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.9,hg002_chrY_paternal_331.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000547;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000547;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000547:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15385662	15482976	.	+	.	source_transcript=hg002_chrY_paternal_331.9;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.9,hg002_chrY_paternal_331.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000547;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000547;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000547:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15482977	15483559	.	+	.	source_transcript=hg002_chrY_paternal_331.9;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.9,hg002_chrY_paternal_331.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000547;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000547;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000547:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15483088	15483559	.	+	0	source_transcript=hg002_chrY_paternal_331.9;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.9,hg002_chrY_paternal_331.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000547;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000547;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000547:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	15483088	15483090	.	+	0	source_transcript=hg002_chrY_paternal_331.9;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.9,hg002_chrY_paternal_331.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000547;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000547;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:HG003_chrY_T0000547;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15483560	15580437	.	+	.	source_transcript=hg002_chrY_paternal_331.9;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.9,hg002_chrY_paternal_331.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000547;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000547;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000547:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15580438	15580497	.	+	.	source_transcript=hg002_chrY_paternal_331.9;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.9,hg002_chrY_paternal_331.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000547;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000547;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000547:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15580438	15580497	.	+	2	source_transcript=hg002_chrY_paternal_331.9;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.9,hg002_chrY_paternal_331.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000547;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000547;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000547:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15580498	15584074	.	+	.	source_transcript=hg002_chrY_paternal_331.9;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.9,hg002_chrY_paternal_331.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000547;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000547;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000547:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15584075	15584227	.	+	.	source_transcript=hg002_chrY_paternal_331.9;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.9,hg002_chrY_paternal_331.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000547;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000547;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000547:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15584075	15584227	.	+	2	source_transcript=hg002_chrY_paternal_331.9;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.9,hg002_chrY_paternal_331.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000547;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000547;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000547:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15584228	15594411	.	+	.	source_transcript=hg002_chrY_paternal_331.9;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.9,hg002_chrY_paternal_331.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000547;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000547;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000547:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15594412	15594509	.	+	.	source_transcript=hg002_chrY_paternal_331.9;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.9,hg002_chrY_paternal_331.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000547;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000547;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000547:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15594412	15594497	.	+	2	source_transcript=hg002_chrY_paternal_331.9;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.9,hg002_chrY_paternal_331.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000547;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000547;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000547:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	15594495	15594497	.	+	0	source_transcript=hg002_chrY_paternal_331.9;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.9,hg002_chrY_paternal_331.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000547;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000547;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:HG003_chrY_T0000547;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	15414691	15706540	100	+	.	source_transcript=hg002_chrY_paternal_331.20;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.20;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.20,hg002_chrY_paternal_331.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000548;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_G0000192;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=HG003_chrY_T0000548;Name=NLGN4Y
HG003_chrY	CAT	exon	15414691	15421628	.	+	.	source_transcript=hg002_chrY_paternal_331.20;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.20,hg002_chrY_paternal_331.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000548;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000548;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000548:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15421629	15482976	.	+	.	source_transcript=hg002_chrY_paternal_331.20;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.20,hg002_chrY_paternal_331.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000548;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000548;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000548:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15482977	15483559	.	+	.	source_transcript=hg002_chrY_paternal_331.20;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.20,hg002_chrY_paternal_331.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000548;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000548;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000548:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15483088	15483559	.	+	0	source_transcript=hg002_chrY_paternal_331.20;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.20,hg002_chrY_paternal_331.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000548;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000548;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000548:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	15483088	15483090	.	+	0	source_transcript=hg002_chrY_paternal_331.20;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.20,hg002_chrY_paternal_331.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000548;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000548;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:HG003_chrY_T0000548;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15483560	15580437	.	+	.	source_transcript=hg002_chrY_paternal_331.20;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.20,hg002_chrY_paternal_331.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000548;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000548;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000548:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15580438	15580497	.	+	.	source_transcript=hg002_chrY_paternal_331.20;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.20,hg002_chrY_paternal_331.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000548;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000548;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000548:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15580438	15580497	.	+	2	source_transcript=hg002_chrY_paternal_331.20;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.20,hg002_chrY_paternal_331.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000548;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000548;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000548:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15580498	15584074	.	+	.	source_transcript=hg002_chrY_paternal_331.20;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.20,hg002_chrY_paternal_331.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000548;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000548;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000548:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15584075	15584227	.	+	.	source_transcript=hg002_chrY_paternal_331.20;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.20,hg002_chrY_paternal_331.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000548;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000548;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000548:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15584075	15584227	.	+	2	source_transcript=hg002_chrY_paternal_331.20;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.20,hg002_chrY_paternal_331.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000548;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000548;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000548:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15584228	15685099	.	+	.	source_transcript=hg002_chrY_paternal_331.20;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.20,hg002_chrY_paternal_331.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000548;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000548;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000548:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15685100	15685285	.	+	.	source_transcript=hg002_chrY_paternal_331.20;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.20,hg002_chrY_paternal_331.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000548;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000548;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000548:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15685100	15685285	.	+	2	source_transcript=hg002_chrY_paternal_331.20;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.20,hg002_chrY_paternal_331.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000548;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000548;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000548:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15685286	15690615	.	+	.	source_transcript=hg002_chrY_paternal_331.20;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.20,hg002_chrY_paternal_331.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000548;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000548;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000548:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15690616	15691405	.	+	.	source_transcript=hg002_chrY_paternal_331.20;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.20,hg002_chrY_paternal_331.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000548;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000548;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000548:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15690616	15691405	.	+	2	source_transcript=hg002_chrY_paternal_331.20;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.20,hg002_chrY_paternal_331.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000548;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000548;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000548:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15691406	15701298	.	+	.	source_transcript=hg002_chrY_paternal_331.20;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.20,hg002_chrY_paternal_331.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000548;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000548;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000548:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15701299	15706540	.	+	.	source_transcript=hg002_chrY_paternal_331.20;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.20,hg002_chrY_paternal_331.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000548;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000548;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000548:6;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15701299	15702148	.	+	1	source_transcript=hg002_chrY_paternal_331.20;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.20,hg002_chrY_paternal_331.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000548;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000548;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000548:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	15702146	15702148	.	+	0	source_transcript=hg002_chrY_paternal_331.20;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.20,hg002_chrY_paternal_331.20;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000548;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000548;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:HG003_chrY_T0000548;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	15443557	15706540	100	+	.	source_transcript=hg002_chrY_paternal_331.21;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.21;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.21,hg002_chrY_paternal_331.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000549;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_G0000192;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=HG003_chrY_T0000549;Name=NLGN4Y
HG003_chrY	CAT	exon	15443557	15445259	.	+	.	source_transcript=hg002_chrY_paternal_331.21;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.21,hg002_chrY_paternal_331.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000549;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000549;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000549:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15445260	15482976	.	+	.	source_transcript=hg002_chrY_paternal_331.21;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.21,hg002_chrY_paternal_331.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000549;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000549;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000549:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15482977	15483559	.	+	.	source_transcript=hg002_chrY_paternal_331.21;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.21,hg002_chrY_paternal_331.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000549;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000549;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000549:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15483088	15483559	.	+	0	source_transcript=hg002_chrY_paternal_331.21;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.21,hg002_chrY_paternal_331.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000549;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000549;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000549:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	15483088	15483090	.	+	0	source_transcript=hg002_chrY_paternal_331.21;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.21,hg002_chrY_paternal_331.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000549;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000549;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:HG003_chrY_T0000549;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15483560	15580437	.	+	.	source_transcript=hg002_chrY_paternal_331.21;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.21,hg002_chrY_paternal_331.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000549;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000549;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000549:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15580438	15580497	.	+	.	source_transcript=hg002_chrY_paternal_331.21;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.21,hg002_chrY_paternal_331.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000549;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000549;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000549:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15580438	15580497	.	+	2	source_transcript=hg002_chrY_paternal_331.21;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.21,hg002_chrY_paternal_331.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000549;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000549;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000549:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15580498	15584074	.	+	.	source_transcript=hg002_chrY_paternal_331.21;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.21,hg002_chrY_paternal_331.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000549;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000549;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000549:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15584075	15584227	.	+	.	source_transcript=hg002_chrY_paternal_331.21;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.21,hg002_chrY_paternal_331.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000549;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000549;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000549:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15584075	15584227	.	+	2	source_transcript=hg002_chrY_paternal_331.21;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.21,hg002_chrY_paternal_331.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000549;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000549;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000549:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15584228	15685099	.	+	.	source_transcript=hg002_chrY_paternal_331.21;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.21,hg002_chrY_paternal_331.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000549;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000549;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000549:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15685100	15685285	.	+	.	source_transcript=hg002_chrY_paternal_331.21;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.21,hg002_chrY_paternal_331.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000549;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000549;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000549:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15685100	15685285	.	+	2	source_transcript=hg002_chrY_paternal_331.21;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.21,hg002_chrY_paternal_331.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000549;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000549;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000549:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15685286	15690615	.	+	.	source_transcript=hg002_chrY_paternal_331.21;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.21,hg002_chrY_paternal_331.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000549;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000549;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000549:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15690616	15691405	.	+	.	source_transcript=hg002_chrY_paternal_331.21;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.21,hg002_chrY_paternal_331.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000549;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000549;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000549:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15690616	15691405	.	+	2	source_transcript=hg002_chrY_paternal_331.21;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.21,hg002_chrY_paternal_331.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000549;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000549;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000549:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15691406	15701298	.	+	.	source_transcript=hg002_chrY_paternal_331.21;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.21,hg002_chrY_paternal_331.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000549;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000549;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000549:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15701299	15706540	.	+	.	source_transcript=hg002_chrY_paternal_331.21;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.21,hg002_chrY_paternal_331.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000549;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000549;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000549:6;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15701299	15702148	.	+	1	source_transcript=hg002_chrY_paternal_331.21;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.21,hg002_chrY_paternal_331.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000549;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000549;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000549:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	15702146	15702148	.	+	0	source_transcript=hg002_chrY_paternal_331.21;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.21,hg002_chrY_paternal_331.21;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000549;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000549;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:HG003_chrY_T0000549;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	15443557	15706540	100	+	.	source_transcript=hg002_chrY_paternal_331.22;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.22;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.22,hg002_chrY_paternal_331.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000550;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_G0000192;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=HG003_chrY_T0000550;Name=NLGN4Y
HG003_chrY	CAT	exon	15443557	15445259	.	+	.	source_transcript=hg002_chrY_paternal_331.22;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.22,hg002_chrY_paternal_331.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000550;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000550;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000550:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15445260	15482976	.	+	.	source_transcript=hg002_chrY_paternal_331.22;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.22,hg002_chrY_paternal_331.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000550;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000550;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000550:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15482977	15483559	.	+	.	source_transcript=hg002_chrY_paternal_331.22;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.22,hg002_chrY_paternal_331.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000550;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000550;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000550:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15483088	15483559	.	+	0	source_transcript=hg002_chrY_paternal_331.22;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.22,hg002_chrY_paternal_331.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000550;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000550;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000550:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	15483088	15483090	.	+	0	source_transcript=hg002_chrY_paternal_331.22;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.22,hg002_chrY_paternal_331.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000550;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000550;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:HG003_chrY_T0000550;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15483560	15584074	.	+	.	source_transcript=hg002_chrY_paternal_331.22;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.22,hg002_chrY_paternal_331.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000550;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000550;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000550:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15584075	15584227	.	+	.	source_transcript=hg002_chrY_paternal_331.22;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.22,hg002_chrY_paternal_331.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000550;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000550;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000550:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15584075	15584227	.	+	2	source_transcript=hg002_chrY_paternal_331.22;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.22,hg002_chrY_paternal_331.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000550;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000550;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000550:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15584228	15685099	.	+	.	source_transcript=hg002_chrY_paternal_331.22;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.22,hg002_chrY_paternal_331.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000550;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000550;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000550:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15685100	15685285	.	+	.	source_transcript=hg002_chrY_paternal_331.22;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.22,hg002_chrY_paternal_331.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000550;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000550;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000550:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15685100	15685285	.	+	2	source_transcript=hg002_chrY_paternal_331.22;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.22,hg002_chrY_paternal_331.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000550;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000550;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000550:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15685286	15690615	.	+	.	source_transcript=hg002_chrY_paternal_331.22;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.22,hg002_chrY_paternal_331.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000550;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000550;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000550:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15690616	15691405	.	+	.	source_transcript=hg002_chrY_paternal_331.22;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.22,hg002_chrY_paternal_331.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000550;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000550;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000550:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15690616	15691405	.	+	2	source_transcript=hg002_chrY_paternal_331.22;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.22,hg002_chrY_paternal_331.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000550;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000550;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000550:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15691406	15701298	.	+	.	source_transcript=hg002_chrY_paternal_331.22;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.22,hg002_chrY_paternal_331.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000550;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000550;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000550:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15701299	15706540	.	+	.	source_transcript=hg002_chrY_paternal_331.22;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.22,hg002_chrY_paternal_331.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000550;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000550;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000550:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15701299	15702148	.	+	1	source_transcript=hg002_chrY_paternal_331.22;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.22,hg002_chrY_paternal_331.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000550;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000550;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000550:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	15702146	15702148	.	+	0	source_transcript=hg002_chrY_paternal_331.22;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.22,hg002_chrY_paternal_331.22;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000550;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000550;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:HG003_chrY_T0000550;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	15448578	15706540	100	+	.	source_transcript=hg002_chrY_paternal_331.23;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.23;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.23,hg002_chrY_paternal_331.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000551;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_G0000192;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=HG003_chrY_T0000551;Name=NLGN4Y
HG003_chrY	CAT	exon	15448578	15448682	.	+	.	source_transcript=hg002_chrY_paternal_331.23;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.23,hg002_chrY_paternal_331.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000551;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000551;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000551:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15448683	15482976	.	+	.	source_transcript=hg002_chrY_paternal_331.23;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.23,hg002_chrY_paternal_331.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000551;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000551;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000551:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15482977	15483559	.	+	.	source_transcript=hg002_chrY_paternal_331.23;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.23,hg002_chrY_paternal_331.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000551;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000551;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000551:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15483088	15483559	.	+	0	source_transcript=hg002_chrY_paternal_331.23;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.23,hg002_chrY_paternal_331.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000551;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000551;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000551:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	15483088	15483090	.	+	0	source_transcript=hg002_chrY_paternal_331.23;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.23,hg002_chrY_paternal_331.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000551;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000551;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:HG003_chrY_T0000551;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15483560	15580437	.	+	.	source_transcript=hg002_chrY_paternal_331.23;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.23,hg002_chrY_paternal_331.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000551;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000551;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000551:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15580438	15580497	.	+	.	source_transcript=hg002_chrY_paternal_331.23;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.23,hg002_chrY_paternal_331.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000551;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000551;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000551:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15580438	15580497	.	+	2	source_transcript=hg002_chrY_paternal_331.23;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.23,hg002_chrY_paternal_331.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000551;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000551;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000551:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15580498	15584074	.	+	.	source_transcript=hg002_chrY_paternal_331.23;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.23,hg002_chrY_paternal_331.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000551;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000551;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000551:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15584075	15584227	.	+	.	source_transcript=hg002_chrY_paternal_331.23;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.23,hg002_chrY_paternal_331.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000551;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000551;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000551:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15584075	15584227	.	+	2	source_transcript=hg002_chrY_paternal_331.23;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.23,hg002_chrY_paternal_331.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000551;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000551;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000551:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15584228	15685099	.	+	.	source_transcript=hg002_chrY_paternal_331.23;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.23,hg002_chrY_paternal_331.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000551;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000551;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000551:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15685100	15685285	.	+	.	source_transcript=hg002_chrY_paternal_331.23;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.23,hg002_chrY_paternal_331.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000551;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000551;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000551:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15685100	15685285	.	+	2	source_transcript=hg002_chrY_paternal_331.23;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.23,hg002_chrY_paternal_331.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000551;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000551;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000551:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15685286	15690615	.	+	.	source_transcript=hg002_chrY_paternal_331.23;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.23,hg002_chrY_paternal_331.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000551;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000551;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000551:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15690616	15691405	.	+	.	source_transcript=hg002_chrY_paternal_331.23;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.23,hg002_chrY_paternal_331.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000551;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000551;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000551:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15690616	15691405	.	+	2	source_transcript=hg002_chrY_paternal_331.23;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.23,hg002_chrY_paternal_331.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000551;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000551;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000551:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15691406	15701298	.	+	.	source_transcript=hg002_chrY_paternal_331.23;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.23,hg002_chrY_paternal_331.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000551;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000551;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000551:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15701299	15706540	.	+	.	source_transcript=hg002_chrY_paternal_331.23;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.23,hg002_chrY_paternal_331.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000551;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000551;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000551:6;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15701299	15702148	.	+	1	source_transcript=hg002_chrY_paternal_331.23;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.23,hg002_chrY_paternal_331.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000551;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000551;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000551:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	15702146	15702148	.	+	0	source_transcript=hg002_chrY_paternal_331.23;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.23,hg002_chrY_paternal_331.23;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000551;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000551;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:HG003_chrY_T0000551;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	15482977	15706540	100	+	.	source_transcript=hg002_chrY_paternal_331.24;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.24;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.24,hg002_chrY_paternal_331.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000552;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_G0000192;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=HG003_chrY_T0000552;Name=NLGN4Y
HG003_chrY	CAT	exon	15482977	15483559	.	+	.	source_transcript=hg002_chrY_paternal_331.24;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.24,hg002_chrY_paternal_331.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000552;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000552;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000552:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15483560	15562017	.	+	.	source_transcript=hg002_chrY_paternal_331.24;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.24,hg002_chrY_paternal_331.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000552;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000552;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000552:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15562018	15562111	.	+	.	source_transcript=hg002_chrY_paternal_331.24;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.24,hg002_chrY_paternal_331.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000552;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000552;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000552:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15562075	15562111	.	+	0	source_transcript=hg002_chrY_paternal_331.24;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.24,hg002_chrY_paternal_331.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000552;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000552;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000552:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	15562075	15562077	.	+	0	source_transcript=hg002_chrY_paternal_331.24;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.24,hg002_chrY_paternal_331.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000552;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000552;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:HG003_chrY_T0000552;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15562112	15580437	.	+	.	source_transcript=hg002_chrY_paternal_331.24;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.24,hg002_chrY_paternal_331.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000552;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000552;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000552:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15580438	15580497	.	+	.	source_transcript=hg002_chrY_paternal_331.24;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.24,hg002_chrY_paternal_331.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000552;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000552;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000552:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15580438	15580497	.	+	2	source_transcript=hg002_chrY_paternal_331.24;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.24,hg002_chrY_paternal_331.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000552;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000552;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000552:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15580498	15584074	.	+	.	source_transcript=hg002_chrY_paternal_331.24;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.24,hg002_chrY_paternal_331.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000552;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000552;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000552:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15584075	15584227	.	+	.	source_transcript=hg002_chrY_paternal_331.24;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.24,hg002_chrY_paternal_331.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000552;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000552;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000552:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15584075	15584227	.	+	2	source_transcript=hg002_chrY_paternal_331.24;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.24,hg002_chrY_paternal_331.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000552;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000552;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000552:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15584228	15685099	.	+	.	source_transcript=hg002_chrY_paternal_331.24;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.24,hg002_chrY_paternal_331.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000552;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000552;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000552:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15685100	15685285	.	+	.	source_transcript=hg002_chrY_paternal_331.24;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.24,hg002_chrY_paternal_331.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000552;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000552;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000552:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15685100	15685285	.	+	2	source_transcript=hg002_chrY_paternal_331.24;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.24,hg002_chrY_paternal_331.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000552;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000552;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000552:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15685286	15690615	.	+	.	source_transcript=hg002_chrY_paternal_331.24;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.24,hg002_chrY_paternal_331.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000552;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000552;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000552:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15690616	15691405	.	+	.	source_transcript=hg002_chrY_paternal_331.24;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.24,hg002_chrY_paternal_331.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000552;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000552;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000552:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15690616	15691405	.	+	2	source_transcript=hg002_chrY_paternal_331.24;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.24,hg002_chrY_paternal_331.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000552;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000552;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000552:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15691406	15701298	.	+	.	source_transcript=hg002_chrY_paternal_331.24;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.24,hg002_chrY_paternal_331.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000552;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000552;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000552:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15701299	15706540	.	+	.	source_transcript=hg002_chrY_paternal_331.24;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.24,hg002_chrY_paternal_331.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000552;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000552;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000552:6;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15701299	15702148	.	+	1	source_transcript=hg002_chrY_paternal_331.24;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.24,hg002_chrY_paternal_331.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000552;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000552;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000552:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	15702146	15702148	.	+	0	source_transcript=hg002_chrY_paternal_331.24;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.24,hg002_chrY_paternal_331.24;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000552;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000552;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:HG003_chrY_T0000552;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	15482989	15594509	100	+	.	source_transcript=hg002_chrY_paternal_331.25;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.25;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.25,hg002_chrY_paternal_331.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000553;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_G0000192;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=HG003_chrY_T0000553;Name=NLGN4Y
HG003_chrY	CAT	exon	15482989	15483559	.	+	.	source_transcript=hg002_chrY_paternal_331.25;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.25,hg002_chrY_paternal_331.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000553;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000553;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000553:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15483088	15483559	.	+	0	source_transcript=hg002_chrY_paternal_331.25;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.25,hg002_chrY_paternal_331.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000553;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000553;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000553:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	15483088	15483090	.	+	0	source_transcript=hg002_chrY_paternal_331.25;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.25,hg002_chrY_paternal_331.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000553;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000553;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:HG003_chrY_T0000553;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15483560	15580437	.	+	.	source_transcript=hg002_chrY_paternal_331.25;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.25,hg002_chrY_paternal_331.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000553;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000553;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000553:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15580438	15580497	.	+	.	source_transcript=hg002_chrY_paternal_331.25;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.25,hg002_chrY_paternal_331.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000553;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000553;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000553:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15580438	15580497	.	+	2	source_transcript=hg002_chrY_paternal_331.25;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.25,hg002_chrY_paternal_331.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000553;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000553;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000553:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15580498	15584074	.	+	.	source_transcript=hg002_chrY_paternal_331.25;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.25,hg002_chrY_paternal_331.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000553;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000553;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000553:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15584075	15584227	.	+	.	source_transcript=hg002_chrY_paternal_331.25;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.25,hg002_chrY_paternal_331.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000553;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000553;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000553:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15584075	15584227	.	+	2	source_transcript=hg002_chrY_paternal_331.25;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.25,hg002_chrY_paternal_331.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000553;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000553;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000553:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15584228	15594411	.	+	.	source_transcript=hg002_chrY_paternal_331.25;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.25,hg002_chrY_paternal_331.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000553;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000553;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000553:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15594412	15594509	.	+	.	source_transcript=hg002_chrY_paternal_331.25;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.25,hg002_chrY_paternal_331.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000553;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000553;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000553:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15594412	15594497	.	+	2	source_transcript=hg002_chrY_paternal_331.25;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.25,hg002_chrY_paternal_331.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000553;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000553;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000553:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	15594495	15594497	.	+	0	source_transcript=hg002_chrY_paternal_331.25;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.25,hg002_chrY_paternal_331.25;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000553;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000553;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:HG003_chrY_T0000553;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	15565764	15706540	100	+	.	source_transcript=hg002_chrY_paternal_331.26;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.26;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.26,hg002_chrY_paternal_331.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000554;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_G0000192;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=HG003_chrY_T0000554;Name=NLGN4Y
HG003_chrY	CAT	exon	15565764	15565784	.	+	.	source_transcript=hg002_chrY_paternal_331.26;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.26,hg002_chrY_paternal_331.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000554;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000554;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000554:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15565785	15580437	.	+	.	source_transcript=hg002_chrY_paternal_331.26;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.26,hg002_chrY_paternal_331.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000554;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000554;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000554:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15580438	15580497	.	+	.	source_transcript=hg002_chrY_paternal_331.26;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.26,hg002_chrY_paternal_331.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000554;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000554;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000554:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15580498	15584074	.	+	.	source_transcript=hg002_chrY_paternal_331.26;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.26,hg002_chrY_paternal_331.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000554;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000554;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000554:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15584075	15584227	.	+	.	source_transcript=hg002_chrY_paternal_331.26;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.26,hg002_chrY_paternal_331.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000554;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000554;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000554:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15584107	15584227	.	+	0	source_transcript=hg002_chrY_paternal_331.26;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.26,hg002_chrY_paternal_331.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000554;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000554;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000554:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	15584107	15584109	.	+	0	source_transcript=hg002_chrY_paternal_331.26;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.26,hg002_chrY_paternal_331.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000554;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000554;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:HG003_chrY_T0000554;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15584228	15685099	.	+	.	source_transcript=hg002_chrY_paternal_331.26;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.26,hg002_chrY_paternal_331.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000554;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000554;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000554:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15685100	15685285	.	+	.	source_transcript=hg002_chrY_paternal_331.26;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.26,hg002_chrY_paternal_331.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000554;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000554;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000554:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15685100	15685285	.	+	2	source_transcript=hg002_chrY_paternal_331.26;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.26,hg002_chrY_paternal_331.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000554;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000554;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000554:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15685286	15690615	.	+	.	source_transcript=hg002_chrY_paternal_331.26;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.26,hg002_chrY_paternal_331.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000554;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000554;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000554:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15690616	15691405	.	+	.	source_transcript=hg002_chrY_paternal_331.26;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.26,hg002_chrY_paternal_331.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000554;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000554;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000554:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15690616	15691405	.	+	2	source_transcript=hg002_chrY_paternal_331.26;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.26,hg002_chrY_paternal_331.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000554;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000554;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000554:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15691406	15701298	.	+	.	source_transcript=hg002_chrY_paternal_331.26;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.26,hg002_chrY_paternal_331.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000554;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000554;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0000554:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15701299	15706540	.	+	.	source_transcript=hg002_chrY_paternal_331.26;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.26,hg002_chrY_paternal_331.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000554;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000554;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0000554:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15701299	15702148	.	+	1	source_transcript=hg002_chrY_paternal_331.26;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.26,hg002_chrY_paternal_331.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000554;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000554;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0000554:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	15702146	15702148	.	+	0	source_transcript=hg002_chrY_paternal_331.26;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.26,hg002_chrY_paternal_331.26;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000554;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000554;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:HG003_chrY_T0000554;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	15654595	15664945	.	-	.	source_gene_common_name=NLGN4Y-AS1;source_gene=hg002_chrY_paternal_333;alternative_source_transcripts=hg002_chrY_paternal_333.1,hg002_chrY_paternal_333.1;gene_id=HG003_chrY_G0000193;gene_biotype=lncRNA;gene_name=NLGN4Y-AS1;gene_sources=liftoff;ID=HG003_chrY_G0000193;Name=NLGN4Y-AS1
HG003_chrY	CAT	transcript	15654595	15664945	1000	-	.	source_transcript=hg002_chrY_paternal_333.1;source_transcript_name=hg002_chrY_paternal_333.1;source_gene=hg002_chrY_paternal_333;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_333;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_333.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_333.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y-AS1;alternative_source_transcripts=hg002_chrY_paternal_333.1,hg002_chrY_paternal_333.1;transcript_id=HG003_chrY_T0000555;gene_id=HG003_chrY_G0000193;Parent=HG003_chrY_G0000193;transcript_name=hg002_chrY_paternal_333.1;gene_name=NLGN4Y-AS1;ID=HG003_chrY_T0000555;Name=NLGN4Y-AS1
HG003_chrY	CAT	exon	15654595	15654940	.	-	.	source_transcript=hg002_chrY_paternal_333.1;source_transcript_name=hg002_chrY_paternal_333.1;source_gene=hg002_chrY_paternal_333;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_333;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_333.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y-AS1;alternative_source_transcripts=hg002_chrY_paternal_333.1,hg002_chrY_paternal_333.1;transcript_id=HG003_chrY_T0000555;gene_id=HG003_chrY_G0000193;Parent=HG003_chrY_T0000555;transcript_name=hg002_chrY_paternal_333.1;gene_name=NLGN4Y-AS1;ID=exon:HG003_chrY_T0000555:0;Name=NLGN4Y-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15654941	15659576	.	-	.	source_transcript=hg002_chrY_paternal_333.1;source_transcript_name=hg002_chrY_paternal_333.1;source_gene=hg002_chrY_paternal_333;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_333;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_333.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y-AS1;alternative_source_transcripts=hg002_chrY_paternal_333.1,hg002_chrY_paternal_333.1;transcript_id=HG003_chrY_T0000555;gene_id=HG003_chrY_G0000193;Parent=HG003_chrY_T0000555;transcript_name=hg002_chrY_paternal_333.1;gene_name=NLGN4Y-AS1;ID=intron:HG003_chrY_T0000555:0;Name=NLGN4Y-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15659577	15659664	.	-	.	source_transcript=hg002_chrY_paternal_333.1;source_transcript_name=hg002_chrY_paternal_333.1;source_gene=hg002_chrY_paternal_333;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_333;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_333.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y-AS1;alternative_source_transcripts=hg002_chrY_paternal_333.1,hg002_chrY_paternal_333.1;transcript_id=HG003_chrY_T0000555;gene_id=HG003_chrY_G0000193;Parent=HG003_chrY_T0000555;transcript_name=hg002_chrY_paternal_333.1;gene_name=NLGN4Y-AS1;ID=exon:HG003_chrY_T0000555:1;Name=NLGN4Y-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15659665	15662230	.	-	.	source_transcript=hg002_chrY_paternal_333.1;source_transcript_name=hg002_chrY_paternal_333.1;source_gene=hg002_chrY_paternal_333;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_333;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_333.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y-AS1;alternative_source_transcripts=hg002_chrY_paternal_333.1,hg002_chrY_paternal_333.1;transcript_id=HG003_chrY_T0000555;gene_id=HG003_chrY_G0000193;Parent=HG003_chrY_T0000555;transcript_name=hg002_chrY_paternal_333.1;gene_name=NLGN4Y-AS1;ID=intron:HG003_chrY_T0000555:1;Name=NLGN4Y-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15662231	15662299	.	-	.	source_transcript=hg002_chrY_paternal_333.1;source_transcript_name=hg002_chrY_paternal_333.1;source_gene=hg002_chrY_paternal_333;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_333;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_333.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y-AS1;alternative_source_transcripts=hg002_chrY_paternal_333.1,hg002_chrY_paternal_333.1;transcript_id=HG003_chrY_T0000555;gene_id=HG003_chrY_G0000193;Parent=HG003_chrY_T0000555;transcript_name=hg002_chrY_paternal_333.1;gene_name=NLGN4Y-AS1;ID=exon:HG003_chrY_T0000555:2;Name=NLGN4Y-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15662300	15664916	.	-	.	source_transcript=hg002_chrY_paternal_333.1;source_transcript_name=hg002_chrY_paternal_333.1;source_gene=hg002_chrY_paternal_333;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_333;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_333.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y-AS1;alternative_source_transcripts=hg002_chrY_paternal_333.1,hg002_chrY_paternal_333.1;transcript_id=HG003_chrY_T0000555;gene_id=HG003_chrY_G0000193;Parent=HG003_chrY_T0000555;transcript_name=hg002_chrY_paternal_333.1;gene_name=NLGN4Y-AS1;ID=intron:HG003_chrY_T0000555:2;Name=NLGN4Y-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15664917	15664945	.	-	.	source_transcript=hg002_chrY_paternal_333.1;source_transcript_name=hg002_chrY_paternal_333.1;source_gene=hg002_chrY_paternal_333;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_333;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_333.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y-AS1;alternative_source_transcripts=hg002_chrY_paternal_333.1,hg002_chrY_paternal_333.1;transcript_id=HG003_chrY_T0000555;gene_id=HG003_chrY_G0000193;Parent=HG003_chrY_T0000555;transcript_name=hg002_chrY_paternal_333.1;gene_name=NLGN4Y-AS1;ID=exon:HG003_chrY_T0000555:3;Name=NLGN4Y-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	16107958	16225966	.	-	.	source_gene_common_name=LOC107987355;source_gene=hg002_chrY_paternal_336;alternative_source_transcripts=hg002_chrY_paternal_336.1,hg002_chrY_paternal_336.1;gene_id=HG003_chrY_G0000194;gene_biotype=lncRNA;gene_name=LOC107987355;gene_sources=liftoff;ID=HG003_chrY_G0000194;Name=LOC107987355
HG003_chrY	CAT	transcript	16107958	16225966	1000	-	.	source_transcript=hg002_chrY_paternal_336.1;source_transcript_name=hg002_chrY_paternal_336.1;source_gene=hg002_chrY_paternal_336;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_336;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_336.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_336.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987355;alternative_source_transcripts=hg002_chrY_paternal_336.1,hg002_chrY_paternal_336.1;transcript_id=HG003_chrY_T0000556;gene_id=HG003_chrY_G0000194;Parent=HG003_chrY_G0000194;transcript_name=hg002_chrY_paternal_336.1;gene_name=LOC107987355;ID=HG003_chrY_T0000556;Name=LOC107987355
HG003_chrY	CAT	exon	16107958	16108030	.	-	.	source_transcript=hg002_chrY_paternal_336.1;source_transcript_name=hg002_chrY_paternal_336.1;source_gene=hg002_chrY_paternal_336;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_336;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_336.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_336.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987355;alternative_source_transcripts=hg002_chrY_paternal_336.1,hg002_chrY_paternal_336.1;transcript_id=HG003_chrY_T0000556;gene_id=HG003_chrY_G0000194;Parent=HG003_chrY_T0000556;transcript_name=hg002_chrY_paternal_336.1;gene_name=LOC107987355;ID=exon:HG003_chrY_T0000556:0;Name=LOC107987355;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	16108031	16209501	.	-	.	source_transcript=hg002_chrY_paternal_336.1;source_transcript_name=hg002_chrY_paternal_336.1;source_gene=hg002_chrY_paternal_336;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_336;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_336.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_336.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987355;alternative_source_transcripts=hg002_chrY_paternal_336.1,hg002_chrY_paternal_336.1;transcript_id=HG003_chrY_T0000556;gene_id=HG003_chrY_G0000194;Parent=HG003_chrY_T0000556;transcript_name=hg002_chrY_paternal_336.1;gene_name=LOC107987355;ID=intron:HG003_chrY_T0000556:0;Name=LOC107987355;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	16209502	16209724	.	-	.	source_transcript=hg002_chrY_paternal_336.1;source_transcript_name=hg002_chrY_paternal_336.1;source_gene=hg002_chrY_paternal_336;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_336;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_336.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_336.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987355;alternative_source_transcripts=hg002_chrY_paternal_336.1,hg002_chrY_paternal_336.1;transcript_id=HG003_chrY_T0000556;gene_id=HG003_chrY_G0000194;Parent=HG003_chrY_T0000556;transcript_name=hg002_chrY_paternal_336.1;gene_name=LOC107987355;ID=exon:HG003_chrY_T0000556:1;Name=LOC107987355;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	16209725	16225880	.	-	.	source_transcript=hg002_chrY_paternal_336.1;source_transcript_name=hg002_chrY_paternal_336.1;source_gene=hg002_chrY_paternal_336;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_336;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_336.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_336.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987355;alternative_source_transcripts=hg002_chrY_paternal_336.1,hg002_chrY_paternal_336.1;transcript_id=HG003_chrY_T0000556;gene_id=HG003_chrY_G0000194;Parent=HG003_chrY_T0000556;transcript_name=hg002_chrY_paternal_336.1;gene_name=LOC107987355;ID=intron:HG003_chrY_T0000556:1;Name=LOC107987355;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	16225881	16225966	.	-	.	source_transcript=hg002_chrY_paternal_336.1;source_transcript_name=hg002_chrY_paternal_336.1;source_gene=hg002_chrY_paternal_336;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_336;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_336.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_336.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987355;alternative_source_transcripts=hg002_chrY_paternal_336.1,hg002_chrY_paternal_336.1;transcript_id=HG003_chrY_T0000556;gene_id=HG003_chrY_G0000194;Parent=HG003_chrY_T0000556;transcript_name=hg002_chrY_paternal_336.1;gene_name=LOC107987355;ID=exon:HG003_chrY_T0000556:2;Name=LOC107987355;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	16999095	16999226	.	-	.	source_gene_common_name=LOC124900508;source_gene=hg002_chrY_paternal_339;alternative_source_transcripts=hg002_chrY_paternal_339.1,hg002_chrY_paternal_339.1;gene_id=HG003_chrY_G0000195;gene_biotype=snoRNA;gene_name=LOC124900508;gene_sources=liftoff;ID=HG003_chrY_G0000195;Name=LOC124900508
HG003_chrY	CAT	transcript	16999095	16999226	1000	-	.	source_transcript=hg002_chrY_paternal_339.1;source_transcript_name=hg002_chrY_paternal_339.1;source_gene=hg002_chrY_paternal_339;source_gene_biotype=snoRNA;original_gene_id=hg002_chrY_paternal_339;gene_biotype=snoRNA;transcript_biotype=snoRNA;alignment_id=hg002_chrY_paternal_339.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_339.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124900508;alternative_source_transcripts=hg002_chrY_paternal_339.1,hg002_chrY_paternal_339.1;transcript_id=HG003_chrY_T0000557;gene_id=HG003_chrY_G0000195;Parent=HG003_chrY_G0000195;transcript_name=hg002_chrY_paternal_339.1;gene_name=LOC124900508;ID=HG003_chrY_T0000557;Name=LOC124900508
HG003_chrY	CAT	exon	16999095	16999226	.	-	.	source_transcript=hg002_chrY_paternal_339.1;source_transcript_name=hg002_chrY_paternal_339.1;source_gene=hg002_chrY_paternal_339;source_gene_biotype=snoRNA;original_gene_id=hg002_chrY_paternal_339;gene_biotype=snoRNA;transcript_biotype=snoRNA;alignment_id=hg002_chrY_paternal_339.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_339.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124900508;alternative_source_transcripts=hg002_chrY_paternal_339.1,hg002_chrY_paternal_339.1;transcript_id=HG003_chrY_T0000557;gene_id=HG003_chrY_G0000195;Parent=HG003_chrY_T0000557;transcript_name=hg002_chrY_paternal_339.1;gene_name=LOC124900508;ID=exon:HG003_chrY_T0000557:0;Name=LOC124900508;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18361780	18377556	.	+	.	source_gene_common_name=FAM41AY2;source_gene=hg002_chrY_paternal_344;alternative_source_transcripts=hg002_chrY_paternal_344.1,hg002_chrY_paternal_344.1;gene_id=HG003_chrY_G0000196;gene_biotype=lncRNA;gene_name=FAM41AY2;gene_sources=liftoff;ID=HG003_chrY_G0000196;Name=FAM41AY2
HG003_chrY	CAT	transcript	18361780	18377556	1000	+	.	source_transcript=hg002_chrY_paternal_344.1;source_transcript_name=hg002_chrY_paternal_344.1;source_gene=hg002_chrY_paternal_344;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_344;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_344.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_344.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;alternative_source_transcripts=hg002_chrY_paternal_344.1,hg002_chrY_paternal_344.1;transcript_id=HG003_chrY_T0000558;gene_id=HG003_chrY_G0000196;Parent=HG003_chrY_G0000196;transcript_name=hg002_chrY_paternal_344.1;gene_name=FAM41AY2;ID=HG003_chrY_T0000558;Name=FAM41AY2
HG003_chrY	CAT	exon	18361780	18361937	.	+	.	source_transcript=hg002_chrY_paternal_344.1;source_transcript_name=hg002_chrY_paternal_344.1;source_gene=hg002_chrY_paternal_344;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_344;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_344.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_344.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;alternative_source_transcripts=hg002_chrY_paternal_344.1,hg002_chrY_paternal_344.1;transcript_id=HG003_chrY_T0000558;gene_id=HG003_chrY_G0000196;Parent=HG003_chrY_T0000558;transcript_name=hg002_chrY_paternal_344.1;gene_name=FAM41AY2;ID=exon:HG003_chrY_T0000558:0;Name=FAM41AY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18361938	18362532	.	+	.	source_transcript=hg002_chrY_paternal_344.1;source_transcript_name=hg002_chrY_paternal_344.1;source_gene=hg002_chrY_paternal_344;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_344;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_344.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_344.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;alternative_source_transcripts=hg002_chrY_paternal_344.1,hg002_chrY_paternal_344.1;transcript_id=HG003_chrY_T0000558;gene_id=HG003_chrY_G0000196;Parent=HG003_chrY_T0000558;transcript_name=hg002_chrY_paternal_344.1;gene_name=FAM41AY2;ID=intron:HG003_chrY_T0000558:0;Name=FAM41AY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18362533	18362582	.	+	.	source_transcript=hg002_chrY_paternal_344.1;source_transcript_name=hg002_chrY_paternal_344.1;source_gene=hg002_chrY_paternal_344;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_344;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_344.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_344.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;alternative_source_transcripts=hg002_chrY_paternal_344.1,hg002_chrY_paternal_344.1;transcript_id=HG003_chrY_T0000558;gene_id=HG003_chrY_G0000196;Parent=HG003_chrY_T0000558;transcript_name=hg002_chrY_paternal_344.1;gene_name=FAM41AY2;ID=exon:HG003_chrY_T0000558:1;Name=FAM41AY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18362583	18373911	.	+	.	source_transcript=hg002_chrY_paternal_344.1;source_transcript_name=hg002_chrY_paternal_344.1;source_gene=hg002_chrY_paternal_344;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_344;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_344.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_344.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;alternative_source_transcripts=hg002_chrY_paternal_344.1,hg002_chrY_paternal_344.1;transcript_id=HG003_chrY_T0000558;gene_id=HG003_chrY_G0000196;Parent=HG003_chrY_T0000558;transcript_name=hg002_chrY_paternal_344.1;gene_name=FAM41AY2;ID=intron:HG003_chrY_T0000558:1;Name=FAM41AY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18373912	18374040	.	+	.	source_transcript=hg002_chrY_paternal_344.1;source_transcript_name=hg002_chrY_paternal_344.1;source_gene=hg002_chrY_paternal_344;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_344;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_344.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_344.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;alternative_source_transcripts=hg002_chrY_paternal_344.1,hg002_chrY_paternal_344.1;transcript_id=HG003_chrY_T0000558;gene_id=HG003_chrY_G0000196;Parent=HG003_chrY_T0000558;transcript_name=hg002_chrY_paternal_344.1;gene_name=FAM41AY2;ID=exon:HG003_chrY_T0000558:2;Name=FAM41AY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18374041	18374287	.	+	.	source_transcript=hg002_chrY_paternal_344.1;source_transcript_name=hg002_chrY_paternal_344.1;source_gene=hg002_chrY_paternal_344;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_344;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_344.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_344.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;alternative_source_transcripts=hg002_chrY_paternal_344.1,hg002_chrY_paternal_344.1;transcript_id=HG003_chrY_T0000558;gene_id=HG003_chrY_G0000196;Parent=HG003_chrY_T0000558;transcript_name=hg002_chrY_paternal_344.1;gene_name=FAM41AY2;ID=intron:HG003_chrY_T0000558:2;Name=FAM41AY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18374288	18374381	.	+	.	source_transcript=hg002_chrY_paternal_344.1;source_transcript_name=hg002_chrY_paternal_344.1;source_gene=hg002_chrY_paternal_344;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_344;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_344.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_344.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;alternative_source_transcripts=hg002_chrY_paternal_344.1,hg002_chrY_paternal_344.1;transcript_id=HG003_chrY_T0000558;gene_id=HG003_chrY_G0000196;Parent=HG003_chrY_T0000558;transcript_name=hg002_chrY_paternal_344.1;gene_name=FAM41AY2;ID=exon:HG003_chrY_T0000558:3;Name=FAM41AY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18374382	18374974	.	+	.	source_transcript=hg002_chrY_paternal_344.1;source_transcript_name=hg002_chrY_paternal_344.1;source_gene=hg002_chrY_paternal_344;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_344;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_344.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_344.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;alternative_source_transcripts=hg002_chrY_paternal_344.1,hg002_chrY_paternal_344.1;transcript_id=HG003_chrY_T0000558;gene_id=HG003_chrY_G0000196;Parent=HG003_chrY_T0000558;transcript_name=hg002_chrY_paternal_344.1;gene_name=FAM41AY2;ID=intron:HG003_chrY_T0000558:3;Name=FAM41AY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18374975	18375145	.	+	.	source_transcript=hg002_chrY_paternal_344.1;source_transcript_name=hg002_chrY_paternal_344.1;source_gene=hg002_chrY_paternal_344;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_344;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_344.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_344.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;alternative_source_transcripts=hg002_chrY_paternal_344.1,hg002_chrY_paternal_344.1;transcript_id=HG003_chrY_T0000558;gene_id=HG003_chrY_G0000196;Parent=HG003_chrY_T0000558;transcript_name=hg002_chrY_paternal_344.1;gene_name=FAM41AY2;ID=exon:HG003_chrY_T0000558:4;Name=FAM41AY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18375146	18375254	.	+	.	source_transcript=hg002_chrY_paternal_344.1;source_transcript_name=hg002_chrY_paternal_344.1;source_gene=hg002_chrY_paternal_344;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_344;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_344.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_344.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;alternative_source_transcripts=hg002_chrY_paternal_344.1,hg002_chrY_paternal_344.1;transcript_id=HG003_chrY_T0000558;gene_id=HG003_chrY_G0000196;Parent=HG003_chrY_T0000558;transcript_name=hg002_chrY_paternal_344.1;gene_name=FAM41AY2;ID=intron:HG003_chrY_T0000558:4;Name=FAM41AY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18375255	18375348	.	+	.	source_transcript=hg002_chrY_paternal_344.1;source_transcript_name=hg002_chrY_paternal_344.1;source_gene=hg002_chrY_paternal_344;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_344;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_344.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_344.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;alternative_source_transcripts=hg002_chrY_paternal_344.1,hg002_chrY_paternal_344.1;transcript_id=HG003_chrY_T0000558;gene_id=HG003_chrY_G0000196;Parent=HG003_chrY_T0000558;transcript_name=hg002_chrY_paternal_344.1;gene_name=FAM41AY2;ID=exon:HG003_chrY_T0000558:5;Name=FAM41AY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18375349	18375622	.	+	.	source_transcript=hg002_chrY_paternal_344.1;source_transcript_name=hg002_chrY_paternal_344.1;source_gene=hg002_chrY_paternal_344;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_344;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_344.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_344.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;alternative_source_transcripts=hg002_chrY_paternal_344.1,hg002_chrY_paternal_344.1;transcript_id=HG003_chrY_T0000558;gene_id=HG003_chrY_G0000196;Parent=HG003_chrY_T0000558;transcript_name=hg002_chrY_paternal_344.1;gene_name=FAM41AY2;ID=intron:HG003_chrY_T0000558:5;Name=FAM41AY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18375623	18375832	.	+	.	source_transcript=hg002_chrY_paternal_344.1;source_transcript_name=hg002_chrY_paternal_344.1;source_gene=hg002_chrY_paternal_344;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_344;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_344.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_344.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;alternative_source_transcripts=hg002_chrY_paternal_344.1,hg002_chrY_paternal_344.1;transcript_id=HG003_chrY_T0000558;gene_id=HG003_chrY_G0000196;Parent=HG003_chrY_T0000558;transcript_name=hg002_chrY_paternal_344.1;gene_name=FAM41AY2;ID=exon:HG003_chrY_T0000558:6;Name=FAM41AY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18375833	18376125	.	+	.	source_transcript=hg002_chrY_paternal_344.1;source_transcript_name=hg002_chrY_paternal_344.1;source_gene=hg002_chrY_paternal_344;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_344;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_344.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_344.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;alternative_source_transcripts=hg002_chrY_paternal_344.1,hg002_chrY_paternal_344.1;transcript_id=HG003_chrY_T0000558;gene_id=HG003_chrY_G0000196;Parent=HG003_chrY_T0000558;transcript_name=hg002_chrY_paternal_344.1;gene_name=FAM41AY2;ID=intron:HG003_chrY_T0000558:6;Name=FAM41AY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18376126	18376313	.	+	.	source_transcript=hg002_chrY_paternal_344.1;source_transcript_name=hg002_chrY_paternal_344.1;source_gene=hg002_chrY_paternal_344;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_344;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_344.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_344.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;alternative_source_transcripts=hg002_chrY_paternal_344.1,hg002_chrY_paternal_344.1;transcript_id=HG003_chrY_T0000558;gene_id=HG003_chrY_G0000196;Parent=HG003_chrY_T0000558;transcript_name=hg002_chrY_paternal_344.1;gene_name=FAM41AY2;ID=exon:HG003_chrY_T0000558:7;Name=FAM41AY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18376314	18376525	.	+	.	source_transcript=hg002_chrY_paternal_344.1;source_transcript_name=hg002_chrY_paternal_344.1;source_gene=hg002_chrY_paternal_344;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_344;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_344.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_344.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;alternative_source_transcripts=hg002_chrY_paternal_344.1,hg002_chrY_paternal_344.1;transcript_id=HG003_chrY_T0000558;gene_id=HG003_chrY_G0000196;Parent=HG003_chrY_T0000558;transcript_name=hg002_chrY_paternal_344.1;gene_name=FAM41AY2;ID=intron:HG003_chrY_T0000558:7;Name=FAM41AY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18376526	18376747	.	+	.	source_transcript=hg002_chrY_paternal_344.1;source_transcript_name=hg002_chrY_paternal_344.1;source_gene=hg002_chrY_paternal_344;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_344;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_344.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_344.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;alternative_source_transcripts=hg002_chrY_paternal_344.1,hg002_chrY_paternal_344.1;transcript_id=HG003_chrY_T0000558;gene_id=HG003_chrY_G0000196;Parent=HG003_chrY_T0000558;transcript_name=hg002_chrY_paternal_344.1;gene_name=FAM41AY2;ID=exon:HG003_chrY_T0000558:8;Name=FAM41AY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18376748	18376829	.	+	.	source_transcript=hg002_chrY_paternal_344.1;source_transcript_name=hg002_chrY_paternal_344.1;source_gene=hg002_chrY_paternal_344;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_344;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_344.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_344.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;alternative_source_transcripts=hg002_chrY_paternal_344.1,hg002_chrY_paternal_344.1;transcript_id=HG003_chrY_T0000558;gene_id=HG003_chrY_G0000196;Parent=HG003_chrY_T0000558;transcript_name=hg002_chrY_paternal_344.1;gene_name=FAM41AY2;ID=intron:HG003_chrY_T0000558:8;Name=FAM41AY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18376830	18377556	.	+	.	source_transcript=hg002_chrY_paternal_344.1;source_transcript_name=hg002_chrY_paternal_344.1;source_gene=hg002_chrY_paternal_344;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_344;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_344.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_344.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;alternative_source_transcripts=hg002_chrY_paternal_344.1,hg002_chrY_paternal_344.1;transcript_id=HG003_chrY_T0000558;gene_id=HG003_chrY_G0000196;Parent=HG003_chrY_T0000558;transcript_name=hg002_chrY_paternal_344.1;gene_name=FAM41AY2;ID=exon:HG003_chrY_T0000558:9;Name=FAM41AY2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18414961	18424220	.	-	.	source_gene_common_name=LOC105377217;source_gene=hg002_chrY_paternal_346;alternative_source_transcripts=hg002_chrY_paternal_346.1,hg002_chrY_paternal_346.1;gene_id=HG003_chrY_G0000197;gene_biotype=lncRNA;gene_name=LOC105377217;gene_sources=liftoff;ID=HG003_chrY_G0000197;Name=LOC105377217
HG003_chrY	CAT	transcript	18414961	18424220	1000	-	.	source_transcript=hg002_chrY_paternal_346.1;source_transcript_name=hg002_chrY_paternal_346.1;source_gene=hg002_chrY_paternal_346;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_346;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_346.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_346.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377217;alternative_source_transcripts=hg002_chrY_paternal_346.1,hg002_chrY_paternal_346.1;transcript_id=HG003_chrY_T0000559;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_G0000197;transcript_name=hg002_chrY_paternal_346.1;gene_name=LOC105377217;ID=HG003_chrY_T0000559;Name=LOC105377217
HG003_chrY	CAT	exon	18414961	18416827	.	-	.	source_transcript=hg002_chrY_paternal_346.1;source_transcript_name=hg002_chrY_paternal_346.1;source_gene=hg002_chrY_paternal_346;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_346;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_346.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_346.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377217;alternative_source_transcripts=hg002_chrY_paternal_346.1,hg002_chrY_paternal_346.1;transcript_id=HG003_chrY_T0000559;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000559;transcript_name=hg002_chrY_paternal_346.1;gene_name=LOC105377217;ID=exon:HG003_chrY_T0000559:0;Name=LOC105377217;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18416828	18417537	.	-	.	source_transcript=hg002_chrY_paternal_346.1;source_transcript_name=hg002_chrY_paternal_346.1;source_gene=hg002_chrY_paternal_346;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_346;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_346.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_346.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377217;alternative_source_transcripts=hg002_chrY_paternal_346.1,hg002_chrY_paternal_346.1;transcript_id=HG003_chrY_T0000559;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000559;transcript_name=hg002_chrY_paternal_346.1;gene_name=LOC105377217;ID=intron:HG003_chrY_T0000559:0;Name=LOC105377217;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18417538	18417666	.	-	.	source_transcript=hg002_chrY_paternal_346.1;source_transcript_name=hg002_chrY_paternal_346.1;source_gene=hg002_chrY_paternal_346;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_346;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_346.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_346.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377217;alternative_source_transcripts=hg002_chrY_paternal_346.1,hg002_chrY_paternal_346.1;transcript_id=HG003_chrY_T0000559;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000559;transcript_name=hg002_chrY_paternal_346.1;gene_name=LOC105377217;ID=exon:HG003_chrY_T0000559:1;Name=LOC105377217;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18417667	18418878	.	-	.	source_transcript=hg002_chrY_paternal_346.1;source_transcript_name=hg002_chrY_paternal_346.1;source_gene=hg002_chrY_paternal_346;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_346;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_346.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_346.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377217;alternative_source_transcripts=hg002_chrY_paternal_346.1,hg002_chrY_paternal_346.1;transcript_id=HG003_chrY_T0000559;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000559;transcript_name=hg002_chrY_paternal_346.1;gene_name=LOC105377217;ID=intron:HG003_chrY_T0000559:1;Name=LOC105377217;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18418879	18424220	.	-	.	source_transcript=hg002_chrY_paternal_346.1;source_transcript_name=hg002_chrY_paternal_346.1;source_gene=hg002_chrY_paternal_346;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_346;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_346.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_346.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377217;alternative_source_transcripts=hg002_chrY_paternal_346.1,hg002_chrY_paternal_346.1;transcript_id=HG003_chrY_T0000559;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000559;transcript_name=hg002_chrY_paternal_346.1;gene_name=LOC105377217;ID=exon:HG003_chrY_T0000559:2;Name=LOC105377217;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18436004	18440293	.	-	.	source_gene_common_name=FAM224A;source_gene=hg002_chrY_paternal_349;alternative_source_transcripts=hg002_chrY_paternal_349.1,hg002_chrY_paternal_349.1;gene_id=HG003_chrY_G0000198;gene_biotype=lncRNA;gene_name=FAM224A;gene_sources=liftoff;ID=HG003_chrY_G0000198;Name=FAM224A
HG003_chrY	CAT	transcript	18436004	18440293	1000	-	.	source_transcript=hg002_chrY_paternal_349.1;source_transcript_name=hg002_chrY_paternal_349.1;source_gene=hg002_chrY_paternal_349;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_349;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_349.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_349.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=hg002_chrY_paternal_349.1,hg002_chrY_paternal_349.1;transcript_id=HG003_chrY_T0000560;gene_id=HG003_chrY_G0000198;Parent=HG003_chrY_G0000198;transcript_name=hg002_chrY_paternal_349.1;gene_name=FAM224A;ID=HG003_chrY_T0000560;Name=FAM224A
HG003_chrY	CAT	exon	18436004	18436187	.	-	.	source_transcript=hg002_chrY_paternal_349.1;source_transcript_name=hg002_chrY_paternal_349.1;source_gene=hg002_chrY_paternal_349;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_349;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_349.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_349.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=hg002_chrY_paternal_349.1,hg002_chrY_paternal_349.1;transcript_id=HG003_chrY_T0000560;gene_id=HG003_chrY_G0000198;Parent=HG003_chrY_T0000560;transcript_name=hg002_chrY_paternal_349.1;gene_name=FAM224A;ID=exon:HG003_chrY_T0000560:0;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18436188	18437522	.	-	.	source_transcript=hg002_chrY_paternal_349.1;source_transcript_name=hg002_chrY_paternal_349.1;source_gene=hg002_chrY_paternal_349;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_349;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_349.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_349.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=hg002_chrY_paternal_349.1,hg002_chrY_paternal_349.1;transcript_id=HG003_chrY_T0000560;gene_id=HG003_chrY_G0000198;Parent=HG003_chrY_T0000560;transcript_name=hg002_chrY_paternal_349.1;gene_name=FAM224A;ID=intron:HG003_chrY_T0000560:0;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18437523	18437640	.	-	.	source_transcript=hg002_chrY_paternal_349.1;source_transcript_name=hg002_chrY_paternal_349.1;source_gene=hg002_chrY_paternal_349;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_349;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_349.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_349.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=hg002_chrY_paternal_349.1,hg002_chrY_paternal_349.1;transcript_id=HG003_chrY_T0000560;gene_id=HG003_chrY_G0000198;Parent=HG003_chrY_T0000560;transcript_name=hg002_chrY_paternal_349.1;gene_name=FAM224A;ID=exon:HG003_chrY_T0000560:1;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18437641	18440135	.	-	.	source_transcript=hg002_chrY_paternal_349.1;source_transcript_name=hg002_chrY_paternal_349.1;source_gene=hg002_chrY_paternal_349;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_349;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_349.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_349.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=hg002_chrY_paternal_349.1,hg002_chrY_paternal_349.1;transcript_id=HG003_chrY_T0000560;gene_id=HG003_chrY_G0000198;Parent=HG003_chrY_T0000560;transcript_name=hg002_chrY_paternal_349.1;gene_name=FAM224A;ID=intron:HG003_chrY_T0000560:1;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18440136	18440293	.	-	.	source_transcript=hg002_chrY_paternal_349.1;source_transcript_name=hg002_chrY_paternal_349.1;source_gene=hg002_chrY_paternal_349;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_349;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_349.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_349.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=hg002_chrY_paternal_349.1,hg002_chrY_paternal_349.1;transcript_id=HG003_chrY_T0000560;gene_id=HG003_chrY_G0000198;Parent=HG003_chrY_T0000560;transcript_name=hg002_chrY_paternal_349.1;gene_name=FAM224A;ID=exon:HG003_chrY_T0000560:2;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18549326	18550126	.	-	.	source_gene_common_name=LOC105377219;source_gene=hg002_chrY_paternal_352;alternative_source_transcripts=hg002_chrY_paternal_352.1,hg002_chrY_paternal_352.1;gene_id=HG003_chrY_G0000199;gene_biotype=lncRNA;gene_name=LOC105377219;gene_sources=liftoff;ID=HG003_chrY_G0000199;Name=LOC105377219
HG003_chrY	CAT	transcript	18549326	18550126	1000	-	.	source_transcript=hg002_chrY_paternal_352.1;source_transcript_name=hg002_chrY_paternal_352.1;source_gene=hg002_chrY_paternal_352;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_352;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_352.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_352.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377219;alternative_source_transcripts=hg002_chrY_paternal_352.1,hg002_chrY_paternal_352.1;transcript_id=HG003_chrY_T0000561;gene_id=HG003_chrY_G0000199;Parent=HG003_chrY_G0000199;transcript_name=hg002_chrY_paternal_352.1;gene_name=LOC105377219;ID=HG003_chrY_T0000561;Name=LOC105377219
HG003_chrY	CAT	exon	18549326	18549782	.	-	.	source_transcript=hg002_chrY_paternal_352.1;source_transcript_name=hg002_chrY_paternal_352.1;source_gene=hg002_chrY_paternal_352;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_352;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_352.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_352.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377219;alternative_source_transcripts=hg002_chrY_paternal_352.1,hg002_chrY_paternal_352.1;transcript_id=HG003_chrY_T0000561;gene_id=HG003_chrY_G0000199;Parent=HG003_chrY_T0000561;transcript_name=hg002_chrY_paternal_352.1;gene_name=LOC105377219;ID=exon:HG003_chrY_T0000561:0;Name=LOC105377219;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18549783	18549870	.	-	.	source_transcript=hg002_chrY_paternal_352.1;source_transcript_name=hg002_chrY_paternal_352.1;source_gene=hg002_chrY_paternal_352;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_352;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_352.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_352.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377219;alternative_source_transcripts=hg002_chrY_paternal_352.1,hg002_chrY_paternal_352.1;transcript_id=HG003_chrY_T0000561;gene_id=HG003_chrY_G0000199;Parent=HG003_chrY_T0000561;transcript_name=hg002_chrY_paternal_352.1;gene_name=LOC105377219;ID=intron:HG003_chrY_T0000561:0;Name=LOC105377219;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18549871	18549956	.	-	.	source_transcript=hg002_chrY_paternal_352.1;source_transcript_name=hg002_chrY_paternal_352.1;source_gene=hg002_chrY_paternal_352;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_352;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_352.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_352.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377219;alternative_source_transcripts=hg002_chrY_paternal_352.1,hg002_chrY_paternal_352.1;transcript_id=HG003_chrY_T0000561;gene_id=HG003_chrY_G0000199;Parent=HG003_chrY_T0000561;transcript_name=hg002_chrY_paternal_352.1;gene_name=LOC105377219;ID=exon:HG003_chrY_T0000561:1;Name=LOC105377219;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18549957	18550043	.	-	.	source_transcript=hg002_chrY_paternal_352.1;source_transcript_name=hg002_chrY_paternal_352.1;source_gene=hg002_chrY_paternal_352;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_352;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_352.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_352.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377219;alternative_source_transcripts=hg002_chrY_paternal_352.1,hg002_chrY_paternal_352.1;transcript_id=HG003_chrY_T0000561;gene_id=HG003_chrY_G0000199;Parent=HG003_chrY_T0000561;transcript_name=hg002_chrY_paternal_352.1;gene_name=LOC105377219;ID=intron:HG003_chrY_T0000561:1;Name=LOC105377219;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18550044	18550126	.	-	.	source_transcript=hg002_chrY_paternal_352.1;source_transcript_name=hg002_chrY_paternal_352.1;source_gene=hg002_chrY_paternal_352;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_352;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_352.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_352.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377219;alternative_source_transcripts=hg002_chrY_paternal_352.1,hg002_chrY_paternal_352.1;transcript_id=HG003_chrY_T0000561;gene_id=HG003_chrY_G0000199;Parent=HG003_chrY_T0000561;transcript_name=hg002_chrY_paternal_352.1;gene_name=LOC105377219;ID=exon:HG003_chrY_T0000561:2;Name=LOC105377219;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18553744	18560604	.	-	.	source_gene_common_name=LOC124905303;source_gene=hg002_chrY_paternal_353;alternative_source_transcripts=hg002_chrY_paternal_353.1,hg002_chrY_paternal_353.1;gene_id=HG003_chrY_G0000200;gene_biotype=lncRNA;gene_name=LOC124905303;gene_sources=liftoff;ID=HG003_chrY_G0000200;Name=LOC124905303
HG003_chrY	CAT	transcript	18553744	18560604	1000	-	.	source_transcript=hg002_chrY_paternal_353.1;source_transcript_name=hg002_chrY_paternal_353.1;source_gene=hg002_chrY_paternal_353;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_353;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_353.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_353.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905303;alternative_source_transcripts=hg002_chrY_paternal_353.1,hg002_chrY_paternal_353.1;transcript_id=HG003_chrY_T0000562;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_G0000200;transcript_name=hg002_chrY_paternal_353.1;gene_name=LOC124905303;ID=HG003_chrY_T0000562;Name=LOC124905303
HG003_chrY	CAT	exon	18553744	18557688	.	-	.	source_transcript=hg002_chrY_paternal_353.1;source_transcript_name=hg002_chrY_paternal_353.1;source_gene=hg002_chrY_paternal_353;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_353;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_353.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_353.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905303;alternative_source_transcripts=hg002_chrY_paternal_353.1,hg002_chrY_paternal_353.1;transcript_id=HG003_chrY_T0000562;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000562;transcript_name=hg002_chrY_paternal_353.1;gene_name=LOC124905303;ID=exon:HG003_chrY_T0000562:0;Name=LOC124905303;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18557689	18557776	.	-	.	source_transcript=hg002_chrY_paternal_353.1;source_transcript_name=hg002_chrY_paternal_353.1;source_gene=hg002_chrY_paternal_353;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_353;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_353.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_353.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905303;alternative_source_transcripts=hg002_chrY_paternal_353.1,hg002_chrY_paternal_353.1;transcript_id=HG003_chrY_T0000562;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000562;transcript_name=hg002_chrY_paternal_353.1;gene_name=LOC124905303;ID=intron:HG003_chrY_T0000562:0;Name=LOC124905303;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18557777	18558525	.	-	.	source_transcript=hg002_chrY_paternal_353.1;source_transcript_name=hg002_chrY_paternal_353.1;source_gene=hg002_chrY_paternal_353;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_353;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_353.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_353.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905303;alternative_source_transcripts=hg002_chrY_paternal_353.1,hg002_chrY_paternal_353.1;transcript_id=HG003_chrY_T0000562;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000562;transcript_name=hg002_chrY_paternal_353.1;gene_name=LOC124905303;ID=exon:HG003_chrY_T0000562:1;Name=LOC124905303;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18558526	18558612	.	-	.	source_transcript=hg002_chrY_paternal_353.1;source_transcript_name=hg002_chrY_paternal_353.1;source_gene=hg002_chrY_paternal_353;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_353;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_353.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_353.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905303;alternative_source_transcripts=hg002_chrY_paternal_353.1,hg002_chrY_paternal_353.1;transcript_id=HG003_chrY_T0000562;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000562;transcript_name=hg002_chrY_paternal_353.1;gene_name=LOC124905303;ID=intron:HG003_chrY_T0000562:1;Name=LOC124905303;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18558613	18560604	.	-	.	source_transcript=hg002_chrY_paternal_353.1;source_transcript_name=hg002_chrY_paternal_353.1;source_gene=hg002_chrY_paternal_353;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_353;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_353.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_353.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905303;alternative_source_transcripts=hg002_chrY_paternal_353.1,hg002_chrY_paternal_353.1;transcript_id=HG003_chrY_T0000562;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000562;transcript_name=hg002_chrY_paternal_353.1;gene_name=LOC124905303;ID=exon:HG003_chrY_T0000562:2;Name=LOC124905303;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18629795	18631375	.	-	.	source_gene_common_name=XKRY;source_gene=hg002_chrY_paternal_358;alternative_source_transcripts=hg002_chrY_paternal_358.1,hg002_chrY_paternal_358.1;gene_id=HG003_chrY_G0000201;gene_biotype=transcribed_pseudogene;gene_name=XKRY;gene_sources=liftoff;ID=HG003_chrY_G0000201;Name=XKRY
HG003_chrY	CAT	transcript	18629795	18631375	1000	-	.	source_transcript=hg002_chrY_paternal_358.1;source_transcript_name=hg002_chrY_paternal_358.1;source_gene=hg002_chrY_paternal_358;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_358;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_358.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_358.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XKRY;alternative_source_transcripts=hg002_chrY_paternal_358.1,hg002_chrY_paternal_358.1;transcript_id=HG003_chrY_T0000563;gene_id=HG003_chrY_G0000201;Parent=HG003_chrY_G0000201;transcript_name=hg002_chrY_paternal_358.1;gene_name=XKRY;ID=HG003_chrY_T0000563;Name=XKRY
HG003_chrY	CAT	exon	18629795	18631375	.	-	.	source_transcript=hg002_chrY_paternal_358.1;source_transcript_name=hg002_chrY_paternal_358.1;source_gene=hg002_chrY_paternal_358;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_358;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_358.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_358.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XKRY;alternative_source_transcripts=hg002_chrY_paternal_358.1,hg002_chrY_paternal_358.1;transcript_id=HG003_chrY_T0000563;gene_id=HG003_chrY_G0000201;Parent=HG003_chrY_T0000563;transcript_name=hg002_chrY_paternal_358.1;gene_name=XKRY;ID=exon:HG003_chrY_T0000563:0;Name=XKRY;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18739086	18741045	.	-	.	source_gene_common_name=CDY2A;source_gene=hg002_chrY_paternal_365;alternative_source_transcripts=hg002_chrY_paternal_365.1,hg002_chrY_paternal_365.1;gene_id=HG003_chrY_G0000202;gene_biotype=protein_coding;gene_name=CDY2A;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000202;Name=CDY2A
HG003_chrY	CAT	transcript	18739086	18741045	100	-	.	source_transcript=hg002_chrY_paternal_365.1;source_transcript_name=hg002_chrY_paternal_365.1;source_gene=hg002_chrY_paternal_365;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_365;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_365.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_365.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY2A;alternative_source_transcripts=hg002_chrY_paternal_365.1,hg002_chrY_paternal_365.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000564;gene_id=HG003_chrY_G0000202;Parent=HG003_chrY_G0000202;transcript_name=hg002_chrY_paternal_365.1;gene_name=CDY2A;ID=HG003_chrY_T0000564;Name=CDY2A
HG003_chrY	CAT	exon	18739086	18741045	.	-	.	source_transcript=hg002_chrY_paternal_365.1;source_transcript_name=hg002_chrY_paternal_365.1;source_gene=hg002_chrY_paternal_365;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_365;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_365.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_365.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY2A;alternative_source_transcripts=hg002_chrY_paternal_365.1,hg002_chrY_paternal_365.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000564;gene_id=HG003_chrY_G0000202;Parent=HG003_chrY_T0000564;transcript_name=hg002_chrY_paternal_365.1;gene_name=CDY2A;ID=exon:HG003_chrY_T0000564:0;Name=CDY2A;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	18739092	18740717	.	-	0	source_transcript=hg002_chrY_paternal_365.1;source_transcript_name=hg002_chrY_paternal_365.1;source_gene=hg002_chrY_paternal_365;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_365;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_365.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_365.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY2A;alternative_source_transcripts=hg002_chrY_paternal_365.1,hg002_chrY_paternal_365.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000564;gene_id=HG003_chrY_G0000202;Parent=HG003_chrY_T0000564;transcript_name=hg002_chrY_paternal_365.1;gene_name=CDY2A;ID=CDS:HG003_chrY_T0000564:0;Name=CDY2A;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	18739092	18739094	.	-	0	source_transcript=hg002_chrY_paternal_365.1;source_transcript_name=hg002_chrY_paternal_365.1;source_gene=hg002_chrY_paternal_365;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_365;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_365.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_365.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY2A;alternative_source_transcripts=hg002_chrY_paternal_365.1,hg002_chrY_paternal_365.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000564;gene_id=HG003_chrY_G0000202;Parent=HG003_chrY_T0000564;transcript_name=hg002_chrY_paternal_365.1;gene_name=CDY2A;ID=stop_codon:HG003_chrY_T0000564;Name=CDY2A;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	18740715	18740717	.	-	0	source_transcript=hg002_chrY_paternal_365.1;source_transcript_name=hg002_chrY_paternal_365.1;source_gene=hg002_chrY_paternal_365;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_365;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_365.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_365.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY2A;alternative_source_transcripts=hg002_chrY_paternal_365.1,hg002_chrY_paternal_365.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000564;gene_id=HG003_chrY_G0000202;Parent=HG003_chrY_T0000564;transcript_name=hg002_chrY_paternal_365.1;gene_name=CDY2A;ID=start_codon:HG003_chrY_T0000564;Name=CDY2A;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18886523	18888483	.	+	.	source_gene_common_name=CDY2B;source_gene=hg002_chrY_paternal_373;alternative_source_transcripts=hg002_chrY_paternal_373.1,hg002_chrY_paternal_373.1;gene_id=HG003_chrY_G0000203;gene_biotype=protein_coding;gene_name=CDY2B;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000203;Name=CDY2B
HG003_chrY	CAT	transcript	18886523	18888483	100	+	.	source_transcript=hg002_chrY_paternal_373.1;source_transcript_name=hg002_chrY_paternal_373.1;source_gene=hg002_chrY_paternal_373;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_373;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_373.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_373.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY2B;alternative_source_transcripts=hg002_chrY_paternal_373.1,hg002_chrY_paternal_373.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000565;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_G0000203;transcript_name=hg002_chrY_paternal_373.1;gene_name=CDY2B;ID=HG003_chrY_T0000565;Name=CDY2B
HG003_chrY	CAT	exon	18886523	18888483	.	+	.	source_transcript=hg002_chrY_paternal_373.1;source_transcript_name=hg002_chrY_paternal_373.1;source_gene=hg002_chrY_paternal_373;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_373;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_373.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_373.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY2B;alternative_source_transcripts=hg002_chrY_paternal_373.1,hg002_chrY_paternal_373.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000565;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000565;transcript_name=hg002_chrY_paternal_373.1;gene_name=CDY2B;ID=exon:HG003_chrY_T0000565:0;Name=CDY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	18886851	18888476	.	+	0	source_transcript=hg002_chrY_paternal_373.1;source_transcript_name=hg002_chrY_paternal_373.1;source_gene=hg002_chrY_paternal_373;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_373;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_373.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_373.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY2B;alternative_source_transcripts=hg002_chrY_paternal_373.1,hg002_chrY_paternal_373.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000565;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000565;transcript_name=hg002_chrY_paternal_373.1;gene_name=CDY2B;ID=CDS:HG003_chrY_T0000565:0;Name=CDY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	18886851	18886853	.	+	0	source_transcript=hg002_chrY_paternal_373.1;source_transcript_name=hg002_chrY_paternal_373.1;source_gene=hg002_chrY_paternal_373;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_373;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_373.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_373.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY2B;alternative_source_transcripts=hg002_chrY_paternal_373.1,hg002_chrY_paternal_373.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000565;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000565;transcript_name=hg002_chrY_paternal_373.1;gene_name=CDY2B;ID=start_codon:HG003_chrY_T0000565;Name=CDY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	18888474	18888476	.	+	0	source_transcript=hg002_chrY_paternal_373.1;source_transcript_name=hg002_chrY_paternal_373.1;source_gene=hg002_chrY_paternal_373;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_373;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_373.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_373.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY2B;alternative_source_transcripts=hg002_chrY_paternal_373.1,hg002_chrY_paternal_373.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000565;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000565;transcript_name=hg002_chrY_paternal_373.1;gene_name=CDY2B;ID=stop_codon:HG003_chrY_T0000565;Name=CDY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18996175	18997755	.	+	.	source_gene_common_name=XKRY2;source_gene=hg002_chrY_paternal_380;alternative_source_transcripts=hg002_chrY_paternal_380.1,hg002_chrY_paternal_380.1;gene_id=HG003_chrY_G0000204;gene_biotype=transcribed_pseudogene;gene_name=XKRY2;gene_sources=liftoff;ID=HG003_chrY_G0000204;Name=XKRY2
HG003_chrY	CAT	transcript	18996175	18997755	1000	+	.	source_transcript=hg002_chrY_paternal_380.1;source_transcript_name=hg002_chrY_paternal_380.1;source_gene=hg002_chrY_paternal_380;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_380;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_380.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_380.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XKRY2;alternative_source_transcripts=hg002_chrY_paternal_380.1,hg002_chrY_paternal_380.1;transcript_id=HG003_chrY_T0000566;gene_id=HG003_chrY_G0000204;Parent=HG003_chrY_G0000204;transcript_name=hg002_chrY_paternal_380.1;gene_name=XKRY2;ID=HG003_chrY_T0000566;Name=XKRY2
HG003_chrY	CAT	exon	18996175	18997755	.	+	.	source_transcript=hg002_chrY_paternal_380.1;source_transcript_name=hg002_chrY_paternal_380.1;source_gene=hg002_chrY_paternal_380;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_380;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_380.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_380.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XKRY2;alternative_source_transcripts=hg002_chrY_paternal_380.1,hg002_chrY_paternal_380.1;transcript_id=HG003_chrY_T0000566;gene_id=HG003_chrY_G0000204;Parent=HG003_chrY_T0000566;transcript_name=hg002_chrY_paternal_380.1;gene_name=XKRY2;ID=exon:HG003_chrY_T0000566:0;Name=XKRY2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19066949	19073809	.	+	.	source_gene_common_name=LOC124905302;source_gene=hg002_chrY_paternal_385;alternative_source_transcripts=hg002_chrY_paternal_385.1,hg002_chrY_paternal_385.1;gene_id=HG003_chrY_G0000205;gene_biotype=lncRNA;gene_name=LOC124905302;gene_sources=liftoff;ID=HG003_chrY_G0000205;Name=LOC124905302
HG003_chrY	CAT	transcript	19066949	19073809	1000	+	.	source_transcript=hg002_chrY_paternal_385.1;source_transcript_name=hg002_chrY_paternal_385.1;source_gene=hg002_chrY_paternal_385;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_385;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_385.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_385.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905302;alternative_source_transcripts=hg002_chrY_paternal_385.1,hg002_chrY_paternal_385.1;transcript_id=HG003_chrY_T0000567;gene_id=HG003_chrY_G0000205;Parent=HG003_chrY_G0000205;transcript_name=hg002_chrY_paternal_385.1;gene_name=LOC124905302;ID=HG003_chrY_T0000567;Name=LOC124905302
HG003_chrY	CAT	exon	19066949	19068940	.	+	.	source_transcript=hg002_chrY_paternal_385.1;source_transcript_name=hg002_chrY_paternal_385.1;source_gene=hg002_chrY_paternal_385;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_385;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_385.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_385.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905302;alternative_source_transcripts=hg002_chrY_paternal_385.1,hg002_chrY_paternal_385.1;transcript_id=HG003_chrY_T0000567;gene_id=HG003_chrY_G0000205;Parent=HG003_chrY_T0000567;transcript_name=hg002_chrY_paternal_385.1;gene_name=LOC124905302;ID=exon:HG003_chrY_T0000567:0;Name=LOC124905302;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19068941	19069027	.	+	.	source_transcript=hg002_chrY_paternal_385.1;source_transcript_name=hg002_chrY_paternal_385.1;source_gene=hg002_chrY_paternal_385;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_385;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_385.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_385.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905302;alternative_source_transcripts=hg002_chrY_paternal_385.1,hg002_chrY_paternal_385.1;transcript_id=HG003_chrY_T0000567;gene_id=HG003_chrY_G0000205;Parent=HG003_chrY_T0000567;transcript_name=hg002_chrY_paternal_385.1;gene_name=LOC124905302;ID=intron:HG003_chrY_T0000567:0;Name=LOC124905302;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19069028	19069776	.	+	.	source_transcript=hg002_chrY_paternal_385.1;source_transcript_name=hg002_chrY_paternal_385.1;source_gene=hg002_chrY_paternal_385;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_385;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_385.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_385.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905302;alternative_source_transcripts=hg002_chrY_paternal_385.1,hg002_chrY_paternal_385.1;transcript_id=HG003_chrY_T0000567;gene_id=HG003_chrY_G0000205;Parent=HG003_chrY_T0000567;transcript_name=hg002_chrY_paternal_385.1;gene_name=LOC124905302;ID=exon:HG003_chrY_T0000567:1;Name=LOC124905302;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19069777	19069864	.	+	.	source_transcript=hg002_chrY_paternal_385.1;source_transcript_name=hg002_chrY_paternal_385.1;source_gene=hg002_chrY_paternal_385;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_385;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_385.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_385.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905302;alternative_source_transcripts=hg002_chrY_paternal_385.1,hg002_chrY_paternal_385.1;transcript_id=HG003_chrY_T0000567;gene_id=HG003_chrY_G0000205;Parent=HG003_chrY_T0000567;transcript_name=hg002_chrY_paternal_385.1;gene_name=LOC124905302;ID=intron:HG003_chrY_T0000567:1;Name=LOC124905302;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19069865	19073809	.	+	.	source_transcript=hg002_chrY_paternal_385.1;source_transcript_name=hg002_chrY_paternal_385.1;source_gene=hg002_chrY_paternal_385;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_385;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_385.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_385.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905302;alternative_source_transcripts=hg002_chrY_paternal_385.1,hg002_chrY_paternal_385.1;transcript_id=HG003_chrY_T0000567;gene_id=HG003_chrY_G0000205;Parent=HG003_chrY_T0000567;transcript_name=hg002_chrY_paternal_385.1;gene_name=LOC124905302;ID=exon:HG003_chrY_T0000567:2;Name=LOC124905302;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19077427	19078227	.	+	.	source_gene_common_name=LOC105377218;source_gene=hg002_chrY_paternal_386;alternative_source_transcripts=hg002_chrY_paternal_386.1,hg002_chrY_paternal_386.1;gene_id=HG003_chrY_G0000206;gene_biotype=lncRNA;gene_name=LOC105377218;gene_sources=liftoff;ID=HG003_chrY_G0000206;Name=LOC105377218
HG003_chrY	CAT	transcript	19077427	19078227	1000	+	.	source_transcript=hg002_chrY_paternal_386.1;source_transcript_name=hg002_chrY_paternal_386.1;source_gene=hg002_chrY_paternal_386;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_386;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_386.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_386.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377218;alternative_source_transcripts=hg002_chrY_paternal_386.1,hg002_chrY_paternal_386.1;transcript_id=HG003_chrY_T0000568;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_G0000206;transcript_name=hg002_chrY_paternal_386.1;gene_name=LOC105377218;ID=HG003_chrY_T0000568;Name=LOC105377218
HG003_chrY	CAT	exon	19077427	19077509	.	+	.	source_transcript=hg002_chrY_paternal_386.1;source_transcript_name=hg002_chrY_paternal_386.1;source_gene=hg002_chrY_paternal_386;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_386;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_386.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_386.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377218;alternative_source_transcripts=hg002_chrY_paternal_386.1,hg002_chrY_paternal_386.1;transcript_id=HG003_chrY_T0000568;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000568;transcript_name=hg002_chrY_paternal_386.1;gene_name=LOC105377218;ID=exon:HG003_chrY_T0000568:0;Name=LOC105377218;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19077510	19077596	.	+	.	source_transcript=hg002_chrY_paternal_386.1;source_transcript_name=hg002_chrY_paternal_386.1;source_gene=hg002_chrY_paternal_386;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_386;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_386.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_386.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377218;alternative_source_transcripts=hg002_chrY_paternal_386.1,hg002_chrY_paternal_386.1;transcript_id=HG003_chrY_T0000568;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000568;transcript_name=hg002_chrY_paternal_386.1;gene_name=LOC105377218;ID=intron:HG003_chrY_T0000568:0;Name=LOC105377218;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19077597	19077682	.	+	.	source_transcript=hg002_chrY_paternal_386.1;source_transcript_name=hg002_chrY_paternal_386.1;source_gene=hg002_chrY_paternal_386;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_386;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_386.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_386.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377218;alternative_source_transcripts=hg002_chrY_paternal_386.1,hg002_chrY_paternal_386.1;transcript_id=HG003_chrY_T0000568;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000568;transcript_name=hg002_chrY_paternal_386.1;gene_name=LOC105377218;ID=exon:HG003_chrY_T0000568:1;Name=LOC105377218;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19077683	19077770	.	+	.	source_transcript=hg002_chrY_paternal_386.1;source_transcript_name=hg002_chrY_paternal_386.1;source_gene=hg002_chrY_paternal_386;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_386;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_386.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_386.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377218;alternative_source_transcripts=hg002_chrY_paternal_386.1,hg002_chrY_paternal_386.1;transcript_id=HG003_chrY_T0000568;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000568;transcript_name=hg002_chrY_paternal_386.1;gene_name=LOC105377218;ID=intron:HG003_chrY_T0000568:1;Name=LOC105377218;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19077771	19078227	.	+	.	source_transcript=hg002_chrY_paternal_386.1;source_transcript_name=hg002_chrY_paternal_386.1;source_gene=hg002_chrY_paternal_386;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_386;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_386.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_386.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377218;alternative_source_transcripts=hg002_chrY_paternal_386.1,hg002_chrY_paternal_386.1;transcript_id=HG003_chrY_T0000568;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000568;transcript_name=hg002_chrY_paternal_386.1;gene_name=LOC105377218;ID=exon:HG003_chrY_T0000568:2;Name=LOC105377218;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19187285	19191576	.	+	.	source_gene_common_name=FAM224B;source_gene=hg002_chrY_paternal_389;alternative_source_transcripts=hg002_chrY_paternal_389.1,hg002_chrY_paternal_389.1;gene_id=HG003_chrY_G0000207;gene_biotype=lncRNA;gene_name=FAM224B;gene_sources=liftoff;ID=HG003_chrY_G0000207;Name=FAM224B
HG003_chrY	CAT	transcript	19187285	19191576	1000	+	.	source_transcript=hg002_chrY_paternal_389.1;source_transcript_name=hg002_chrY_paternal_389.1;source_gene=hg002_chrY_paternal_389;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_389;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_389.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_389.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=hg002_chrY_paternal_389.1,hg002_chrY_paternal_389.1;transcript_id=HG003_chrY_T0000569;gene_id=HG003_chrY_G0000207;Parent=HG003_chrY_G0000207;transcript_name=hg002_chrY_paternal_389.1;gene_name=FAM224B;ID=HG003_chrY_T0000569;Name=FAM224B
HG003_chrY	CAT	exon	19187285	19187421	.	+	.	source_transcript=hg002_chrY_paternal_389.1;source_transcript_name=hg002_chrY_paternal_389.1;source_gene=hg002_chrY_paternal_389;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_389;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_389.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_389.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=hg002_chrY_paternal_389.1,hg002_chrY_paternal_389.1;transcript_id=HG003_chrY_T0000569;gene_id=HG003_chrY_G0000207;Parent=HG003_chrY_T0000569;transcript_name=hg002_chrY_paternal_389.1;gene_name=FAM224B;ID=exon:HG003_chrY_T0000569:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19187422	19189916	.	+	.	source_transcript=hg002_chrY_paternal_389.1;source_transcript_name=hg002_chrY_paternal_389.1;source_gene=hg002_chrY_paternal_389;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_389;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_389.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_389.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=hg002_chrY_paternal_389.1,hg002_chrY_paternal_389.1;transcript_id=HG003_chrY_T0000569;gene_id=HG003_chrY_G0000207;Parent=HG003_chrY_T0000569;transcript_name=hg002_chrY_paternal_389.1;gene_name=FAM224B;ID=intron:HG003_chrY_T0000569:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19189917	19190034	.	+	.	source_transcript=hg002_chrY_paternal_389.1;source_transcript_name=hg002_chrY_paternal_389.1;source_gene=hg002_chrY_paternal_389;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_389;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_389.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_389.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=hg002_chrY_paternal_389.1,hg002_chrY_paternal_389.1;transcript_id=HG003_chrY_T0000569;gene_id=HG003_chrY_G0000207;Parent=HG003_chrY_T0000569;transcript_name=hg002_chrY_paternal_389.1;gene_name=FAM224B;ID=exon:HG003_chrY_T0000569:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19190035	19191369	.	+	.	source_transcript=hg002_chrY_paternal_389.1;source_transcript_name=hg002_chrY_paternal_389.1;source_gene=hg002_chrY_paternal_389;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_389;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_389.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_389.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=hg002_chrY_paternal_389.1,hg002_chrY_paternal_389.1;transcript_id=HG003_chrY_T0000569;gene_id=HG003_chrY_G0000207;Parent=HG003_chrY_T0000569;transcript_name=hg002_chrY_paternal_389.1;gene_name=FAM224B;ID=intron:HG003_chrY_T0000569:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19191370	19191576	.	+	.	source_transcript=hg002_chrY_paternal_389.1;source_transcript_name=hg002_chrY_paternal_389.1;source_gene=hg002_chrY_paternal_389;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_389;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_389.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_389.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=hg002_chrY_paternal_389.1,hg002_chrY_paternal_389.1;transcript_id=HG003_chrY_T0000569;gene_id=HG003_chrY_G0000207;Parent=HG003_chrY_T0000569;transcript_name=hg002_chrY_paternal_389.1;gene_name=FAM224B;ID=exon:HG003_chrY_T0000569:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19207904	19212596	.	+	.	source_gene_common_name=LOC105377220;source_gene=hg002_chrY_paternal_391;alternative_source_transcripts=hg002_chrY_paternal_391.1,hg002_chrY_paternal_391.1;gene_id=HG003_chrY_G0000208;gene_biotype=lncRNA;gene_name=LOC105377220;gene_sources=liftoff;ID=HG003_chrY_G0000208;Name=LOC105377220
HG003_chrY	CAT	transcript	19207904	19212596	1000	+	.	source_transcript=hg002_chrY_paternal_391.1;source_transcript_name=hg002_chrY_paternal_391.1;source_gene=hg002_chrY_paternal_391;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_391;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_391.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_391.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377220;alternative_source_transcripts=hg002_chrY_paternal_391.1,hg002_chrY_paternal_391.1;transcript_id=HG003_chrY_T0000570;gene_id=HG003_chrY_G0000208;Parent=HG003_chrY_G0000208;transcript_name=hg002_chrY_paternal_391.1;gene_name=LOC105377220;ID=HG003_chrY_T0000570;Name=LOC105377220
HG003_chrY	CAT	exon	19207904	19208678	.	+	.	source_transcript=hg002_chrY_paternal_391.1;source_transcript_name=hg002_chrY_paternal_391.1;source_gene=hg002_chrY_paternal_391;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_391;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_391.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_391.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377220;alternative_source_transcripts=hg002_chrY_paternal_391.1,hg002_chrY_paternal_391.1;transcript_id=HG003_chrY_T0000570;gene_id=HG003_chrY_G0000208;Parent=HG003_chrY_T0000570;transcript_name=hg002_chrY_paternal_391.1;gene_name=LOC105377220;ID=exon:HG003_chrY_T0000570:0;Name=LOC105377220;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19208679	19209890	.	+	.	source_transcript=hg002_chrY_paternal_391.1;source_transcript_name=hg002_chrY_paternal_391.1;source_gene=hg002_chrY_paternal_391;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_391;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_391.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_391.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377220;alternative_source_transcripts=hg002_chrY_paternal_391.1,hg002_chrY_paternal_391.1;transcript_id=HG003_chrY_T0000570;gene_id=HG003_chrY_G0000208;Parent=HG003_chrY_T0000570;transcript_name=hg002_chrY_paternal_391.1;gene_name=LOC105377220;ID=intron:HG003_chrY_T0000570:0;Name=LOC105377220;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19209891	19210019	.	+	.	source_transcript=hg002_chrY_paternal_391.1;source_transcript_name=hg002_chrY_paternal_391.1;source_gene=hg002_chrY_paternal_391;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_391;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_391.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_391.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377220;alternative_source_transcripts=hg002_chrY_paternal_391.1,hg002_chrY_paternal_391.1;transcript_id=HG003_chrY_T0000570;gene_id=HG003_chrY_G0000208;Parent=HG003_chrY_T0000570;transcript_name=hg002_chrY_paternal_391.1;gene_name=LOC105377220;ID=exon:HG003_chrY_T0000570:1;Name=LOC105377220;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19210020	19210729	.	+	.	source_transcript=hg002_chrY_paternal_391.1;source_transcript_name=hg002_chrY_paternal_391.1;source_gene=hg002_chrY_paternal_391;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_391;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_391.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_391.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377220;alternative_source_transcripts=hg002_chrY_paternal_391.1,hg002_chrY_paternal_391.1;transcript_id=HG003_chrY_T0000570;gene_id=HG003_chrY_G0000208;Parent=HG003_chrY_T0000570;transcript_name=hg002_chrY_paternal_391.1;gene_name=LOC105377220;ID=intron:HG003_chrY_T0000570:1;Name=LOC105377220;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19210730	19212596	.	+	.	source_transcript=hg002_chrY_paternal_391.1;source_transcript_name=hg002_chrY_paternal_391.1;source_gene=hg002_chrY_paternal_391;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_391;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_391.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_391.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377220;alternative_source_transcripts=hg002_chrY_paternal_391.1,hg002_chrY_paternal_391.1;transcript_id=HG003_chrY_T0000570;gene_id=HG003_chrY_G0000208;Parent=HG003_chrY_T0000570;transcript_name=hg002_chrY_paternal_391.1;gene_name=LOC105377220;ID=exon:HG003_chrY_T0000570:2;Name=LOC105377220;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19250000	19265782	.	-	.	source_gene_common_name=FAM41AY1;source_gene=hg002_chrY_paternal_394;alternative_source_transcripts=hg002_chrY_paternal_394.1,hg002_chrY_paternal_394.1;gene_id=HG003_chrY_G0000209;gene_biotype=lncRNA;gene_name=FAM41AY1;gene_sources=liftoff;ID=HG003_chrY_G0000209;Name=FAM41AY1
HG003_chrY	CAT	transcript	19250000	19265782	1000	-	.	source_transcript=hg002_chrY_paternal_394.1;source_transcript_name=hg002_chrY_paternal_394.1;source_gene=hg002_chrY_paternal_394;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_394;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_394.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_394.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;alternative_source_transcripts=hg002_chrY_paternal_394.1,hg002_chrY_paternal_394.1;transcript_id=HG003_chrY_T0000571;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_G0000209;transcript_name=hg002_chrY_paternal_394.1;gene_name=FAM41AY1;ID=HG003_chrY_T0000571;Name=FAM41AY1
HG003_chrY	CAT	exon	19250000	19250726	.	-	.	source_transcript=hg002_chrY_paternal_394.1;source_transcript_name=hg002_chrY_paternal_394.1;source_gene=hg002_chrY_paternal_394;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_394;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_394.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;alternative_source_transcripts=hg002_chrY_paternal_394.1,hg002_chrY_paternal_394.1;transcript_id=HG003_chrY_T0000571;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000571;transcript_name=hg002_chrY_paternal_394.1;gene_name=FAM41AY1;ID=exon:HG003_chrY_T0000571:0;Name=FAM41AY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19250727	19250808	.	-	.	source_transcript=hg002_chrY_paternal_394.1;source_transcript_name=hg002_chrY_paternal_394.1;source_gene=hg002_chrY_paternal_394;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_394;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_394.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;alternative_source_transcripts=hg002_chrY_paternal_394.1,hg002_chrY_paternal_394.1;transcript_id=HG003_chrY_T0000571;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000571;transcript_name=hg002_chrY_paternal_394.1;gene_name=FAM41AY1;ID=intron:HG003_chrY_T0000571:0;Name=FAM41AY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19250809	19251030	.	-	.	source_transcript=hg002_chrY_paternal_394.1;source_transcript_name=hg002_chrY_paternal_394.1;source_gene=hg002_chrY_paternal_394;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_394;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_394.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;alternative_source_transcripts=hg002_chrY_paternal_394.1,hg002_chrY_paternal_394.1;transcript_id=HG003_chrY_T0000571;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000571;transcript_name=hg002_chrY_paternal_394.1;gene_name=FAM41AY1;ID=exon:HG003_chrY_T0000571:1;Name=FAM41AY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19251031	19251242	.	-	.	source_transcript=hg002_chrY_paternal_394.1;source_transcript_name=hg002_chrY_paternal_394.1;source_gene=hg002_chrY_paternal_394;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_394;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_394.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;alternative_source_transcripts=hg002_chrY_paternal_394.1,hg002_chrY_paternal_394.1;transcript_id=HG003_chrY_T0000571;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000571;transcript_name=hg002_chrY_paternal_394.1;gene_name=FAM41AY1;ID=intron:HG003_chrY_T0000571:1;Name=FAM41AY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19251243	19251430	.	-	.	source_transcript=hg002_chrY_paternal_394.1;source_transcript_name=hg002_chrY_paternal_394.1;source_gene=hg002_chrY_paternal_394;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_394;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_394.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;alternative_source_transcripts=hg002_chrY_paternal_394.1,hg002_chrY_paternal_394.1;transcript_id=HG003_chrY_T0000571;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000571;transcript_name=hg002_chrY_paternal_394.1;gene_name=FAM41AY1;ID=exon:HG003_chrY_T0000571:2;Name=FAM41AY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19251431	19251723	.	-	.	source_transcript=hg002_chrY_paternal_394.1;source_transcript_name=hg002_chrY_paternal_394.1;source_gene=hg002_chrY_paternal_394;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_394;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_394.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;alternative_source_transcripts=hg002_chrY_paternal_394.1,hg002_chrY_paternal_394.1;transcript_id=HG003_chrY_T0000571;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000571;transcript_name=hg002_chrY_paternal_394.1;gene_name=FAM41AY1;ID=intron:HG003_chrY_T0000571:2;Name=FAM41AY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19251724	19251933	.	-	.	source_transcript=hg002_chrY_paternal_394.1;source_transcript_name=hg002_chrY_paternal_394.1;source_gene=hg002_chrY_paternal_394;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_394;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_394.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;alternative_source_transcripts=hg002_chrY_paternal_394.1,hg002_chrY_paternal_394.1;transcript_id=HG003_chrY_T0000571;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000571;transcript_name=hg002_chrY_paternal_394.1;gene_name=FAM41AY1;ID=exon:HG003_chrY_T0000571:3;Name=FAM41AY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19251934	19252207	.	-	.	source_transcript=hg002_chrY_paternal_394.1;source_transcript_name=hg002_chrY_paternal_394.1;source_gene=hg002_chrY_paternal_394;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_394;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_394.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;alternative_source_transcripts=hg002_chrY_paternal_394.1,hg002_chrY_paternal_394.1;transcript_id=HG003_chrY_T0000571;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000571;transcript_name=hg002_chrY_paternal_394.1;gene_name=FAM41AY1;ID=intron:HG003_chrY_T0000571:3;Name=FAM41AY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19252208	19252301	.	-	.	source_transcript=hg002_chrY_paternal_394.1;source_transcript_name=hg002_chrY_paternal_394.1;source_gene=hg002_chrY_paternal_394;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_394;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_394.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;alternative_source_transcripts=hg002_chrY_paternal_394.1,hg002_chrY_paternal_394.1;transcript_id=HG003_chrY_T0000571;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000571;transcript_name=hg002_chrY_paternal_394.1;gene_name=FAM41AY1;ID=exon:HG003_chrY_T0000571:4;Name=FAM41AY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19252302	19252410	.	-	.	source_transcript=hg002_chrY_paternal_394.1;source_transcript_name=hg002_chrY_paternal_394.1;source_gene=hg002_chrY_paternal_394;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_394;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_394.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;alternative_source_transcripts=hg002_chrY_paternal_394.1,hg002_chrY_paternal_394.1;transcript_id=HG003_chrY_T0000571;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000571;transcript_name=hg002_chrY_paternal_394.1;gene_name=FAM41AY1;ID=intron:HG003_chrY_T0000571:4;Name=FAM41AY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19252411	19252581	.	-	.	source_transcript=hg002_chrY_paternal_394.1;source_transcript_name=hg002_chrY_paternal_394.1;source_gene=hg002_chrY_paternal_394;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_394;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_394.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;alternative_source_transcripts=hg002_chrY_paternal_394.1,hg002_chrY_paternal_394.1;transcript_id=HG003_chrY_T0000571;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000571;transcript_name=hg002_chrY_paternal_394.1;gene_name=FAM41AY1;ID=exon:HG003_chrY_T0000571:5;Name=FAM41AY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19252582	19253174	.	-	.	source_transcript=hg002_chrY_paternal_394.1;source_transcript_name=hg002_chrY_paternal_394.1;source_gene=hg002_chrY_paternal_394;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_394;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_394.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;alternative_source_transcripts=hg002_chrY_paternal_394.1,hg002_chrY_paternal_394.1;transcript_id=HG003_chrY_T0000571;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000571;transcript_name=hg002_chrY_paternal_394.1;gene_name=FAM41AY1;ID=intron:HG003_chrY_T0000571:5;Name=FAM41AY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19253175	19253268	.	-	.	source_transcript=hg002_chrY_paternal_394.1;source_transcript_name=hg002_chrY_paternal_394.1;source_gene=hg002_chrY_paternal_394;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_394;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_394.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;alternative_source_transcripts=hg002_chrY_paternal_394.1,hg002_chrY_paternal_394.1;transcript_id=HG003_chrY_T0000571;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000571;transcript_name=hg002_chrY_paternal_394.1;gene_name=FAM41AY1;ID=exon:HG003_chrY_T0000571:6;Name=FAM41AY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19253269	19253515	.	-	.	source_transcript=hg002_chrY_paternal_394.1;source_transcript_name=hg002_chrY_paternal_394.1;source_gene=hg002_chrY_paternal_394;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_394;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_394.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;alternative_source_transcripts=hg002_chrY_paternal_394.1,hg002_chrY_paternal_394.1;transcript_id=HG003_chrY_T0000571;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000571;transcript_name=hg002_chrY_paternal_394.1;gene_name=FAM41AY1;ID=intron:HG003_chrY_T0000571:6;Name=FAM41AY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19253516	19253644	.	-	.	source_transcript=hg002_chrY_paternal_394.1;source_transcript_name=hg002_chrY_paternal_394.1;source_gene=hg002_chrY_paternal_394;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_394;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_394.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;alternative_source_transcripts=hg002_chrY_paternal_394.1,hg002_chrY_paternal_394.1;transcript_id=HG003_chrY_T0000571;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000571;transcript_name=hg002_chrY_paternal_394.1;gene_name=FAM41AY1;ID=exon:HG003_chrY_T0000571:7;Name=FAM41AY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19253645	19264979	.	-	.	source_transcript=hg002_chrY_paternal_394.1;source_transcript_name=hg002_chrY_paternal_394.1;source_gene=hg002_chrY_paternal_394;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_394;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_394.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;alternative_source_transcripts=hg002_chrY_paternal_394.1,hg002_chrY_paternal_394.1;transcript_id=HG003_chrY_T0000571;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000571;transcript_name=hg002_chrY_paternal_394.1;gene_name=FAM41AY1;ID=intron:HG003_chrY_T0000571:7;Name=FAM41AY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19264980	19265029	.	-	.	source_transcript=hg002_chrY_paternal_394.1;source_transcript_name=hg002_chrY_paternal_394.1;source_gene=hg002_chrY_paternal_394;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_394;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_394.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;alternative_source_transcripts=hg002_chrY_paternal_394.1,hg002_chrY_paternal_394.1;transcript_id=HG003_chrY_T0000571;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000571;transcript_name=hg002_chrY_paternal_394.1;gene_name=FAM41AY1;ID=exon:HG003_chrY_T0000571:8;Name=FAM41AY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19265030	19265624	.	-	.	source_transcript=hg002_chrY_paternal_394.1;source_transcript_name=hg002_chrY_paternal_394.1;source_gene=hg002_chrY_paternal_394;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_394;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_394.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;alternative_source_transcripts=hg002_chrY_paternal_394.1,hg002_chrY_paternal_394.1;transcript_id=HG003_chrY_T0000571;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000571;transcript_name=hg002_chrY_paternal_394.1;gene_name=FAM41AY1;ID=intron:HG003_chrY_T0000571:8;Name=FAM41AY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19265625	19265782	.	-	.	source_transcript=hg002_chrY_paternal_394.1;source_transcript_name=hg002_chrY_paternal_394.1;source_gene=hg002_chrY_paternal_394;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_394;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_394.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;alternative_source_transcripts=hg002_chrY_paternal_394.1,hg002_chrY_paternal_394.1;transcript_id=HG003_chrY_T0000571;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000571;transcript_name=hg002_chrY_paternal_394.1;gene_name=FAM41AY1;ID=exon:HG003_chrY_T0000571:9;Name=FAM41AY1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19344772	19378599	.	+	.	source_gene_common_name=LOC124905304;source_gene=hg002_chrY_paternal_398;alternative_source_transcripts=hg002_chrY_paternal_398.1,hg002_chrY_paternal_398.1;gene_id=HG003_chrY_G0000210;gene_biotype=lncRNA;gene_name=LOC124905304;gene_sources=liftoff;ID=HG003_chrY_G0000210;Name=LOC124905304
HG003_chrY	CAT	transcript	19344772	19378599	1000	+	.	source_transcript=hg002_chrY_paternal_398.1;source_transcript_name=hg002_chrY_paternal_398.1;source_gene=hg002_chrY_paternal_398;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_398;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_398.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_398.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905304;alternative_source_transcripts=hg002_chrY_paternal_398.1,hg002_chrY_paternal_398.1;transcript_id=HG003_chrY_T0000572;gene_id=HG003_chrY_G0000210;Parent=HG003_chrY_G0000210;transcript_name=hg002_chrY_paternal_398.1;gene_name=LOC124905304;ID=HG003_chrY_T0000572;Name=LOC124905304
HG003_chrY	CAT	exon	19344772	19344812	.	+	.	source_transcript=hg002_chrY_paternal_398.1;source_transcript_name=hg002_chrY_paternal_398.1;source_gene=hg002_chrY_paternal_398;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_398;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_398.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_398.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905304;alternative_source_transcripts=hg002_chrY_paternal_398.1,hg002_chrY_paternal_398.1;transcript_id=HG003_chrY_T0000572;gene_id=HG003_chrY_G0000210;Parent=HG003_chrY_T0000572;transcript_name=hg002_chrY_paternal_398.1;gene_name=LOC124905304;ID=exon:HG003_chrY_T0000572:0;Name=LOC124905304;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19344813	19347213	.	+	.	source_transcript=hg002_chrY_paternal_398.1;source_transcript_name=hg002_chrY_paternal_398.1;source_gene=hg002_chrY_paternal_398;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_398;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_398.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_398.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905304;alternative_source_transcripts=hg002_chrY_paternal_398.1,hg002_chrY_paternal_398.1;transcript_id=HG003_chrY_T0000572;gene_id=HG003_chrY_G0000210;Parent=HG003_chrY_T0000572;transcript_name=hg002_chrY_paternal_398.1;gene_name=LOC124905304;ID=intron:HG003_chrY_T0000572:0;Name=LOC124905304;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19347214	19347376	.	+	.	source_transcript=hg002_chrY_paternal_398.1;source_transcript_name=hg002_chrY_paternal_398.1;source_gene=hg002_chrY_paternal_398;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_398;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_398.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_398.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905304;alternative_source_transcripts=hg002_chrY_paternal_398.1,hg002_chrY_paternal_398.1;transcript_id=HG003_chrY_T0000572;gene_id=HG003_chrY_G0000210;Parent=HG003_chrY_T0000572;transcript_name=hg002_chrY_paternal_398.1;gene_name=LOC124905304;ID=exon:HG003_chrY_T0000572:1;Name=LOC124905304;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19347377	19348039	.	+	.	source_transcript=hg002_chrY_paternal_398.1;source_transcript_name=hg002_chrY_paternal_398.1;source_gene=hg002_chrY_paternal_398;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_398;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_398.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_398.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905304;alternative_source_transcripts=hg002_chrY_paternal_398.1,hg002_chrY_paternal_398.1;transcript_id=HG003_chrY_T0000572;gene_id=HG003_chrY_G0000210;Parent=HG003_chrY_T0000572;transcript_name=hg002_chrY_paternal_398.1;gene_name=LOC124905304;ID=intron:HG003_chrY_T0000572:1;Name=LOC124905304;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19348040	19348141	.	+	.	source_transcript=hg002_chrY_paternal_398.1;source_transcript_name=hg002_chrY_paternal_398.1;source_gene=hg002_chrY_paternal_398;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_398;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_398.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_398.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905304;alternative_source_transcripts=hg002_chrY_paternal_398.1,hg002_chrY_paternal_398.1;transcript_id=HG003_chrY_T0000572;gene_id=HG003_chrY_G0000210;Parent=HG003_chrY_T0000572;transcript_name=hg002_chrY_paternal_398.1;gene_name=LOC124905304;ID=exon:HG003_chrY_T0000572:2;Name=LOC124905304;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19348142	19350503	.	+	.	source_transcript=hg002_chrY_paternal_398.1;source_transcript_name=hg002_chrY_paternal_398.1;source_gene=hg002_chrY_paternal_398;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_398;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_398.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_398.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905304;alternative_source_transcripts=hg002_chrY_paternal_398.1,hg002_chrY_paternal_398.1;transcript_id=HG003_chrY_T0000572;gene_id=HG003_chrY_G0000210;Parent=HG003_chrY_T0000572;transcript_name=hg002_chrY_paternal_398.1;gene_name=LOC124905304;ID=intron:HG003_chrY_T0000572:2;Name=LOC124905304;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19350504	19350707	.	+	.	source_transcript=hg002_chrY_paternal_398.1;source_transcript_name=hg002_chrY_paternal_398.1;source_gene=hg002_chrY_paternal_398;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_398;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_398.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_398.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905304;alternative_source_transcripts=hg002_chrY_paternal_398.1,hg002_chrY_paternal_398.1;transcript_id=HG003_chrY_T0000572;gene_id=HG003_chrY_G0000210;Parent=HG003_chrY_T0000572;transcript_name=hg002_chrY_paternal_398.1;gene_name=LOC124905304;ID=exon:HG003_chrY_T0000572:3;Name=LOC124905304;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19350708	19352423	.	+	.	source_transcript=hg002_chrY_paternal_398.1;source_transcript_name=hg002_chrY_paternal_398.1;source_gene=hg002_chrY_paternal_398;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_398;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_398.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_398.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905304;alternative_source_transcripts=hg002_chrY_paternal_398.1,hg002_chrY_paternal_398.1;transcript_id=HG003_chrY_T0000572;gene_id=HG003_chrY_G0000210;Parent=HG003_chrY_T0000572;transcript_name=hg002_chrY_paternal_398.1;gene_name=LOC124905304;ID=intron:HG003_chrY_T0000572:3;Name=LOC124905304;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19352424	19352558	.	+	.	source_transcript=hg002_chrY_paternal_398.1;source_transcript_name=hg002_chrY_paternal_398.1;source_gene=hg002_chrY_paternal_398;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_398;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_398.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_398.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905304;alternative_source_transcripts=hg002_chrY_paternal_398.1,hg002_chrY_paternal_398.1;transcript_id=HG003_chrY_T0000572;gene_id=HG003_chrY_G0000210;Parent=HG003_chrY_T0000572;transcript_name=hg002_chrY_paternal_398.1;gene_name=LOC124905304;ID=exon:HG003_chrY_T0000572:4;Name=LOC124905304;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19352559	19361352	.	+	.	source_transcript=hg002_chrY_paternal_398.1;source_transcript_name=hg002_chrY_paternal_398.1;source_gene=hg002_chrY_paternal_398;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_398;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_398.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_398.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905304;alternative_source_transcripts=hg002_chrY_paternal_398.1,hg002_chrY_paternal_398.1;transcript_id=HG003_chrY_T0000572;gene_id=HG003_chrY_G0000210;Parent=HG003_chrY_T0000572;transcript_name=hg002_chrY_paternal_398.1;gene_name=LOC124905304;ID=intron:HG003_chrY_T0000572:4;Name=LOC124905304;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19361353	19361585	.	+	.	source_transcript=hg002_chrY_paternal_398.1;source_transcript_name=hg002_chrY_paternal_398.1;source_gene=hg002_chrY_paternal_398;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_398;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_398.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_398.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905304;alternative_source_transcripts=hg002_chrY_paternal_398.1,hg002_chrY_paternal_398.1;transcript_id=HG003_chrY_T0000572;gene_id=HG003_chrY_G0000210;Parent=HG003_chrY_T0000572;transcript_name=hg002_chrY_paternal_398.1;gene_name=LOC124905304;ID=exon:HG003_chrY_T0000572:5;Name=LOC124905304;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19361586	19361678	.	+	.	source_transcript=hg002_chrY_paternal_398.1;source_transcript_name=hg002_chrY_paternal_398.1;source_gene=hg002_chrY_paternal_398;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_398;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_398.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_398.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905304;alternative_source_transcripts=hg002_chrY_paternal_398.1,hg002_chrY_paternal_398.1;transcript_id=HG003_chrY_T0000572;gene_id=HG003_chrY_G0000210;Parent=HG003_chrY_T0000572;transcript_name=hg002_chrY_paternal_398.1;gene_name=LOC124905304;ID=intron:HG003_chrY_T0000572:5;Name=LOC124905304;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19361679	19361784	.	+	.	source_transcript=hg002_chrY_paternal_398.1;source_transcript_name=hg002_chrY_paternal_398.1;source_gene=hg002_chrY_paternal_398;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_398;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_398.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_398.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905304;alternative_source_transcripts=hg002_chrY_paternal_398.1,hg002_chrY_paternal_398.1;transcript_id=HG003_chrY_T0000572;gene_id=HG003_chrY_G0000210;Parent=HG003_chrY_T0000572;transcript_name=hg002_chrY_paternal_398.1;gene_name=LOC124905304;ID=exon:HG003_chrY_T0000572:6;Name=LOC124905304;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19361785	19367395	.	+	.	source_transcript=hg002_chrY_paternal_398.1;source_transcript_name=hg002_chrY_paternal_398.1;source_gene=hg002_chrY_paternal_398;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_398;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_398.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_398.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905304;alternative_source_transcripts=hg002_chrY_paternal_398.1,hg002_chrY_paternal_398.1;transcript_id=HG003_chrY_T0000572;gene_id=HG003_chrY_G0000210;Parent=HG003_chrY_T0000572;transcript_name=hg002_chrY_paternal_398.1;gene_name=LOC124905304;ID=intron:HG003_chrY_T0000572:6;Name=LOC124905304;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19367396	19367523	.	+	.	source_transcript=hg002_chrY_paternal_398.1;source_transcript_name=hg002_chrY_paternal_398.1;source_gene=hg002_chrY_paternal_398;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_398;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_398.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_398.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905304;alternative_source_transcripts=hg002_chrY_paternal_398.1,hg002_chrY_paternal_398.1;transcript_id=HG003_chrY_T0000572;gene_id=HG003_chrY_G0000210;Parent=HG003_chrY_T0000572;transcript_name=hg002_chrY_paternal_398.1;gene_name=LOC124905304;ID=exon:HG003_chrY_T0000572:7;Name=LOC124905304;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19367524	19376291	.	+	.	source_transcript=hg002_chrY_paternal_398.1;source_transcript_name=hg002_chrY_paternal_398.1;source_gene=hg002_chrY_paternal_398;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_398;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_398.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_398.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905304;alternative_source_transcripts=hg002_chrY_paternal_398.1,hg002_chrY_paternal_398.1;transcript_id=HG003_chrY_T0000572;gene_id=HG003_chrY_G0000210;Parent=HG003_chrY_T0000572;transcript_name=hg002_chrY_paternal_398.1;gene_name=LOC124905304;ID=intron:HG003_chrY_T0000572:7;Name=LOC124905304;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19376292	19378599	.	+	.	source_transcript=hg002_chrY_paternal_398.1;source_transcript_name=hg002_chrY_paternal_398.1;source_gene=hg002_chrY_paternal_398;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_398;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_398.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_398.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905304;alternative_source_transcripts=hg002_chrY_paternal_398.1,hg002_chrY_paternal_398.1;transcript_id=HG003_chrY_T0000572;gene_id=HG003_chrY_G0000210;Parent=HG003_chrY_T0000572;transcript_name=hg002_chrY_paternal_398.1;gene_name=LOC124905304;ID=exon:HG003_chrY_T0000572:8;Name=LOC124905304;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19390375	19449664	.	+	.	source_gene_common_name=HSFY1;source_gene=hg002_chrY_paternal_403;alternative_source_transcripts=hg002_chrY_paternal_403.1,hg002_chrY_paternal_403.1;gene_id=HG003_chrY_G0000211;gene_biotype=protein_coding;gene_name=HSFY1;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000211;Name=HSFY1
HG003_chrY	CAT	transcript	19390375	19409325	100	+	.	source_transcript=hg002_chrY_paternal_403.1;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.1,hg002_chrY_paternal_403.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000573;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_G0000211;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=HG003_chrY_T0000573;Name=HSFY1
HG003_chrY	CAT	exon	19390375	19390569	.	+	.	source_transcript=hg002_chrY_paternal_403.1;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.1,hg002_chrY_paternal_403.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000573;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000573;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=exon:HG003_chrY_T0000573:0;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	19390544	19390569	.	+	0	source_transcript=hg002_chrY_paternal_403.1;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.1,hg002_chrY_paternal_403.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000573;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000573;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=CDS:HG003_chrY_T0000573:0;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	19390544	19390546	.	+	0	source_transcript=hg002_chrY_paternal_403.1;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.1,hg002_chrY_paternal_403.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000573;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000573;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=start_codon:HG003_chrY_T0000573;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19390570	19407765	.	+	.	source_transcript=hg002_chrY_paternal_403.1;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.1,hg002_chrY_paternal_403.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000573;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000573;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=intron:HG003_chrY_T0000573:0;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19407766	19408033	.	+	.	source_transcript=hg002_chrY_paternal_403.1;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.1,hg002_chrY_paternal_403.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000573;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000573;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=exon:HG003_chrY_T0000573:1;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	19407766	19408033	.	+	1	source_transcript=hg002_chrY_paternal_403.1;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.1,hg002_chrY_paternal_403.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000573;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000573;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=CDS:HG003_chrY_T0000573:1;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19408034	19408511	.	+	.	source_transcript=hg002_chrY_paternal_403.1;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.1,hg002_chrY_paternal_403.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000573;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000573;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=intron:HG003_chrY_T0000573:1;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19408512	19409325	.	+	.	source_transcript=hg002_chrY_paternal_403.1;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.1,hg002_chrY_paternal_403.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000573;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000573;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=exon:HG003_chrY_T0000573:2;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	19408512	19409204	.	+	0	source_transcript=hg002_chrY_paternal_403.1;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.1,hg002_chrY_paternal_403.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000573;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000573;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=CDS:HG003_chrY_T0000573:2;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	19409202	19409204	.	+	0	source_transcript=hg002_chrY_paternal_403.1;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.1,hg002_chrY_paternal_403.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000573;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000573;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=stop_codon:HG003_chrY_T0000573;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19407414	19409325	100	+	.	source_transcript=hg002_chrY_paternal_403.2;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.2,hg002_chrY_paternal_403.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000574;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_G0000211;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=HG003_chrY_T0000574;Name=HSFY1
HG003_chrY	CAT	exon	19407414	19407667	.	+	.	source_transcript=hg002_chrY_paternal_403.2;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.2,hg002_chrY_paternal_403.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000574;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000574;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=exon:HG003_chrY_T0000574:0;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	19407657	19407667	.	+	0	source_transcript=hg002_chrY_paternal_403.2;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.2,hg002_chrY_paternal_403.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000574;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000574;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=CDS:HG003_chrY_T0000574:0;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	19407657	19407659	.	+	0	source_transcript=hg002_chrY_paternal_403.2;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.2,hg002_chrY_paternal_403.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000574;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000574;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=start_codon:HG003_chrY_T0000574;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19407668	19407765	.	+	.	source_transcript=hg002_chrY_paternal_403.2;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.2,hg002_chrY_paternal_403.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000574;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000574;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=intron:HG003_chrY_T0000574:0;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19407766	19408033	.	+	.	source_transcript=hg002_chrY_paternal_403.2;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.2,hg002_chrY_paternal_403.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000574;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000574;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=exon:HG003_chrY_T0000574:1;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	19407766	19408033	.	+	1	source_transcript=hg002_chrY_paternal_403.2;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.2,hg002_chrY_paternal_403.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000574;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000574;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=CDS:HG003_chrY_T0000574:1;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19408034	19408511	.	+	.	source_transcript=hg002_chrY_paternal_403.2;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.2,hg002_chrY_paternal_403.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000574;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000574;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=intron:HG003_chrY_T0000574:1;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19408512	19409325	.	+	.	source_transcript=hg002_chrY_paternal_403.2;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.2,hg002_chrY_paternal_403.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000574;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000574;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=exon:HG003_chrY_T0000574:2;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	19408512	19409204	.	+	0	source_transcript=hg002_chrY_paternal_403.2;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.2,hg002_chrY_paternal_403.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000574;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000574;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=CDS:HG003_chrY_T0000574:2;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	19409202	19409204	.	+	0	source_transcript=hg002_chrY_paternal_403.2;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.2,hg002_chrY_paternal_403.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000574;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000574;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=stop_codon:HG003_chrY_T0000574;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19407424	19449664	100	+	.	source_transcript=hg002_chrY_paternal_403.4;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.4,hg002_chrY_paternal_403.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000575;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_G0000211;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=HG003_chrY_T0000575;Name=HSFY1
HG003_chrY	CAT	exon	19407424	19408033	.	+	.	source_transcript=hg002_chrY_paternal_403.4;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.4,hg002_chrY_paternal_403.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000575;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000575;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=exon:HG003_chrY_T0000575:0;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	19407521	19408033	.	+	0	source_transcript=hg002_chrY_paternal_403.4;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.4,hg002_chrY_paternal_403.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000575;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000575;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=CDS:HG003_chrY_T0000575:0;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	19407521	19407523	.	+	0	source_transcript=hg002_chrY_paternal_403.4;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.4,hg002_chrY_paternal_403.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000575;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000575;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=start_codon:HG003_chrY_T0000575;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19408034	19449236	.	+	.	source_transcript=hg002_chrY_paternal_403.4;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.4,hg002_chrY_paternal_403.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000575;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000575;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=intron:HG003_chrY_T0000575:0;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19449237	19449664	.	+	.	source_transcript=hg002_chrY_paternal_403.4;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.4,hg002_chrY_paternal_403.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000575;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000575;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=exon:HG003_chrY_T0000575:1;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	19449237	19449335	.	+	0	source_transcript=hg002_chrY_paternal_403.4;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.4,hg002_chrY_paternal_403.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000575;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000575;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=CDS:HG003_chrY_T0000575:1;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	19449333	19449335	.	+	0	source_transcript=hg002_chrY_paternal_403.4;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.4,hg002_chrY_paternal_403.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000575;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000575;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=stop_codon:HG003_chrY_T0000575;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19407424	19412807	1000	+	.	source_transcript=hg002_chrY_paternal_403.3;source_transcript_name=hg002_chrY_paternal_403.1;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_403.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.3,hg002_chrY_paternal_403.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000576;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_G0000211;transcript_name=hg002_chrY_paternal_403.1;gene_name=HSFY1;ID=HG003_chrY_T0000576;Name=HSFY1
HG003_chrY	CAT	exon	19407424	19408033	.	+	.	source_transcript=hg002_chrY_paternal_403.3;source_transcript_name=hg002_chrY_paternal_403.1;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_403.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.3,hg002_chrY_paternal_403.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000576;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000576;transcript_name=hg002_chrY_paternal_403.1;gene_name=HSFY1;ID=exon:HG003_chrY_T0000576:0;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19408034	19410846	.	+	.	source_transcript=hg002_chrY_paternal_403.3;source_transcript_name=hg002_chrY_paternal_403.1;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_403.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.3,hg002_chrY_paternal_403.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000576;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000576;transcript_name=hg002_chrY_paternal_403.1;gene_name=HSFY1;ID=intron:HG003_chrY_T0000576:0;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19410847	19410956	.	+	.	source_transcript=hg002_chrY_paternal_403.3;source_transcript_name=hg002_chrY_paternal_403.1;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_403.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.3,hg002_chrY_paternal_403.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000576;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000576;transcript_name=hg002_chrY_paternal_403.1;gene_name=HSFY1;ID=exon:HG003_chrY_T0000576:1;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19410957	19411517	.	+	.	source_transcript=hg002_chrY_paternal_403.3;source_transcript_name=hg002_chrY_paternal_403.1;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_403.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.3,hg002_chrY_paternal_403.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000576;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000576;transcript_name=hg002_chrY_paternal_403.1;gene_name=HSFY1;ID=intron:HG003_chrY_T0000576:1;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19411518	19411604	.	+	.	source_transcript=hg002_chrY_paternal_403.3;source_transcript_name=hg002_chrY_paternal_403.1;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_403.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.3,hg002_chrY_paternal_403.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000576;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000576;transcript_name=hg002_chrY_paternal_403.1;gene_name=HSFY1;ID=exon:HG003_chrY_T0000576:2;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19411605	19412651	.	+	.	source_transcript=hg002_chrY_paternal_403.3;source_transcript_name=hg002_chrY_paternal_403.1;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_403.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.3,hg002_chrY_paternal_403.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000576;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000576;transcript_name=hg002_chrY_paternal_403.1;gene_name=HSFY1;ID=intron:HG003_chrY_T0000576:2;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19412652	19412807	.	+	.	source_transcript=hg002_chrY_paternal_403.3;source_transcript_name=hg002_chrY_paternal_403.1;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_403.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.3,hg002_chrY_paternal_403.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000576;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000576;transcript_name=hg002_chrY_paternal_403.1;gene_name=HSFY1;ID=exon:HG003_chrY_T0000576:3;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19407424	19449664	1000	+	.	source_transcript=hg002_chrY_paternal_403.5;source_transcript_name=hg002_chrY_paternal_403.1;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_403.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.5,hg002_chrY_paternal_403.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000577;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_G0000211;transcript_name=hg002_chrY_paternal_403.1;gene_name=HSFY1;ID=HG003_chrY_T0000577;Name=HSFY1
HG003_chrY	CAT	exon	19407424	19408033	.	+	.	source_transcript=hg002_chrY_paternal_403.5;source_transcript_name=hg002_chrY_paternal_403.1;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_403.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.5,hg002_chrY_paternal_403.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000577;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000577;transcript_name=hg002_chrY_paternal_403.1;gene_name=HSFY1;ID=exon:HG003_chrY_T0000577:0;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19408034	19410846	.	+	.	source_transcript=hg002_chrY_paternal_403.5;source_transcript_name=hg002_chrY_paternal_403.1;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_403.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.5,hg002_chrY_paternal_403.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000577;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000577;transcript_name=hg002_chrY_paternal_403.1;gene_name=HSFY1;ID=intron:HG003_chrY_T0000577:0;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19410847	19410956	.	+	.	source_transcript=hg002_chrY_paternal_403.5;source_transcript_name=hg002_chrY_paternal_403.1;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_403.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.5,hg002_chrY_paternal_403.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000577;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000577;transcript_name=hg002_chrY_paternal_403.1;gene_name=HSFY1;ID=exon:HG003_chrY_T0000577:1;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19410957	19411517	.	+	.	source_transcript=hg002_chrY_paternal_403.5;source_transcript_name=hg002_chrY_paternal_403.1;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_403.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.5,hg002_chrY_paternal_403.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000577;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000577;transcript_name=hg002_chrY_paternal_403.1;gene_name=HSFY1;ID=intron:HG003_chrY_T0000577:1;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19411518	19411604	.	+	.	source_transcript=hg002_chrY_paternal_403.5;source_transcript_name=hg002_chrY_paternal_403.1;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_403.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.5,hg002_chrY_paternal_403.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000577;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000577;transcript_name=hg002_chrY_paternal_403.1;gene_name=HSFY1;ID=exon:HG003_chrY_T0000577:2;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19411605	19412651	.	+	.	source_transcript=hg002_chrY_paternal_403.5;source_transcript_name=hg002_chrY_paternal_403.1;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_403.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.5,hg002_chrY_paternal_403.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000577;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000577;transcript_name=hg002_chrY_paternal_403.1;gene_name=HSFY1;ID=intron:HG003_chrY_T0000577:2;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19412652	19412806	.	+	.	source_transcript=hg002_chrY_paternal_403.5;source_transcript_name=hg002_chrY_paternal_403.1;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_403.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.5,hg002_chrY_paternal_403.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000577;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000577;transcript_name=hg002_chrY_paternal_403.1;gene_name=HSFY1;ID=exon:HG003_chrY_T0000577:3;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19412807	19443373	.	+	.	source_transcript=hg002_chrY_paternal_403.5;source_transcript_name=hg002_chrY_paternal_403.1;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_403.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.5,hg002_chrY_paternal_403.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000577;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000577;transcript_name=hg002_chrY_paternal_403.1;gene_name=HSFY1;ID=intron:HG003_chrY_T0000577:3;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19443374	19443459	.	+	.	source_transcript=hg002_chrY_paternal_403.5;source_transcript_name=hg002_chrY_paternal_403.1;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_403.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.5,hg002_chrY_paternal_403.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000577;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000577;transcript_name=hg002_chrY_paternal_403.1;gene_name=HSFY1;ID=exon:HG003_chrY_T0000577:4;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19443460	19449236	.	+	.	source_transcript=hg002_chrY_paternal_403.5;source_transcript_name=hg002_chrY_paternal_403.1;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_403.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.5,hg002_chrY_paternal_403.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000577;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000577;transcript_name=hg002_chrY_paternal_403.1;gene_name=HSFY1;ID=intron:HG003_chrY_T0000577:4;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19449237	19449664	.	+	.	source_transcript=hg002_chrY_paternal_403.5;source_transcript_name=hg002_chrY_paternal_403.1;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_403.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.5,hg002_chrY_paternal_403.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000577;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000577;transcript_name=hg002_chrY_paternal_403.1;gene_name=HSFY1;ID=exon:HG003_chrY_T0000577:5;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19407453	19409325	100	+	.	source_transcript=hg002_chrY_paternal_403.6;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.6,hg002_chrY_paternal_403.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000578;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_G0000211;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=HG003_chrY_T0000578;Name=HSFY1
HG003_chrY	CAT	exon	19407453	19408033	.	+	.	source_transcript=hg002_chrY_paternal_403.6;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.6,hg002_chrY_paternal_403.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000578;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000578;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=exon:HG003_chrY_T0000578:0;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	19407521	19408033	.	+	0	source_transcript=hg002_chrY_paternal_403.6;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.6,hg002_chrY_paternal_403.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000578;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000578;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=CDS:HG003_chrY_T0000578:0;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	19407521	19407523	.	+	0	source_transcript=hg002_chrY_paternal_403.6;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.6,hg002_chrY_paternal_403.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000578;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000578;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=start_codon:HG003_chrY_T0000578;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19408034	19408511	.	+	.	source_transcript=hg002_chrY_paternal_403.6;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.6,hg002_chrY_paternal_403.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000578;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000578;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=intron:HG003_chrY_T0000578:0;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19408512	19409325	.	+	.	source_transcript=hg002_chrY_paternal_403.6;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.6,hg002_chrY_paternal_403.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000578;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000578;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=exon:HG003_chrY_T0000578:1;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	19408512	19409204	.	+	0	source_transcript=hg002_chrY_paternal_403.6;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.6,hg002_chrY_paternal_403.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000578;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000578;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=CDS:HG003_chrY_T0000578:1;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	19409202	19409204	.	+	0	source_transcript=hg002_chrY_paternal_403.6;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.6,hg002_chrY_paternal_403.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000578;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000578;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=stop_codon:HG003_chrY_T0000578;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19441907	19451222	.	-	.	source_gene_common_name=TTTY9B;source_gene=hg002_chrY_paternal_407;alternative_source_transcripts=hg002_chrY_paternal_407.1,hg002_chrY_paternal_407.1;gene_id=HG003_chrY_G0000212;gene_biotype=lncRNA;gene_name=TTTY9B;gene_sources=liftoff;ID=HG003_chrY_G0000212;Name=TTTY9B
HG003_chrY	CAT	transcript	19441907	19451222	1000	-	.	source_transcript=hg002_chrY_paternal_407.1;source_transcript_name=hg002_chrY_paternal_407.1;source_gene=hg002_chrY_paternal_407;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_407;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_407.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_407.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9B;alternative_source_transcripts=hg002_chrY_paternal_407.1,hg002_chrY_paternal_407.1;transcript_id=HG003_chrY_T0000579;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_G0000212;transcript_name=hg002_chrY_paternal_407.1;gene_name=TTTY9B;ID=HG003_chrY_T0000579;Name=TTTY9B
HG003_chrY	CAT	exon	19441907	19443049	.	-	.	source_transcript=hg002_chrY_paternal_407.1;source_transcript_name=hg002_chrY_paternal_407.1;source_gene=hg002_chrY_paternal_407;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_407;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_407.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_407.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9B;alternative_source_transcripts=hg002_chrY_paternal_407.1,hg002_chrY_paternal_407.1;transcript_id=HG003_chrY_T0000579;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000579;transcript_name=hg002_chrY_paternal_407.1;gene_name=TTTY9B;ID=exon:HG003_chrY_T0000579:0;Name=TTTY9B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19443050	19448112	.	-	.	source_transcript=hg002_chrY_paternal_407.1;source_transcript_name=hg002_chrY_paternal_407.1;source_gene=hg002_chrY_paternal_407;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_407;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_407.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_407.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9B;alternative_source_transcripts=hg002_chrY_paternal_407.1,hg002_chrY_paternal_407.1;transcript_id=HG003_chrY_T0000579;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000579;transcript_name=hg002_chrY_paternal_407.1;gene_name=TTTY9B;ID=intron:HG003_chrY_T0000579:0;Name=TTTY9B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19448113	19448249	.	-	.	source_transcript=hg002_chrY_paternal_407.1;source_transcript_name=hg002_chrY_paternal_407.1;source_gene=hg002_chrY_paternal_407;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_407;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_407.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_407.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9B;alternative_source_transcripts=hg002_chrY_paternal_407.1,hg002_chrY_paternal_407.1;transcript_id=HG003_chrY_T0000579;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000579;transcript_name=hg002_chrY_paternal_407.1;gene_name=TTTY9B;ID=exon:HG003_chrY_T0000579:1;Name=TTTY9B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19448250	19448831	.	-	.	source_transcript=hg002_chrY_paternal_407.1;source_transcript_name=hg002_chrY_paternal_407.1;source_gene=hg002_chrY_paternal_407;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_407;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_407.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_407.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9B;alternative_source_transcripts=hg002_chrY_paternal_407.1,hg002_chrY_paternal_407.1;transcript_id=HG003_chrY_T0000579;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000579;transcript_name=hg002_chrY_paternal_407.1;gene_name=TTTY9B;ID=intron:HG003_chrY_T0000579:1;Name=TTTY9B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19448832	19448945	.	-	.	source_transcript=hg002_chrY_paternal_407.1;source_transcript_name=hg002_chrY_paternal_407.1;source_gene=hg002_chrY_paternal_407;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_407;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_407.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_407.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9B;alternative_source_transcripts=hg002_chrY_paternal_407.1,hg002_chrY_paternal_407.1;transcript_id=HG003_chrY_T0000579;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000579;transcript_name=hg002_chrY_paternal_407.1;gene_name=TTTY9B;ID=exon:HG003_chrY_T0000579:2;Name=TTTY9B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19448946	19449306	.	-	.	source_transcript=hg002_chrY_paternal_407.1;source_transcript_name=hg002_chrY_paternal_407.1;source_gene=hg002_chrY_paternal_407;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_407;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_407.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_407.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9B;alternative_source_transcripts=hg002_chrY_paternal_407.1,hg002_chrY_paternal_407.1;transcript_id=HG003_chrY_T0000579;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000579;transcript_name=hg002_chrY_paternal_407.1;gene_name=TTTY9B;ID=intron:HG003_chrY_T0000579:2;Name=TTTY9B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19449307	19449407	.	-	.	source_transcript=hg002_chrY_paternal_407.1;source_transcript_name=hg002_chrY_paternal_407.1;source_gene=hg002_chrY_paternal_407;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_407;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_407.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_407.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9B;alternative_source_transcripts=hg002_chrY_paternal_407.1,hg002_chrY_paternal_407.1;transcript_id=HG003_chrY_T0000579;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000579;transcript_name=hg002_chrY_paternal_407.1;gene_name=TTTY9B;ID=exon:HG003_chrY_T0000579:3;Name=TTTY9B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19449408	19451080	.	-	.	source_transcript=hg002_chrY_paternal_407.1;source_transcript_name=hg002_chrY_paternal_407.1;source_gene=hg002_chrY_paternal_407;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_407;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_407.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_407.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9B;alternative_source_transcripts=hg002_chrY_paternal_407.1,hg002_chrY_paternal_407.1;transcript_id=HG003_chrY_T0000579;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000579;transcript_name=hg002_chrY_paternal_407.1;gene_name=TTTY9B;ID=intron:HG003_chrY_T0000579:3;Name=TTTY9B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19451081	19451222	.	-	.	source_transcript=hg002_chrY_paternal_407.1;source_transcript_name=hg002_chrY_paternal_407.1;source_gene=hg002_chrY_paternal_407;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_407;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_407.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_407.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9B;alternative_source_transcripts=hg002_chrY_paternal_407.1,hg002_chrY_paternal_407.1;transcript_id=HG003_chrY_T0000579;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000579;transcript_name=hg002_chrY_paternal_407.1;gene_name=TTTY9B;ID=exon:HG003_chrY_T0000579:4;Name=TTTY9B;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19590601	19599916	.	+	.	source_gene_common_name=TTTY9A;source_gene=hg002_chrY_paternal_412;alternative_source_transcripts=hg002_chrY_paternal_412.1,hg002_chrY_paternal_412.1;gene_id=HG003_chrY_G0000213;gene_biotype=lncRNA;gene_name=TTTY9A;gene_sources=liftoff;ID=HG003_chrY_G0000213;Name=TTTY9A
HG003_chrY	CAT	transcript	19590601	19599916	1000	+	.	source_transcript=hg002_chrY_paternal_412.1;source_transcript_name=hg002_chrY_paternal_412.1;source_gene=hg002_chrY_paternal_412;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_412;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_412.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_412.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9A;alternative_source_transcripts=hg002_chrY_paternal_412.1,hg002_chrY_paternal_412.1;transcript_id=HG003_chrY_T0000580;gene_id=HG003_chrY_G0000213;Parent=HG003_chrY_G0000213;transcript_name=hg002_chrY_paternal_412.1;gene_name=TTTY9A;ID=HG003_chrY_T0000580;Name=TTTY9A
HG003_chrY	CAT	exon	19590601	19590742	.	+	.	source_transcript=hg002_chrY_paternal_412.1;source_transcript_name=hg002_chrY_paternal_412.1;source_gene=hg002_chrY_paternal_412;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_412;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_412.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_412.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9A;alternative_source_transcripts=hg002_chrY_paternal_412.1,hg002_chrY_paternal_412.1;transcript_id=HG003_chrY_T0000580;gene_id=HG003_chrY_G0000213;Parent=HG003_chrY_T0000580;transcript_name=hg002_chrY_paternal_412.1;gene_name=TTTY9A;ID=exon:HG003_chrY_T0000580:0;Name=TTTY9A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19590743	19592415	.	+	.	source_transcript=hg002_chrY_paternal_412.1;source_transcript_name=hg002_chrY_paternal_412.1;source_gene=hg002_chrY_paternal_412;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_412;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_412.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_412.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9A;alternative_source_transcripts=hg002_chrY_paternal_412.1,hg002_chrY_paternal_412.1;transcript_id=HG003_chrY_T0000580;gene_id=HG003_chrY_G0000213;Parent=HG003_chrY_T0000580;transcript_name=hg002_chrY_paternal_412.1;gene_name=TTTY9A;ID=intron:HG003_chrY_T0000580:0;Name=TTTY9A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19592416	19592516	.	+	.	source_transcript=hg002_chrY_paternal_412.1;source_transcript_name=hg002_chrY_paternal_412.1;source_gene=hg002_chrY_paternal_412;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_412;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_412.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_412.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9A;alternative_source_transcripts=hg002_chrY_paternal_412.1,hg002_chrY_paternal_412.1;transcript_id=HG003_chrY_T0000580;gene_id=HG003_chrY_G0000213;Parent=HG003_chrY_T0000580;transcript_name=hg002_chrY_paternal_412.1;gene_name=TTTY9A;ID=exon:HG003_chrY_T0000580:1;Name=TTTY9A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19592517	19592877	.	+	.	source_transcript=hg002_chrY_paternal_412.1;source_transcript_name=hg002_chrY_paternal_412.1;source_gene=hg002_chrY_paternal_412;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_412;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_412.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_412.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9A;alternative_source_transcripts=hg002_chrY_paternal_412.1,hg002_chrY_paternal_412.1;transcript_id=HG003_chrY_T0000580;gene_id=HG003_chrY_G0000213;Parent=HG003_chrY_T0000580;transcript_name=hg002_chrY_paternal_412.1;gene_name=TTTY9A;ID=intron:HG003_chrY_T0000580:1;Name=TTTY9A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19592878	19592991	.	+	.	source_transcript=hg002_chrY_paternal_412.1;source_transcript_name=hg002_chrY_paternal_412.1;source_gene=hg002_chrY_paternal_412;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_412;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_412.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_412.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9A;alternative_source_transcripts=hg002_chrY_paternal_412.1,hg002_chrY_paternal_412.1;transcript_id=HG003_chrY_T0000580;gene_id=HG003_chrY_G0000213;Parent=HG003_chrY_T0000580;transcript_name=hg002_chrY_paternal_412.1;gene_name=TTTY9A;ID=exon:HG003_chrY_T0000580:2;Name=TTTY9A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19592992	19593573	.	+	.	source_transcript=hg002_chrY_paternal_412.1;source_transcript_name=hg002_chrY_paternal_412.1;source_gene=hg002_chrY_paternal_412;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_412;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_412.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_412.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9A;alternative_source_transcripts=hg002_chrY_paternal_412.1,hg002_chrY_paternal_412.1;transcript_id=HG003_chrY_T0000580;gene_id=HG003_chrY_G0000213;Parent=HG003_chrY_T0000580;transcript_name=hg002_chrY_paternal_412.1;gene_name=TTTY9A;ID=intron:HG003_chrY_T0000580:2;Name=TTTY9A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19593574	19593710	.	+	.	source_transcript=hg002_chrY_paternal_412.1;source_transcript_name=hg002_chrY_paternal_412.1;source_gene=hg002_chrY_paternal_412;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_412;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_412.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_412.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9A;alternative_source_transcripts=hg002_chrY_paternal_412.1,hg002_chrY_paternal_412.1;transcript_id=HG003_chrY_T0000580;gene_id=HG003_chrY_G0000213;Parent=HG003_chrY_T0000580;transcript_name=hg002_chrY_paternal_412.1;gene_name=TTTY9A;ID=exon:HG003_chrY_T0000580:3;Name=TTTY9A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19593711	19598773	.	+	.	source_transcript=hg002_chrY_paternal_412.1;source_transcript_name=hg002_chrY_paternal_412.1;source_gene=hg002_chrY_paternal_412;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_412;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_412.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_412.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9A;alternative_source_transcripts=hg002_chrY_paternal_412.1,hg002_chrY_paternal_412.1;transcript_id=HG003_chrY_T0000580;gene_id=HG003_chrY_G0000213;Parent=HG003_chrY_T0000580;transcript_name=hg002_chrY_paternal_412.1;gene_name=TTTY9A;ID=intron:HG003_chrY_T0000580:3;Name=TTTY9A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19598774	19599916	.	+	.	source_transcript=hg002_chrY_paternal_412.1;source_transcript_name=hg002_chrY_paternal_412.1;source_gene=hg002_chrY_paternal_412;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_412;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_412.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_412.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9A;alternative_source_transcripts=hg002_chrY_paternal_412.1,hg002_chrY_paternal_412.1;transcript_id=HG003_chrY_T0000580;gene_id=HG003_chrY_G0000213;Parent=HG003_chrY_T0000580;transcript_name=hg002_chrY_paternal_412.1;gene_name=TTTY9A;ID=exon:HG003_chrY_T0000580:4;Name=TTTY9A;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19592159	19651473	.	-	.	source_gene_common_name=HSFY2;source_gene=hg002_chrY_paternal_413;alternative_source_transcripts=hg002_chrY_paternal_413.1,hg002_chrY_paternal_413.1;gene_id=HG003_chrY_G0000214;gene_biotype=protein_coding;gene_name=HSFY2;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000214;Name=HSFY2
HG003_chrY	CAT	transcript	19592159	19634443	100	-	.	source_transcript=hg002_chrY_paternal_413.1;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.1,hg002_chrY_paternal_413.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000581;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_G0000214;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=HG003_chrY_T0000581;Name=HSFY2
HG003_chrY	CAT	exon	19592159	19592586	.	-	.	source_transcript=hg002_chrY_paternal_413.1;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.1,hg002_chrY_paternal_413.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000581;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000581;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=exon:HG003_chrY_T0000581:0;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	19592488	19592586	.	-	0	source_transcript=hg002_chrY_paternal_413.1;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.1,hg002_chrY_paternal_413.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000581;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000581;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=CDS:HG003_chrY_T0000581:0;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	19592488	19592490	.	-	0	source_transcript=hg002_chrY_paternal_413.1;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.1,hg002_chrY_paternal_413.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000581;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000581;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=stop_codon:HG003_chrY_T0000581;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19592587	19633813	.	-	.	source_transcript=hg002_chrY_paternal_413.1;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.1,hg002_chrY_paternal_413.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000581;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000581;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=intron:HG003_chrY_T0000581:0;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19633814	19634443	.	-	.	source_transcript=hg002_chrY_paternal_413.1;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.1,hg002_chrY_paternal_413.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000581;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000581;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=exon:HG003_chrY_T0000581:1;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	19633814	19634326	.	-	0	source_transcript=hg002_chrY_paternal_413.1;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.1,hg002_chrY_paternal_413.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000581;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000581;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=CDS:HG003_chrY_T0000581:1;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	19634324	19634326	.	-	0	source_transcript=hg002_chrY_paternal_413.1;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.1,hg002_chrY_paternal_413.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000581;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000581;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=start_codon:HG003_chrY_T0000581;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19592159	19634443	1000	-	.	source_transcript=hg002_chrY_paternal_413.2;source_transcript_name=hg002_chrY_paternal_413.1;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_413.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.2,hg002_chrY_paternal_413.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000582;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_G0000214;transcript_name=hg002_chrY_paternal_413.1;gene_name=HSFY2;ID=HG003_chrY_T0000582;Name=HSFY2
HG003_chrY	CAT	exon	19592159	19592586	.	-	.	source_transcript=hg002_chrY_paternal_413.2;source_transcript_name=hg002_chrY_paternal_413.1;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_413.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.2,hg002_chrY_paternal_413.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000582;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000582;transcript_name=hg002_chrY_paternal_413.1;gene_name=HSFY2;ID=exon:HG003_chrY_T0000582:0;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19592587	19598363	.	-	.	source_transcript=hg002_chrY_paternal_413.2;source_transcript_name=hg002_chrY_paternal_413.1;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_413.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.2,hg002_chrY_paternal_413.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000582;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000582;transcript_name=hg002_chrY_paternal_413.1;gene_name=HSFY2;ID=intron:HG003_chrY_T0000582:0;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19598364	19598449	.	-	.	source_transcript=hg002_chrY_paternal_413.2;source_transcript_name=hg002_chrY_paternal_413.1;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_413.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.2,hg002_chrY_paternal_413.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000582;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000582;transcript_name=hg002_chrY_paternal_413.1;gene_name=HSFY2;ID=exon:HG003_chrY_T0000582:1;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19598450	19629040	.	-	.	source_transcript=hg002_chrY_paternal_413.2;source_transcript_name=hg002_chrY_paternal_413.1;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_413.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.2,hg002_chrY_paternal_413.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000582;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000582;transcript_name=hg002_chrY_paternal_413.1;gene_name=HSFY2;ID=intron:HG003_chrY_T0000582:1;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19629041	19629195	.	-	.	source_transcript=hg002_chrY_paternal_413.2;source_transcript_name=hg002_chrY_paternal_413.1;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_413.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.2,hg002_chrY_paternal_413.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000582;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000582;transcript_name=hg002_chrY_paternal_413.1;gene_name=HSFY2;ID=exon:HG003_chrY_T0000582:2;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19629196	19630242	.	-	.	source_transcript=hg002_chrY_paternal_413.2;source_transcript_name=hg002_chrY_paternal_413.1;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_413.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.2,hg002_chrY_paternal_413.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000582;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000582;transcript_name=hg002_chrY_paternal_413.1;gene_name=HSFY2;ID=intron:HG003_chrY_T0000582:2;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19630243	19630329	.	-	.	source_transcript=hg002_chrY_paternal_413.2;source_transcript_name=hg002_chrY_paternal_413.1;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_413.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.2,hg002_chrY_paternal_413.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000582;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000582;transcript_name=hg002_chrY_paternal_413.1;gene_name=HSFY2;ID=exon:HG003_chrY_T0000582:3;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19630330	19630890	.	-	.	source_transcript=hg002_chrY_paternal_413.2;source_transcript_name=hg002_chrY_paternal_413.1;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_413.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.2,hg002_chrY_paternal_413.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000582;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000582;transcript_name=hg002_chrY_paternal_413.1;gene_name=HSFY2;ID=intron:HG003_chrY_T0000582:3;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19630891	19631000	.	-	.	source_transcript=hg002_chrY_paternal_413.2;source_transcript_name=hg002_chrY_paternal_413.1;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_413.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.2,hg002_chrY_paternal_413.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000582;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000582;transcript_name=hg002_chrY_paternal_413.1;gene_name=HSFY2;ID=exon:HG003_chrY_T0000582:4;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19631001	19633813	.	-	.	source_transcript=hg002_chrY_paternal_413.2;source_transcript_name=hg002_chrY_paternal_413.1;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_413.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.2,hg002_chrY_paternal_413.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000582;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000582;transcript_name=hg002_chrY_paternal_413.1;gene_name=HSFY2;ID=intron:HG003_chrY_T0000582:4;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19633814	19634443	.	-	.	source_transcript=hg002_chrY_paternal_413.2;source_transcript_name=hg002_chrY_paternal_413.1;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_413.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.2,hg002_chrY_paternal_413.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000582;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000582;transcript_name=hg002_chrY_paternal_413.1;gene_name=HSFY2;ID=exon:HG003_chrY_T0000582:5;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19630218	19634443	100	-	.	source_transcript=hg002_chrY_paternal_413.3;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.3,hg002_chrY_paternal_413.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000583;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_G0000214;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=HG003_chrY_T0000583;Name=HSFY2
HG003_chrY	CAT	exon	19630218	19630329	.	-	.	source_transcript=hg002_chrY_paternal_413.3;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.3,hg002_chrY_paternal_413.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000583;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000583;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=exon:HG003_chrY_T0000583:0;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	19630308	19630329	.	-	1	source_transcript=hg002_chrY_paternal_413.3;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.3,hg002_chrY_paternal_413.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000583;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000583;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=CDS:HG003_chrY_T0000583:0;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	19630308	19630310	.	-	0	source_transcript=hg002_chrY_paternal_413.3;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.3,hg002_chrY_paternal_413.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000583;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000583;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=stop_codon:HG003_chrY_T0000583;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19630330	19630890	.	-	.	source_transcript=hg002_chrY_paternal_413.3;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.3,hg002_chrY_paternal_413.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000583;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000583;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=intron:HG003_chrY_T0000583:0;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19630891	19631000	.	-	.	source_transcript=hg002_chrY_paternal_413.3;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.3,hg002_chrY_paternal_413.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000583;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000583;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=exon:HG003_chrY_T0000583:1;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	19630891	19631000	.	-	0	source_transcript=hg002_chrY_paternal_413.3;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.3,hg002_chrY_paternal_413.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000583;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000583;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=CDS:HG003_chrY_T0000583:1;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19631001	19633813	.	-	.	source_transcript=hg002_chrY_paternal_413.3;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.3,hg002_chrY_paternal_413.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000583;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000583;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=intron:HG003_chrY_T0000583:1;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19633814	19634443	.	-	.	source_transcript=hg002_chrY_paternal_413.3;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.3,hg002_chrY_paternal_413.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000583;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000583;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=exon:HG003_chrY_T0000583:2;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	19633814	19634326	.	-	0	source_transcript=hg002_chrY_paternal_413.3;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.3,hg002_chrY_paternal_413.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000583;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000583;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=CDS:HG003_chrY_T0000583:2;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	19634324	19634326	.	-	0	source_transcript=hg002_chrY_paternal_413.3;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.3,hg002_chrY_paternal_413.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000583;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000583;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=start_codon:HG003_chrY_T0000583;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19632522	19634434	100	-	.	source_transcript=hg002_chrY_paternal_413.4;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.4,hg002_chrY_paternal_413.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000584;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_G0000214;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=HG003_chrY_T0000584;Name=HSFY2
HG003_chrY	CAT	exon	19632522	19633335	.	-	.	source_transcript=hg002_chrY_paternal_413.4;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.4,hg002_chrY_paternal_413.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000584;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000584;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=exon:HG003_chrY_T0000584:0;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	19632643	19633335	.	-	0	source_transcript=hg002_chrY_paternal_413.4;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.4,hg002_chrY_paternal_413.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000584;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000584;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=CDS:HG003_chrY_T0000584:0;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	19632643	19632645	.	-	0	source_transcript=hg002_chrY_paternal_413.4;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.4,hg002_chrY_paternal_413.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000584;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000584;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=stop_codon:HG003_chrY_T0000584;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19633336	19633813	.	-	.	source_transcript=hg002_chrY_paternal_413.4;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.4,hg002_chrY_paternal_413.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000584;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000584;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=intron:HG003_chrY_T0000584:0;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19633814	19634081	.	-	.	source_transcript=hg002_chrY_paternal_413.4;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.4,hg002_chrY_paternal_413.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000584;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000584;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=exon:HG003_chrY_T0000584:1;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	19633814	19634081	.	-	1	source_transcript=hg002_chrY_paternal_413.4;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.4,hg002_chrY_paternal_413.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000584;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000584;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=CDS:HG003_chrY_T0000584:1;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19634082	19634179	.	-	.	source_transcript=hg002_chrY_paternal_413.4;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.4,hg002_chrY_paternal_413.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000584;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000584;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=intron:HG003_chrY_T0000584:1;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19634180	19634434	.	-	.	source_transcript=hg002_chrY_paternal_413.4;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.4,hg002_chrY_paternal_413.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000584;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000584;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=exon:HG003_chrY_T0000584:2;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	19634180	19634190	.	-	0	source_transcript=hg002_chrY_paternal_413.4;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.4,hg002_chrY_paternal_413.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000584;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000584;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=CDS:HG003_chrY_T0000584:2;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	19634188	19634190	.	-	0	source_transcript=hg002_chrY_paternal_413.4;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.4,hg002_chrY_paternal_413.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000584;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000584;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=start_codon:HG003_chrY_T0000584;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19632522	19634443	100	-	.	source_transcript=hg002_chrY_paternal_413.5;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.5,hg002_chrY_paternal_413.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000585;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_G0000214;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=HG003_chrY_T0000585;Name=HSFY2
HG003_chrY	CAT	exon	19632522	19633335	.	-	.	source_transcript=hg002_chrY_paternal_413.5;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.5,hg002_chrY_paternal_413.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000585;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000585;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=exon:HG003_chrY_T0000585:0;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	19632643	19633335	.	-	0	source_transcript=hg002_chrY_paternal_413.5;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.5,hg002_chrY_paternal_413.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000585;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000585;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=CDS:HG003_chrY_T0000585:0;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	19632643	19632645	.	-	0	source_transcript=hg002_chrY_paternal_413.5;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.5,hg002_chrY_paternal_413.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000585;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000585;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=stop_codon:HG003_chrY_T0000585;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19633336	19633813	.	-	.	source_transcript=hg002_chrY_paternal_413.5;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.5,hg002_chrY_paternal_413.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000585;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000585;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=intron:HG003_chrY_T0000585:0;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19633814	19634443	.	-	.	source_transcript=hg002_chrY_paternal_413.5;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.5,hg002_chrY_paternal_413.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000585;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000585;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=exon:HG003_chrY_T0000585:1;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	19633814	19634326	.	-	0	source_transcript=hg002_chrY_paternal_413.5;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.5,hg002_chrY_paternal_413.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000585;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000585;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=CDS:HG003_chrY_T0000585:1;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	19634324	19634326	.	-	0	source_transcript=hg002_chrY_paternal_413.5;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.5,hg002_chrY_paternal_413.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000585;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000585;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=start_codon:HG003_chrY_T0000585;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19632522	19651473	100	-	.	source_transcript=hg002_chrY_paternal_413.6;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.6,hg002_chrY_paternal_413.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000586;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_G0000214;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=HG003_chrY_T0000586;Name=HSFY2
HG003_chrY	CAT	exon	19632522	19633335	.	-	.	source_transcript=hg002_chrY_paternal_413.6;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.6,hg002_chrY_paternal_413.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000586;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000586;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=exon:HG003_chrY_T0000586:0;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	19632643	19633335	.	-	0	source_transcript=hg002_chrY_paternal_413.6;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.6,hg002_chrY_paternal_413.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000586;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000586;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=CDS:HG003_chrY_T0000586:0;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	19632643	19632645	.	-	0	source_transcript=hg002_chrY_paternal_413.6;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.6,hg002_chrY_paternal_413.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000586;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000586;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=stop_codon:HG003_chrY_T0000586;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19633336	19633813	.	-	.	source_transcript=hg002_chrY_paternal_413.6;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.6,hg002_chrY_paternal_413.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000586;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000586;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=intron:HG003_chrY_T0000586:0;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19633814	19634081	.	-	.	source_transcript=hg002_chrY_paternal_413.6;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.6,hg002_chrY_paternal_413.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000586;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000586;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=exon:HG003_chrY_T0000586:1;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	19633814	19634081	.	-	1	source_transcript=hg002_chrY_paternal_413.6;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.6,hg002_chrY_paternal_413.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000586;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000586;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=CDS:HG003_chrY_T0000586:1;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19634082	19651278	.	-	.	source_transcript=hg002_chrY_paternal_413.6;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.6,hg002_chrY_paternal_413.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000586;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000586;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=intron:HG003_chrY_T0000586:1;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19651279	19651473	.	-	.	source_transcript=hg002_chrY_paternal_413.6;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.6,hg002_chrY_paternal_413.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000586;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000586;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=exon:HG003_chrY_T0000586:2;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	19651279	19651304	.	-	0	source_transcript=hg002_chrY_paternal_413.6;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.6,hg002_chrY_paternal_413.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000586;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000586;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=CDS:HG003_chrY_T0000586:2;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	19651302	19651304	.	-	0	source_transcript=hg002_chrY_paternal_413.6;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.6,hg002_chrY_paternal_413.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000586;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000586;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=start_codon:HG003_chrY_T0000586;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19663250	19697113	.	-	.	source_gene_common_name=LOC124905305;source_gene=hg002_chrY_paternal_418;gene_id=HG003_chrY_G0000215;gene_biotype=lncRNA;gene_name=LOC124905305;gene_sources=liftoff;ID=HG003_chrY_G0000215;Name=LOC124905305
HG003_chrY	CAT	transcript	19663250	19697113	1000	-	.	source_transcript=hg002_chrY_paternal_418.2;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=HG003_chrY_T0000587;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_G0000215;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=HG003_chrY_T0000587;Name=LOC124905305
HG003_chrY	CAT	exon	19663250	19665557	.	-	.	source_transcript=hg002_chrY_paternal_418.2;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=HG003_chrY_T0000587;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000587;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=exon:HG003_chrY_T0000587:0;Name=LOC124905305;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19665558	19680061	.	-	.	source_transcript=hg002_chrY_paternal_418.2;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=HG003_chrY_T0000587;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000587;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=intron:HG003_chrY_T0000587:0;Name=LOC124905305;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19680062	19680493	.	-	.	source_transcript=hg002_chrY_paternal_418.2;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=HG003_chrY_T0000587;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000587;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=exon:HG003_chrY_T0000587:1;Name=LOC124905305;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19680494	19689298	.	-	.	source_transcript=hg002_chrY_paternal_418.2;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=HG003_chrY_T0000587;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000587;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=intron:HG003_chrY_T0000587:1;Name=LOC124905305;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19689299	19689433	.	-	.	source_transcript=hg002_chrY_paternal_418.2;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=HG003_chrY_T0000587;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000587;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=exon:HG003_chrY_T0000587:2;Name=LOC124905305;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19689434	19691149	.	-	.	source_transcript=hg002_chrY_paternal_418.2;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=HG003_chrY_T0000587;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000587;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=intron:HG003_chrY_T0000587:2;Name=LOC124905305;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19691150	19691353	.	-	.	source_transcript=hg002_chrY_paternal_418.2;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=HG003_chrY_T0000587;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000587;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=exon:HG003_chrY_T0000587:3;Name=LOC124905305;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19691354	19693715	.	-	.	source_transcript=hg002_chrY_paternal_418.2;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=HG003_chrY_T0000587;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000587;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=intron:HG003_chrY_T0000587:3;Name=LOC124905305;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19693716	19693817	.	-	.	source_transcript=hg002_chrY_paternal_418.2;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=HG003_chrY_T0000587;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000587;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=exon:HG003_chrY_T0000587:4;Name=LOC124905305;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19693818	19694470	.	-	.	source_transcript=hg002_chrY_paternal_418.2;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=HG003_chrY_T0000587;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000587;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=intron:HG003_chrY_T0000587:4;Name=LOC124905305;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19694471	19694633	.	-	.	source_transcript=hg002_chrY_paternal_418.2;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=HG003_chrY_T0000587;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000587;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=exon:HG003_chrY_T0000587:5;Name=LOC124905305;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19694634	19697034	.	-	.	source_transcript=hg002_chrY_paternal_418.2;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=HG003_chrY_T0000587;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000587;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=intron:HG003_chrY_T0000587:5;Name=LOC124905305;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19697035	19697113	.	-	.	source_transcript=hg002_chrY_paternal_418.2;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=HG003_chrY_T0000587;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000587;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=exon:HG003_chrY_T0000587:6;Name=LOC124905305;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19663250	19697111	1000	-	.	source_transcript=hg002_chrY_paternal_418.1;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=HG003_chrY_T0000588;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_G0000215;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=HG003_chrY_T0000588;Name=LOC124905305
HG003_chrY	CAT	exon	19663250	19665557	.	-	.	source_transcript=hg002_chrY_paternal_418.1;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=HG003_chrY_T0000588;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000588;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=exon:HG003_chrY_T0000588:0;Name=LOC124905305;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19665558	19674322	.	-	.	source_transcript=hg002_chrY_paternal_418.1;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=HG003_chrY_T0000588;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000588;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=intron:HG003_chrY_T0000588:0;Name=LOC124905305;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19674323	19674450	.	-	.	source_transcript=hg002_chrY_paternal_418.1;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=HG003_chrY_T0000588;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000588;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=exon:HG003_chrY_T0000588:1;Name=LOC124905305;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19674451	19680061	.	-	.	source_transcript=hg002_chrY_paternal_418.1;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=HG003_chrY_T0000588;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000588;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=intron:HG003_chrY_T0000588:1;Name=LOC124905305;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19680062	19680493	.	-	.	source_transcript=hg002_chrY_paternal_418.1;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=HG003_chrY_T0000588;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000588;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=exon:HG003_chrY_T0000588:2;Name=LOC124905305;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19680494	19689298	.	-	.	source_transcript=hg002_chrY_paternal_418.1;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=HG003_chrY_T0000588;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000588;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=intron:HG003_chrY_T0000588:2;Name=LOC124905305;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19689299	19689433	.	-	.	source_transcript=hg002_chrY_paternal_418.1;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=HG003_chrY_T0000588;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000588;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=exon:HG003_chrY_T0000588:3;Name=LOC124905305;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19689434	19691149	.	-	.	source_transcript=hg002_chrY_paternal_418.1;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=HG003_chrY_T0000588;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000588;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=intron:HG003_chrY_T0000588:3;Name=LOC124905305;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19691150	19691353	.	-	.	source_transcript=hg002_chrY_paternal_418.1;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=HG003_chrY_T0000588;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000588;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=exon:HG003_chrY_T0000588:4;Name=LOC124905305;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19691354	19693715	.	-	.	source_transcript=hg002_chrY_paternal_418.1;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=HG003_chrY_T0000588;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000588;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=intron:HG003_chrY_T0000588:4;Name=LOC124905305;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19693716	19693817	.	-	.	source_transcript=hg002_chrY_paternal_418.1;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=HG003_chrY_T0000588;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000588;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=exon:HG003_chrY_T0000588:5;Name=LOC124905305;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19693818	19694470	.	-	.	source_transcript=hg002_chrY_paternal_418.1;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=HG003_chrY_T0000588;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000588;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=intron:HG003_chrY_T0000588:5;Name=LOC124905305;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19694471	19694633	.	-	.	source_transcript=hg002_chrY_paternal_418.1;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=HG003_chrY_T0000588;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000588;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=exon:HG003_chrY_T0000588:6;Name=LOC124905305;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19694634	19697034	.	-	.	source_transcript=hg002_chrY_paternal_418.1;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=HG003_chrY_T0000588;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000588;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=intron:HG003_chrY_T0000588:6;Name=LOC124905305;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19697035	19697111	.	-	.	source_transcript=hg002_chrY_paternal_418.1;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=HG003_chrY_T0000588;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000588;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=exon:HG003_chrY_T0000588:7;Name=LOC124905305;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19694444	19694605	.	-	.	source_gene_common_name=LOC124905307;source_gene=hg002_chrY_paternal_422;gene_id=HG003_chrY_G0000216;gene_biotype=snRNA;gene_name=LOC124905307;gene_sources=liftoff;ID=HG003_chrY_G0000216;Name=LOC124905307
HG003_chrY	CAT	transcript	19694444	19694605	1000	-	.	source_transcript=hg002_chrY_paternal_422.1;source_transcript_name=hg002_chrY_paternal_422.1;source_gene=hg002_chrY_paternal_422;source_gene_biotype=snRNA;original_gene_id=hg002_chrY_paternal_422;gene_biotype=snRNA;transcript_biotype=snRNA;alignment_id=hg002_chrY_paternal_422.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_422.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905307;transcript_id=HG003_chrY_T0000589;gene_id=HG003_chrY_G0000216;Parent=HG003_chrY_G0000216;transcript_name=hg002_chrY_paternal_422.1;gene_name=LOC124905307;ID=HG003_chrY_T0000589;Name=LOC124905307
HG003_chrY	CAT	exon	19694444	19694605	.	-	.	source_transcript=hg002_chrY_paternal_422.1;source_transcript_name=hg002_chrY_paternal_422.1;source_gene=hg002_chrY_paternal_422;source_gene_biotype=snRNA;original_gene_id=hg002_chrY_paternal_422;gene_biotype=snRNA;transcript_biotype=snRNA;alignment_id=hg002_chrY_paternal_422.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_422.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905307;transcript_id=HG003_chrY_T0000589;gene_id=HG003_chrY_G0000216;Parent=HG003_chrY_T0000589;transcript_name=hg002_chrY_paternal_422.1;gene_name=LOC124905307;ID=exon:HG003_chrY_T0000589:0;Name=LOC124905307;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19733215	19938276	.	-	.	source_gene_common_name=TTTY14;source_gene=hg002_chrY_paternal_425;alternative_source_transcripts=hg002_chrY_paternal_425.1,hg002_chrY_paternal_425.1;gene_id=HG003_chrY_G0000217;gene_biotype=lncRNA;gene_name=TTTY14;gene_sources=liftoff;ID=HG003_chrY_G0000217;Name=TTTY14
HG003_chrY	CAT	transcript	19733215	19936732	1000	-	.	source_transcript=hg002_chrY_paternal_425.1;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.1,hg002_chrY_paternal_425.1;transcript_id=HG003_chrY_T0000590;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_G0000217;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=HG003_chrY_T0000590;Name=TTTY14
HG003_chrY	CAT	exon	19733215	19733548	.	-	.	source_transcript=hg002_chrY_paternal_425.1;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.1,hg002_chrY_paternal_425.1;transcript_id=HG003_chrY_T0000590;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000590;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:HG003_chrY_T0000590:0;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19733549	19737781	.	-	.	source_transcript=hg002_chrY_paternal_425.1;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.1,hg002_chrY_paternal_425.1;transcript_id=HG003_chrY_T0000590;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000590;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=intron:HG003_chrY_T0000590:0;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19737782	19737919	.	-	.	source_transcript=hg002_chrY_paternal_425.1;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.1,hg002_chrY_paternal_425.1;transcript_id=HG003_chrY_T0000590;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000590;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:HG003_chrY_T0000590:1;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19737920	19773094	.	-	.	source_transcript=hg002_chrY_paternal_425.1;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.1,hg002_chrY_paternal_425.1;transcript_id=HG003_chrY_T0000590;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000590;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=intron:HG003_chrY_T0000590:1;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19773095	19773209	.	-	.	source_transcript=hg002_chrY_paternal_425.1;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.1,hg002_chrY_paternal_425.1;transcript_id=HG003_chrY_T0000590;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000590;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:HG003_chrY_T0000590:2;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19773210	19929452	.	-	.	source_transcript=hg002_chrY_paternal_425.1;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.1,hg002_chrY_paternal_425.1;transcript_id=HG003_chrY_T0000590;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000590;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=intron:HG003_chrY_T0000590:2;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19929453	19929527	.	-	.	source_transcript=hg002_chrY_paternal_425.1;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.1,hg002_chrY_paternal_425.1;transcript_id=HG003_chrY_T0000590;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000590;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:HG003_chrY_T0000590:3;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19929528	19936669	.	-	.	source_transcript=hg002_chrY_paternal_425.1;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.1,hg002_chrY_paternal_425.1;transcript_id=HG003_chrY_T0000590;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000590;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=intron:HG003_chrY_T0000590:3;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19936670	19936732	.	-	.	source_transcript=hg002_chrY_paternal_425.1;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.1,hg002_chrY_paternal_425.1;transcript_id=HG003_chrY_T0000590;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000590;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:HG003_chrY_T0000590:4;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19733215	19936758	1000	-	.	source_transcript=hg002_chrY_paternal_425.2;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.2,hg002_chrY_paternal_425.2;transcript_id=HG003_chrY_T0000591;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_G0000217;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=HG003_chrY_T0000591;Name=TTTY14
HG003_chrY	CAT	exon	19733215	19733548	.	-	.	source_transcript=hg002_chrY_paternal_425.2;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.2,hg002_chrY_paternal_425.2;transcript_id=HG003_chrY_T0000591;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000591;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:HG003_chrY_T0000591:0;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19733549	19737781	.	-	.	source_transcript=hg002_chrY_paternal_425.2;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.2,hg002_chrY_paternal_425.2;transcript_id=HG003_chrY_T0000591;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000591;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=intron:HG003_chrY_T0000591:0;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19737782	19737919	.	-	.	source_transcript=hg002_chrY_paternal_425.2;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.2,hg002_chrY_paternal_425.2;transcript_id=HG003_chrY_T0000591;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000591;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:HG003_chrY_T0000591:1;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19737920	19934227	.	-	.	source_transcript=hg002_chrY_paternal_425.2;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.2,hg002_chrY_paternal_425.2;transcript_id=HG003_chrY_T0000591;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000591;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=intron:HG003_chrY_T0000591:1;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19934228	19934290	.	-	.	source_transcript=hg002_chrY_paternal_425.2;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.2,hg002_chrY_paternal_425.2;transcript_id=HG003_chrY_T0000591;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000591;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:HG003_chrY_T0000591:2;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19934291	19936669	.	-	.	source_transcript=hg002_chrY_paternal_425.2;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.2,hg002_chrY_paternal_425.2;transcript_id=HG003_chrY_T0000591;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000591;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=intron:HG003_chrY_T0000591:2;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19936670	19936758	.	-	.	source_transcript=hg002_chrY_paternal_425.2;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.2,hg002_chrY_paternal_425.2;transcript_id=HG003_chrY_T0000591;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000591;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:HG003_chrY_T0000591:3;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19733215	19938276	1000	-	.	source_transcript=hg002_chrY_paternal_425.3;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.3,hg002_chrY_paternal_425.3;transcript_id=HG003_chrY_T0000592;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_G0000217;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=HG003_chrY_T0000592;Name=TTTY14
HG003_chrY	CAT	exon	19733215	19733548	.	-	.	source_transcript=hg002_chrY_paternal_425.3;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.3,hg002_chrY_paternal_425.3;transcript_id=HG003_chrY_T0000592;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000592;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:HG003_chrY_T0000592:0;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19733549	19793472	.	-	.	source_transcript=hg002_chrY_paternal_425.3;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.3,hg002_chrY_paternal_425.3;transcript_id=HG003_chrY_T0000592;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000592;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=intron:HG003_chrY_T0000592:0;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19793473	19793571	.	-	.	source_transcript=hg002_chrY_paternal_425.3;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.3,hg002_chrY_paternal_425.3;transcript_id=HG003_chrY_T0000592;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000592;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:HG003_chrY_T0000592:1;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19793572	19794086	.	-	.	source_transcript=hg002_chrY_paternal_425.3;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.3,hg002_chrY_paternal_425.3;transcript_id=HG003_chrY_T0000592;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000592;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=intron:HG003_chrY_T0000592:1;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19794087	19794205	.	-	.	source_transcript=hg002_chrY_paternal_425.3;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.3,hg002_chrY_paternal_425.3;transcript_id=HG003_chrY_T0000592;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000592;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:HG003_chrY_T0000592:2;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19794206	19929452	.	-	.	source_transcript=hg002_chrY_paternal_425.3;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.3,hg002_chrY_paternal_425.3;transcript_id=HG003_chrY_T0000592;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000592;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=intron:HG003_chrY_T0000592:2;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19929453	19929527	.	-	.	source_transcript=hg002_chrY_paternal_425.3;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.3,hg002_chrY_paternal_425.3;transcript_id=HG003_chrY_T0000592;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000592;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:HG003_chrY_T0000592:3;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19929528	19937773	.	-	.	source_transcript=hg002_chrY_paternal_425.3;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.3,hg002_chrY_paternal_425.3;transcript_id=HG003_chrY_T0000592;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000592;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=intron:HG003_chrY_T0000592:3;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19937774	19938276	.	-	.	source_transcript=hg002_chrY_paternal_425.3;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.3,hg002_chrY_paternal_425.3;transcript_id=HG003_chrY_T0000592;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000592;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:HG003_chrY_T0000592:4;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19733215	19938276	1000	-	.	source_transcript=hg002_chrY_paternal_425.4;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.4,hg002_chrY_paternal_425.4;transcript_id=HG003_chrY_T0000593;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_G0000217;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=HG003_chrY_T0000593;Name=TTTY14
HG003_chrY	CAT	exon	19733215	19733548	.	-	.	source_transcript=hg002_chrY_paternal_425.4;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.4,hg002_chrY_paternal_425.4;transcript_id=HG003_chrY_T0000593;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000593;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:HG003_chrY_T0000593:0;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19733549	19737781	.	-	.	source_transcript=hg002_chrY_paternal_425.4;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.4,hg002_chrY_paternal_425.4;transcript_id=HG003_chrY_T0000593;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000593;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=intron:HG003_chrY_T0000593:0;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19737782	19737919	.	-	.	source_transcript=hg002_chrY_paternal_425.4;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.4,hg002_chrY_paternal_425.4;transcript_id=HG003_chrY_T0000593;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000593;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:HG003_chrY_T0000593:1;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19737920	19929452	.	-	.	source_transcript=hg002_chrY_paternal_425.4;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.4,hg002_chrY_paternal_425.4;transcript_id=HG003_chrY_T0000593;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000593;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=intron:HG003_chrY_T0000593:1;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19929453	19929527	.	-	.	source_transcript=hg002_chrY_paternal_425.4;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.4,hg002_chrY_paternal_425.4;transcript_id=HG003_chrY_T0000593;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000593;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:HG003_chrY_T0000593:2;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19929528	19937773	.	-	.	source_transcript=hg002_chrY_paternal_425.4;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.4,hg002_chrY_paternal_425.4;transcript_id=HG003_chrY_T0000593;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000593;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=intron:HG003_chrY_T0000593:2;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19937774	19938276	.	-	.	source_transcript=hg002_chrY_paternal_425.4;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.4,hg002_chrY_paternal_425.4;transcript_id=HG003_chrY_T0000593;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000593;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:HG003_chrY_T0000593:3;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19733215	19938276	1000	-	.	source_transcript=hg002_chrY_paternal_425.5;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.5,hg002_chrY_paternal_425.5;transcript_id=HG003_chrY_T0000594;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_G0000217;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=HG003_chrY_T0000594;Name=TTTY14
HG003_chrY	CAT	exon	19733215	19733548	.	-	.	source_transcript=hg002_chrY_paternal_425.5;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.5,hg002_chrY_paternal_425.5;transcript_id=HG003_chrY_T0000594;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000594;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:HG003_chrY_T0000594:0;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19733549	19737781	.	-	.	source_transcript=hg002_chrY_paternal_425.5;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.5,hg002_chrY_paternal_425.5;transcript_id=HG003_chrY_T0000594;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000594;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=intron:HG003_chrY_T0000594:0;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19737782	19737919	.	-	.	source_transcript=hg002_chrY_paternal_425.5;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.5,hg002_chrY_paternal_425.5;transcript_id=HG003_chrY_T0000594;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000594;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:HG003_chrY_T0000594:1;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19737920	19937773	.	-	.	source_transcript=hg002_chrY_paternal_425.5;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.5,hg002_chrY_paternal_425.5;transcript_id=HG003_chrY_T0000594;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000594;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=intron:HG003_chrY_T0000594:1;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19937774	19938276	.	-	.	source_transcript=hg002_chrY_paternal_425.5;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.5,hg002_chrY_paternal_425.5;transcript_id=HG003_chrY_T0000594;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000594;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:HG003_chrY_T0000594:2;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19792737	19936758	1000	-	.	source_transcript=hg002_chrY_paternal_425.6;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.6;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.6,hg002_chrY_paternal_425.6;transcript_id=HG003_chrY_T0000595;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_G0000217;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=HG003_chrY_T0000595;Name=TTTY14
HG003_chrY	CAT	exon	19792737	19793571	.	-	.	source_transcript=hg002_chrY_paternal_425.6;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.6,hg002_chrY_paternal_425.6;transcript_id=HG003_chrY_T0000595;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000595;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:HG003_chrY_T0000595:0;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19793572	19905271	.	-	.	source_transcript=hg002_chrY_paternal_425.6;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.6,hg002_chrY_paternal_425.6;transcript_id=HG003_chrY_T0000595;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000595;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=intron:HG003_chrY_T0000595:0;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19905272	19905425	.	-	.	source_transcript=hg002_chrY_paternal_425.6;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.6,hg002_chrY_paternal_425.6;transcript_id=HG003_chrY_T0000595;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000595;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:HG003_chrY_T0000595:1;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19905426	19905971	.	-	.	source_transcript=hg002_chrY_paternal_425.6;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.6,hg002_chrY_paternal_425.6;transcript_id=HG003_chrY_T0000595;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000595;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=intron:HG003_chrY_T0000595:1;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19905972	19906021	.	-	.	source_transcript=hg002_chrY_paternal_425.6;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.6,hg002_chrY_paternal_425.6;transcript_id=HG003_chrY_T0000595;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000595;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:HG003_chrY_T0000595:2;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19906022	19929452	.	-	.	source_transcript=hg002_chrY_paternal_425.6;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.6,hg002_chrY_paternal_425.6;transcript_id=HG003_chrY_T0000595;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000595;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=intron:HG003_chrY_T0000595:2;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19929453	19929527	.	-	.	source_transcript=hg002_chrY_paternal_425.6;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.6,hg002_chrY_paternal_425.6;transcript_id=HG003_chrY_T0000595;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000595;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:HG003_chrY_T0000595:3;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19929528	19936669	.	-	.	source_transcript=hg002_chrY_paternal_425.6;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.6,hg002_chrY_paternal_425.6;transcript_id=HG003_chrY_T0000595;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000595;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=intron:HG003_chrY_T0000595:3;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19936670	19936758	.	-	.	source_transcript=hg002_chrY_paternal_425.6;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.6,hg002_chrY_paternal_425.6;transcript_id=HG003_chrY_T0000595;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000595;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:HG003_chrY_T0000595:4;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19793181	19936732	1000	-	.	source_transcript=hg002_chrY_paternal_425.7;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.7;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.7,hg002_chrY_paternal_425.7;transcript_id=HG003_chrY_T0000596;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_G0000217;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=HG003_chrY_T0000596;Name=TTTY14
HG003_chrY	CAT	exon	19793181	19793571	.	-	.	source_transcript=hg002_chrY_paternal_425.7;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.7,hg002_chrY_paternal_425.7;transcript_id=HG003_chrY_T0000596;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000596;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:HG003_chrY_T0000596:0;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19793572	19929452	.	-	.	source_transcript=hg002_chrY_paternal_425.7;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.7,hg002_chrY_paternal_425.7;transcript_id=HG003_chrY_T0000596;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000596;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=intron:HG003_chrY_T0000596:0;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19929453	19929527	.	-	.	source_transcript=hg002_chrY_paternal_425.7;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.7,hg002_chrY_paternal_425.7;transcript_id=HG003_chrY_T0000596;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000596;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:HG003_chrY_T0000596:1;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19929528	19936669	.	-	.	source_transcript=hg002_chrY_paternal_425.7;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.7,hg002_chrY_paternal_425.7;transcript_id=HG003_chrY_T0000596;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000596;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=intron:HG003_chrY_T0000596:1;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19936670	19936732	.	-	.	source_transcript=hg002_chrY_paternal_425.7;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.7,hg002_chrY_paternal_425.7;transcript_id=HG003_chrY_T0000596;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000596;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:HG003_chrY_T0000596:2;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19793181	19938276	1000	-	.	source_transcript=hg002_chrY_paternal_425.8;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.8;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.8,hg002_chrY_paternal_425.8;transcript_id=HG003_chrY_T0000597;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_G0000217;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=HG003_chrY_T0000597;Name=TTTY14
HG003_chrY	CAT	exon	19793181	19793571	.	-	.	source_transcript=hg002_chrY_paternal_425.8;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.8,hg002_chrY_paternal_425.8;transcript_id=HG003_chrY_T0000597;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000597;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:HG003_chrY_T0000597:0;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19793572	19937773	.	-	.	source_transcript=hg002_chrY_paternal_425.8;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.8,hg002_chrY_paternal_425.8;transcript_id=HG003_chrY_T0000597;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000597;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=intron:HG003_chrY_T0000597:0;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19937774	19938276	.	-	.	source_transcript=hg002_chrY_paternal_425.8;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.8,hg002_chrY_paternal_425.8;transcript_id=HG003_chrY_T0000597;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000597;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:HG003_chrY_T0000597:1;Name=TTTY14;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19940585	19949607	.	+	.	source_gene_common_name=LOC124905306;source_gene=hg002_chrY_paternal_429;alternative_source_transcripts=hg002_chrY_paternal_429.1,hg002_chrY_paternal_429.1;gene_id=HG003_chrY_G0000218;gene_biotype=lncRNA;gene_name=LOC124905306;gene_sources=liftoff;ID=HG003_chrY_G0000218;Name=LOC124905306
HG003_chrY	CAT	transcript	19940585	19949607	1000	+	.	source_transcript=hg002_chrY_paternal_429.1;source_transcript_name=hg002_chrY_paternal_429.1;source_gene=hg002_chrY_paternal_429;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_429;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_429.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_429.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905306;alternative_source_transcripts=hg002_chrY_paternal_429.1,hg002_chrY_paternal_429.1;transcript_id=HG003_chrY_T0000598;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_G0000218;transcript_name=hg002_chrY_paternal_429.1;gene_name=LOC124905306;ID=HG003_chrY_T0000598;Name=LOC124905306
HG003_chrY	CAT	exon	19940585	19941454	.	+	.	source_transcript=hg002_chrY_paternal_429.1;source_transcript_name=hg002_chrY_paternal_429.1;source_gene=hg002_chrY_paternal_429;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_429;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_429.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_429.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905306;alternative_source_transcripts=hg002_chrY_paternal_429.1,hg002_chrY_paternal_429.1;transcript_id=HG003_chrY_T0000598;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000598;transcript_name=hg002_chrY_paternal_429.1;gene_name=LOC124905306;ID=exon:HG003_chrY_T0000598:0;Name=LOC124905306;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19941455	19947228	.	+	.	source_transcript=hg002_chrY_paternal_429.1;source_transcript_name=hg002_chrY_paternal_429.1;source_gene=hg002_chrY_paternal_429;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_429;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_429.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_429.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905306;alternative_source_transcripts=hg002_chrY_paternal_429.1,hg002_chrY_paternal_429.1;transcript_id=HG003_chrY_T0000598;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000598;transcript_name=hg002_chrY_paternal_429.1;gene_name=LOC124905306;ID=intron:HG003_chrY_T0000598:0;Name=LOC124905306;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19947229	19949607	.	+	.	source_transcript=hg002_chrY_paternal_429.1;source_transcript_name=hg002_chrY_paternal_429.1;source_gene=hg002_chrY_paternal_429;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_429;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_429.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_429.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905306;alternative_source_transcripts=hg002_chrY_paternal_429.1,hg002_chrY_paternal_429.1;transcript_id=HG003_chrY_T0000598;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000598;transcript_name=hg002_chrY_paternal_429.1;gene_name=LOC124905306;ID=exon:HG003_chrY_T0000598:1;Name=LOC124905306;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	20316232	20363936	.	-	.	source_gene_common_name=BCORP1;source_gene=hg002_chrY_paternal_431;alternative_source_transcripts=hg002_chrY_paternal_431.1,hg002_chrY_paternal_431.1;gene_id=HG003_chrY_G0000219;gene_biotype=transcribed_pseudogene;gene_name=BCORP1;gene_sources=liftoff;ID=HG003_chrY_G0000219;Name=BCORP1
HG003_chrY	CAT	transcript	20316232	20363936	1000	-	.	source_transcript=hg002_chrY_paternal_431.1;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.1,hg002_chrY_paternal_431.1;transcript_id=HG003_chrY_T0000599;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_G0000219;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=HG003_chrY_T0000599;Name=BCORP1
HG003_chrY	CAT	exon	20316232	20317665	.	-	.	source_transcript=hg002_chrY_paternal_431.1;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.1,hg002_chrY_paternal_431.1;transcript_id=HG003_chrY_T0000599;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000599;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=exon:HG003_chrY_T0000599:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20317666	20319709	.	-	.	source_transcript=hg002_chrY_paternal_431.1;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.1,hg002_chrY_paternal_431.1;transcript_id=HG003_chrY_T0000599;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000599;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=intron:HG003_chrY_T0000599:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20319710	20319865	.	-	.	source_transcript=hg002_chrY_paternal_431.1;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.1,hg002_chrY_paternal_431.1;transcript_id=HG003_chrY_T0000599;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000599;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=exon:HG003_chrY_T0000599:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20319866	20320074	.	-	.	source_transcript=hg002_chrY_paternal_431.1;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.1,hg002_chrY_paternal_431.1;transcript_id=HG003_chrY_T0000599;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000599;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=intron:HG003_chrY_T0000599:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20320075	20320152	.	-	.	source_transcript=hg002_chrY_paternal_431.1;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.1,hg002_chrY_paternal_431.1;transcript_id=HG003_chrY_T0000599;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000599;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=exon:HG003_chrY_T0000599:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20320153	20325888	.	-	.	source_transcript=hg002_chrY_paternal_431.1;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.1,hg002_chrY_paternal_431.1;transcript_id=HG003_chrY_T0000599;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000599;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=intron:HG003_chrY_T0000599:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20325889	20326010	.	-	.	source_transcript=hg002_chrY_paternal_431.1;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.1,hg002_chrY_paternal_431.1;transcript_id=HG003_chrY_T0000599;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000599;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=exon:HG003_chrY_T0000599:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20326011	20327238	.	-	.	source_transcript=hg002_chrY_paternal_431.1;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.1,hg002_chrY_paternal_431.1;transcript_id=HG003_chrY_T0000599;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000599;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=intron:HG003_chrY_T0000599:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20327239	20328157	.	-	.	source_transcript=hg002_chrY_paternal_431.1;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.1,hg002_chrY_paternal_431.1;transcript_id=HG003_chrY_T0000599;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000599;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=exon:HG003_chrY_T0000599:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20328158	20334687	.	-	.	source_transcript=hg002_chrY_paternal_431.1;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.1,hg002_chrY_paternal_431.1;transcript_id=HG003_chrY_T0000599;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000599;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=intron:HG003_chrY_T0000599:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20334688	20334927	.	-	.	source_transcript=hg002_chrY_paternal_431.1;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.1,hg002_chrY_paternal_431.1;transcript_id=HG003_chrY_T0000599;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000599;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=exon:HG003_chrY_T0000599:5;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20334928	20335422	.	-	.	source_transcript=hg002_chrY_paternal_431.1;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.1,hg002_chrY_paternal_431.1;transcript_id=HG003_chrY_T0000599;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000599;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=intron:HG003_chrY_T0000599:5;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20335423	20335686	.	-	.	source_transcript=hg002_chrY_paternal_431.1;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.1,hg002_chrY_paternal_431.1;transcript_id=HG003_chrY_T0000599;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000599;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=exon:HG003_chrY_T0000599:6;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20335687	20340951	.	-	.	source_transcript=hg002_chrY_paternal_431.1;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.1,hg002_chrY_paternal_431.1;transcript_id=HG003_chrY_T0000599;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000599;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=intron:HG003_chrY_T0000599:6;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20340952	20341077	.	-	.	source_transcript=hg002_chrY_paternal_431.1;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.1,hg002_chrY_paternal_431.1;transcript_id=HG003_chrY_T0000599;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000599;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=exon:HG003_chrY_T0000599:7;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20341078	20363814	.	-	.	source_transcript=hg002_chrY_paternal_431.1;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.1,hg002_chrY_paternal_431.1;transcript_id=HG003_chrY_T0000599;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000599;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=intron:HG003_chrY_T0000599:7;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20363815	20363936	.	-	.	source_transcript=hg002_chrY_paternal_431.1;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.1,hg002_chrY_paternal_431.1;transcript_id=HG003_chrY_T0000599;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000599;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=exon:HG003_chrY_T0000599:8;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20316232	20363936	1000	-	.	source_transcript=hg002_chrY_paternal_431.2;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.2,hg002_chrY_paternal_431.2;transcript_id=HG003_chrY_T0000600;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_G0000219;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=HG003_chrY_T0000600;Name=BCORP1
HG003_chrY	CAT	exon	20316232	20317665	.	-	.	source_transcript=hg002_chrY_paternal_431.2;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.2,hg002_chrY_paternal_431.2;transcript_id=HG003_chrY_T0000600;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000600;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=exon:HG003_chrY_T0000600:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20317666	20317857	.	-	.	source_transcript=hg002_chrY_paternal_431.2;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.2,hg002_chrY_paternal_431.2;transcript_id=HG003_chrY_T0000600;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000600;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=intron:HG003_chrY_T0000600:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20317858	20317918	.	-	.	source_transcript=hg002_chrY_paternal_431.2;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.2,hg002_chrY_paternal_431.2;transcript_id=HG003_chrY_T0000600;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000600;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=exon:HG003_chrY_T0000600:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20317919	20319709	.	-	.	source_transcript=hg002_chrY_paternal_431.2;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.2,hg002_chrY_paternal_431.2;transcript_id=HG003_chrY_T0000600;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000600;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=intron:HG003_chrY_T0000600:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20319710	20319865	.	-	.	source_transcript=hg002_chrY_paternal_431.2;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.2,hg002_chrY_paternal_431.2;transcript_id=HG003_chrY_T0000600;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000600;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=exon:HG003_chrY_T0000600:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20319866	20320074	.	-	.	source_transcript=hg002_chrY_paternal_431.2;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.2,hg002_chrY_paternal_431.2;transcript_id=HG003_chrY_T0000600;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000600;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=intron:HG003_chrY_T0000600:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20320075	20320152	.	-	.	source_transcript=hg002_chrY_paternal_431.2;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.2,hg002_chrY_paternal_431.2;transcript_id=HG003_chrY_T0000600;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000600;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=exon:HG003_chrY_T0000600:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20320153	20320744	.	-	.	source_transcript=hg002_chrY_paternal_431.2;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.2,hg002_chrY_paternal_431.2;transcript_id=HG003_chrY_T0000600;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000600;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=intron:HG003_chrY_T0000600:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20320745	20320890	.	-	.	source_transcript=hg002_chrY_paternal_431.2;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.2,hg002_chrY_paternal_431.2;transcript_id=HG003_chrY_T0000600;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000600;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=exon:HG003_chrY_T0000600:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20320891	20325888	.	-	.	source_transcript=hg002_chrY_paternal_431.2;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.2,hg002_chrY_paternal_431.2;transcript_id=HG003_chrY_T0000600;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000600;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=intron:HG003_chrY_T0000600:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20325889	20326010	.	-	.	source_transcript=hg002_chrY_paternal_431.2;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.2,hg002_chrY_paternal_431.2;transcript_id=HG003_chrY_T0000600;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000600;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=exon:HG003_chrY_T0000600:5;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20326011	20327238	.	-	.	source_transcript=hg002_chrY_paternal_431.2;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.2,hg002_chrY_paternal_431.2;transcript_id=HG003_chrY_T0000600;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000600;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=intron:HG003_chrY_T0000600:5;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20327239	20328157	.	-	.	source_transcript=hg002_chrY_paternal_431.2;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.2,hg002_chrY_paternal_431.2;transcript_id=HG003_chrY_T0000600;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000600;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=exon:HG003_chrY_T0000600:6;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20328158	20334687	.	-	.	source_transcript=hg002_chrY_paternal_431.2;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.2,hg002_chrY_paternal_431.2;transcript_id=HG003_chrY_T0000600;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000600;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=intron:HG003_chrY_T0000600:6;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20334688	20334927	.	-	.	source_transcript=hg002_chrY_paternal_431.2;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.2,hg002_chrY_paternal_431.2;transcript_id=HG003_chrY_T0000600;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000600;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=exon:HG003_chrY_T0000600:7;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20334928	20335422	.	-	.	source_transcript=hg002_chrY_paternal_431.2;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.2,hg002_chrY_paternal_431.2;transcript_id=HG003_chrY_T0000600;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000600;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=intron:HG003_chrY_T0000600:7;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20335423	20335686	.	-	.	source_transcript=hg002_chrY_paternal_431.2;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.2,hg002_chrY_paternal_431.2;transcript_id=HG003_chrY_T0000600;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000600;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=exon:HG003_chrY_T0000600:8;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20335687	20340951	.	-	.	source_transcript=hg002_chrY_paternal_431.2;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.2,hg002_chrY_paternal_431.2;transcript_id=HG003_chrY_T0000600;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000600;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=intron:HG003_chrY_T0000600:8;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20340952	20341077	.	-	.	source_transcript=hg002_chrY_paternal_431.2;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.2,hg002_chrY_paternal_431.2;transcript_id=HG003_chrY_T0000600;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000600;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=exon:HG003_chrY_T0000600:9;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20341078	20363814	.	-	.	source_transcript=hg002_chrY_paternal_431.2;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.2,hg002_chrY_paternal_431.2;transcript_id=HG003_chrY_T0000600;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000600;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=intron:HG003_chrY_T0000600:9;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20363815	20363936	.	-	.	source_transcript=hg002_chrY_paternal_431.2;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.2,hg002_chrY_paternal_431.2;transcript_id=HG003_chrY_T0000600;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000600;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=exon:HG003_chrY_T0000600:10;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	20342399	20344238	.	-	.	source_gene_common_name=LOC102723934;source_gene=hg002_chrY_paternal_432;alternative_source_transcripts=hg002_chrY_paternal_432.1,hg002_chrY_paternal_432.1;gene_id=HG003_chrY_G0000220;gene_biotype=protein_coding;gene_name=LOC102723934;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000220;Name=LOC102723934
HG003_chrY	CAT	transcript	20342399	20344238	100	-	.	source_transcript=hg002_chrY_paternal_432.1;source_transcript_name=hg002_chrY_paternal_432.1;source_gene=hg002_chrY_paternal_432;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_432;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_432.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_432.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102723934;alternative_source_transcripts=hg002_chrY_paternal_432.1,hg002_chrY_paternal_432.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000601;gene_id=HG003_chrY_G0000220;Parent=HG003_chrY_G0000220;transcript_name=hg002_chrY_paternal_432.1;gene_name=LOC102723934;ID=HG003_chrY_T0000601;Name=LOC102723934
HG003_chrY	CAT	exon	20342399	20342787	.	-	.	source_transcript=hg002_chrY_paternal_432.1;source_transcript_name=hg002_chrY_paternal_432.1;source_gene=hg002_chrY_paternal_432;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_432;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_432.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_432.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102723934;alternative_source_transcripts=hg002_chrY_paternal_432.1,hg002_chrY_paternal_432.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000601;gene_id=HG003_chrY_G0000220;Parent=HG003_chrY_T0000601;transcript_name=hg002_chrY_paternal_432.1;gene_name=LOC102723934;ID=exon:HG003_chrY_T0000601:0;Name=LOC102723934;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20342399	20342787	.	-	2	source_transcript=hg002_chrY_paternal_432.1;source_transcript_name=hg002_chrY_paternal_432.1;source_gene=hg002_chrY_paternal_432;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_432;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_432.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_432.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102723934;alternative_source_transcripts=hg002_chrY_paternal_432.1,hg002_chrY_paternal_432.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000601;gene_id=HG003_chrY_G0000220;Parent=HG003_chrY_T0000601;transcript_name=hg002_chrY_paternal_432.1;gene_name=LOC102723934;ID=CDS:HG003_chrY_T0000601:0;Name=LOC102723934;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	20342399	20342401	.	-	0	source_transcript=hg002_chrY_paternal_432.1;source_transcript_name=hg002_chrY_paternal_432.1;source_gene=hg002_chrY_paternal_432;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_432;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_432.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_432.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102723934;alternative_source_transcripts=hg002_chrY_paternal_432.1,hg002_chrY_paternal_432.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000601;gene_id=HG003_chrY_G0000220;Parent=HG003_chrY_T0000601;transcript_name=hg002_chrY_paternal_432.1;gene_name=LOC102723934;ID=stop_codon:HG003_chrY_T0000601;Name=LOC102723934;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20342788	20343099	.	-	.	source_transcript=hg002_chrY_paternal_432.1;source_transcript_name=hg002_chrY_paternal_432.1;source_gene=hg002_chrY_paternal_432;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_432;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_432.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_432.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102723934;alternative_source_transcripts=hg002_chrY_paternal_432.1,hg002_chrY_paternal_432.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000601;gene_id=HG003_chrY_G0000220;Parent=HG003_chrY_T0000601;transcript_name=hg002_chrY_paternal_432.1;gene_name=LOC102723934;ID=intron:HG003_chrY_T0000601:0;Name=LOC102723934;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20343100	20343111	.	-	.	source_transcript=hg002_chrY_paternal_432.1;source_transcript_name=hg002_chrY_paternal_432.1;source_gene=hg002_chrY_paternal_432;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_432;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_432.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_432.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102723934;alternative_source_transcripts=hg002_chrY_paternal_432.1,hg002_chrY_paternal_432.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000601;gene_id=HG003_chrY_G0000220;Parent=HG003_chrY_T0000601;transcript_name=hg002_chrY_paternal_432.1;gene_name=LOC102723934;ID=exon:HG003_chrY_T0000601:1;Name=LOC102723934;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20343100	20343111	.	-	2	source_transcript=hg002_chrY_paternal_432.1;source_transcript_name=hg002_chrY_paternal_432.1;source_gene=hg002_chrY_paternal_432;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_432;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_432.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_432.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102723934;alternative_source_transcripts=hg002_chrY_paternal_432.1,hg002_chrY_paternal_432.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000601;gene_id=HG003_chrY_G0000220;Parent=HG003_chrY_T0000601;transcript_name=hg002_chrY_paternal_432.1;gene_name=LOC102723934;ID=CDS:HG003_chrY_T0000601:1;Name=LOC102723934;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20343112	20343191	.	-	.	source_transcript=hg002_chrY_paternal_432.1;source_transcript_name=hg002_chrY_paternal_432.1;source_gene=hg002_chrY_paternal_432;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_432;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_432.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_432.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102723934;alternative_source_transcripts=hg002_chrY_paternal_432.1,hg002_chrY_paternal_432.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000601;gene_id=HG003_chrY_G0000220;Parent=HG003_chrY_T0000601;transcript_name=hg002_chrY_paternal_432.1;gene_name=LOC102723934;ID=intron:HG003_chrY_T0000601:1;Name=LOC102723934;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20343192	20344238	.	-	.	source_transcript=hg002_chrY_paternal_432.1;source_transcript_name=hg002_chrY_paternal_432.1;source_gene=hg002_chrY_paternal_432;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_432;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_432.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_432.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102723934;alternative_source_transcripts=hg002_chrY_paternal_432.1,hg002_chrY_paternal_432.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000601;gene_id=HG003_chrY_G0000220;Parent=HG003_chrY_T0000601;transcript_name=hg002_chrY_paternal_432.1;gene_name=LOC102723934;ID=exon:HG003_chrY_T0000601:2;Name=LOC102723934;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20343192	20344215	.	-	0	source_transcript=hg002_chrY_paternal_432.1;source_transcript_name=hg002_chrY_paternal_432.1;source_gene=hg002_chrY_paternal_432;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_432;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_432.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_432.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102723934;alternative_source_transcripts=hg002_chrY_paternal_432.1,hg002_chrY_paternal_432.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000601;gene_id=HG003_chrY_G0000220;Parent=HG003_chrY_T0000601;transcript_name=hg002_chrY_paternal_432.1;gene_name=LOC102723934;ID=CDS:HG003_chrY_T0000601:2;Name=LOC102723934;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	20344213	20344215	.	-	0	source_transcript=hg002_chrY_paternal_432.1;source_transcript_name=hg002_chrY_paternal_432.1;source_gene=hg002_chrY_paternal_432;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_432;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_432.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_432.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102723934;alternative_source_transcripts=hg002_chrY_paternal_432.1,hg002_chrY_paternal_432.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000601;gene_id=HG003_chrY_G0000220;Parent=HG003_chrY_T0000601;transcript_name=hg002_chrY_paternal_432.1;gene_name=LOC102723934;ID=start_codon:HG003_chrY_T0000601;Name=LOC102723934;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	20414676	20427786	.	-	.	source_gene_common_name=LOC105377223;source_gene=hg002_chrY_paternal_433;alternative_source_transcripts=hg002_chrY_paternal_433.1,hg002_chrY_paternal_433.1;gene_id=HG003_chrY_G0000221;gene_biotype=lncRNA;gene_name=LOC105377223;gene_sources=liftoff;ID=HG003_chrY_G0000221;Name=LOC105377223
HG003_chrY	CAT	transcript	20414676	20427786	1000	-	.	source_transcript=hg002_chrY_paternal_433.1;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.1,hg002_chrY_paternal_433.1;transcript_id=HG003_chrY_T0000602;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_G0000221;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=HG003_chrY_T0000602;Name=LOC105377223
HG003_chrY	CAT	exon	20414676	20417589	.	-	.	source_transcript=hg002_chrY_paternal_433.1;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.1,hg002_chrY_paternal_433.1;transcript_id=HG003_chrY_T0000602;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000602;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:HG003_chrY_T0000602:0;Name=LOC105377223;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20417590	20418006	.	-	.	source_transcript=hg002_chrY_paternal_433.1;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.1,hg002_chrY_paternal_433.1;transcript_id=HG003_chrY_T0000602;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000602;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=intron:HG003_chrY_T0000602:0;Name=LOC105377223;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418007	20418066	.	-	.	source_transcript=hg002_chrY_paternal_433.1;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.1,hg002_chrY_paternal_433.1;transcript_id=HG003_chrY_T0000602;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000602;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:HG003_chrY_T0000602:1;Name=LOC105377223;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418067	20418800	.	-	.	source_transcript=hg002_chrY_paternal_433.1;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.1,hg002_chrY_paternal_433.1;transcript_id=HG003_chrY_T0000602;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000602;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=intron:HG003_chrY_T0000602:1;Name=LOC105377223;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418801	20418917	.	-	.	source_transcript=hg002_chrY_paternal_433.1;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.1,hg002_chrY_paternal_433.1;transcript_id=HG003_chrY_T0000602;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000602;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:HG003_chrY_T0000602:2;Name=LOC105377223;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20427758	.	-	.	source_transcript=hg002_chrY_paternal_433.1;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.1,hg002_chrY_paternal_433.1;transcript_id=HG003_chrY_T0000602;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000602;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=intron:HG003_chrY_T0000602:2;Name=LOC105377223;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20427786	.	-	.	source_transcript=hg002_chrY_paternal_433.1;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.1,hg002_chrY_paternal_433.1;transcript_id=HG003_chrY_T0000602;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000602;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:HG003_chrY_T0000602:3;Name=LOC105377223;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20414676	20427786	1000	-	.	source_transcript=hg002_chrY_paternal_433.2;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.2,hg002_chrY_paternal_433.2;transcript_id=HG003_chrY_T0000603;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_G0000221;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=HG003_chrY_T0000603;Name=LOC105377223
HG003_chrY	CAT	exon	20414676	20417589	.	-	.	source_transcript=hg002_chrY_paternal_433.2;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.2,hg002_chrY_paternal_433.2;transcript_id=HG003_chrY_T0000603;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000603;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:HG003_chrY_T0000603:0;Name=LOC105377223;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20417590	20418006	.	-	.	source_transcript=hg002_chrY_paternal_433.2;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.2,hg002_chrY_paternal_433.2;transcript_id=HG003_chrY_T0000603;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000603;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=intron:HG003_chrY_T0000603:0;Name=LOC105377223;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418007	20418066	.	-	.	source_transcript=hg002_chrY_paternal_433.2;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.2,hg002_chrY_paternal_433.2;transcript_id=HG003_chrY_T0000603;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000603;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:HG003_chrY_T0000603:1;Name=LOC105377223;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418067	20418816	.	-	.	source_transcript=hg002_chrY_paternal_433.2;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.2,hg002_chrY_paternal_433.2;transcript_id=HG003_chrY_T0000603;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000603;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=intron:HG003_chrY_T0000603:1;Name=LOC105377223;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418817	20418917	.	-	.	source_transcript=hg002_chrY_paternal_433.2;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.2,hg002_chrY_paternal_433.2;transcript_id=HG003_chrY_T0000603;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000603;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:HG003_chrY_T0000603:2;Name=LOC105377223;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20427758	.	-	.	source_transcript=hg002_chrY_paternal_433.2;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.2,hg002_chrY_paternal_433.2;transcript_id=HG003_chrY_T0000603;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000603;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=intron:HG003_chrY_T0000603:2;Name=LOC105377223;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20427786	.	-	.	source_transcript=hg002_chrY_paternal_433.2;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.2,hg002_chrY_paternal_433.2;transcript_id=HG003_chrY_T0000603;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000603;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:HG003_chrY_T0000603:3;Name=LOC105377223;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20414676	20427786	1000	-	.	source_transcript=hg002_chrY_paternal_433.3;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.3,hg002_chrY_paternal_433.3;transcript_id=HG003_chrY_T0000604;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_G0000221;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=HG003_chrY_T0000604;Name=LOC105377223
HG003_chrY	CAT	exon	20414676	20417589	.	-	.	source_transcript=hg002_chrY_paternal_433.3;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.3,hg002_chrY_paternal_433.3;transcript_id=HG003_chrY_T0000604;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000604;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:HG003_chrY_T0000604:0;Name=LOC105377223;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20417590	20418006	.	-	.	source_transcript=hg002_chrY_paternal_433.3;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.3,hg002_chrY_paternal_433.3;transcript_id=HG003_chrY_T0000604;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000604;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=intron:HG003_chrY_T0000604:0;Name=LOC105377223;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418007	20418066	.	-	.	source_transcript=hg002_chrY_paternal_433.3;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.3,hg002_chrY_paternal_433.3;transcript_id=HG003_chrY_T0000604;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000604;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:HG003_chrY_T0000604:1;Name=LOC105377223;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418067	20418800	.	-	.	source_transcript=hg002_chrY_paternal_433.3;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.3,hg002_chrY_paternal_433.3;transcript_id=HG003_chrY_T0000604;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000604;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=intron:HG003_chrY_T0000604:1;Name=LOC105377223;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418801	20418917	.	-	.	source_transcript=hg002_chrY_paternal_433.3;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.3,hg002_chrY_paternal_433.3;transcript_id=HG003_chrY_T0000604;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000604;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:HG003_chrY_T0000604:2;Name=LOC105377223;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20420116	.	-	.	source_transcript=hg002_chrY_paternal_433.3;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.3,hg002_chrY_paternal_433.3;transcript_id=HG003_chrY_T0000604;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000604;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=intron:HG003_chrY_T0000604:2;Name=LOC105377223;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20420117	20427786	.	-	.	source_transcript=hg002_chrY_paternal_433.3;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.3,hg002_chrY_paternal_433.3;transcript_id=HG003_chrY_T0000604;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000604;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:HG003_chrY_T0000604:3;Name=LOC105377223;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20414676	20427786	1000	-	.	source_transcript=hg002_chrY_paternal_433.4;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.4,hg002_chrY_paternal_433.4;transcript_id=HG003_chrY_T0000605;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_G0000221;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=HG003_chrY_T0000605;Name=LOC105377223
HG003_chrY	CAT	exon	20414676	20416331	.	-	.	source_transcript=hg002_chrY_paternal_433.4;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.4,hg002_chrY_paternal_433.4;transcript_id=HG003_chrY_T0000605;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000605;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:HG003_chrY_T0000605:0;Name=LOC105377223;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20418006	.	-	.	source_transcript=hg002_chrY_paternal_433.4;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.4,hg002_chrY_paternal_433.4;transcript_id=HG003_chrY_T0000605;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000605;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=intron:HG003_chrY_T0000605:0;Name=LOC105377223;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418007	20418066	.	-	.	source_transcript=hg002_chrY_paternal_433.4;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.4,hg002_chrY_paternal_433.4;transcript_id=HG003_chrY_T0000605;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000605;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:HG003_chrY_T0000605:1;Name=LOC105377223;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418067	20418816	.	-	.	source_transcript=hg002_chrY_paternal_433.4;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.4,hg002_chrY_paternal_433.4;transcript_id=HG003_chrY_T0000605;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000605;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=intron:HG003_chrY_T0000605:1;Name=LOC105377223;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418817	20418917	.	-	.	source_transcript=hg002_chrY_paternal_433.4;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.4,hg002_chrY_paternal_433.4;transcript_id=HG003_chrY_T0000605;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000605;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:HG003_chrY_T0000605:2;Name=LOC105377223;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20420116	.	-	.	source_transcript=hg002_chrY_paternal_433.4;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.4,hg002_chrY_paternal_433.4;transcript_id=HG003_chrY_T0000605;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000605;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=intron:HG003_chrY_T0000605:2;Name=LOC105377223;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20420117	20427786	.	-	.	source_transcript=hg002_chrY_paternal_433.4;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.4,hg002_chrY_paternal_433.4;transcript_id=HG003_chrY_T0000605;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000605;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:HG003_chrY_T0000605:3;Name=LOC105377223;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20414676	20427786	1000	-	.	source_transcript=hg002_chrY_paternal_433.5;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.5,hg002_chrY_paternal_433.5;transcript_id=HG003_chrY_T0000606;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_G0000221;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=HG003_chrY_T0000606;Name=LOC105377223
HG003_chrY	CAT	exon	20414676	20416331	.	-	.	source_transcript=hg002_chrY_paternal_433.5;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.5,hg002_chrY_paternal_433.5;transcript_id=HG003_chrY_T0000606;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000606;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:HG003_chrY_T0000606:0;Name=LOC105377223;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20418006	.	-	.	source_transcript=hg002_chrY_paternal_433.5;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.5,hg002_chrY_paternal_433.5;transcript_id=HG003_chrY_T0000606;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000606;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=intron:HG003_chrY_T0000606:0;Name=LOC105377223;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418007	20418066	.	-	.	source_transcript=hg002_chrY_paternal_433.5;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.5,hg002_chrY_paternal_433.5;transcript_id=HG003_chrY_T0000606;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000606;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:HG003_chrY_T0000606:1;Name=LOC105377223;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418067	20418800	.	-	.	source_transcript=hg002_chrY_paternal_433.5;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.5,hg002_chrY_paternal_433.5;transcript_id=HG003_chrY_T0000606;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000606;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=intron:HG003_chrY_T0000606:1;Name=LOC105377223;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418801	20418917	.	-	.	source_transcript=hg002_chrY_paternal_433.5;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.5,hg002_chrY_paternal_433.5;transcript_id=HG003_chrY_T0000606;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000606;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:HG003_chrY_T0000606:2;Name=LOC105377223;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20427758	.	-	.	source_transcript=hg002_chrY_paternal_433.5;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.5,hg002_chrY_paternal_433.5;transcript_id=HG003_chrY_T0000606;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000606;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=intron:HG003_chrY_T0000606:2;Name=LOC105377223;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20427786	.	-	.	source_transcript=hg002_chrY_paternal_433.5;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.5,hg002_chrY_paternal_433.5;transcript_id=HG003_chrY_T0000606;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000606;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:HG003_chrY_T0000606:3;Name=LOC105377223;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20414676	20427786	1000	-	.	source_transcript=hg002_chrY_paternal_433.6;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.6;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.6,hg002_chrY_paternal_433.6;transcript_id=HG003_chrY_T0000607;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_G0000221;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=HG003_chrY_T0000607;Name=LOC105377223
HG003_chrY	CAT	exon	20414676	20418066	.	-	.	source_transcript=hg002_chrY_paternal_433.6;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.6,hg002_chrY_paternal_433.6;transcript_id=HG003_chrY_T0000607;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000607;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:HG003_chrY_T0000607:0;Name=LOC105377223;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418067	20418800	.	-	.	source_transcript=hg002_chrY_paternal_433.6;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.6,hg002_chrY_paternal_433.6;transcript_id=HG003_chrY_T0000607;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000607;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=intron:HG003_chrY_T0000607:0;Name=LOC105377223;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418801	20418917	.	-	.	source_transcript=hg002_chrY_paternal_433.6;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.6,hg002_chrY_paternal_433.6;transcript_id=HG003_chrY_T0000607;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000607;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:HG003_chrY_T0000607:1;Name=LOC105377223;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20420116	.	-	.	source_transcript=hg002_chrY_paternal_433.6;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.6,hg002_chrY_paternal_433.6;transcript_id=HG003_chrY_T0000607;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000607;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=intron:HG003_chrY_T0000607:1;Name=LOC105377223;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20420117	20427786	.	-	.	source_transcript=hg002_chrY_paternal_433.6;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.6,hg002_chrY_paternal_433.6;transcript_id=HG003_chrY_T0000607;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000607;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:HG003_chrY_T0000607:2;Name=LOC105377223;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20414676	20427786	1000	-	.	source_transcript=hg002_chrY_paternal_433.7;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.7;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.7,hg002_chrY_paternal_433.7;transcript_id=HG003_chrY_T0000608;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_G0000221;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=HG003_chrY_T0000608;Name=LOC105377223
HG003_chrY	CAT	exon	20414676	20418066	.	-	.	source_transcript=hg002_chrY_paternal_433.7;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.7,hg002_chrY_paternal_433.7;transcript_id=HG003_chrY_T0000608;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000608;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:HG003_chrY_T0000608:0;Name=LOC105377223;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418067	20418800	.	-	.	source_transcript=hg002_chrY_paternal_433.7;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.7,hg002_chrY_paternal_433.7;transcript_id=HG003_chrY_T0000608;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000608;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=intron:HG003_chrY_T0000608:0;Name=LOC105377223;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418801	20418917	.	-	.	source_transcript=hg002_chrY_paternal_433.7;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.7,hg002_chrY_paternal_433.7;transcript_id=HG003_chrY_T0000608;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000608;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:HG003_chrY_T0000608:1;Name=LOC105377223;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20427758	.	-	.	source_transcript=hg002_chrY_paternal_433.7;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.7,hg002_chrY_paternal_433.7;transcript_id=HG003_chrY_T0000608;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000608;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=intron:HG003_chrY_T0000608:1;Name=LOC105377223;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20427786	.	-	.	source_transcript=hg002_chrY_paternal_433.7;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.7,hg002_chrY_paternal_433.7;transcript_id=HG003_chrY_T0000608;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000608;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:HG003_chrY_T0000608:2;Name=LOC105377223;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	20428135	20467949	.	+	.	source_gene_common_name=TXLNGY;source_gene=hg002_chrY_paternal_434;alternative_source_transcripts=hg002_chrY_paternal_434.1,hg002_chrY_paternal_434.1;gene_id=HG003_chrY_G0000222;gene_biotype=transcribed_pseudogene;gene_name=TXLNGY;gene_sources=liftoff;ID=HG003_chrY_G0000222;Name=TXLNGY
HG003_chrY	CAT	transcript	20428135	20451200	1000	+	.	source_transcript=hg002_chrY_paternal_434.1;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.1,hg002_chrY_paternal_434.1;transcript_id=HG003_chrY_T0000609;gene_id=HG003_chrY_G0000222;Parent=HG003_chrY_G0000222;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=HG003_chrY_T0000609;Name=TXLNGY
HG003_chrY	CAT	exon	20428135	20428259	.	+	.	source_transcript=hg002_chrY_paternal_434.1;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.1,hg002_chrY_paternal_434.1;transcript_id=HG003_chrY_T0000609;gene_id=HG003_chrY_G0000222;Parent=HG003_chrY_T0000609;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=exon:HG003_chrY_T0000609:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20428260	20447986	.	+	.	source_transcript=hg002_chrY_paternal_434.1;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.1,hg002_chrY_paternal_434.1;transcript_id=HG003_chrY_T0000609;gene_id=HG003_chrY_G0000222;Parent=HG003_chrY_T0000609;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=intron:HG003_chrY_T0000609:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20447987	20448284	.	+	.	source_transcript=hg002_chrY_paternal_434.1;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.1,hg002_chrY_paternal_434.1;transcript_id=HG003_chrY_T0000609;gene_id=HG003_chrY_G0000222;Parent=HG003_chrY_T0000609;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=exon:HG003_chrY_T0000609:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20448285	20450297	.	+	.	source_transcript=hg002_chrY_paternal_434.1;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.1,hg002_chrY_paternal_434.1;transcript_id=HG003_chrY_T0000609;gene_id=HG003_chrY_G0000222;Parent=HG003_chrY_T0000609;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=intron:HG003_chrY_T0000609:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20450298	20450389	.	+	.	source_transcript=hg002_chrY_paternal_434.1;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.1,hg002_chrY_paternal_434.1;transcript_id=HG003_chrY_T0000609;gene_id=HG003_chrY_G0000222;Parent=HG003_chrY_T0000609;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=exon:HG003_chrY_T0000609:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20450390	20450859	.	+	.	source_transcript=hg002_chrY_paternal_434.1;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.1,hg002_chrY_paternal_434.1;transcript_id=HG003_chrY_T0000609;gene_id=HG003_chrY_G0000222;Parent=HG003_chrY_T0000609;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=intron:HG003_chrY_T0000609:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20450860	20451200	.	+	.	source_transcript=hg002_chrY_paternal_434.1;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.1,hg002_chrY_paternal_434.1;transcript_id=HG003_chrY_T0000609;gene_id=HG003_chrY_G0000222;Parent=HG003_chrY_T0000609;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=exon:HG003_chrY_T0000609:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20428135	20467949	1000	+	.	source_transcript=hg002_chrY_paternal_434.2;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.2,hg002_chrY_paternal_434.2;transcript_id=HG003_chrY_T0000610;gene_id=HG003_chrY_G0000222;Parent=HG003_chrY_G0000222;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=HG003_chrY_T0000610;Name=TXLNGY
HG003_chrY	CAT	exon	20428135	20428259	.	+	.	source_transcript=hg002_chrY_paternal_434.2;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.2,hg002_chrY_paternal_434.2;transcript_id=HG003_chrY_T0000610;gene_id=HG003_chrY_G0000222;Parent=HG003_chrY_T0000610;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=exon:HG003_chrY_T0000610:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20428260	20447986	.	+	.	source_transcript=hg002_chrY_paternal_434.2;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.2,hg002_chrY_paternal_434.2;transcript_id=HG003_chrY_T0000610;gene_id=HG003_chrY_G0000222;Parent=HG003_chrY_T0000610;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=intron:HG003_chrY_T0000610:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20447987	20448284	.	+	.	source_transcript=hg002_chrY_paternal_434.2;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.2,hg002_chrY_paternal_434.2;transcript_id=HG003_chrY_T0000610;gene_id=HG003_chrY_G0000222;Parent=HG003_chrY_T0000610;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=exon:HG003_chrY_T0000610:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20448285	20450297	.	+	.	source_transcript=hg002_chrY_paternal_434.2;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.2,hg002_chrY_paternal_434.2;transcript_id=HG003_chrY_T0000610;gene_id=HG003_chrY_G0000222;Parent=HG003_chrY_T0000610;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=intron:HG003_chrY_T0000610:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20450298	20450389	.	+	.	source_transcript=hg002_chrY_paternal_434.2;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.2,hg002_chrY_paternal_434.2;transcript_id=HG003_chrY_T0000610;gene_id=HG003_chrY_G0000222;Parent=HG003_chrY_T0000610;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=exon:HG003_chrY_T0000610:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20450390	20452556	.	+	.	source_transcript=hg002_chrY_paternal_434.2;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.2,hg002_chrY_paternal_434.2;transcript_id=HG003_chrY_T0000610;gene_id=HG003_chrY_G0000222;Parent=HG003_chrY_T0000610;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=intron:HG003_chrY_T0000610:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20452557	20452736	.	+	.	source_transcript=hg002_chrY_paternal_434.2;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.2,hg002_chrY_paternal_434.2;transcript_id=HG003_chrY_T0000610;gene_id=HG003_chrY_G0000222;Parent=HG003_chrY_T0000610;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=exon:HG003_chrY_T0000610:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20452737	20454175	.	+	.	source_transcript=hg002_chrY_paternal_434.2;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.2,hg002_chrY_paternal_434.2;transcript_id=HG003_chrY_T0000610;gene_id=HG003_chrY_G0000222;Parent=HG003_chrY_T0000610;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=intron:HG003_chrY_T0000610:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20454176	20454370	.	+	.	source_transcript=hg002_chrY_paternal_434.2;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.2,hg002_chrY_paternal_434.2;transcript_id=HG003_chrY_T0000610;gene_id=HG003_chrY_G0000222;Parent=HG003_chrY_T0000610;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=exon:HG003_chrY_T0000610:4;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20454371	20456791	.	+	.	source_transcript=hg002_chrY_paternal_434.2;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.2,hg002_chrY_paternal_434.2;transcript_id=HG003_chrY_T0000610;gene_id=HG003_chrY_G0000222;Parent=HG003_chrY_T0000610;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=intron:HG003_chrY_T0000610:4;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20456792	20456911	.	+	.	source_transcript=hg002_chrY_paternal_434.2;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.2,hg002_chrY_paternal_434.2;transcript_id=HG003_chrY_T0000610;gene_id=HG003_chrY_G0000222;Parent=HG003_chrY_T0000610;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=exon:HG003_chrY_T0000610:5;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20456912	20458371	.	+	.	source_transcript=hg002_chrY_paternal_434.2;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.2,hg002_chrY_paternal_434.2;transcript_id=HG003_chrY_T0000610;gene_id=HG003_chrY_G0000222;Parent=HG003_chrY_T0000610;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=intron:HG003_chrY_T0000610:5;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20458372	20458446	.	+	.	source_transcript=hg002_chrY_paternal_434.2;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.2,hg002_chrY_paternal_434.2;transcript_id=HG003_chrY_T0000610;gene_id=HG003_chrY_G0000222;Parent=HG003_chrY_T0000610;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=exon:HG003_chrY_T0000610:6;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20458447	20460519	.	+	.	source_transcript=hg002_chrY_paternal_434.2;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.2,hg002_chrY_paternal_434.2;transcript_id=HG003_chrY_T0000610;gene_id=HG003_chrY_G0000222;Parent=HG003_chrY_T0000610;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=intron:HG003_chrY_T0000610:6;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20460520	20460612	.	+	.	source_transcript=hg002_chrY_paternal_434.2;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.2,hg002_chrY_paternal_434.2;transcript_id=HG003_chrY_T0000610;gene_id=HG003_chrY_G0000222;Parent=HG003_chrY_T0000610;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=exon:HG003_chrY_T0000610:7;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20460613	20462996	.	+	.	source_transcript=hg002_chrY_paternal_434.2;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.2,hg002_chrY_paternal_434.2;transcript_id=HG003_chrY_T0000610;gene_id=HG003_chrY_G0000222;Parent=HG003_chrY_T0000610;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=intron:HG003_chrY_T0000610:7;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20462997	20463092	.	+	.	source_transcript=hg002_chrY_paternal_434.2;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.2,hg002_chrY_paternal_434.2;transcript_id=HG003_chrY_T0000610;gene_id=HG003_chrY_G0000222;Parent=HG003_chrY_T0000610;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=exon:HG003_chrY_T0000610:8;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20463093	20464577	.	+	.	source_transcript=hg002_chrY_paternal_434.2;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.2,hg002_chrY_paternal_434.2;transcript_id=HG003_chrY_T0000610;gene_id=HG003_chrY_G0000222;Parent=HG003_chrY_T0000610;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=intron:HG003_chrY_T0000610:8;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20464578	20467949	.	+	.	source_transcript=hg002_chrY_paternal_434.2;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.2,hg002_chrY_paternal_434.2;transcript_id=HG003_chrY_T0000610;gene_id=HG003_chrY_G0000222;Parent=HG003_chrY_T0000610;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=exon:HG003_chrY_T0000610:9;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	20564630	20605491	.	-	.	source_gene_common_name=KDM5D;source_gene=hg002_chrY_paternal_435;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;gene_id=HG003_chrY_G0000223;gene_biotype=protein_coding;gene_name=KDM5D;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000223;Name=KDM5D
HG003_chrY	CAT	transcript	20564630	20605491	100	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_G0000223;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=HG003_chrY_T0000611;Name=KDM5D
HG003_chrY	CAT	exon	20564630	20567110	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000611:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20566760	20567110	.	-	0	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000611:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	20566760	20566762	.	-	0	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=stop_codon:HG003_chrY_T0000611;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567111	20567205	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000611:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567206	20567405	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000611:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20567206	20567405	.	-	2	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000611:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567406	20567558	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000611:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567559	20567628	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000611:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20567559	20567628	.	-	0	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000611:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567629	20567911	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000611:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567912	20568511	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000611:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20567912	20568511	.	-	0	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000611:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20568512	20568698	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000611:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20568699	20568836	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000611:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20568699	20568836	.	-	0	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000611:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20568837	20569008	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000611:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20569009	20569188	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000611:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20569009	20569188	.	-	0	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000611:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20569189	20569639	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000611:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20569640	20569778	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000611:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20569640	20569778	.	-	1	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000611:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20569779	20570215	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000611:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20570216	20570574	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000611:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20570216	20570574	.	-	0	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000611:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20570575	20571140	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000611:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20571141	20571237	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000611:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20571141	20571237	.	-	1	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000611:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20571238	20576116	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000611:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576117	20576264	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000611:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576117	20576264	.	-	2	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000611:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576265	20576379	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000611:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576380	20576504	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000611:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576380	20576504	.	-	1	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000611:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576505	20576587	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000611:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576588	20576769	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000611:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576588	20576769	.	-	0	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000611:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576770	20577043	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000611:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20577044	20577238	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000611:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20577044	20577238	.	-	0	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000611:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20577239	20577360	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000611:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20577361	20577480	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000611:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20577361	20577480	.	-	0	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000611:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20577481	20581636	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000611:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20581637	20581799	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000611:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20581637	20581799	.	-	1	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000611:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20581800	20581894	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000611:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20581895	20582076	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000611:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20581895	20582076	.	-	0	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000611:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20582077	20584105	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000611:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20584106	20584198	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000611:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20584106	20584198	.	-	0	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000611:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20584199	20592536	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000611:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20592537	20592695	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000611:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20592537	20592695	.	-	0	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000611:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20592696	20592810	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000611:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20592811	20592930	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000611:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20592811	20592930	.	-	0	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000611:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20592931	20593348	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000611:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20593349	20593507	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000611:19;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20593349	20593507	.	-	0	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000611:19;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20593508	20596116	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000611:19;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20596117	20596262	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000611:20;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20596117	20596262	.	-	2	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000611:20;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20596263	20596385	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000611:20;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20596386	20596515	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000611:21;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20596386	20596515	.	-	0	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000611:21;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20596516	20600292	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000611:21;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20600293	20600427	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000611:22;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20600293	20600427	.	-	0	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000611:22;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20600428	20602082	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000611:22;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20602083	20602253	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000611:23;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20602083	20602253	.	-	0	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000611:23;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20602254	20602499	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000611:23;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20602500	20602622	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000611:24;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20602500	20602622	.	-	0	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000611:24;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20602623	20603926	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000611:24;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20603927	20604004	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000611:25;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20603927	20604004	.	-	0	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000611:25;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20604005	20605149	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000611:25;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20605150	20605318	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000611:26;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20605150	20605299	.	-	0	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000611:26;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	20605297	20605299	.	-	0	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=start_codon:HG003_chrY_T0000611;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20605319	20605435	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000611:26;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20605436	20605491	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000611;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000611:27;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20564630	20605491	100	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_G0000223;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=HG003_chrY_T0000612;Name=KDM5D
HG003_chrY	CAT	exon	20564630	20567110	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000612:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20566760	20567110	.	-	0	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000612:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	20566760	20566762	.	-	0	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=stop_codon:HG003_chrY_T0000612;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567111	20567205	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000612:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567206	20567405	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000612:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20567206	20567405	.	-	2	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000612:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567406	20567558	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000612:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567559	20567628	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000612:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20567559	20567628	.	-	0	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000612:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567629	20567911	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000612:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567912	20568511	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000612:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20567912	20568511	.	-	0	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000612:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20568512	20568698	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000612:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20568699	20568836	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000612:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20568699	20568836	.	-	0	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000612:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20568837	20569086	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000612:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20569087	20569188	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000612:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20569087	20569188	.	-	0	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000612:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20569189	20569639	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000612:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20569640	20569778	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000612:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20569640	20569778	.	-	1	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000612:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20569779	20570215	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000612:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20570216	20570343	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000612:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20570216	20570343	.	-	0	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000612:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20570344	20571140	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000612:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20571141	20571237	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000612:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20571141	20571237	.	-	1	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000612:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20571238	20576116	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000612:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576117	20576264	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000612:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576117	20576264	.	-	2	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000612:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576265	20576379	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000612:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576380	20576504	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000612:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576380	20576504	.	-	1	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000612:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576505	20576587	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000612:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576588	20576769	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000612:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576588	20576769	.	-	0	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000612:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576770	20577043	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000612:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20577044	20577238	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000612:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20577044	20577238	.	-	0	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000612:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20577239	20577360	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000612:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20577361	20577480	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000612:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20577361	20577480	.	-	0	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000612:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20577481	20581636	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000612:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20581637	20581799	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000612:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20581637	20581799	.	-	1	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000612:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20581800	20581894	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000612:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20581895	20582076	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000612:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20581895	20582076	.	-	0	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000612:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20582077	20592536	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000612:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20592537	20592695	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000612:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20592537	20592695	.	-	0	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000612:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20592696	20592810	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000612:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20592811	20592930	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000612:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20592811	20592930	.	-	0	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000612:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20592931	20593348	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000612:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20593349	20593507	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000612:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20593349	20593507	.	-	0	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000612:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20593508	20596116	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000612:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20596117	20596262	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000612:19;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20596117	20596262	.	-	2	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000612:19;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20596263	20596385	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000612:19;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20596386	20596515	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000612:20;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20596386	20596515	.	-	0	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000612:20;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20596516	20600292	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000612:20;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20600293	20600427	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000612:21;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20600293	20600427	.	-	0	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000612:21;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20600428	20602082	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000612:21;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20602083	20602253	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000612:22;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20602083	20602253	.	-	0	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000612:22;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20602254	20602499	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000612:22;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20602500	20602622	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000612:23;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20602500	20602622	.	-	0	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000612:23;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20602623	20603926	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000612:23;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20603927	20604004	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000612:24;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20603927	20604004	.	-	0	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000612:24;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20604005	20605149	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000612:24;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20605150	20605318	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000612:25;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20605150	20605299	.	-	0	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000612:25;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	20605297	20605299	.	-	0	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=start_codon:HG003_chrY_T0000612;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20605319	20605435	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000612:25;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20605436	20605491	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000612;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000612:26;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20564630	20605491	100	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_G0000223;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=HG003_chrY_T0000613;Name=KDM5D
HG003_chrY	CAT	exon	20564630	20567110	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000613:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20566760	20567110	.	-	0	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000613:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	20566760	20566762	.	-	0	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=stop_codon:HG003_chrY_T0000613;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567111	20567205	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000613:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567206	20567405	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000613:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20567206	20567405	.	-	2	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000613:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567406	20567558	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000613:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567559	20567628	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000613:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20567559	20567628	.	-	0	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000613:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567629	20567911	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000613:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567912	20568511	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000613:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20567912	20568511	.	-	0	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000613:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20568512	20568698	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000613:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20568699	20568836	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000613:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20568699	20568836	.	-	0	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000613:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20568837	20569008	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000613:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20569009	20569188	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000613:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20569009	20569188	.	-	0	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000613:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20569189	20569639	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000613:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20569640	20569778	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000613:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20569640	20569778	.	-	1	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000613:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20569779	20570215	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000613:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20570216	20570343	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000613:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20570216	20570343	.	-	0	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000613:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20570344	20571140	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000613:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20571141	20571237	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000613:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20571141	20571237	.	-	1	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000613:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20571238	20576116	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000613:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576117	20576264	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000613:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576117	20576264	.	-	2	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000613:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576265	20576379	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000613:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576380	20576504	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000613:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576380	20576504	.	-	1	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000613:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576505	20576587	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000613:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576588	20576769	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000613:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576588	20576769	.	-	0	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000613:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576770	20577043	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000613:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20577044	20577238	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000613:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20577044	20577238	.	-	0	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000613:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20577239	20577360	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000613:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20577361	20577480	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000613:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20577361	20577480	.	-	0	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000613:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20577481	20581636	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000613:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20581637	20581799	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000613:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20581637	20581799	.	-	1	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000613:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20581800	20581894	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000613:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20581895	20582076	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000613:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20581895	20582076	.	-	0	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000613:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20582077	20592536	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000613:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20592537	20592695	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000613:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20592537	20592695	.	-	0	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000613:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20592696	20592810	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000613:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20592811	20592930	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000613:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20592811	20592930	.	-	0	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000613:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20592931	20593348	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000613:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20593349	20593507	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000613:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20593349	20593507	.	-	0	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000613:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20593508	20596116	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000613:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20596117	20596262	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000613:19;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20596117	20596262	.	-	2	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000613:19;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20596263	20596385	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000613:19;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20596386	20596515	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000613:20;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20596386	20596515	.	-	0	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000613:20;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20596516	20602082	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000613:20;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20602083	20602253	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000613:21;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20602083	20602253	.	-	0	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000613:21;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20602254	20602499	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000613:21;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20602500	20602622	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000613:22;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20602500	20602622	.	-	0	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000613:22;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20602623	20603926	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000613:22;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20603927	20604004	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000613:23;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20603927	20604004	.	-	0	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000613:23;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20604005	20605149	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000613:23;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20605150	20605318	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000613:24;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20605150	20605299	.	-	0	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000613:24;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	20605297	20605299	.	-	0	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=start_codon:HG003_chrY_T0000613;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20605319	20605435	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000613:24;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20605436	20605491	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000613;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000613:25;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20564630	20605491	100	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_G0000223;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=HG003_chrY_T0000614;Name=KDM5D
HG003_chrY	CAT	exon	20564630	20567110	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000614:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20566760	20567110	.	-	0	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000614:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	20566760	20566762	.	-	0	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=stop_codon:HG003_chrY_T0000614;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567111	20567205	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000614:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567206	20567405	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000614:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20567206	20567405	.	-	2	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000614:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567406	20567558	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000614:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567559	20567628	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000614:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20567559	20567628	.	-	0	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000614:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567629	20567911	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000614:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567912	20568511	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000614:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20567912	20568511	.	-	0	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000614:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20568512	20568698	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000614:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20568699	20568836	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000614:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20568699	20568836	.	-	0	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000614:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20568837	20569086	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000614:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20569087	20569188	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000614:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20569087	20569188	.	-	0	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000614:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20569189	20569639	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000614:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20569640	20569778	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000614:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20569640	20569778	.	-	1	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000614:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20569779	20570215	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000614:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20570216	20570343	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000614:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20570216	20570343	.	-	0	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000614:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20570344	20571140	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000614:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20571141	20571237	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000614:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20571141	20571237	.	-	1	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000614:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20571238	20576116	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000614:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576117	20576264	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000614:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576117	20576264	.	-	2	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000614:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576265	20576379	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000614:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576380	20576504	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000614:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576380	20576504	.	-	1	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000614:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576505	20576587	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000614:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576588	20576769	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000614:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576588	20576769	.	-	0	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000614:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576770	20577043	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000614:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20577044	20577238	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000614:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20577044	20577238	.	-	0	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000614:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20577239	20577360	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000614:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20577361	20577480	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000614:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20577361	20577480	.	-	0	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000614:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20577481	20581636	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000614:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20581637	20581799	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000614:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20581637	20581799	.	-	1	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000614:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20581800	20581894	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000614:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20581895	20582076	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000614:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20581895	20582076	.	-	0	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000614:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20582077	20592536	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000614:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20592537	20592695	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000614:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20592537	20592695	.	-	0	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000614:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20592696	20592810	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000614:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20592811	20592930	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000614:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20592811	20592930	.	-	0	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000614:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20592931	20593348	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000614:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20593349	20593507	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000614:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20593349	20593507	.	-	0	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000614:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20593508	20596116	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000614:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20596117	20596262	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000614:19;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20596117	20596262	.	-	2	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000614:19;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20596263	20596385	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000614:19;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20596386	20596515	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000614:20;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20596386	20596515	.	-	0	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000614:20;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20596516	20602082	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000614:20;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20602083	20602253	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000614:21;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20602083	20602253	.	-	0	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000614:21;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20602254	20602499	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000614:21;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20602500	20602622	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000614:22;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20602500	20602622	.	-	0	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000614:22;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20602623	20603926	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000614:22;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20603927	20604004	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000614:23;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20603927	20604004	.	-	0	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000614:23;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20604005	20605149	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000614:23;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20605150	20605318	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000614:24;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20605150	20605299	.	-	0	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000614:24;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	20605297	20605299	.	-	0	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=start_codon:HG003_chrY_T0000614;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20605319	20605435	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000614:24;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20605436	20605491	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000614;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000614:25;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20564630	20605491	100	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_G0000223;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=HG003_chrY_T0000615;Name=KDM5D
HG003_chrY	CAT	exon	20564630	20567110	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000615:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20566760	20567110	.	-	0	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000615:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	20566760	20566762	.	-	0	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=stop_codon:HG003_chrY_T0000615;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567111	20567205	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000615:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567206	20567405	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000615:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20567206	20567405	.	-	2	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000615:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567406	20567558	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000615:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567559	20567628	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000615:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20567559	20567628	.	-	0	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000615:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567629	20567911	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000615:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567912	20568511	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000615:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20567912	20568511	.	-	0	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000615:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20568512	20568698	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000615:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20568699	20568836	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000615:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20568699	20568836	.	-	0	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000615:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20568837	20569008	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000615:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20569009	20569188	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000615:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20569009	20569188	.	-	0	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000615:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20569189	20569639	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000615:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20569640	20569778	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000615:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20569640	20569778	.	-	1	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000615:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20569779	20570215	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000615:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20570216	20570574	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000615:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20570216	20570574	.	-	0	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000615:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20570575	20571140	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000615:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20571141	20571237	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000615:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20571141	20571237	.	-	1	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000615:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20571238	20576116	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000615:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576117	20576264	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000615:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576117	20576264	.	-	2	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000615:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576265	20576379	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000615:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576380	20576504	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000615:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576380	20576504	.	-	1	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000615:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576505	20576587	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000615:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576588	20576769	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000615:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576588	20576769	.	-	0	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000615:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576770	20577043	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000615:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20577044	20577238	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000615:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20577044	20577238	.	-	0	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000615:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20577239	20577360	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000615:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20577361	20577480	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000615:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20577361	20577480	.	-	0	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000615:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20577481	20581636	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000615:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20581637	20581799	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000615:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20581637	20581799	.	-	1	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000615:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20581800	20581894	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000615:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20581895	20582076	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000615:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20581895	20582076	.	-	0	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000615:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20582077	20592536	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000615:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20592537	20592695	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000615:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20592537	20592695	.	-	0	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000615:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20592696	20592810	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000615:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20592811	20592930	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000615:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20592811	20592930	.	-	0	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000615:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20592931	20593348	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000615:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20593349	20593507	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000615:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20593349	20593507	.	-	0	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000615:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20593508	20596116	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000615:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20596117	20596262	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000615:19;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20596117	20596262	.	-	2	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000615:19;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20596263	20596385	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000615:19;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20596386	20596515	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000615:20;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20596386	20596515	.	-	0	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000615:20;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20596516	20600292	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000615:20;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20600293	20600427	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000615:21;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20600293	20600427	.	-	0	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000615:21;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20600428	20602499	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000615:21;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20602500	20602622	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000615:22;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20602500	20602622	.	-	0	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000615:22;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20602623	20603926	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000615:22;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20603927	20604004	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000615:23;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20603927	20604004	.	-	0	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000615:23;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20604005	20605149	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000615:23;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20605150	20605318	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000615:24;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20605150	20605299	.	-	0	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000615:24;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	20605297	20605299	.	-	0	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=start_codon:HG003_chrY_T0000615;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20605319	20605435	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000615:24;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20605436	20605491	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000615;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000615:25;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20564630	20605491	100	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_G0000223;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=HG003_chrY_T0000616;Name=KDM5D
HG003_chrY	CAT	exon	20564630	20567110	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000616:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20566760	20567110	.	-	0	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000616:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	20566760	20566762	.	-	0	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=stop_codon:HG003_chrY_T0000616;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567111	20567205	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000616:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567206	20567405	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000616:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20567206	20567405	.	-	2	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000616:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567406	20567558	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000616:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567559	20567628	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000616:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20567559	20567628	.	-	0	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000616:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567629	20567911	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000616:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567912	20568511	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000616:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20567912	20568511	.	-	0	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000616:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20568512	20568698	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000616:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20568699	20568836	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000616:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20568699	20568836	.	-	0	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000616:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20568837	20569008	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000616:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20569009	20569188	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000616:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20569009	20569188	.	-	0	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000616:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20569189	20569639	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000616:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20569640	20569778	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000616:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20569640	20569778	.	-	1	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000616:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20569779	20570215	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000616:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20570216	20570574	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000616:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20570216	20570574	.	-	0	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000616:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20570575	20571140	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000616:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20571141	20571237	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000616:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20571141	20571237	.	-	1	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000616:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20571238	20576116	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000616:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576117	20576264	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000616:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576117	20576264	.	-	2	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000616:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576265	20576379	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000616:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576380	20576504	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000616:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576380	20576504	.	-	1	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000616:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576505	20576587	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000616:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576588	20576769	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000616:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576588	20576769	.	-	0	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000616:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576770	20577043	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000616:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20577044	20577238	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000616:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20577044	20577238	.	-	0	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000616:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20577239	20577360	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000616:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20577361	20577480	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000616:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20577361	20577480	.	-	0	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000616:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20577481	20581636	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000616:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20581637	20581799	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000616:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20581637	20581799	.	-	1	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000616:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20581800	20581894	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000616:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20581895	20582076	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000616:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20581895	20582076	.	-	0	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000616:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20582077	20592536	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000616:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20592537	20592695	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000616:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20592537	20592695	.	-	0	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000616:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20592696	20592810	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000616:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20592811	20592930	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000616:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20592811	20592930	.	-	0	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000616:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20592931	20593348	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000616:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20593349	20593507	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000616:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20593349	20593507	.	-	0	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000616:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20593508	20596116	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000616:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20596117	20596262	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000616:19;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20596117	20596262	.	-	2	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000616:19;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20596263	20596385	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000616:19;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20596386	20596515	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000616:20;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20596386	20596515	.	-	0	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000616:20;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20596516	20600292	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000616:20;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20600293	20600427	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000616:21;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20600293	20600427	.	-	0	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000616:21;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20600428	20602082	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000616:21;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20602083	20602253	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000616:22;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20602083	20602253	.	-	0	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000616:22;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20602254	20602499	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000616:22;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20602500	20602622	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000616:23;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20602500	20602622	.	-	0	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000616:23;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20602623	20603926	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000616:23;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20603927	20604004	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000616:24;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20603927	20604004	.	-	0	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000616:24;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20604005	20605149	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000616:24;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20605150	20605318	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000616:25;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20605150	20605299	.	-	0	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000616:25;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	20605297	20605299	.	-	0	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=start_codon:HG003_chrY_T0000616;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20605319	20605435	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000616:25;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20605436	20605491	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000616;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000616:26;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20564630	20605491	100	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_G0000223;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=HG003_chrY_T0000617;Name=KDM5D
HG003_chrY	CAT	exon	20564630	20567110	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000617:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20566760	20567110	.	-	0	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000617:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	20566760	20566762	.	-	0	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=stop_codon:HG003_chrY_T0000617;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567111	20567205	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000617:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567206	20567405	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000617:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20567206	20567405	.	-	2	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000617:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567406	20567558	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000617:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567559	20567628	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000617:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20567559	20567628	.	-	0	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000617:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567629	20567911	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000617:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567912	20568511	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000617:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20567912	20568511	.	-	0	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000617:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20568512	20568698	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000617:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20568699	20568836	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000617:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20568699	20568836	.	-	0	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000617:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20568837	20569008	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000617:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20569009	20569188	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000617:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20569009	20569188	.	-	0	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000617:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20569189	20569639	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000617:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20569640	20569778	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000617:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20569640	20569778	.	-	1	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000617:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20569779	20570215	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000617:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20570216	20570574	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000617:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20570216	20570574	.	-	0	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000617:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20570575	20571140	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000617:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20571141	20571237	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000617:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20571141	20571237	.	-	1	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000617:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20571238	20576116	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000617:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576117	20576264	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000617:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576117	20576264	.	-	2	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000617:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576265	20576379	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000617:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576380	20576504	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000617:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576380	20576504	.	-	1	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000617:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576505	20576587	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000617:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576588	20576769	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000617:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576588	20576769	.	-	0	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000617:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576770	20577043	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000617:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20577044	20577238	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000617:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20577044	20577238	.	-	0	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000617:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20577239	20577360	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000617:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20577361	20577480	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000617:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20577361	20577480	.	-	0	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000617:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20577481	20581636	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000617:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20581637	20581799	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000617:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20581637	20581799	.	-	1	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000617:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20581800	20581894	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000617:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20581895	20582076	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000617:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20581895	20582076	.	-	0	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000617:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20582077	20592536	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000617:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20592537	20592695	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000617:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20592537	20592695	.	-	0	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000617:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20592696	20592810	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000617:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20592811	20592930	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000617:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20592811	20592930	.	-	0	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000617:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20592931	20593348	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000617:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20593349	20593507	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000617:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20593349	20593507	.	-	0	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000617:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20593508	20596116	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000617:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20596117	20596262	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000617:19;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20596117	20596262	.	-	2	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000617:19;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20596263	20596385	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000617:19;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20596386	20596515	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000617:20;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20596386	20596515	.	-	0	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000617:20;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20596516	20602082	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000617:20;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20602083	20602253	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000617:21;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20602083	20602253	.	-	0	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000617:21;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20602254	20602499	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000617:21;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20602500	20602622	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000617:22;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20602500	20602622	.	-	0	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000617:22;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20602623	20603926	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000617:22;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20603927	20604004	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000617:23;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20603927	20604004	.	-	0	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000617:23;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20604005	20605149	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000617:23;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20605150	20605318	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000617:24;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20605150	20605299	.	-	0	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000617:24;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	20605297	20605299	.	-	0	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=start_codon:HG003_chrY_T0000617;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20605319	20605435	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000617:24;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20605436	20605491	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000617;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000617:25;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20564630	20605491	100	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_G0000223;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=HG003_chrY_T0000618;Name=KDM5D
HG003_chrY	CAT	exon	20564630	20567110	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000618:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20566760	20567110	.	-	0	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000618:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	20566760	20566762	.	-	0	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=stop_codon:HG003_chrY_T0000618;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567111	20567205	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000618:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567206	20567405	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000618:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20567206	20567405	.	-	2	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000618:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567406	20567558	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000618:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567559	20567628	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000618:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20567559	20567628	.	-	0	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000618:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567629	20567911	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000618:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567912	20568511	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000618:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20567912	20568511	.	-	0	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000618:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20568512	20568698	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000618:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20568699	20568836	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000618:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20568699	20568836	.	-	0	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000618:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20568837	20569008	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000618:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20569009	20569188	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000618:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20569009	20569188	.	-	0	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000618:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20569189	20569639	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000618:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20569640	20569778	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000618:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20569640	20569778	.	-	1	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000618:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20569779	20570215	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000618:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20570216	20570343	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000618:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20570216	20570343	.	-	0	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000618:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20570344	20571140	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000618:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20571141	20571237	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000618:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20571141	20571237	.	-	1	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000618:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20571238	20576116	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000618:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576117	20576264	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000618:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576117	20576264	.	-	2	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000618:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576265	20576379	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000618:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576380	20576504	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000618:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576380	20576504	.	-	1	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000618:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576505	20576587	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000618:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576588	20576769	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000618:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576588	20576769	.	-	0	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000618:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576770	20577043	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000618:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20577044	20577238	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000618:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20577044	20577238	.	-	0	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000618:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20577239	20577360	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000618:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20577361	20577480	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000618:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20577361	20577480	.	-	0	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000618:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20577481	20581636	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000618:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20581637	20581799	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000618:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20581637	20581799	.	-	1	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000618:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20581800	20581894	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000618:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20581895	20582076	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000618:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20581895	20582076	.	-	0	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000618:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20582077	20592536	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000618:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20592537	20592695	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000618:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20592537	20592695	.	-	0	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000618:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20592696	20592810	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000618:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20592811	20592930	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000618:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20592811	20592930	.	-	0	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000618:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20592931	20593348	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000618:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20593349	20593507	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000618:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20593349	20593507	.	-	0	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000618:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20593508	20596116	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000618:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20596117	20596262	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000618:19;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20596117	20596262	.	-	2	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000618:19;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20596263	20596385	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000618:19;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20596386	20596515	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000618:20;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20596386	20596515	.	-	0	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000618:20;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20596516	20600292	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000618:20;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20600293	20600427	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000618:21;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20600293	20600427	.	-	0	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000618:21;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20600428	20602082	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000618:21;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20602083	20602253	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000618:22;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20602083	20602253	.	-	0	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000618:22;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20602254	20602499	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000618:22;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20602500	20602622	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000618:23;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20602500	20602622	.	-	0	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000618:23;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20602623	20603926	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000618:23;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20603927	20604004	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000618:24;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20603927	20604004	.	-	0	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000618:24;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20604005	20605149	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000618:24;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20605150	20605318	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000618:25;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20605150	20605299	.	-	0	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000618:25;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	20605297	20605299	.	-	0	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=start_codon:HG003_chrY_T0000618;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20605319	20605435	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000618:25;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20605436	20605491	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000618;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000618:26;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20564630	20605491	100	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_G0000223;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=HG003_chrY_T0000619;Name=KDM5D
HG003_chrY	CAT	exon	20564630	20567110	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000619:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20566760	20567110	.	-	0	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000619:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	20566760	20566762	.	-	0	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=stop_codon:HG003_chrY_T0000619;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567111	20567205	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000619:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567206	20567405	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000619:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20567206	20567405	.	-	2	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000619:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567406	20567558	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000619:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567559	20567628	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000619:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20567559	20567628	.	-	0	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000619:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567629	20567911	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000619:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567912	20568511	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000619:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20567912	20568511	.	-	0	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000619:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20568512	20568698	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000619:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20568699	20568836	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000619:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20568699	20568836	.	-	0	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000619:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20568837	20569086	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000619:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20569087	20569188	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000619:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20569087	20569188	.	-	0	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000619:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20569189	20569639	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000619:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20569640	20569778	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000619:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20569640	20569778	.	-	1	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000619:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20569779	20570215	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000619:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20570216	20570574	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000619:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20570216	20570574	.	-	0	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000619:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20570575	20571140	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000619:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20571141	20571237	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000619:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20571141	20571237	.	-	1	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000619:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20571238	20576116	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000619:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576117	20576264	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000619:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576117	20576264	.	-	2	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000619:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576265	20576379	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000619:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576380	20576504	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000619:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576380	20576504	.	-	1	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000619:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576505	20576587	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000619:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576588	20576769	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000619:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576588	20576769	.	-	0	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000619:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576770	20577043	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000619:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20577044	20577238	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000619:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20577044	20577238	.	-	0	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000619:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20577239	20577360	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000619:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20577361	20577480	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000619:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20577361	20577480	.	-	0	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000619:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20577481	20581636	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000619:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20581637	20581799	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000619:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20581637	20581799	.	-	1	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000619:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20581800	20581894	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000619:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20581895	20582076	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000619:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20581895	20582076	.	-	0	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000619:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20582077	20592536	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000619:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20592537	20592695	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000619:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20592537	20592695	.	-	0	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000619:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20592696	20592810	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000619:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20592811	20592930	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000619:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20592811	20592930	.	-	0	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000619:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20592931	20593348	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000619:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20593349	20593507	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000619:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20593349	20593507	.	-	0	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000619:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20593508	20596116	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000619:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20596117	20596262	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000619:19;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20596117	20596262	.	-	2	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000619:19;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20596263	20596385	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000619:19;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20596386	20596515	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000619:20;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20596386	20596515	.	-	0	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000619:20;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20596516	20600292	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000619:20;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20600293	20600427	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000619:21;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20600293	20600427	.	-	0	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000619:21;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20600428	20602082	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000619:21;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20602083	20602253	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000619:22;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20602083	20602253	.	-	0	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000619:22;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20602254	20602499	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000619:22;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20602500	20602622	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000619:23;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20602500	20602622	.	-	0	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000619:23;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20602623	20603926	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000619:23;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20603927	20604004	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000619:24;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20603927	20604004	.	-	0	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000619:24;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20604005	20605149	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000619:24;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20605150	20605318	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000619:25;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20605150	20605299	.	-	0	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000619:25;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	20605297	20605299	.	-	0	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=start_codon:HG003_chrY_T0000619;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20605319	20605435	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000619:25;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20605436	20605491	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000619;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000619:26;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20564630	20605491	100	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_G0000223;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=HG003_chrY_T0000620;Name=KDM5D
HG003_chrY	CAT	exon	20564630	20567110	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000620:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20566760	20567110	.	-	0	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000620:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	20566760	20566762	.	-	0	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=stop_codon:HG003_chrY_T0000620;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567111	20567205	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000620:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567206	20567405	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000620:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20567206	20567405	.	-	2	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000620:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567406	20567558	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000620:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567559	20567628	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000620:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20567559	20567628	.	-	0	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000620:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567629	20567911	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000620:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567912	20568511	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000620:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20567912	20568511	.	-	0	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000620:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20568512	20568698	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000620:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20568699	20568836	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000620:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20568699	20568836	.	-	0	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000620:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20568837	20569086	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000620:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20569087	20569188	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000620:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20569087	20569188	.	-	0	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000620:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20569189	20569639	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000620:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20569640	20569778	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000620:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20569640	20569778	.	-	1	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000620:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20569779	20570215	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000620:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20570216	20570574	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000620:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20570216	20570574	.	-	0	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000620:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20570575	20571140	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000620:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20571141	20571237	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000620:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20571141	20571237	.	-	1	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000620:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20571238	20576116	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000620:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576117	20576264	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000620:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576117	20576264	.	-	2	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000620:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576265	20576379	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000620:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576380	20576504	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000620:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576380	20576504	.	-	1	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000620:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576505	20576587	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000620:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576588	20576769	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000620:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576588	20576769	.	-	0	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000620:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576770	20577043	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000620:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20577044	20577238	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000620:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20577044	20577238	.	-	0	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000620:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20577239	20577360	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000620:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20577361	20577480	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000620:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20577361	20577480	.	-	0	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000620:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20577481	20581636	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000620:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20581637	20581799	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000620:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20581637	20581799	.	-	1	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000620:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20581800	20581894	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000620:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20581895	20582076	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000620:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20581895	20582076	.	-	0	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000620:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20582077	20592536	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000620:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20592537	20592695	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000620:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20592537	20592695	.	-	0	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000620:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20592696	20592810	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000620:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20592811	20592930	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000620:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20592811	20592930	.	-	0	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000620:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20592931	20593348	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000620:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20593349	20593507	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000620:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20593349	20593507	.	-	0	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000620:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20593508	20596116	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000620:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20596117	20596262	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000620:19;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20596117	20596262	.	-	2	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000620:19;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20596263	20596385	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000620:19;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20596386	20596515	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000620:20;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20596386	20596515	.	-	0	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000620:20;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20596516	20602082	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000620:20;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20602083	20602253	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000620:21;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20602083	20602253	.	-	0	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000620:21;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20602254	20602499	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000620:21;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20602500	20602622	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000620:22;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20602500	20602622	.	-	0	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000620:22;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20602623	20603926	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000620:22;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20603927	20604004	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000620:23;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20603927	20604004	.	-	0	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000620:23;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20604005	20605149	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000620:23;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20605150	20605318	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000620:24;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20605150	20605299	.	-	0	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000620:24;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	20605297	20605299	.	-	0	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=start_codon:HG003_chrY_T0000620;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20605319	20605435	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000620:24;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20605436	20605491	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000620;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000620:25;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20567243	20605491	100	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_G0000223;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=HG003_chrY_T0000621;Name=KDM5D
HG003_chrY	CAT	exon	20567243	20567373	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000621:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20567345	20567373	.	-	2	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000621:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	20567345	20567347	.	-	0	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=stop_codon:HG003_chrY_T0000621;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567374	20567558	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000621:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567559	20567628	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000621:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20567559	20567628	.	-	0	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000621:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567629	20567911	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000621:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567912	20568511	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000621:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20567912	20568511	.	-	0	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000621:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20568512	20568698	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000621:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20568699	20568836	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000621:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20568699	20568836	.	-	0	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000621:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20568837	20569008	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000621:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20569009	20569188	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000621:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20569009	20569188	.	-	0	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000621:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20569189	20569639	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000621:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20569640	20569778	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000621:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20569640	20569778	.	-	1	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000621:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20569779	20570215	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000621:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20570216	20570574	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000621:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20570216	20570574	.	-	0	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000621:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20570575	20571140	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000621:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20571141	20571237	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000621:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20571141	20571237	.	-	1	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000621:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20571238	20576116	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000621:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576117	20576264	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000621:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576117	20576264	.	-	2	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000621:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576265	20576379	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000621:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576380	20576504	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000621:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576380	20576504	.	-	1	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000621:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576505	20576587	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000621:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576588	20576769	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000621:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576588	20576769	.	-	0	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000621:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576770	20577043	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000621:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20577044	20577238	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000621:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20577044	20577238	.	-	0	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000621:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20577239	20577360	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000621:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20577361	20577480	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000621:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20577361	20577480	.	-	0	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000621:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20577481	20581636	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000621:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20581637	20581799	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000621:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20581637	20581799	.	-	1	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000621:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20581800	20581894	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000621:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20581895	20582076	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000621:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20581895	20582076	.	-	0	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000621:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20582077	20592536	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000621:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20592537	20592695	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000621:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20592537	20592695	.	-	0	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000621:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20592696	20592810	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000621:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20592811	20592930	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000621:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20592811	20592930	.	-	0	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000621:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20592931	20593348	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000621:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20593349	20593507	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000621:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20593349	20593507	.	-	0	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000621:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20593508	20596116	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000621:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20596117	20596262	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000621:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20596117	20596262	.	-	2	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000621:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20596263	20596385	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000621:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20596386	20596515	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000621:19;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20596386	20596515	.	-	0	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000621:19;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20596516	20600292	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000621:19;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20600293	20600427	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000621:20;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20600293	20600427	.	-	0	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000621:20;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20600428	20602082	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000621:20;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20602083	20602253	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000621:21;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20602083	20602253	.	-	0	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000621:21;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20602254	20602499	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000621:21;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20602500	20602622	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000621:22;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20602500	20602622	.	-	0	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000621:22;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20602623	20603926	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000621:22;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20603927	20604004	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000621:23;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20603927	20604004	.	-	0	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000621:23;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20604005	20605149	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000621:23;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20605150	20605318	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000621:24;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20605150	20605299	.	-	0	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000621:24;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	20605297	20605299	.	-	0	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=start_codon:HG003_chrY_T0000621;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20605319	20605435	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000621:24;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20605436	20605491	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000621;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000621:25;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20570225	20605491	100	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_G0000223;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=HG003_chrY_T0000622;Name=KDM5D
HG003_chrY	CAT	exon	20570225	20571025	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000622:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20570942	20571025	.	-	0	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000622:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	20570942	20570944	.	-	0	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=stop_codon:HG003_chrY_T0000622;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20571026	20571140	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000622:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20571141	20571237	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000622:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20571141	20571237	.	-	1	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000622:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20571238	20576116	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000622:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576117	20576264	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000622:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576117	20576264	.	-	2	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000622:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576265	20576379	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000622:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576380	20576504	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000622:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576380	20576504	.	-	1	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000622:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576505	20576587	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000622:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576588	20576769	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000622:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576588	20576769	.	-	0	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000622:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576770	20577043	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000622:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20577044	20577238	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000622:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20577044	20577238	.	-	0	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000622:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20577239	20577360	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000622:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20577361	20577480	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000622:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20577361	20577480	.	-	0	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000622:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20577481	20581636	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000622:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20581637	20581799	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000622:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20581637	20581799	.	-	1	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000622:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20581800	20581894	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000622:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20581895	20582076	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000622:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20581895	20582076	.	-	0	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000622:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20582077	20592536	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000622:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20592537	20592695	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000622:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20592537	20592695	.	-	0	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000622:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20592696	20592810	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000622:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20592811	20592930	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000622:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20592811	20592930	.	-	0	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000622:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20592931	20593348	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000622:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20593349	20593507	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000622:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20593349	20593507	.	-	0	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000622:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20593508	20596116	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000622:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20596117	20596262	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000622:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20596117	20596262	.	-	2	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000622:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20596263	20596385	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000622:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20596386	20596515	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000622:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20596386	20596515	.	-	0	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000622:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20596516	20600292	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000622:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20600293	20600427	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000622:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20600293	20600427	.	-	0	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000622:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20600428	20602082	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000622:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20602083	20602253	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000622:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20602083	20602253	.	-	0	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000622:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20602254	20602499	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000622:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20602500	20602622	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000622:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20602500	20602622	.	-	0	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000622:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20602623	20603926	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000622:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20603927	20604004	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000622:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20603927	20604004	.	-	0	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000622:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20604005	20605149	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000622:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20605150	20605318	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000622:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20605150	20605299	.	-	0	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000622:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	20605297	20605299	.	-	0	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=start_codon:HG003_chrY_T0000622;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20605319	20605435	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000622:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20605436	20605491	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000622;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000622:19;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20571165	20605491	100	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_G0000223;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=HG003_chrY_T0000623;Name=KDM5D
HG003_chrY	CAT	exon	20571165	20571237	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000623:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20571238	20576348	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000623:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576349	20576504	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000623:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576372	20576504	.	-	1	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000623:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	20576372	20576374	.	-	0	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=stop_codon:HG003_chrY_T0000623;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576505	20576587	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000623:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576588	20576769	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000623:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576588	20576769	.	-	0	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000623:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576770	20577043	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000623:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20577044	20577238	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000623:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20577044	20577238	.	-	0	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000623:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20577239	20577360	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000623:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20577361	20577480	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000623:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20577361	20577480	.	-	0	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000623:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20577481	20581636	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000623:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20581637	20581799	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000623:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20581637	20581799	.	-	1	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000623:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20581800	20581894	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000623:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20581895	20582076	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000623:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20581895	20582076	.	-	0	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000623:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20582077	20592536	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000623:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20592537	20592695	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000623:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20592537	20592695	.	-	0	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000623:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20592696	20592810	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000623:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20592811	20592930	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000623:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20592811	20592930	.	-	0	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000623:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20592931	20593348	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000623:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20593349	20593507	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000623:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20593349	20593507	.	-	0	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000623:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20593508	20596116	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000623:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20596117	20596262	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000623:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20596117	20596262	.	-	2	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000623:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20596263	20596385	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000623:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20596386	20596515	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000623:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20596386	20596515	.	-	0	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000623:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20596516	20600292	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000623:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20600293	20600427	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000623:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20600293	20600427	.	-	0	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000623:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20600428	20602082	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000623:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20602083	20602253	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000623:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20602083	20602253	.	-	0	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000623:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20602254	20602499	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000623:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20602500	20602622	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000623:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20602500	20602622	.	-	0	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000623:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20602623	20603926	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000623:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20603927	20604004	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000623:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20603927	20604004	.	-	0	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000623:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20604005	20605149	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000623:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20605150	20605318	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000623:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20605150	20605299	.	-	0	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000623:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	20605297	20605299	.	-	0	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=start_codon:HG003_chrY_T0000623;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20605319	20605435	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000623:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20605436	20605491	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000623;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000623:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20576636	20605491	100	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_G0000223;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=HG003_chrY_T0000624;Name=KDM5D
HG003_chrY	CAT	exon	20576636	20576769	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000624:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576753	20576769	.	-	2	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000624:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	20576753	20576755	.	-	0	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=stop_codon:HG003_chrY_T0000624;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576770	20576863	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000624:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576864	20576876	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000624:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576864	20576876	.	-	0	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000624:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576877	20577043	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000624:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20577044	20577238	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000624:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20577044	20577238	.	-	0	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000624:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20577239	20577360	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000624:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20577361	20577480	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000624:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20577361	20577480	.	-	0	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000624:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20577481	20581636	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000624:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20581637	20581799	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000624:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20581637	20581799	.	-	1	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000624:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20581800	20581894	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000624:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20581895	20582076	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000624:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20581895	20582076	.	-	0	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000624:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20582077	20592536	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000624:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20592537	20592695	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000624:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20592537	20592695	.	-	0	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000624:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20592696	20592810	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000624:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20592811	20592930	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000624:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20592811	20592930	.	-	0	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000624:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20592931	20593348	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000624:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20593349	20593507	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000624:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20593349	20593507	.	-	0	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000624:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20593508	20596116	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000624:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20596117	20596262	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000624:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20596117	20596262	.	-	2	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000624:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20596263	20596385	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000624:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20596386	20596515	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000624:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20596386	20596515	.	-	0	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000624:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20596516	20600292	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000624:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20600293	20600427	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000624:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20600293	20600427	.	-	0	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000624:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20600428	20602082	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000624:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20602083	20602253	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000624:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20602083	20602253	.	-	0	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000624:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20602254	20602499	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000624:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20602500	20602622	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000624:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20602500	20602622	.	-	0	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000624:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20602623	20603926	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000624:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20603927	20604004	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000624:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20603927	20604004	.	-	0	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000624:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20604005	20605149	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000624:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20605150	20605318	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000624:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20605150	20605299	.	-	0	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:HG003_chrY_T0000624:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	20605297	20605299	.	-	0	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=start_codon:HG003_chrY_T0000624;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20605319	20605435	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:HG003_chrY_T0000624:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20605436	20605491	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000624;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:HG003_chrY_T0000624:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	20605521	20618214	.	+	.	source_gene_common_name=LOC105377224;source_gene=hg002_chrY_paternal_436;alternative_source_transcripts=hg002_chrY_paternal_436.1,hg002_chrY_paternal_436.1;gene_id=HG003_chrY_G0000224;gene_biotype=lncRNA;gene_name=LOC105377224;gene_sources=liftoff;ID=HG003_chrY_G0000224;Name=LOC105377224
HG003_chrY	CAT	transcript	20605521	20618321	1000	+	.	source_transcript=hg002_chrY_paternal_436.1;source_transcript_name=hg002_chrY_paternal_436.1;source_gene=hg002_chrY_paternal_436;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_436;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_436.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_436.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377224;alternative_source_transcripts=hg002_chrY_paternal_436.1,hg002_chrY_paternal_436.1;transcript_id=HG003_chrY_T0000625;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_G0000224;transcript_name=hg002_chrY_paternal_436.1;gene_name=LOC105377224;ID=HG003_chrY_T0000625;Name=LOC105377224
HG003_chrY	CAT	exon	20605521	20606478	.	+	.	source_transcript=hg002_chrY_paternal_436.1;source_transcript_name=hg002_chrY_paternal_436.1;source_gene=hg002_chrY_paternal_436;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_436;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_436.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_436.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377224;alternative_source_transcripts=hg002_chrY_paternal_436.1,hg002_chrY_paternal_436.1;transcript_id=HG003_chrY_T0000625;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000625;transcript_name=hg002_chrY_paternal_436.1;gene_name=LOC105377224;ID=exon:HG003_chrY_T0000625:0;Name=LOC105377224;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20606479	20615390	.	+	.	source_transcript=hg002_chrY_paternal_436.1;source_transcript_name=hg002_chrY_paternal_436.1;source_gene=hg002_chrY_paternal_436;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_436;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_436.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_436.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377224;alternative_source_transcripts=hg002_chrY_paternal_436.1,hg002_chrY_paternal_436.1;transcript_id=HG003_chrY_T0000625;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000625;transcript_name=hg002_chrY_paternal_436.1;gene_name=LOC105377224;ID=intron:HG003_chrY_T0000625:0;Name=LOC105377224;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20615391	20615580	.	+	.	source_transcript=hg002_chrY_paternal_436.1;source_transcript_name=hg002_chrY_paternal_436.1;source_gene=hg002_chrY_paternal_436;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_436;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_436.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_436.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377224;alternative_source_transcripts=hg002_chrY_paternal_436.1,hg002_chrY_paternal_436.1;transcript_id=HG003_chrY_T0000625;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000625;transcript_name=hg002_chrY_paternal_436.1;gene_name=LOC105377224;ID=exon:HG003_chrY_T0000625:1;Name=LOC105377224;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20615581	20615969	.	+	.	source_transcript=hg002_chrY_paternal_436.1;source_transcript_name=hg002_chrY_paternal_436.1;source_gene=hg002_chrY_paternal_436;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_436;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_436.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_436.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377224;alternative_source_transcripts=hg002_chrY_paternal_436.1,hg002_chrY_paternal_436.1;transcript_id=HG003_chrY_T0000625;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000625;transcript_name=hg002_chrY_paternal_436.1;gene_name=LOC105377224;ID=intron:HG003_chrY_T0000625:1;Name=LOC105377224;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20615970	20618321	.	+	.	source_transcript=hg002_chrY_paternal_436.1;source_transcript_name=hg002_chrY_paternal_436.1;source_gene=hg002_chrY_paternal_436;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_436;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_436.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_436.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377224;alternative_source_transcripts=hg002_chrY_paternal_436.1,hg002_chrY_paternal_436.1;transcript_id=HG003_chrY_T0000625;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000625;transcript_name=hg002_chrY_paternal_436.1;gene_name=LOC105377224;ID=exon:HG003_chrY_T0000625:2;Name=LOC105377224;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20605550	20619836	1000	+	.	source_transcript=hg002_chrY_paternal_436.2;source_transcript_name=hg002_chrY_paternal_436.1;source_gene=hg002_chrY_paternal_436;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_436;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_436.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_436.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377224;alternative_source_transcripts=hg002_chrY_paternal_436.2,hg002_chrY_paternal_436.2;transcript_id=HG003_chrY_T0000626;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_G0000224;transcript_name=hg002_chrY_paternal_436.1;gene_name=LOC105377224;ID=HG003_chrY_T0000626;Name=LOC105377224
HG003_chrY	CAT	exon	20605550	20606478	.	+	.	source_transcript=hg002_chrY_paternal_436.2;source_transcript_name=hg002_chrY_paternal_436.1;source_gene=hg002_chrY_paternal_436;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_436;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_436.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_436.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377224;alternative_source_transcripts=hg002_chrY_paternal_436.2,hg002_chrY_paternal_436.2;transcript_id=HG003_chrY_T0000626;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000626;transcript_name=hg002_chrY_paternal_436.1;gene_name=LOC105377224;ID=exon:HG003_chrY_T0000626:0;Name=LOC105377224;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20606479	20615491	.	+	.	source_transcript=hg002_chrY_paternal_436.2;source_transcript_name=hg002_chrY_paternal_436.1;source_gene=hg002_chrY_paternal_436;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_436;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_436.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_436.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377224;alternative_source_transcripts=hg002_chrY_paternal_436.2,hg002_chrY_paternal_436.2;transcript_id=HG003_chrY_T0000626;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000626;transcript_name=hg002_chrY_paternal_436.1;gene_name=LOC105377224;ID=intron:HG003_chrY_T0000626:0;Name=LOC105377224;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20615492	20615580	.	+	.	source_transcript=hg002_chrY_paternal_436.2;source_transcript_name=hg002_chrY_paternal_436.1;source_gene=hg002_chrY_paternal_436;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_436;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_436.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_436.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377224;alternative_source_transcripts=hg002_chrY_paternal_436.2,hg002_chrY_paternal_436.2;transcript_id=HG003_chrY_T0000626;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000626;transcript_name=hg002_chrY_paternal_436.1;gene_name=LOC105377224;ID=exon:HG003_chrY_T0000626:1;Name=LOC105377224;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20615581	20615969	.	+	.	source_transcript=hg002_chrY_paternal_436.2;source_transcript_name=hg002_chrY_paternal_436.1;source_gene=hg002_chrY_paternal_436;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_436;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_436.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_436.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377224;alternative_source_transcripts=hg002_chrY_paternal_436.2,hg002_chrY_paternal_436.2;transcript_id=HG003_chrY_T0000626;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000626;transcript_name=hg002_chrY_paternal_436.1;gene_name=LOC105377224;ID=intron:HG003_chrY_T0000626:1;Name=LOC105377224;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20615970	20619836	.	+	.	source_transcript=hg002_chrY_paternal_436.2;source_transcript_name=hg002_chrY_paternal_436.1;source_gene=hg002_chrY_paternal_436;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_436;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_436.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_436.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377224;alternative_source_transcripts=hg002_chrY_paternal_436.2,hg002_chrY_paternal_436.2;transcript_id=HG003_chrY_T0000626;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000626;transcript_name=hg002_chrY_paternal_436.1;gene_name=LOC105377224;ID=exon:HG003_chrY_T0000626:2;Name=LOC105377224;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20605603	20618214	1000	+	.	source_transcript=hg002_chrY_paternal_436.3;source_transcript_name=hg002_chrY_paternal_436.1;source_gene=hg002_chrY_paternal_436;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_436;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_436.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_436.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377224;alternative_source_transcripts=hg002_chrY_paternal_436.3,hg002_chrY_paternal_436.3;transcript_id=HG003_chrY_T0000627;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_G0000224;transcript_name=hg002_chrY_paternal_436.1;gene_name=LOC105377224;ID=HG003_chrY_T0000627;Name=LOC105377224
HG003_chrY	CAT	exon	20605603	20606478	.	+	.	source_transcript=hg002_chrY_paternal_436.3;source_transcript_name=hg002_chrY_paternal_436.1;source_gene=hg002_chrY_paternal_436;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_436;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_436.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_436.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377224;alternative_source_transcripts=hg002_chrY_paternal_436.3,hg002_chrY_paternal_436.3;transcript_id=HG003_chrY_T0000627;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000627;transcript_name=hg002_chrY_paternal_436.1;gene_name=LOC105377224;ID=exon:HG003_chrY_T0000627:0;Name=LOC105377224;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20606479	20615491	.	+	.	source_transcript=hg002_chrY_paternal_436.3;source_transcript_name=hg002_chrY_paternal_436.1;source_gene=hg002_chrY_paternal_436;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_436;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_436.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_436.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377224;alternative_source_transcripts=hg002_chrY_paternal_436.3,hg002_chrY_paternal_436.3;transcript_id=HG003_chrY_T0000627;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000627;transcript_name=hg002_chrY_paternal_436.1;gene_name=LOC105377224;ID=intron:HG003_chrY_T0000627:0;Name=LOC105377224;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20615492	20615580	.	+	.	source_transcript=hg002_chrY_paternal_436.3;source_transcript_name=hg002_chrY_paternal_436.1;source_gene=hg002_chrY_paternal_436;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_436;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_436.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_436.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377224;alternative_source_transcripts=hg002_chrY_paternal_436.3,hg002_chrY_paternal_436.3;transcript_id=HG003_chrY_T0000627;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000627;transcript_name=hg002_chrY_paternal_436.1;gene_name=LOC105377224;ID=exon:HG003_chrY_T0000627:1;Name=LOC105377224;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20615581	20615969	.	+	.	source_transcript=hg002_chrY_paternal_436.3;source_transcript_name=hg002_chrY_paternal_436.1;source_gene=hg002_chrY_paternal_436;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_436;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_436.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_436.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377224;alternative_source_transcripts=hg002_chrY_paternal_436.3,hg002_chrY_paternal_436.3;transcript_id=HG003_chrY_T0000627;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000627;transcript_name=hg002_chrY_paternal_436.1;gene_name=LOC105377224;ID=intron:HG003_chrY_T0000627:1;Name=LOC105377224;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20615970	20616089	.	+	.	source_transcript=hg002_chrY_paternal_436.3;source_transcript_name=hg002_chrY_paternal_436.1;source_gene=hg002_chrY_paternal_436;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_436;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_436.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_436.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377224;alternative_source_transcripts=hg002_chrY_paternal_436.3,hg002_chrY_paternal_436.3;transcript_id=HG003_chrY_T0000627;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000627;transcript_name=hg002_chrY_paternal_436.1;gene_name=LOC105377224;ID=exon:HG003_chrY_T0000627:2;Name=LOC105377224;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20616090	20617407	.	+	.	source_transcript=hg002_chrY_paternal_436.3;source_transcript_name=hg002_chrY_paternal_436.1;source_gene=hg002_chrY_paternal_436;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_436;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_436.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_436.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377224;alternative_source_transcripts=hg002_chrY_paternal_436.3,hg002_chrY_paternal_436.3;transcript_id=HG003_chrY_T0000627;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000627;transcript_name=hg002_chrY_paternal_436.1;gene_name=LOC105377224;ID=intron:HG003_chrY_T0000627:2;Name=LOC105377224;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20617408	20618214	.	+	.	source_transcript=hg002_chrY_paternal_436.3;source_transcript_name=hg002_chrY_paternal_436.1;source_gene=hg002_chrY_paternal_436;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_436;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_436.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_436.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377224;alternative_source_transcripts=hg002_chrY_paternal_436.3,hg002_chrY_paternal_436.3;transcript_id=HG003_chrY_T0000627;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000627;transcript_name=hg002_chrY_paternal_436.1;gene_name=LOC105377224;ID=exon:HG003_chrY_T0000627:3;Name=LOC105377224;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	21295095	21348644	.	-	.	source_gene_common_name=TTTY10;source_gene=hg002_chrY_paternal_441;alternative_source_transcripts=hg002_chrY_paternal_441.1,hg002_chrY_paternal_441.1;gene_id=HG003_chrY_G0000225;gene_biotype=lncRNA;gene_name=TTTY10;gene_sources=liftoff;ID=HG003_chrY_G0000225;Name=TTTY10
HG003_chrY	CAT	transcript	21295095	21348644	1000	-	.	source_transcript=hg002_chrY_paternal_441.1;source_transcript_name=hg002_chrY_paternal_441.1;source_gene=hg002_chrY_paternal_441;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_441;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_441.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_441.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=hg002_chrY_paternal_441.1,hg002_chrY_paternal_441.1;transcript_id=HG003_chrY_T0000628;gene_id=HG003_chrY_G0000225;Parent=HG003_chrY_G0000225;transcript_name=hg002_chrY_paternal_441.1;gene_name=TTTY10;ID=HG003_chrY_T0000628;Name=TTTY10
HG003_chrY	CAT	exon	21295095	21295249	.	-	.	source_transcript=hg002_chrY_paternal_441.1;source_transcript_name=hg002_chrY_paternal_441.1;source_gene=hg002_chrY_paternal_441;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_441;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_441.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_441.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=hg002_chrY_paternal_441.1,hg002_chrY_paternal_441.1;transcript_id=HG003_chrY_T0000628;gene_id=HG003_chrY_G0000225;Parent=HG003_chrY_T0000628;transcript_name=hg002_chrY_paternal_441.1;gene_name=TTTY10;ID=exon:HG003_chrY_T0000628:0;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21295250	21295854	.	-	.	source_transcript=hg002_chrY_paternal_441.1;source_transcript_name=hg002_chrY_paternal_441.1;source_gene=hg002_chrY_paternal_441;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_441;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_441.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_441.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=hg002_chrY_paternal_441.1,hg002_chrY_paternal_441.1;transcript_id=HG003_chrY_T0000628;gene_id=HG003_chrY_G0000225;Parent=HG003_chrY_T0000628;transcript_name=hg002_chrY_paternal_441.1;gene_name=TTTY10;ID=intron:HG003_chrY_T0000628:0;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21295855	21296094	.	-	.	source_transcript=hg002_chrY_paternal_441.1;source_transcript_name=hg002_chrY_paternal_441.1;source_gene=hg002_chrY_paternal_441;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_441;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_441.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_441.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=hg002_chrY_paternal_441.1,hg002_chrY_paternal_441.1;transcript_id=HG003_chrY_T0000628;gene_id=HG003_chrY_G0000225;Parent=HG003_chrY_T0000628;transcript_name=hg002_chrY_paternal_441.1;gene_name=TTTY10;ID=exon:HG003_chrY_T0000628:1;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21296095	21297615	.	-	.	source_transcript=hg002_chrY_paternal_441.1;source_transcript_name=hg002_chrY_paternal_441.1;source_gene=hg002_chrY_paternal_441;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_441;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_441.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_441.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=hg002_chrY_paternal_441.1,hg002_chrY_paternal_441.1;transcript_id=HG003_chrY_T0000628;gene_id=HG003_chrY_G0000225;Parent=HG003_chrY_T0000628;transcript_name=hg002_chrY_paternal_441.1;gene_name=TTTY10;ID=intron:HG003_chrY_T0000628:1;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21297616	21297675	.	-	.	source_transcript=hg002_chrY_paternal_441.1;source_transcript_name=hg002_chrY_paternal_441.1;source_gene=hg002_chrY_paternal_441;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_441;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_441.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_441.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=hg002_chrY_paternal_441.1,hg002_chrY_paternal_441.1;transcript_id=HG003_chrY_T0000628;gene_id=HG003_chrY_G0000225;Parent=HG003_chrY_T0000628;transcript_name=hg002_chrY_paternal_441.1;gene_name=TTTY10;ID=exon:HG003_chrY_T0000628:2;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21297676	21299298	.	-	.	source_transcript=hg002_chrY_paternal_441.1;source_transcript_name=hg002_chrY_paternal_441.1;source_gene=hg002_chrY_paternal_441;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_441;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_441.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_441.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=hg002_chrY_paternal_441.1,hg002_chrY_paternal_441.1;transcript_id=HG003_chrY_T0000628;gene_id=HG003_chrY_G0000225;Parent=HG003_chrY_T0000628;transcript_name=hg002_chrY_paternal_441.1;gene_name=TTTY10;ID=intron:HG003_chrY_T0000628:2;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21299299	21299408	.	-	.	source_transcript=hg002_chrY_paternal_441.1;source_transcript_name=hg002_chrY_paternal_441.1;source_gene=hg002_chrY_paternal_441;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_441;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_441.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_441.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=hg002_chrY_paternal_441.1,hg002_chrY_paternal_441.1;transcript_id=HG003_chrY_T0000628;gene_id=HG003_chrY_G0000225;Parent=HG003_chrY_T0000628;transcript_name=hg002_chrY_paternal_441.1;gene_name=TTTY10;ID=exon:HG003_chrY_T0000628:3;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21299409	21336767	.	-	.	source_transcript=hg002_chrY_paternal_441.1;source_transcript_name=hg002_chrY_paternal_441.1;source_gene=hg002_chrY_paternal_441;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_441;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_441.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_441.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=hg002_chrY_paternal_441.1,hg002_chrY_paternal_441.1;transcript_id=HG003_chrY_T0000628;gene_id=HG003_chrY_G0000225;Parent=HG003_chrY_T0000628;transcript_name=hg002_chrY_paternal_441.1;gene_name=TTTY10;ID=intron:HG003_chrY_T0000628:3;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21336768	21336872	.	-	.	source_transcript=hg002_chrY_paternal_441.1;source_transcript_name=hg002_chrY_paternal_441.1;source_gene=hg002_chrY_paternal_441;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_441;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_441.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_441.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=hg002_chrY_paternal_441.1,hg002_chrY_paternal_441.1;transcript_id=HG003_chrY_T0000628;gene_id=HG003_chrY_G0000225;Parent=HG003_chrY_T0000628;transcript_name=hg002_chrY_paternal_441.1;gene_name=TTTY10;ID=exon:HG003_chrY_T0000628:4;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21336873	21347686	.	-	.	source_transcript=hg002_chrY_paternal_441.1;source_transcript_name=hg002_chrY_paternal_441.1;source_gene=hg002_chrY_paternal_441;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_441;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_441.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_441.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=hg002_chrY_paternal_441.1,hg002_chrY_paternal_441.1;transcript_id=HG003_chrY_T0000628;gene_id=HG003_chrY_G0000225;Parent=HG003_chrY_T0000628;transcript_name=hg002_chrY_paternal_441.1;gene_name=TTTY10;ID=intron:HG003_chrY_T0000628:4;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21347687	21348644	.	-	.	source_transcript=hg002_chrY_paternal_441.1;source_transcript_name=hg002_chrY_paternal_441.1;source_gene=hg002_chrY_paternal_441;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_441;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_441.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_441.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=hg002_chrY_paternal_441.1,hg002_chrY_paternal_441.1;transcript_id=HG003_chrY_T0000628;gene_id=HG003_chrY_G0000225;Parent=HG003_chrY_T0000628;transcript_name=hg002_chrY_paternal_441.1;gene_name=TTTY10;ID=exon:HG003_chrY_T0000628:5;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	21405193	21422572	.	+	.	source_gene_common_name=EIF1AY;source_gene=hg002_chrY_paternal_443;alternative_source_transcripts=hg002_chrY_paternal_443.1,hg002_chrY_paternal_443.1;gene_id=HG003_chrY_G0000226;gene_biotype=protein_coding;gene_name=EIF1AY;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000226;Name=EIF1AY
HG003_chrY	CAT	transcript	21405193	21422572	100	+	.	source_transcript=hg002_chrY_paternal_443.1;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.1,hg002_chrY_paternal_443.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000629;gene_id=HG003_chrY_G0000226;Parent=HG003_chrY_G0000226;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=HG003_chrY_T0000629;Name=EIF1AY
HG003_chrY	CAT	exon	21405193	21405304	.	+	.	source_transcript=hg002_chrY_paternal_443.1;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.1,hg002_chrY_paternal_443.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000629;gene_id=HG003_chrY_G0000226;Parent=HG003_chrY_T0000629;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=exon:HG003_chrY_T0000629:0;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	21405289	21405304	.	+	0	source_transcript=hg002_chrY_paternal_443.1;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.1,hg002_chrY_paternal_443.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000629;gene_id=HG003_chrY_G0000226;Parent=HG003_chrY_T0000629;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=CDS:HG003_chrY_T0000629:0;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	21405289	21405291	.	+	0	source_transcript=hg002_chrY_paternal_443.1;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.1,hg002_chrY_paternal_443.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000629;gene_id=HG003_chrY_G0000226;Parent=HG003_chrY_T0000629;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=start_codon:HG003_chrY_T0000629;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21405305	21409024	.	+	.	source_transcript=hg002_chrY_paternal_443.1;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.1,hg002_chrY_paternal_443.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000629;gene_id=HG003_chrY_G0000226;Parent=HG003_chrY_T0000629;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=intron:HG003_chrY_T0000629:0;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21409025	21409108	.	+	.	source_transcript=hg002_chrY_paternal_443.1;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.1,hg002_chrY_paternal_443.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000629;gene_id=HG003_chrY_G0000226;Parent=HG003_chrY_T0000629;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=exon:HG003_chrY_T0000629:1;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	21409025	21409108	.	+	2	source_transcript=hg002_chrY_paternal_443.1;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.1,hg002_chrY_paternal_443.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000629;gene_id=HG003_chrY_G0000226;Parent=HG003_chrY_T0000629;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=CDS:HG003_chrY_T0000629:1;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21409109	21412006	.	+	.	source_transcript=hg002_chrY_paternal_443.1;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.1,hg002_chrY_paternal_443.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000629;gene_id=HG003_chrY_G0000226;Parent=HG003_chrY_T0000629;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=intron:HG003_chrY_T0000629:1;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21412007	21412110	.	+	.	source_transcript=hg002_chrY_paternal_443.1;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.1,hg002_chrY_paternal_443.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000629;gene_id=HG003_chrY_G0000226;Parent=HG003_chrY_T0000629;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=exon:HG003_chrY_T0000629:2;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	21412007	21412110	.	+	2	source_transcript=hg002_chrY_paternal_443.1;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.1,hg002_chrY_paternal_443.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000629;gene_id=HG003_chrY_G0000226;Parent=HG003_chrY_T0000629;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=CDS:HG003_chrY_T0000629:2;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21412111	21417441	.	+	.	source_transcript=hg002_chrY_paternal_443.1;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.1,hg002_chrY_paternal_443.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000629;gene_id=HG003_chrY_G0000226;Parent=HG003_chrY_T0000629;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=intron:HG003_chrY_T0000629:2;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21417442	21417523	.	+	.	source_transcript=hg002_chrY_paternal_443.1;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.1,hg002_chrY_paternal_443.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000629;gene_id=HG003_chrY_G0000226;Parent=HG003_chrY_T0000629;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=exon:HG003_chrY_T0000629:3;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	21417442	21417523	.	+	0	source_transcript=hg002_chrY_paternal_443.1;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.1,hg002_chrY_paternal_443.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000629;gene_id=HG003_chrY_G0000226;Parent=HG003_chrY_T0000629;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=CDS:HG003_chrY_T0000629:3;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21417524	21418901	.	+	.	source_transcript=hg002_chrY_paternal_443.1;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.1,hg002_chrY_paternal_443.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000629;gene_id=HG003_chrY_G0000226;Parent=HG003_chrY_T0000629;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=intron:HG003_chrY_T0000629:3;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21418902	21418993	.	+	.	source_transcript=hg002_chrY_paternal_443.1;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.1,hg002_chrY_paternal_443.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000629;gene_id=HG003_chrY_G0000226;Parent=HG003_chrY_T0000629;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=exon:HG003_chrY_T0000629:4;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	21418902	21418993	.	+	2	source_transcript=hg002_chrY_paternal_443.1;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.1,hg002_chrY_paternal_443.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000629;gene_id=HG003_chrY_G0000226;Parent=HG003_chrY_T0000629;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=CDS:HG003_chrY_T0000629:4;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21418994	21421758	.	+	.	source_transcript=hg002_chrY_paternal_443.1;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.1,hg002_chrY_paternal_443.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000629;gene_id=HG003_chrY_G0000226;Parent=HG003_chrY_T0000629;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=intron:HG003_chrY_T0000629:4;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21421759	21422572	.	+	.	source_transcript=hg002_chrY_paternal_443.1;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.1,hg002_chrY_paternal_443.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000629;gene_id=HG003_chrY_G0000226;Parent=HG003_chrY_T0000629;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=exon:HG003_chrY_T0000629:5;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	21421759	21421764	.	+	0	source_transcript=hg002_chrY_paternal_443.1;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.1,hg002_chrY_paternal_443.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000629;gene_id=HG003_chrY_G0000226;Parent=HG003_chrY_T0000629;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=CDS:HG003_chrY_T0000629:5;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	21421762	21421764	.	+	0	source_transcript=hg002_chrY_paternal_443.1;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.1,hg002_chrY_paternal_443.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000629;gene_id=HG003_chrY_G0000226;Parent=HG003_chrY_T0000629;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=stop_codon:HG003_chrY_T0000629;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	21405193	21422572	100	+	.	source_transcript=hg002_chrY_paternal_443.2;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.2,hg002_chrY_paternal_443.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000630;gene_id=HG003_chrY_G0000226;Parent=HG003_chrY_G0000226;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=HG003_chrY_T0000630;Name=EIF1AY
HG003_chrY	CAT	exon	21405193	21405304	.	+	.	source_transcript=hg002_chrY_paternal_443.2;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.2,hg002_chrY_paternal_443.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000630;gene_id=HG003_chrY_G0000226;Parent=HG003_chrY_T0000630;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=exon:HG003_chrY_T0000630:0;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	21405289	21405304	.	+	0	source_transcript=hg002_chrY_paternal_443.2;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.2,hg002_chrY_paternal_443.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000630;gene_id=HG003_chrY_G0000226;Parent=HG003_chrY_T0000630;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=CDS:HG003_chrY_T0000630:0;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	21405289	21405291	.	+	0	source_transcript=hg002_chrY_paternal_443.2;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.2,hg002_chrY_paternal_443.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000630;gene_id=HG003_chrY_G0000226;Parent=HG003_chrY_T0000630;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=start_codon:HG003_chrY_T0000630;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21405305	21409024	.	+	.	source_transcript=hg002_chrY_paternal_443.2;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.2,hg002_chrY_paternal_443.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000630;gene_id=HG003_chrY_G0000226;Parent=HG003_chrY_T0000630;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=intron:HG003_chrY_T0000630:0;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21409025	21409108	.	+	.	source_transcript=hg002_chrY_paternal_443.2;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.2,hg002_chrY_paternal_443.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000630;gene_id=HG003_chrY_G0000226;Parent=HG003_chrY_T0000630;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=exon:HG003_chrY_T0000630:1;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	21409025	21409108	.	+	2	source_transcript=hg002_chrY_paternal_443.2;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.2,hg002_chrY_paternal_443.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000630;gene_id=HG003_chrY_G0000226;Parent=HG003_chrY_T0000630;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=CDS:HG003_chrY_T0000630:1;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21409109	21412006	.	+	.	source_transcript=hg002_chrY_paternal_443.2;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.2,hg002_chrY_paternal_443.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000630;gene_id=HG003_chrY_G0000226;Parent=HG003_chrY_T0000630;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=intron:HG003_chrY_T0000630:1;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21412007	21412110	.	+	.	source_transcript=hg002_chrY_paternal_443.2;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.2,hg002_chrY_paternal_443.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000630;gene_id=HG003_chrY_G0000226;Parent=HG003_chrY_T0000630;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=exon:HG003_chrY_T0000630:2;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	21412007	21412110	.	+	2	source_transcript=hg002_chrY_paternal_443.2;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.2,hg002_chrY_paternal_443.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000630;gene_id=HG003_chrY_G0000226;Parent=HG003_chrY_T0000630;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=CDS:HG003_chrY_T0000630:2;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21412111	21413891	.	+	.	source_transcript=hg002_chrY_paternal_443.2;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.2,hg002_chrY_paternal_443.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000630;gene_id=HG003_chrY_G0000226;Parent=HG003_chrY_T0000630;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=intron:HG003_chrY_T0000630:2;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21413892	21413942	.	+	.	source_transcript=hg002_chrY_paternal_443.2;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.2,hg002_chrY_paternal_443.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000630;gene_id=HG003_chrY_G0000226;Parent=HG003_chrY_T0000630;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=exon:HG003_chrY_T0000630:3;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	21413892	21413942	.	+	0	source_transcript=hg002_chrY_paternal_443.2;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.2,hg002_chrY_paternal_443.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000630;gene_id=HG003_chrY_G0000226;Parent=HG003_chrY_T0000630;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=CDS:HG003_chrY_T0000630:3;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21413943	21417441	.	+	.	source_transcript=hg002_chrY_paternal_443.2;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.2,hg002_chrY_paternal_443.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000630;gene_id=HG003_chrY_G0000226;Parent=HG003_chrY_T0000630;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=intron:HG003_chrY_T0000630:3;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21417442	21417523	.	+	.	source_transcript=hg002_chrY_paternal_443.2;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.2,hg002_chrY_paternal_443.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000630;gene_id=HG003_chrY_G0000226;Parent=HG003_chrY_T0000630;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=exon:HG003_chrY_T0000630:4;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	21417442	21417523	.	+	0	source_transcript=hg002_chrY_paternal_443.2;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.2,hg002_chrY_paternal_443.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000630;gene_id=HG003_chrY_G0000226;Parent=HG003_chrY_T0000630;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=CDS:HG003_chrY_T0000630:4;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21417524	21418901	.	+	.	source_transcript=hg002_chrY_paternal_443.2;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.2,hg002_chrY_paternal_443.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000630;gene_id=HG003_chrY_G0000226;Parent=HG003_chrY_T0000630;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=intron:HG003_chrY_T0000630:4;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21418902	21418993	.	+	.	source_transcript=hg002_chrY_paternal_443.2;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.2,hg002_chrY_paternal_443.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000630;gene_id=HG003_chrY_G0000226;Parent=HG003_chrY_T0000630;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=exon:HG003_chrY_T0000630:5;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	21418902	21418993	.	+	2	source_transcript=hg002_chrY_paternal_443.2;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.2,hg002_chrY_paternal_443.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000630;gene_id=HG003_chrY_G0000226;Parent=HG003_chrY_T0000630;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=CDS:HG003_chrY_T0000630:5;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21418994	21421758	.	+	.	source_transcript=hg002_chrY_paternal_443.2;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.2,hg002_chrY_paternal_443.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000630;gene_id=HG003_chrY_G0000226;Parent=HG003_chrY_T0000630;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=intron:HG003_chrY_T0000630:5;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21421759	21422572	.	+	.	source_transcript=hg002_chrY_paternal_443.2;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.2,hg002_chrY_paternal_443.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000630;gene_id=HG003_chrY_G0000226;Parent=HG003_chrY_T0000630;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=exon:HG003_chrY_T0000630:6;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	21421759	21421764	.	+	0	source_transcript=hg002_chrY_paternal_443.2;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.2,hg002_chrY_paternal_443.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000630;gene_id=HG003_chrY_G0000226;Parent=HG003_chrY_T0000630;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=CDS:HG003_chrY_T0000630:6;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	21421762	21421764	.	+	0	source_transcript=hg002_chrY_paternal_443.2;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.2,hg002_chrY_paternal_443.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000630;gene_id=HG003_chrY_G0000226;Parent=HG003_chrY_T0000630;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=stop_codon:HG003_chrY_T0000630;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	21585539	21610464	.	+	.	source_gene_common_name=RPS4Y2;source_gene=hg002_chrY_paternal_446;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;gene_id=HG003_chrY_G0000227;gene_biotype=protein_coding;gene_name=RPS4Y2;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000227;Name=RPS4Y2
HG003_chrY	CAT	transcript	21585539	21610464	100	+	.	source_transcript=hg002_chrY_paternal_446.1;source_transcript_name=hg002_chrY_paternal_446.1;source_gene=hg002_chrY_paternal_446;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_446;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_446.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_446.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000631;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_G0000227;transcript_name=hg002_chrY_paternal_446.1;gene_name=RPS4Y2;ID=HG003_chrY_T0000631;Name=RPS4Y2
HG003_chrY	CAT	exon	21585539	21585597	.	+	.	source_transcript=hg002_chrY_paternal_446.1;source_transcript_name=hg002_chrY_paternal_446.1;source_gene=hg002_chrY_paternal_446;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_446;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_446.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_446.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000631;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000631;transcript_name=hg002_chrY_paternal_446.1;gene_name=RPS4Y2;ID=exon:HG003_chrY_T0000631:0;Name=RPS4Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	21585595	21585597	.	+	0	source_transcript=hg002_chrY_paternal_446.1;source_transcript_name=hg002_chrY_paternal_446.1;source_gene=hg002_chrY_paternal_446;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_446;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_446.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_446.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000631;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000631;transcript_name=hg002_chrY_paternal_446.1;gene_name=RPS4Y2;ID=CDS:HG003_chrY_T0000631:0;Name=RPS4Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	21585595	21585597	.	+	0	source_transcript=hg002_chrY_paternal_446.1;source_transcript_name=hg002_chrY_paternal_446.1;source_gene=hg002_chrY_paternal_446;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_446;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_446.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_446.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000631;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000631;transcript_name=hg002_chrY_paternal_446.1;gene_name=RPS4Y2;ID=start_codon:HG003_chrY_T0000631;Name=RPS4Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21585598	21586208	.	+	.	source_transcript=hg002_chrY_paternal_446.1;source_transcript_name=hg002_chrY_paternal_446.1;source_gene=hg002_chrY_paternal_446;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_446;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_446.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_446.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000631;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000631;transcript_name=hg002_chrY_paternal_446.1;gene_name=RPS4Y2;ID=intron:HG003_chrY_T0000631:0;Name=RPS4Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21586209	21586286	.	+	.	source_transcript=hg002_chrY_paternal_446.1;source_transcript_name=hg002_chrY_paternal_446.1;source_gene=hg002_chrY_paternal_446;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_446;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_446.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_446.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000631;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000631;transcript_name=hg002_chrY_paternal_446.1;gene_name=RPS4Y2;ID=exon:HG003_chrY_T0000631:1;Name=RPS4Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	21586209	21586286	.	+	0	source_transcript=hg002_chrY_paternal_446.1;source_transcript_name=hg002_chrY_paternal_446.1;source_gene=hg002_chrY_paternal_446;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_446;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_446.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_446.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000631;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000631;transcript_name=hg002_chrY_paternal_446.1;gene_name=RPS4Y2;ID=CDS:HG003_chrY_T0000631:1;Name=RPS4Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21586287	21589299	.	+	.	source_transcript=hg002_chrY_paternal_446.1;source_transcript_name=hg002_chrY_paternal_446.1;source_gene=hg002_chrY_paternal_446;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_446;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_446.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_446.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000631;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000631;transcript_name=hg002_chrY_paternal_446.1;gene_name=RPS4Y2;ID=intron:HG003_chrY_T0000631:1;Name=RPS4Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21589300	21589480	.	+	.	source_transcript=hg002_chrY_paternal_446.1;source_transcript_name=hg002_chrY_paternal_446.1;source_gene=hg002_chrY_paternal_446;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_446;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_446.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_446.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000631;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000631;transcript_name=hg002_chrY_paternal_446.1;gene_name=RPS4Y2;ID=exon:HG003_chrY_T0000631:2;Name=RPS4Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	21589300	21589480	.	+	0	source_transcript=hg002_chrY_paternal_446.1;source_transcript_name=hg002_chrY_paternal_446.1;source_gene=hg002_chrY_paternal_446;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_446;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_446.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_446.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000631;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000631;transcript_name=hg002_chrY_paternal_446.1;gene_name=RPS4Y2;ID=CDS:HG003_chrY_T0000631:2;Name=RPS4Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21589481	21590715	.	+	.	source_transcript=hg002_chrY_paternal_446.1;source_transcript_name=hg002_chrY_paternal_446.1;source_gene=hg002_chrY_paternal_446;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_446;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_446.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_446.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000631;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000631;transcript_name=hg002_chrY_paternal_446.1;gene_name=RPS4Y2;ID=intron:HG003_chrY_T0000631:2;Name=RPS4Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21590716	21590813	.	+	.	source_transcript=hg002_chrY_paternal_446.1;source_transcript_name=hg002_chrY_paternal_446.1;source_gene=hg002_chrY_paternal_446;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_446;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_446.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_446.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000631;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000631;transcript_name=hg002_chrY_paternal_446.1;gene_name=RPS4Y2;ID=exon:HG003_chrY_T0000631:3;Name=RPS4Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	21590716	21590813	.	+	2	source_transcript=hg002_chrY_paternal_446.1;source_transcript_name=hg002_chrY_paternal_446.1;source_gene=hg002_chrY_paternal_446;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_446;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_446.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_446.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000631;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000631;transcript_name=hg002_chrY_paternal_446.1;gene_name=RPS4Y2;ID=CDS:HG003_chrY_T0000631:3;Name=RPS4Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21590814	21598236	.	+	.	source_transcript=hg002_chrY_paternal_446.1;source_transcript_name=hg002_chrY_paternal_446.1;source_gene=hg002_chrY_paternal_446;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_446;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_446.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_446.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000631;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000631;transcript_name=hg002_chrY_paternal_446.1;gene_name=RPS4Y2;ID=intron:HG003_chrY_T0000631:3;Name=RPS4Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21598237	21598408	.	+	.	source_transcript=hg002_chrY_paternal_446.1;source_transcript_name=hg002_chrY_paternal_446.1;source_gene=hg002_chrY_paternal_446;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_446;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_446.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_446.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000631;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000631;transcript_name=hg002_chrY_paternal_446.1;gene_name=RPS4Y2;ID=exon:HG003_chrY_T0000631:4;Name=RPS4Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	21598237	21598408	.	+	0	source_transcript=hg002_chrY_paternal_446.1;source_transcript_name=hg002_chrY_paternal_446.1;source_gene=hg002_chrY_paternal_446;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_446;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_446.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_446.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000631;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000631;transcript_name=hg002_chrY_paternal_446.1;gene_name=RPS4Y2;ID=CDS:HG003_chrY_T0000631:4;Name=RPS4Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21598409	21608940	.	+	.	source_transcript=hg002_chrY_paternal_446.1;source_transcript_name=hg002_chrY_paternal_446.1;source_gene=hg002_chrY_paternal_446;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_446;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_446.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_446.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000631;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000631;transcript_name=hg002_chrY_paternal_446.1;gene_name=RPS4Y2;ID=intron:HG003_chrY_T0000631:4;Name=RPS4Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21608941	21609098	.	+	.	source_transcript=hg002_chrY_paternal_446.1;source_transcript_name=hg002_chrY_paternal_446.1;source_gene=hg002_chrY_paternal_446;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_446;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_446.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_446.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000631;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000631;transcript_name=hg002_chrY_paternal_446.1;gene_name=RPS4Y2;ID=exon:HG003_chrY_T0000631:5;Name=RPS4Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	21608941	21609098	.	+	2	source_transcript=hg002_chrY_paternal_446.1;source_transcript_name=hg002_chrY_paternal_446.1;source_gene=hg002_chrY_paternal_446;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_446;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_446.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_446.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000631;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000631;transcript_name=hg002_chrY_paternal_446.1;gene_name=RPS4Y2;ID=CDS:HG003_chrY_T0000631:5;Name=RPS4Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21609099	21610362	.	+	.	source_transcript=hg002_chrY_paternal_446.1;source_transcript_name=hg002_chrY_paternal_446.1;source_gene=hg002_chrY_paternal_446;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_446;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_446.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_446.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000631;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000631;transcript_name=hg002_chrY_paternal_446.1;gene_name=RPS4Y2;ID=intron:HG003_chrY_T0000631:5;Name=RPS4Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21610363	21610464	.	+	.	source_transcript=hg002_chrY_paternal_446.1;source_transcript_name=hg002_chrY_paternal_446.1;source_gene=hg002_chrY_paternal_446;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_446;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_446.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_446.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000631;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000631;transcript_name=hg002_chrY_paternal_446.1;gene_name=RPS4Y2;ID=exon:HG003_chrY_T0000631:6;Name=RPS4Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	21610363	21610464	.	+	0	source_transcript=hg002_chrY_paternal_446.1;source_transcript_name=hg002_chrY_paternal_446.1;source_gene=hg002_chrY_paternal_446;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_446;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_446.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_446.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000631;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000631;transcript_name=hg002_chrY_paternal_446.1;gene_name=RPS4Y2;ID=CDS:HG003_chrY_T0000631:6;Name=RPS4Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	21610462	21610464	.	+	0	source_transcript=hg002_chrY_paternal_446.1;source_transcript_name=hg002_chrY_paternal_446.1;source_gene=hg002_chrY_paternal_446;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_446;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_446.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_446.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000631;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000631;transcript_name=hg002_chrY_paternal_446.1;gene_name=RPS4Y2;ID=stop_codon:HG003_chrY_T0000631;Name=RPS4Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	21968111	22002443	.	+	.	source_gene_common_name=LOC105377225;source_gene=hg002_chrY_paternal_451;alternative_source_transcripts=hg002_chrY_paternal_451.1,hg002_chrY_paternal_451.1;gene_id=HG003_chrY_G0000228;gene_biotype=lncRNA;gene_name=LOC105377225;gene_sources=liftoff;ID=HG003_chrY_G0000228;Name=LOC105377225
HG003_chrY	CAT	transcript	21968111	21999688	1000	+	.	source_transcript=hg002_chrY_paternal_451.1;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.1,hg002_chrY_paternal_451.1;transcript_id=HG003_chrY_T0000632;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_G0000228;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=HG003_chrY_T0000632;Name=LOC105377225
HG003_chrY	CAT	exon	21968111	21968346	.	+	.	source_transcript=hg002_chrY_paternal_451.1;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.1,hg002_chrY_paternal_451.1;transcript_id=HG003_chrY_T0000632;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000632;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:HG003_chrY_T0000632:0;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21968347	21977656	.	+	.	source_transcript=hg002_chrY_paternal_451.1;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.1,hg002_chrY_paternal_451.1;transcript_id=HG003_chrY_T0000632;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000632;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:HG003_chrY_T0000632:0;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21977657	21977707	.	+	.	source_transcript=hg002_chrY_paternal_451.1;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.1,hg002_chrY_paternal_451.1;transcript_id=HG003_chrY_T0000632;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000632;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:HG003_chrY_T0000632:1;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21977708	21977899	.	+	.	source_transcript=hg002_chrY_paternal_451.1;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.1,hg002_chrY_paternal_451.1;transcript_id=HG003_chrY_T0000632;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000632;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:HG003_chrY_T0000632:1;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21977900	21977994	.	+	.	source_transcript=hg002_chrY_paternal_451.1;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.1,hg002_chrY_paternal_451.1;transcript_id=HG003_chrY_T0000632;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000632;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:HG003_chrY_T0000632:2;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21977995	21981061	.	+	.	source_transcript=hg002_chrY_paternal_451.1;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.1,hg002_chrY_paternal_451.1;transcript_id=HG003_chrY_T0000632;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000632;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:HG003_chrY_T0000632:2;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21981062	21981115	.	+	.	source_transcript=hg002_chrY_paternal_451.1;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.1,hg002_chrY_paternal_451.1;transcript_id=HG003_chrY_T0000632;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000632;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:HG003_chrY_T0000632:3;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21981116	21982311	.	+	.	source_transcript=hg002_chrY_paternal_451.1;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.1,hg002_chrY_paternal_451.1;transcript_id=HG003_chrY_T0000632;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000632;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:HG003_chrY_T0000632:3;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21982312	21982446	.	+	.	source_transcript=hg002_chrY_paternal_451.1;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.1,hg002_chrY_paternal_451.1;transcript_id=HG003_chrY_T0000632;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000632;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:HG003_chrY_T0000632:4;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21982447	21999424	.	+	.	source_transcript=hg002_chrY_paternal_451.1;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.1,hg002_chrY_paternal_451.1;transcript_id=HG003_chrY_T0000632;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000632;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:HG003_chrY_T0000632:4;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21999425	21999688	.	+	.	source_transcript=hg002_chrY_paternal_451.1;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.1,hg002_chrY_paternal_451.1;transcript_id=HG003_chrY_T0000632;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000632;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:HG003_chrY_T0000632:5;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	21968111	21999688	1000	+	.	source_transcript=hg002_chrY_paternal_451.2;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.2,hg002_chrY_paternal_451.2;transcript_id=HG003_chrY_T0000633;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_G0000228;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=HG003_chrY_T0000633;Name=LOC105377225
HG003_chrY	CAT	exon	21968111	21968346	.	+	.	source_transcript=hg002_chrY_paternal_451.2;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.2,hg002_chrY_paternal_451.2;transcript_id=HG003_chrY_T0000633;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000633;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:HG003_chrY_T0000633:0;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21968347	21977899	.	+	.	source_transcript=hg002_chrY_paternal_451.2;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.2,hg002_chrY_paternal_451.2;transcript_id=HG003_chrY_T0000633;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000633;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:HG003_chrY_T0000633:0;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21977900	21977994	.	+	.	source_transcript=hg002_chrY_paternal_451.2;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.2,hg002_chrY_paternal_451.2;transcript_id=HG003_chrY_T0000633;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000633;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:HG003_chrY_T0000633:1;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21977995	21981061	.	+	.	source_transcript=hg002_chrY_paternal_451.2;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.2,hg002_chrY_paternal_451.2;transcript_id=HG003_chrY_T0000633;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000633;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:HG003_chrY_T0000633:1;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21981062	21981115	.	+	.	source_transcript=hg002_chrY_paternal_451.2;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.2,hg002_chrY_paternal_451.2;transcript_id=HG003_chrY_T0000633;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000633;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:HG003_chrY_T0000633:2;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21981116	21982311	.	+	.	source_transcript=hg002_chrY_paternal_451.2;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.2,hg002_chrY_paternal_451.2;transcript_id=HG003_chrY_T0000633;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000633;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:HG003_chrY_T0000633:2;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21982312	21982446	.	+	.	source_transcript=hg002_chrY_paternal_451.2;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.2,hg002_chrY_paternal_451.2;transcript_id=HG003_chrY_T0000633;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000633;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:HG003_chrY_T0000633:3;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21982447	21999424	.	+	.	source_transcript=hg002_chrY_paternal_451.2;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.2,hg002_chrY_paternal_451.2;transcript_id=HG003_chrY_T0000633;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000633;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:HG003_chrY_T0000633:3;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21999425	21999688	.	+	.	source_transcript=hg002_chrY_paternal_451.2;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.2,hg002_chrY_paternal_451.2;transcript_id=HG003_chrY_T0000633;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000633;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:HG003_chrY_T0000633:4;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	21968111	21999688	1000	+	.	source_transcript=hg002_chrY_paternal_451.3;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.3,hg002_chrY_paternal_451.3;transcript_id=HG003_chrY_T0000634;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_G0000228;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=HG003_chrY_T0000634;Name=LOC105377225
HG003_chrY	CAT	exon	21968111	21968346	.	+	.	source_transcript=hg002_chrY_paternal_451.3;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.3,hg002_chrY_paternal_451.3;transcript_id=HG003_chrY_T0000634;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000634;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:HG003_chrY_T0000634:0;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21968347	21978022	.	+	.	source_transcript=hg002_chrY_paternal_451.3;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.3,hg002_chrY_paternal_451.3;transcript_id=HG003_chrY_T0000634;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000634;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:HG003_chrY_T0000634:0;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21978023	21978076	.	+	.	source_transcript=hg002_chrY_paternal_451.3;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.3,hg002_chrY_paternal_451.3;transcript_id=HG003_chrY_T0000634;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000634;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:HG003_chrY_T0000634:1;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21978077	21981061	.	+	.	source_transcript=hg002_chrY_paternal_451.3;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.3,hg002_chrY_paternal_451.3;transcript_id=HG003_chrY_T0000634;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000634;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:HG003_chrY_T0000634:1;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21981062	21981115	.	+	.	source_transcript=hg002_chrY_paternal_451.3;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.3,hg002_chrY_paternal_451.3;transcript_id=HG003_chrY_T0000634;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000634;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:HG003_chrY_T0000634:2;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21981116	21982311	.	+	.	source_transcript=hg002_chrY_paternal_451.3;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.3,hg002_chrY_paternal_451.3;transcript_id=HG003_chrY_T0000634;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000634;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:HG003_chrY_T0000634:2;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21982312	21982446	.	+	.	source_transcript=hg002_chrY_paternal_451.3;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.3,hg002_chrY_paternal_451.3;transcript_id=HG003_chrY_T0000634;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000634;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:HG003_chrY_T0000634:3;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21982447	21999424	.	+	.	source_transcript=hg002_chrY_paternal_451.3;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.3,hg002_chrY_paternal_451.3;transcript_id=HG003_chrY_T0000634;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000634;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:HG003_chrY_T0000634:3;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21999425	21999688	.	+	.	source_transcript=hg002_chrY_paternal_451.3;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.3,hg002_chrY_paternal_451.3;transcript_id=HG003_chrY_T0000634;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000634;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:HG003_chrY_T0000634:4;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	21968111	22002443	1000	+	.	source_transcript=hg002_chrY_paternal_451.4;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.4,hg002_chrY_paternal_451.4;transcript_id=HG003_chrY_T0000635;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_G0000228;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=HG003_chrY_T0000635;Name=LOC105377225
HG003_chrY	CAT	exon	21968111	21968346	.	+	.	source_transcript=hg002_chrY_paternal_451.4;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.4,hg002_chrY_paternal_451.4;transcript_id=HG003_chrY_T0000635;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000635;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:HG003_chrY_T0000635:0;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21968347	21974260	.	+	.	source_transcript=hg002_chrY_paternal_451.4;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.4,hg002_chrY_paternal_451.4;transcript_id=HG003_chrY_T0000635;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000635;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:HG003_chrY_T0000635:0;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21974261	21974352	.	+	.	source_transcript=hg002_chrY_paternal_451.4;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.4,hg002_chrY_paternal_451.4;transcript_id=HG003_chrY_T0000635;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000635;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:HG003_chrY_T0000635:1;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21974353	21977656	.	+	.	source_transcript=hg002_chrY_paternal_451.4;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.4,hg002_chrY_paternal_451.4;transcript_id=HG003_chrY_T0000635;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000635;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:HG003_chrY_T0000635:1;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21977657	21977707	.	+	.	source_transcript=hg002_chrY_paternal_451.4;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.4,hg002_chrY_paternal_451.4;transcript_id=HG003_chrY_T0000635;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000635;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:HG003_chrY_T0000635:2;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21977708	21977899	.	+	.	source_transcript=hg002_chrY_paternal_451.4;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.4,hg002_chrY_paternal_451.4;transcript_id=HG003_chrY_T0000635;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000635;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:HG003_chrY_T0000635:2;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21977900	21977994	.	+	.	source_transcript=hg002_chrY_paternal_451.4;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.4,hg002_chrY_paternal_451.4;transcript_id=HG003_chrY_T0000635;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000635;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:HG003_chrY_T0000635:3;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21977995	21981061	.	+	.	source_transcript=hg002_chrY_paternal_451.4;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.4,hg002_chrY_paternal_451.4;transcript_id=HG003_chrY_T0000635;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000635;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:HG003_chrY_T0000635:3;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21981062	21981115	.	+	.	source_transcript=hg002_chrY_paternal_451.4;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.4,hg002_chrY_paternal_451.4;transcript_id=HG003_chrY_T0000635;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000635;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:HG003_chrY_T0000635:4;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21981116	21982311	.	+	.	source_transcript=hg002_chrY_paternal_451.4;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.4,hg002_chrY_paternal_451.4;transcript_id=HG003_chrY_T0000635;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000635;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:HG003_chrY_T0000635:4;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21982312	21982446	.	+	.	source_transcript=hg002_chrY_paternal_451.4;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.4,hg002_chrY_paternal_451.4;transcript_id=HG003_chrY_T0000635;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000635;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:HG003_chrY_T0000635:5;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21982447	21999424	.	+	.	source_transcript=hg002_chrY_paternal_451.4;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.4,hg002_chrY_paternal_451.4;transcript_id=HG003_chrY_T0000635;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000635;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:HG003_chrY_T0000635:5;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21999425	22002443	.	+	.	source_transcript=hg002_chrY_paternal_451.4;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.4,hg002_chrY_paternal_451.4;transcript_id=HG003_chrY_T0000635;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000635;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:HG003_chrY_T0000635:6;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	21973520	21999688	1000	+	.	source_transcript=hg002_chrY_paternal_451.5;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.5,hg002_chrY_paternal_451.5;transcript_id=HG003_chrY_T0000636;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_G0000228;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=HG003_chrY_T0000636;Name=LOC105377225
HG003_chrY	CAT	exon	21973520	21977707	.	+	.	source_transcript=hg002_chrY_paternal_451.5;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.5,hg002_chrY_paternal_451.5;transcript_id=HG003_chrY_T0000636;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000636;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:HG003_chrY_T0000636:0;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21977708	21977899	.	+	.	source_transcript=hg002_chrY_paternal_451.5;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.5,hg002_chrY_paternal_451.5;transcript_id=HG003_chrY_T0000636;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000636;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:HG003_chrY_T0000636:0;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21977900	21978076	.	+	.	source_transcript=hg002_chrY_paternal_451.5;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.5,hg002_chrY_paternal_451.5;transcript_id=HG003_chrY_T0000636;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000636;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:HG003_chrY_T0000636:1;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21978077	21981061	.	+	.	source_transcript=hg002_chrY_paternal_451.5;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.5,hg002_chrY_paternal_451.5;transcript_id=HG003_chrY_T0000636;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000636;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:HG003_chrY_T0000636:1;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21981062	21981115	.	+	.	source_transcript=hg002_chrY_paternal_451.5;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.5,hg002_chrY_paternal_451.5;transcript_id=HG003_chrY_T0000636;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000636;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:HG003_chrY_T0000636:2;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21981116	21982311	.	+	.	source_transcript=hg002_chrY_paternal_451.5;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.5,hg002_chrY_paternal_451.5;transcript_id=HG003_chrY_T0000636;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000636;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:HG003_chrY_T0000636:2;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21982312	21982446	.	+	.	source_transcript=hg002_chrY_paternal_451.5;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.5,hg002_chrY_paternal_451.5;transcript_id=HG003_chrY_T0000636;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000636;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:HG003_chrY_T0000636:3;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21982447	21999424	.	+	.	source_transcript=hg002_chrY_paternal_451.5;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.5,hg002_chrY_paternal_451.5;transcript_id=HG003_chrY_T0000636;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000636;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:HG003_chrY_T0000636:3;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21999425	21999688	.	+	.	source_transcript=hg002_chrY_paternal_451.5;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.5,hg002_chrY_paternal_451.5;transcript_id=HG003_chrY_T0000636;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000636;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:HG003_chrY_T0000636:4;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	21973520	21999688	1000	+	.	source_transcript=hg002_chrY_paternal_451.6;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.6;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.6,hg002_chrY_paternal_451.6;transcript_id=HG003_chrY_T0000637;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_G0000228;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=HG003_chrY_T0000637;Name=LOC105377225
HG003_chrY	CAT	exon	21973520	21977707	.	+	.	source_transcript=hg002_chrY_paternal_451.6;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.6,hg002_chrY_paternal_451.6;transcript_id=HG003_chrY_T0000637;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000637;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:HG003_chrY_T0000637:0;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21977708	21978022	.	+	.	source_transcript=hg002_chrY_paternal_451.6;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.6,hg002_chrY_paternal_451.6;transcript_id=HG003_chrY_T0000637;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000637;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:HG003_chrY_T0000637:0;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21978023	21978076	.	+	.	source_transcript=hg002_chrY_paternal_451.6;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.6,hg002_chrY_paternal_451.6;transcript_id=HG003_chrY_T0000637;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000637;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:HG003_chrY_T0000637:1;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21978077	21981061	.	+	.	source_transcript=hg002_chrY_paternal_451.6;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.6,hg002_chrY_paternal_451.6;transcript_id=HG003_chrY_T0000637;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000637;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:HG003_chrY_T0000637:1;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21981062	21981115	.	+	.	source_transcript=hg002_chrY_paternal_451.6;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.6,hg002_chrY_paternal_451.6;transcript_id=HG003_chrY_T0000637;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000637;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:HG003_chrY_T0000637:2;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21981116	21982311	.	+	.	source_transcript=hg002_chrY_paternal_451.6;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.6,hg002_chrY_paternal_451.6;transcript_id=HG003_chrY_T0000637;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000637;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:HG003_chrY_T0000637:2;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21982312	21982446	.	+	.	source_transcript=hg002_chrY_paternal_451.6;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.6,hg002_chrY_paternal_451.6;transcript_id=HG003_chrY_T0000637;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000637;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:HG003_chrY_T0000637:3;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21982447	21999424	.	+	.	source_transcript=hg002_chrY_paternal_451.6;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.6,hg002_chrY_paternal_451.6;transcript_id=HG003_chrY_T0000637;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000637;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:HG003_chrY_T0000637:3;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21999425	21999688	.	+	.	source_transcript=hg002_chrY_paternal_451.6;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.6,hg002_chrY_paternal_451.6;transcript_id=HG003_chrY_T0000637;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000637;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:HG003_chrY_T0000637:4;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	21973520	21999688	1000	+	.	source_transcript=hg002_chrY_paternal_451.7;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.7;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.7,hg002_chrY_paternal_451.7;transcript_id=HG003_chrY_T0000638;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_G0000228;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=HG003_chrY_T0000638;Name=LOC105377225
HG003_chrY	CAT	exon	21973520	21977707	.	+	.	source_transcript=hg002_chrY_paternal_451.7;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.7,hg002_chrY_paternal_451.7;transcript_id=HG003_chrY_T0000638;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000638;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:HG003_chrY_T0000638:0;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21977708	21977899	.	+	.	source_transcript=hg002_chrY_paternal_451.7;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.7,hg002_chrY_paternal_451.7;transcript_id=HG003_chrY_T0000638;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000638;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:HG003_chrY_T0000638:0;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21977900	21978076	.	+	.	source_transcript=hg002_chrY_paternal_451.7;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.7,hg002_chrY_paternal_451.7;transcript_id=HG003_chrY_T0000638;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000638;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:HG003_chrY_T0000638:1;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21978077	21981061	.	+	.	source_transcript=hg002_chrY_paternal_451.7;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.7,hg002_chrY_paternal_451.7;transcript_id=HG003_chrY_T0000638;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000638;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:HG003_chrY_T0000638:1;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21981062	21981115	.	+	.	source_transcript=hg002_chrY_paternal_451.7;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.7,hg002_chrY_paternal_451.7;transcript_id=HG003_chrY_T0000638;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000638;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:HG003_chrY_T0000638:2;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21981116	21982152	.	+	.	source_transcript=hg002_chrY_paternal_451.7;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.7,hg002_chrY_paternal_451.7;transcript_id=HG003_chrY_T0000638;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000638;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:HG003_chrY_T0000638:2;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21982153	21982244	.	+	.	source_transcript=hg002_chrY_paternal_451.7;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.7,hg002_chrY_paternal_451.7;transcript_id=HG003_chrY_T0000638;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000638;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:HG003_chrY_T0000638:3;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21982245	21999424	.	+	.	source_transcript=hg002_chrY_paternal_451.7;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.7,hg002_chrY_paternal_451.7;transcript_id=HG003_chrY_T0000638;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000638;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:HG003_chrY_T0000638:3;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21999425	21999688	.	+	.	source_transcript=hg002_chrY_paternal_451.7;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.7,hg002_chrY_paternal_451.7;transcript_id=HG003_chrY_T0000638;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000638;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:HG003_chrY_T0000638:4;Name=LOC105377225;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22057606	22082843	.	+	.	source_gene_common_name=LOC107987346;source_gene=hg002_chrY_paternal_453;alternative_source_transcripts=hg002_chrY_paternal_453.1,hg002_chrY_paternal_453.1;gene_id=HG003_chrY_G0000229;gene_biotype=lncRNA;gene_name=LOC107987346;gene_sources=liftoff;ID=HG003_chrY_G0000229;Name=LOC107987346
HG003_chrY	CAT	transcript	22057606	22082843	1000	+	.	source_transcript=hg002_chrY_paternal_453.1;source_transcript_name=hg002_chrY_paternal_453.1;source_gene=hg002_chrY_paternal_453;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_453;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_453.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_453.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987346;alternative_source_transcripts=hg002_chrY_paternal_453.1,hg002_chrY_paternal_453.1;transcript_id=HG003_chrY_T0000639;gene_id=HG003_chrY_G0000229;Parent=HG003_chrY_G0000229;transcript_name=hg002_chrY_paternal_453.1;gene_name=LOC107987346;ID=HG003_chrY_T0000639;Name=LOC107987346
HG003_chrY	CAT	exon	22057606	22057643	.	+	.	source_transcript=hg002_chrY_paternal_453.1;source_transcript_name=hg002_chrY_paternal_453.1;source_gene=hg002_chrY_paternal_453;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_453;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_453.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_453.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987346;alternative_source_transcripts=hg002_chrY_paternal_453.1,hg002_chrY_paternal_453.1;transcript_id=HG003_chrY_T0000639;gene_id=HG003_chrY_G0000229;Parent=HG003_chrY_T0000639;transcript_name=hg002_chrY_paternal_453.1;gene_name=LOC107987346;ID=exon:HG003_chrY_T0000639:0;Name=LOC107987346;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22057644	22057820	.	+	.	source_transcript=hg002_chrY_paternal_453.1;source_transcript_name=hg002_chrY_paternal_453.1;source_gene=hg002_chrY_paternal_453;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_453;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_453.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_453.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987346;alternative_source_transcripts=hg002_chrY_paternal_453.1,hg002_chrY_paternal_453.1;transcript_id=HG003_chrY_T0000639;gene_id=HG003_chrY_G0000229;Parent=HG003_chrY_T0000639;transcript_name=hg002_chrY_paternal_453.1;gene_name=LOC107987346;ID=intron:HG003_chrY_T0000639:0;Name=LOC107987346;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22057821	22057928	.	+	.	source_transcript=hg002_chrY_paternal_453.1;source_transcript_name=hg002_chrY_paternal_453.1;source_gene=hg002_chrY_paternal_453;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_453;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_453.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_453.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987346;alternative_source_transcripts=hg002_chrY_paternal_453.1,hg002_chrY_paternal_453.1;transcript_id=HG003_chrY_T0000639;gene_id=HG003_chrY_G0000229;Parent=HG003_chrY_T0000639;transcript_name=hg002_chrY_paternal_453.1;gene_name=LOC107987346;ID=exon:HG003_chrY_T0000639:1;Name=LOC107987346;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22057929	22080018	.	+	.	source_transcript=hg002_chrY_paternal_453.1;source_transcript_name=hg002_chrY_paternal_453.1;source_gene=hg002_chrY_paternal_453;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_453;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_453.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_453.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987346;alternative_source_transcripts=hg002_chrY_paternal_453.1,hg002_chrY_paternal_453.1;transcript_id=HG003_chrY_T0000639;gene_id=HG003_chrY_G0000229;Parent=HG003_chrY_T0000639;transcript_name=hg002_chrY_paternal_453.1;gene_name=LOC107987346;ID=intron:HG003_chrY_T0000639:1;Name=LOC107987346;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22080019	22082843	.	+	.	source_transcript=hg002_chrY_paternal_453.1;source_transcript_name=hg002_chrY_paternal_453.1;source_gene=hg002_chrY_paternal_453;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_453;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_453.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_453.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987346;alternative_source_transcripts=hg002_chrY_paternal_453.1,hg002_chrY_paternal_453.1;transcript_id=HG003_chrY_T0000639;gene_id=HG003_chrY_G0000229;Parent=HG003_chrY_T0000639;transcript_name=hg002_chrY_paternal_453.1;gene_name=LOC107987346;ID=exon:HG003_chrY_T0000639:2;Name=LOC107987346;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22057606	22082843	1000	+	.	source_transcript=hg002_chrY_paternal_453.2;source_transcript_name=hg002_chrY_paternal_453.1;source_gene=hg002_chrY_paternal_453;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_453;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_453.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_453.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987346;alternative_source_transcripts=hg002_chrY_paternal_453.2,hg002_chrY_paternal_453.2;transcript_id=HG003_chrY_T0000640;gene_id=HG003_chrY_G0000229;Parent=HG003_chrY_G0000229;transcript_name=hg002_chrY_paternal_453.1;gene_name=LOC107987346;ID=HG003_chrY_T0000640;Name=LOC107987346
HG003_chrY	CAT	exon	22057606	22057643	.	+	.	source_transcript=hg002_chrY_paternal_453.2;source_transcript_name=hg002_chrY_paternal_453.1;source_gene=hg002_chrY_paternal_453;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_453;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_453.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_453.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987346;alternative_source_transcripts=hg002_chrY_paternal_453.2,hg002_chrY_paternal_453.2;transcript_id=HG003_chrY_T0000640;gene_id=HG003_chrY_G0000229;Parent=HG003_chrY_T0000640;transcript_name=hg002_chrY_paternal_453.1;gene_name=LOC107987346;ID=exon:HG003_chrY_T0000640:0;Name=LOC107987346;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22057644	22057820	.	+	.	source_transcript=hg002_chrY_paternal_453.2;source_transcript_name=hg002_chrY_paternal_453.1;source_gene=hg002_chrY_paternal_453;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_453;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_453.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_453.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987346;alternative_source_transcripts=hg002_chrY_paternal_453.2,hg002_chrY_paternal_453.2;transcript_id=HG003_chrY_T0000640;gene_id=HG003_chrY_G0000229;Parent=HG003_chrY_T0000640;transcript_name=hg002_chrY_paternal_453.1;gene_name=LOC107987346;ID=intron:HG003_chrY_T0000640:0;Name=LOC107987346;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22057821	22057928	.	+	.	source_transcript=hg002_chrY_paternal_453.2;source_transcript_name=hg002_chrY_paternal_453.1;source_gene=hg002_chrY_paternal_453;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_453;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_453.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_453.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987346;alternative_source_transcripts=hg002_chrY_paternal_453.2,hg002_chrY_paternal_453.2;transcript_id=HG003_chrY_T0000640;gene_id=HG003_chrY_G0000229;Parent=HG003_chrY_T0000640;transcript_name=hg002_chrY_paternal_453.1;gene_name=LOC107987346;ID=exon:HG003_chrY_T0000640:1;Name=LOC107987346;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22057929	22080018	.	+	.	source_transcript=hg002_chrY_paternal_453.2;source_transcript_name=hg002_chrY_paternal_453.1;source_gene=hg002_chrY_paternal_453;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_453;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_453.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_453.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987346;alternative_source_transcripts=hg002_chrY_paternal_453.2,hg002_chrY_paternal_453.2;transcript_id=HG003_chrY_T0000640;gene_id=HG003_chrY_G0000229;Parent=HG003_chrY_T0000640;transcript_name=hg002_chrY_paternal_453.1;gene_name=LOC107987346;ID=intron:HG003_chrY_T0000640:1;Name=LOC107987346;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22080019	22080177	.	+	.	source_transcript=hg002_chrY_paternal_453.2;source_transcript_name=hg002_chrY_paternal_453.1;source_gene=hg002_chrY_paternal_453;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_453;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_453.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_453.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987346;alternative_source_transcripts=hg002_chrY_paternal_453.2,hg002_chrY_paternal_453.2;transcript_id=HG003_chrY_T0000640;gene_id=HG003_chrY_G0000229;Parent=HG003_chrY_T0000640;transcript_name=hg002_chrY_paternal_453.1;gene_name=LOC107987346;ID=exon:HG003_chrY_T0000640:2;Name=LOC107987346;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22080178	22082591	.	+	.	source_transcript=hg002_chrY_paternal_453.2;source_transcript_name=hg002_chrY_paternal_453.1;source_gene=hg002_chrY_paternal_453;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_453;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_453.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_453.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987346;alternative_source_transcripts=hg002_chrY_paternal_453.2,hg002_chrY_paternal_453.2;transcript_id=HG003_chrY_T0000640;gene_id=HG003_chrY_G0000229;Parent=HG003_chrY_T0000640;transcript_name=hg002_chrY_paternal_453.1;gene_name=LOC107987346;ID=intron:HG003_chrY_T0000640:2;Name=LOC107987346;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22082592	22082843	.	+	.	source_transcript=hg002_chrY_paternal_453.2;source_transcript_name=hg002_chrY_paternal_453.1;source_gene=hg002_chrY_paternal_453;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_453;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_453.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_453.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987346;alternative_source_transcripts=hg002_chrY_paternal_453.2,hg002_chrY_paternal_453.2;transcript_id=HG003_chrY_T0000640;gene_id=HG003_chrY_G0000229;Parent=HG003_chrY_T0000640;transcript_name=hg002_chrY_paternal_453.1;gene_name=LOC107987346;ID=exon:HG003_chrY_T0000640:3;Name=LOC107987346;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22077534	22132473	.	-	.	source_gene_common_name=LOC107987347;source_gene=hg002_chrY_paternal_454;alternative_source_transcripts=hg002_chrY_paternal_454.1,hg002_chrY_paternal_454.1;gene_id=HG003_chrY_G0000230;gene_biotype=lncRNA;gene_name=LOC107987347;gene_sources=liftoff;ID=HG003_chrY_G0000230;Name=LOC107987347
HG003_chrY	CAT	transcript	22077534	22132473	1000	-	.	source_transcript=hg002_chrY_paternal_454.1;source_transcript_name=hg002_chrY_paternal_454.1;source_gene=hg002_chrY_paternal_454;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_454;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_454.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_454.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987347;alternative_source_transcripts=hg002_chrY_paternal_454.1,hg002_chrY_paternal_454.1;transcript_id=HG003_chrY_T0000641;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_G0000230;transcript_name=hg002_chrY_paternal_454.1;gene_name=LOC107987347;ID=HG003_chrY_T0000641;Name=LOC107987347
HG003_chrY	CAT	exon	22077534	22078619	.	-	.	source_transcript=hg002_chrY_paternal_454.1;source_transcript_name=hg002_chrY_paternal_454.1;source_gene=hg002_chrY_paternal_454;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_454;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_454.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_454.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987347;alternative_source_transcripts=hg002_chrY_paternal_454.1,hg002_chrY_paternal_454.1;transcript_id=HG003_chrY_T0000641;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000641;transcript_name=hg002_chrY_paternal_454.1;gene_name=LOC107987347;ID=exon:HG003_chrY_T0000641:0;Name=LOC107987347;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22078620	22125617	.	-	.	source_transcript=hg002_chrY_paternal_454.1;source_transcript_name=hg002_chrY_paternal_454.1;source_gene=hg002_chrY_paternal_454;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_454;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_454.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_454.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987347;alternative_source_transcripts=hg002_chrY_paternal_454.1,hg002_chrY_paternal_454.1;transcript_id=HG003_chrY_T0000641;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000641;transcript_name=hg002_chrY_paternal_454.1;gene_name=LOC107987347;ID=intron:HG003_chrY_T0000641:0;Name=LOC107987347;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22125618	22125683	.	-	.	source_transcript=hg002_chrY_paternal_454.1;source_transcript_name=hg002_chrY_paternal_454.1;source_gene=hg002_chrY_paternal_454;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_454;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_454.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_454.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987347;alternative_source_transcripts=hg002_chrY_paternal_454.1,hg002_chrY_paternal_454.1;transcript_id=HG003_chrY_T0000641;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000641;transcript_name=hg002_chrY_paternal_454.1;gene_name=LOC107987347;ID=exon:HG003_chrY_T0000641:1;Name=LOC107987347;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22125684	22132023	.	-	.	source_transcript=hg002_chrY_paternal_454.1;source_transcript_name=hg002_chrY_paternal_454.1;source_gene=hg002_chrY_paternal_454;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_454;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_454.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_454.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987347;alternative_source_transcripts=hg002_chrY_paternal_454.1,hg002_chrY_paternal_454.1;transcript_id=HG003_chrY_T0000641;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000641;transcript_name=hg002_chrY_paternal_454.1;gene_name=LOC107987347;ID=intron:HG003_chrY_T0000641:1;Name=LOC107987347;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22132024	22132473	.	-	.	source_transcript=hg002_chrY_paternal_454.1;source_transcript_name=hg002_chrY_paternal_454.1;source_gene=hg002_chrY_paternal_454;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_454;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_454.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_454.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987347;alternative_source_transcripts=hg002_chrY_paternal_454.1,hg002_chrY_paternal_454.1;transcript_id=HG003_chrY_T0000641;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000641;transcript_name=hg002_chrY_paternal_454.1;gene_name=LOC107987347;ID=exon:HG003_chrY_T0000641:2;Name=LOC107987347;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22211371	22281313	.	-	.	source_gene_common_name=PRORY;source_gene=hg002_chrY_paternal_456;alternative_source_transcripts=hg002_chrY_paternal_456.1,hg002_chrY_paternal_456.1;gene_id=HG003_chrY_G0000231;gene_biotype=lncRNA;gene_name=PRORY;gene_sources=liftoff;ID=HG003_chrY_G0000231;Name=PRORY
HG003_chrY	CAT	transcript	22211371	22281313	1000	-	.	source_transcript=hg002_chrY_paternal_456.1;source_transcript_name=hg002_chrY_paternal_456.1;source_gene=hg002_chrY_paternal_456;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_456;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_456.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_456.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRORY;alternative_source_transcripts=hg002_chrY_paternal_456.1,hg002_chrY_paternal_456.1;transcript_id=HG003_chrY_T0000642;gene_id=HG003_chrY_G0000231;Parent=HG003_chrY_G0000231;transcript_name=hg002_chrY_paternal_456.1;gene_name=PRORY;ID=HG003_chrY_T0000642;Name=PRORY
HG003_chrY	CAT	exon	22211371	22212745	.	-	.	source_transcript=hg002_chrY_paternal_456.1;source_transcript_name=hg002_chrY_paternal_456.1;source_gene=hg002_chrY_paternal_456;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_456;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_456.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_456.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRORY;alternative_source_transcripts=hg002_chrY_paternal_456.1,hg002_chrY_paternal_456.1;transcript_id=HG003_chrY_T0000642;gene_id=HG003_chrY_G0000231;Parent=HG003_chrY_T0000642;transcript_name=hg002_chrY_paternal_456.1;gene_name=PRORY;ID=exon:HG003_chrY_T0000642:0;Name=PRORY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22212746	22212896	.	-	.	source_transcript=hg002_chrY_paternal_456.1;source_transcript_name=hg002_chrY_paternal_456.1;source_gene=hg002_chrY_paternal_456;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_456;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_456.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_456.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRORY;alternative_source_transcripts=hg002_chrY_paternal_456.1,hg002_chrY_paternal_456.1;transcript_id=HG003_chrY_T0000642;gene_id=HG003_chrY_G0000231;Parent=HG003_chrY_T0000642;transcript_name=hg002_chrY_paternal_456.1;gene_name=PRORY;ID=intron:HG003_chrY_T0000642:0;Name=PRORY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22212897	22213261	.	-	.	source_transcript=hg002_chrY_paternal_456.1;source_transcript_name=hg002_chrY_paternal_456.1;source_gene=hg002_chrY_paternal_456;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_456;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_456.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_456.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRORY;alternative_source_transcripts=hg002_chrY_paternal_456.1,hg002_chrY_paternal_456.1;transcript_id=HG003_chrY_T0000642;gene_id=HG003_chrY_G0000231;Parent=HG003_chrY_T0000642;transcript_name=hg002_chrY_paternal_456.1;gene_name=PRORY;ID=exon:HG003_chrY_T0000642:1;Name=PRORY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22213262	22213377	.	-	.	source_transcript=hg002_chrY_paternal_456.1;source_transcript_name=hg002_chrY_paternal_456.1;source_gene=hg002_chrY_paternal_456;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_456;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_456.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_456.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRORY;alternative_source_transcripts=hg002_chrY_paternal_456.1,hg002_chrY_paternal_456.1;transcript_id=HG003_chrY_T0000642;gene_id=HG003_chrY_G0000231;Parent=HG003_chrY_T0000642;transcript_name=hg002_chrY_paternal_456.1;gene_name=PRORY;ID=intron:HG003_chrY_T0000642:1;Name=PRORY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22213378	22213434	.	-	.	source_transcript=hg002_chrY_paternal_456.1;source_transcript_name=hg002_chrY_paternal_456.1;source_gene=hg002_chrY_paternal_456;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_456;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_456.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_456.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRORY;alternative_source_transcripts=hg002_chrY_paternal_456.1,hg002_chrY_paternal_456.1;transcript_id=HG003_chrY_T0000642;gene_id=HG003_chrY_G0000231;Parent=HG003_chrY_T0000642;transcript_name=hg002_chrY_paternal_456.1;gene_name=PRORY;ID=exon:HG003_chrY_T0000642:2;Name=PRORY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22213435	22215696	.	-	.	source_transcript=hg002_chrY_paternal_456.1;source_transcript_name=hg002_chrY_paternal_456.1;source_gene=hg002_chrY_paternal_456;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_456;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_456.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_456.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRORY;alternative_source_transcripts=hg002_chrY_paternal_456.1,hg002_chrY_paternal_456.1;transcript_id=HG003_chrY_T0000642;gene_id=HG003_chrY_G0000231;Parent=HG003_chrY_T0000642;transcript_name=hg002_chrY_paternal_456.1;gene_name=PRORY;ID=intron:HG003_chrY_T0000642:2;Name=PRORY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22215697	22215821	.	-	.	source_transcript=hg002_chrY_paternal_456.1;source_transcript_name=hg002_chrY_paternal_456.1;source_gene=hg002_chrY_paternal_456;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_456;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_456.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_456.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRORY;alternative_source_transcripts=hg002_chrY_paternal_456.1,hg002_chrY_paternal_456.1;transcript_id=HG003_chrY_T0000642;gene_id=HG003_chrY_G0000231;Parent=HG003_chrY_T0000642;transcript_name=hg002_chrY_paternal_456.1;gene_name=PRORY;ID=exon:HG003_chrY_T0000642:3;Name=PRORY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22215822	22281110	.	-	.	source_transcript=hg002_chrY_paternal_456.1;source_transcript_name=hg002_chrY_paternal_456.1;source_gene=hg002_chrY_paternal_456;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_456;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_456.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_456.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRORY;alternative_source_transcripts=hg002_chrY_paternal_456.1,hg002_chrY_paternal_456.1;transcript_id=HG003_chrY_T0000642;gene_id=HG003_chrY_G0000231;Parent=HG003_chrY_T0000642;transcript_name=hg002_chrY_paternal_456.1;gene_name=PRORY;ID=intron:HG003_chrY_T0000642:3;Name=PRORY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22281111	22281313	.	-	.	source_transcript=hg002_chrY_paternal_456.1;source_transcript_name=hg002_chrY_paternal_456.1;source_gene=hg002_chrY_paternal_456;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_456;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_456.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_456.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRORY;alternative_source_transcripts=hg002_chrY_paternal_456.1,hg002_chrY_paternal_456.1;transcript_id=HG003_chrY_T0000642;gene_id=HG003_chrY_G0000231;Parent=HG003_chrY_T0000642;transcript_name=hg002_chrY_paternal_456.1;gene_name=PRORY;ID=exon:HG003_chrY_T0000642:4;Name=PRORY;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22224614	22231028	.	-	.	source_gene_common_name=RBMY2EP;source_gene=hg002_chrY_paternal_457;alternative_source_transcripts=hg002_chrY_paternal_457.1,hg002_chrY_paternal_457.1;gene_id=HG003_chrY_G0000232;gene_biotype=transcribed_pseudogene;gene_name=RBMY2EP;gene_sources=liftoff;ID=HG003_chrY_G0000232;Name=RBMY2EP
HG003_chrY	CAT	transcript	22224614	22231028	1000	-	.	source_transcript=hg002_chrY_paternal_457.1;source_transcript_name=hg002_chrY_paternal_457.1;source_gene=hg002_chrY_paternal_457;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_457;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_457.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_457.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2EP;alternative_source_transcripts=hg002_chrY_paternal_457.1,hg002_chrY_paternal_457.1;transcript_id=HG003_chrY_T0000643;gene_id=HG003_chrY_G0000232;Parent=HG003_chrY_G0000232;transcript_name=hg002_chrY_paternal_457.1;gene_name=RBMY2EP;ID=HG003_chrY_T0000643;Name=RBMY2EP
HG003_chrY	CAT	exon	22224614	22224757	.	-	.	source_transcript=hg002_chrY_paternal_457.1;source_transcript_name=hg002_chrY_paternal_457.1;source_gene=hg002_chrY_paternal_457;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_457;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_457.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_457.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2EP;alternative_source_transcripts=hg002_chrY_paternal_457.1,hg002_chrY_paternal_457.1;transcript_id=HG003_chrY_T0000643;gene_id=HG003_chrY_G0000232;Parent=HG003_chrY_T0000643;transcript_name=hg002_chrY_paternal_457.1;gene_name=RBMY2EP;ID=exon:HG003_chrY_T0000643:0;Name=RBMY2EP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22224758	22225165	.	-	.	source_transcript=hg002_chrY_paternal_457.1;source_transcript_name=hg002_chrY_paternal_457.1;source_gene=hg002_chrY_paternal_457;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_457;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_457.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_457.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2EP;alternative_source_transcripts=hg002_chrY_paternal_457.1,hg002_chrY_paternal_457.1;transcript_id=HG003_chrY_T0000643;gene_id=HG003_chrY_G0000232;Parent=HG003_chrY_T0000643;transcript_name=hg002_chrY_paternal_457.1;gene_name=RBMY2EP;ID=intron:HG003_chrY_T0000643:0;Name=RBMY2EP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22225166	22225254	.	-	.	source_transcript=hg002_chrY_paternal_457.1;source_transcript_name=hg002_chrY_paternal_457.1;source_gene=hg002_chrY_paternal_457;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_457;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_457.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_457.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2EP;alternative_source_transcripts=hg002_chrY_paternal_457.1,hg002_chrY_paternal_457.1;transcript_id=HG003_chrY_T0000643;gene_id=HG003_chrY_G0000232;Parent=HG003_chrY_T0000643;transcript_name=hg002_chrY_paternal_457.1;gene_name=RBMY2EP;ID=exon:HG003_chrY_T0000643:1;Name=RBMY2EP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22225255	22225336	.	-	.	source_transcript=hg002_chrY_paternal_457.1;source_transcript_name=hg002_chrY_paternal_457.1;source_gene=hg002_chrY_paternal_457;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_457;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_457.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_457.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2EP;alternative_source_transcripts=hg002_chrY_paternal_457.1,hg002_chrY_paternal_457.1;transcript_id=HG003_chrY_T0000643;gene_id=HG003_chrY_G0000232;Parent=HG003_chrY_T0000643;transcript_name=hg002_chrY_paternal_457.1;gene_name=RBMY2EP;ID=intron:HG003_chrY_T0000643:1;Name=RBMY2EP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22225337	22225447	.	-	.	source_transcript=hg002_chrY_paternal_457.1;source_transcript_name=hg002_chrY_paternal_457.1;source_gene=hg002_chrY_paternal_457;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_457;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_457.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_457.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2EP;alternative_source_transcripts=hg002_chrY_paternal_457.1,hg002_chrY_paternal_457.1;transcript_id=HG003_chrY_T0000643;gene_id=HG003_chrY_G0000232;Parent=HG003_chrY_T0000643;transcript_name=hg002_chrY_paternal_457.1;gene_name=RBMY2EP;ID=exon:HG003_chrY_T0000643:2;Name=RBMY2EP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22225448	22230388	.	-	.	source_transcript=hg002_chrY_paternal_457.1;source_transcript_name=hg002_chrY_paternal_457.1;source_gene=hg002_chrY_paternal_457;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_457;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_457.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_457.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2EP;alternative_source_transcripts=hg002_chrY_paternal_457.1,hg002_chrY_paternal_457.1;transcript_id=HG003_chrY_T0000643;gene_id=HG003_chrY_G0000232;Parent=HG003_chrY_T0000643;transcript_name=hg002_chrY_paternal_457.1;gene_name=RBMY2EP;ID=intron:HG003_chrY_T0000643:2;Name=RBMY2EP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22230389	22230492	.	-	.	source_transcript=hg002_chrY_paternal_457.1;source_transcript_name=hg002_chrY_paternal_457.1;source_gene=hg002_chrY_paternal_457;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_457;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_457.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_457.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2EP;alternative_source_transcripts=hg002_chrY_paternal_457.1,hg002_chrY_paternal_457.1;transcript_id=HG003_chrY_T0000643;gene_id=HG003_chrY_G0000232;Parent=HG003_chrY_T0000643;transcript_name=hg002_chrY_paternal_457.1;gene_name=RBMY2EP;ID=exon:HG003_chrY_T0000643:3;Name=RBMY2EP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22230493	22230942	.	-	.	source_transcript=hg002_chrY_paternal_457.1;source_transcript_name=hg002_chrY_paternal_457.1;source_gene=hg002_chrY_paternal_457;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_457;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_457.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_457.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2EP;alternative_source_transcripts=hg002_chrY_paternal_457.1,hg002_chrY_paternal_457.1;transcript_id=HG003_chrY_T0000643;gene_id=HG003_chrY_G0000232;Parent=HG003_chrY_T0000643;transcript_name=hg002_chrY_paternal_457.1;gene_name=RBMY2EP;ID=intron:HG003_chrY_T0000643:3;Name=RBMY2EP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22230943	22231028	.	-	.	source_transcript=hg002_chrY_paternal_457.1;source_transcript_name=hg002_chrY_paternal_457.1;source_gene=hg002_chrY_paternal_457;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_457;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_457.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_457.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2EP;alternative_source_transcripts=hg002_chrY_paternal_457.1,hg002_chrY_paternal_457.1;transcript_id=HG003_chrY_T0000643;gene_id=HG003_chrY_G0000232;Parent=HG003_chrY_T0000643;transcript_name=hg002_chrY_paternal_457.1;gene_name=RBMY2EP;ID=exon:HG003_chrY_T0000643:4;Name=RBMY2EP;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22340804	22355242	.	+	.	source_gene_common_name=RBMY1A1;source_gene=hg002_chrY_paternal_462;alternative_source_transcripts=hg002_chrY_paternal_462.1,hg002_chrY_paternal_462.1;gene_id=HG003_chrY_G0000233;gene_biotype=protein_coding;gene_name=RBMY1A1;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000233;Name=RBMY1A1
HG003_chrY	CAT	transcript	22340804	22354254	1000	+	.	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.1,hg002_chrY_paternal_462.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000644;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_G0000233;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=HG003_chrY_T0000644;Name=RBMY1A1
HG003_chrY	CAT	exon	22340804	22340951	.	+	.	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.1,hg002_chrY_paternal_462.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000644;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000644;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000644:0;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22340952	22342812	.	+	.	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.1,hg002_chrY_paternal_462.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000644;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000644;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000644:0;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22342813	22342925	.	+	.	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.1,hg002_chrY_paternal_462.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000644;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000644;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000644:1;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22342817	22342925	.	+	0	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.1,hg002_chrY_paternal_462.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000644;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000644;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000644:0;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	22342817	22342819	.	+	0	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.1,hg002_chrY_paternal_462.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000644;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000644;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=start_codon:HG003_chrY_T0000644;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22342926	22343389	.	+	.	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.1,hg002_chrY_paternal_462.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000644;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000644;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000644:1;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22343390	22343493	.	+	.	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.1,hg002_chrY_paternal_462.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000644;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000644;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000644:2;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22343390	22343493	.	+	2	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.1,hg002_chrY_paternal_462.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000644;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000644;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000644:1;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22343494	22346512	.	+	.	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.1,hg002_chrY_paternal_462.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000644;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000644;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000644:2;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22346513	22346690	.	+	.	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.1,hg002_chrY_paternal_462.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000644;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000644;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000644:3;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22346513	22346690	.	+	0	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.1,hg002_chrY_paternal_462.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000644;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000644;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000644:2;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22346691	22348605	.	+	.	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.1,hg002_chrY_paternal_462.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000644;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000644;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000644:3;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22348606	22348758	.	+	.	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.1,hg002_chrY_paternal_462.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000644;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000644;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000644:4;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22348606	22348758	.	+	2	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.1,hg002_chrY_paternal_462.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000644;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000644;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000644:3;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22348759	22350768	.	+	.	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.1,hg002_chrY_paternal_462.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000644;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000644;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000644:4;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22350769	22350883	.	+	.	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.1,hg002_chrY_paternal_462.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000644;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000644;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000644:5;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22350769	22350883	.	+	2	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.1,hg002_chrY_paternal_462.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000644;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000644;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000644:4;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22350884	22351838	.	+	.	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.1,hg002_chrY_paternal_462.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000644;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000644;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000644:5;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22351839	22351949	.	+	.	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.1,hg002_chrY_paternal_462.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000644;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000644;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000644:6;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22351839	22351949	.	+	1	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.1,hg002_chrY_paternal_462.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000644;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000644;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000644:5;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22351950	22352390	.	+	.	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.1,hg002_chrY_paternal_462.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000644;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000644;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000644:6;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22352391	22352501	.	+	.	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.1,hg002_chrY_paternal_462.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000644;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000644;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000644:7;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22352391	22352501	.	+	1	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.1,hg002_chrY_paternal_462.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000644;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000644;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000644:6;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22352502	22352935	.	+	.	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.1,hg002_chrY_paternal_462.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000644;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000644;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000644:7;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22352936	22353046	.	+	.	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.1,hg002_chrY_paternal_462.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000644;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000644;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000644:8;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22352936	22353046	.	+	1	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.1,hg002_chrY_paternal_462.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000644;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000644;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000644:7;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22353047	22353967	.	+	.	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.1,hg002_chrY_paternal_462.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000644;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000644;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000644:8;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22353968	22354078	.	+	.	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.1,hg002_chrY_paternal_462.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000644;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000644;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000644:9;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22353968	22354078	.	+	1	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.1,hg002_chrY_paternal_462.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000644;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000644;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000644:8;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22354079	22354165	.	+	.	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.1,hg002_chrY_paternal_462.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000644;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000644;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000644:9;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22354166	22354254	.	+	.	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.1,hg002_chrY_paternal_462.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000644;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000644;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000644:10;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22354166	22354253	.	+	1	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.1,hg002_chrY_paternal_462.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000644;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000644;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000644:9;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	22354251	22354253	.	+	0	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.1,hg002_chrY_paternal_462.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000644;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000644;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=stop_codon:HG003_chrY_T0000644;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22340804	22355242	1000	+	.	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.2,hg002_chrY_paternal_462.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000645;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_G0000233;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=HG003_chrY_T0000645;Name=RBMY1A1
HG003_chrY	CAT	exon	22340804	22340951	.	+	.	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.2,hg002_chrY_paternal_462.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000645;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000645;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000645:0;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22340952	22342812	.	+	.	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.2,hg002_chrY_paternal_462.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000645;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000645;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000645:0;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22342813	22342925	.	+	.	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.2,hg002_chrY_paternal_462.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000645;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000645;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000645:1;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22342817	22342925	.	+	0	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.2,hg002_chrY_paternal_462.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000645;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000645;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000645:0;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	22342817	22342819	.	+	0	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.2,hg002_chrY_paternal_462.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000645;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000645;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=start_codon:HG003_chrY_T0000645;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22342926	22343389	.	+	.	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.2,hg002_chrY_paternal_462.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000645;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000645;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000645:1;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22343390	22343493	.	+	.	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.2,hg002_chrY_paternal_462.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000645;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000645;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000645:2;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22343390	22343493	.	+	2	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.2,hg002_chrY_paternal_462.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000645;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000645;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000645:1;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22343494	22346512	.	+	.	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.2,hg002_chrY_paternal_462.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000645;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000645;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000645:2;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22346513	22346690	.	+	.	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.2,hg002_chrY_paternal_462.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000645;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000645;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000645:3;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22346513	22346690	.	+	0	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.2,hg002_chrY_paternal_462.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000645;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000645;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000645:2;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22346691	22348605	.	+	.	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.2,hg002_chrY_paternal_462.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000645;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000645;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000645:3;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22348606	22348758	.	+	.	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.2,hg002_chrY_paternal_462.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000645;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000645;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000645:4;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22348606	22348758	.	+	2	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.2,hg002_chrY_paternal_462.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000645;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000645;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000645:3;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22348759	22350768	.	+	.	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.2,hg002_chrY_paternal_462.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000645;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000645;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000645:4;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22350769	22350883	.	+	.	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.2,hg002_chrY_paternal_462.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000645;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000645;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000645:5;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22350769	22350883	.	+	2	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.2,hg002_chrY_paternal_462.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000645;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000645;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000645:4;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22350884	22351838	.	+	.	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.2,hg002_chrY_paternal_462.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000645;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000645;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000645:5;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22351839	22351949	.	+	.	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.2,hg002_chrY_paternal_462.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000645;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000645;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000645:6;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22351839	22351949	.	+	1	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.2,hg002_chrY_paternal_462.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000645;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000645;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000645:5;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22351950	22352390	.	+	.	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.2,hg002_chrY_paternal_462.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000645;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000645;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000645:6;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22352391	22352501	.	+	.	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.2,hg002_chrY_paternal_462.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000645;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000645;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000645:7;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22352391	22352501	.	+	1	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.2,hg002_chrY_paternal_462.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000645;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000645;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000645:6;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22352502	22352935	.	+	.	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.2,hg002_chrY_paternal_462.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000645;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000645;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000645:7;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22352936	22353046	.	+	.	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.2,hg002_chrY_paternal_462.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000645;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000645;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000645:8;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22352936	22353046	.	+	1	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.2,hg002_chrY_paternal_462.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000645;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000645;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000645:7;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22353047	22354165	.	+	.	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.2,hg002_chrY_paternal_462.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000645;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000645;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000645:8;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22354166	22354254	.	+	.	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.2,hg002_chrY_paternal_462.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000645;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000645;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000645:9;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22354166	22354254	.	+	1	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.2,hg002_chrY_paternal_462.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000645;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000645;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000645:8;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22354255	22354665	.	+	.	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.2,hg002_chrY_paternal_462.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000645;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000645;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000645:9;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22354666	22355242	.	+	.	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.2,hg002_chrY_paternal_462.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000645;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000645;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000645:10;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22354666	22354964	.	+	2	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.2,hg002_chrY_paternal_462.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000645;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000645;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000645:9;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	22354962	22354964	.	+	0	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.2,hg002_chrY_paternal_462.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000645;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000645;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=stop_codon:HG003_chrY_T0000645;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22340804	22355242	1000	+	.	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.3,hg002_chrY_paternal_462.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000646;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_G0000233;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=HG003_chrY_T0000646;Name=RBMY1A1
HG003_chrY	CAT	exon	22340804	22340951	.	+	.	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.3,hg002_chrY_paternal_462.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000646;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000646;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000646:0;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22340952	22342812	.	+	.	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.3,hg002_chrY_paternal_462.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000646;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000646;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000646:0;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22342813	22342925	.	+	.	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.3,hg002_chrY_paternal_462.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000646;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000646;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000646:1;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22342926	22343389	.	+	.	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.3,hg002_chrY_paternal_462.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000646;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000646;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000646:1;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22343390	22343493	.	+	.	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.3,hg002_chrY_paternal_462.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000646;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000646;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000646:2;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22343494	22348605	.	+	.	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.3,hg002_chrY_paternal_462.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000646;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000646;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000646:2;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22348606	22348758	.	+	.	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.3,hg002_chrY_paternal_462.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000646;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000646;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000646:3;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22348635	22348758	.	+	0	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.3,hg002_chrY_paternal_462.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000646;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000646;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000646:0;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	22348635	22348637	.	+	0	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.3,hg002_chrY_paternal_462.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000646;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000646;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=start_codon:HG003_chrY_T0000646;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22348759	22350768	.	+	.	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.3,hg002_chrY_paternal_462.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000646;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000646;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000646:3;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22350769	22350883	.	+	.	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.3,hg002_chrY_paternal_462.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000646;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000646;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000646:4;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22350769	22350883	.	+	2	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.3,hg002_chrY_paternal_462.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000646;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000646;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000646:1;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22350884	22351838	.	+	.	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.3,hg002_chrY_paternal_462.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000646;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000646;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000646:4;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22351839	22351949	.	+	.	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.3,hg002_chrY_paternal_462.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000646;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000646;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000646:5;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22351839	22351949	.	+	1	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.3,hg002_chrY_paternal_462.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000646;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000646;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000646:2;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22351950	22352390	.	+	.	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.3,hg002_chrY_paternal_462.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000646;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000646;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000646:5;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22352391	22352501	.	+	.	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.3,hg002_chrY_paternal_462.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000646;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000646;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000646:6;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22352391	22352501	.	+	1	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.3,hg002_chrY_paternal_462.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000646;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000646;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000646:3;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22352502	22352935	.	+	.	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.3,hg002_chrY_paternal_462.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000646;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000646;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000646:6;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22352936	22353046	.	+	.	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.3,hg002_chrY_paternal_462.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000646;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000646;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000646:7;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22352936	22353046	.	+	1	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.3,hg002_chrY_paternal_462.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000646;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000646;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000646:4;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22353047	22353967	.	+	.	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.3,hg002_chrY_paternal_462.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000646;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000646;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000646:7;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22353968	22354078	.	+	.	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.3,hg002_chrY_paternal_462.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000646;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000646;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000646:8;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22353968	22354078	.	+	1	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.3,hg002_chrY_paternal_462.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000646;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000646;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000646:5;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22354079	22354165	.	+	.	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.3,hg002_chrY_paternal_462.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000646;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000646;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000646:8;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22354166	22354254	.	+	.	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.3,hg002_chrY_paternal_462.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000646;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000646;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000646:9;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22354166	22354254	.	+	1	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.3,hg002_chrY_paternal_462.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000646;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000646;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000646:6;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22354255	22354665	.	+	.	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.3,hg002_chrY_paternal_462.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000646;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000646;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000646:9;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22354666	22355242	.	+	.	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.3,hg002_chrY_paternal_462.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000646;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000646;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000646:10;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22354666	22354964	.	+	2	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.3,hg002_chrY_paternal_462.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000646;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000646;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000646:7;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	22354962	22354964	.	+	0	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.3,hg002_chrY_paternal_462.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000646;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000646;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=stop_codon:HG003_chrY_T0000646;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22340804	22355242	1000	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.4,hg002_chrY_paternal_462.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_G0000233;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=HG003_chrY_T0000647;Name=RBMY1A1
HG003_chrY	CAT	exon	22340804	22340951	.	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.4,hg002_chrY_paternal_462.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000647;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000647:0;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22340952	22342812	.	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.4,hg002_chrY_paternal_462.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000647;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000647:0;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22342813	22342925	.	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.4,hg002_chrY_paternal_462.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000647;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000647:1;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22342817	22342925	.	+	0	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.4,hg002_chrY_paternal_462.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000647;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000647:0;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	22342817	22342819	.	+	0	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.4,hg002_chrY_paternal_462.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000647;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=start_codon:HG003_chrY_T0000647;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22342926	22343389	.	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.4,hg002_chrY_paternal_462.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000647;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000647:1;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22343390	22343493	.	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.4,hg002_chrY_paternal_462.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000647;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000647:2;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22343390	22343493	.	+	2	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.4,hg002_chrY_paternal_462.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000647;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000647:1;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22343494	22346512	.	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.4,hg002_chrY_paternal_462.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000647;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000647:2;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22346513	22346690	.	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.4,hg002_chrY_paternal_462.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000647;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000647:3;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22346513	22346690	.	+	0	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.4,hg002_chrY_paternal_462.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000647;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000647:2;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22346691	22348605	.	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.4,hg002_chrY_paternal_462.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000647;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000647:3;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22348606	22348758	.	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.4,hg002_chrY_paternal_462.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000647;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000647:4;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22348606	22348758	.	+	2	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.4,hg002_chrY_paternal_462.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000647;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000647:3;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22348759	22350768	.	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.4,hg002_chrY_paternal_462.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000647;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000647:4;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22350769	22350883	.	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.4,hg002_chrY_paternal_462.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000647;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000647:5;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22350769	22350883	.	+	2	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.4,hg002_chrY_paternal_462.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000647;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000647:4;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22350884	22351838	.	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.4,hg002_chrY_paternal_462.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000647;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000647:5;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22351839	22351949	.	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.4,hg002_chrY_paternal_462.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000647;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000647:6;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22351839	22351949	.	+	1	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.4,hg002_chrY_paternal_462.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000647;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000647:5;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22351950	22352390	.	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.4,hg002_chrY_paternal_462.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000647;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000647:6;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22352391	22352501	.	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.4,hg002_chrY_paternal_462.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000647;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000647:7;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22352391	22352501	.	+	1	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.4,hg002_chrY_paternal_462.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000647;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000647:6;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22352502	22352935	.	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.4,hg002_chrY_paternal_462.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000647;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000647:7;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22352936	22353046	.	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.4,hg002_chrY_paternal_462.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000647;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000647:8;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22352936	22353046	.	+	1	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.4,hg002_chrY_paternal_462.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000647;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000647:7;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22353047	22353967	.	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.4,hg002_chrY_paternal_462.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000647;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000647:8;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22353968	22354078	.	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.4,hg002_chrY_paternal_462.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000647;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000647:9;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22353968	22354078	.	+	1	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.4,hg002_chrY_paternal_462.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000647;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000647:8;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22354079	22354165	.	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.4,hg002_chrY_paternal_462.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000647;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000647:9;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22354166	22354254	.	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.4,hg002_chrY_paternal_462.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000647;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000647:10;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22354166	22354254	.	+	1	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.4,hg002_chrY_paternal_462.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000647;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000647:9;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22354255	22354665	.	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.4,hg002_chrY_paternal_462.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000647;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000647:10;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22354666	22355242	.	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.4,hg002_chrY_paternal_462.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000647;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000647:11;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22354666	22354964	.	+	2	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.4,hg002_chrY_paternal_462.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000647;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000647:10;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	22354962	22354964	.	+	0	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_462.4,hg002_chrY_paternal_462.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000647;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=stop_codon:HG003_chrY_T0000647;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22358114	22390425	.	+	.	source_gene_common_name=RBMY1D;source_gene=hg002_chrY_paternal_463;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;gene_id=HG003_chrY_G0000234;gene_biotype=protein_coding;gene_name=RBMY1D;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000234;Name=RBMY1D
HG003_chrY	CAT	transcript	22358114	22378782	100	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000648;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_G0000234;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=HG003_chrY_T0000648;Name=RBMY1D
HG003_chrY	CAT	exon	22358114	22358134	.	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000648;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000648;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000648:0;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22358135	22366342	.	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000648;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000648;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000648:0;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22366343	22366455	.	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000648;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000648;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000648:1;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22366347	22366455	.	+	0	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000648;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000648;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000648:0;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	22366347	22366349	.	+	0	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000648;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000648;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=start_codon:HG003_chrY_T0000648;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22366456	22366929	.	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000648;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000648;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000648:1;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22366930	22367033	.	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000648;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000648;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000648:2;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22366930	22367033	.	+	2	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000648;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000648;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000648:1;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22367034	22370052	.	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000648;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000648;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000648:2;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22370053	22370230	.	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000648;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000648;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000648:3;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22370053	22370230	.	+	0	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000648;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000648;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000648:2;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22370231	22372145	.	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000648;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000648;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000648:3;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22372146	22372298	.	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000648;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000648;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000648:4;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22372146	22372298	.	+	2	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000648;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000648;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000648:3;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22372299	22374308	.	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000648;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000648;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000648:4;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22374309	22374423	.	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000648;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000648;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000648:5;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22374309	22374423	.	+	2	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000648;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000648;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000648:4;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22374424	22375378	.	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000648;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000648;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000648:5;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22375379	22375489	.	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000648;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000648;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000648:6;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22375379	22375489	.	+	1	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000648;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000648;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000648:5;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22375490	22375930	.	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000648;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000648;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000648:6;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22375931	22376041	.	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000648;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000648;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000648:7;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22375931	22376041	.	+	1	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000648;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000648;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000648:6;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22376042	22376475	.	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000648;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000648;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000648:7;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22376476	22376586	.	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000648;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000648;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000648:8;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22376476	22376586	.	+	1	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000648;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000648;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000648:7;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22376587	22377507	.	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000648;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000648;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000648:8;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22377508	22377618	.	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000648;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000648;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000648:9;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22377508	22377618	.	+	1	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000648;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000648;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000648:8;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22377619	22377705	.	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000648;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000648;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000648:9;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22377706	22377794	.	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000648;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000648;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000648:10;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22377706	22377794	.	+	1	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000648;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000648;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000648:9;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22377795	22378205	.	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000648;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000648;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000648:10;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22378206	22378782	.	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000648;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000648;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000648:11;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22378206	22378504	.	+	2	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000648;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000648;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000648:10;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	22378502	22378504	.	+	0	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000648;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000648;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=stop_codon:HG003_chrY_T0000648;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22364334	22378782	100	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000649;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_G0000234;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=HG003_chrY_T0000649;Name=RBMY1D
HG003_chrY	CAT	exon	22364334	22364481	.	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000649;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000649;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000649:0;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22364482	22366342	.	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000649;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000649;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000649:0;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22366343	22366455	.	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000649;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000649;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000649:1;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22366347	22366455	.	+	0	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000649;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000649;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000649:0;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	22366347	22366349	.	+	0	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000649;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000649;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=start_codon:HG003_chrY_T0000649;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22366456	22366929	.	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000649;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000649;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000649:1;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22366930	22367033	.	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000649;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000649;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000649:2;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22366930	22367033	.	+	2	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000649;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000649;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000649:1;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22367034	22370052	.	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000649;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000649;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000649:2;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22370053	22370230	.	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000649;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000649;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000649:3;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22370053	22370230	.	+	0	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000649;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000649;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000649:2;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22370231	22372145	.	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000649;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000649;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000649:3;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22372146	22372298	.	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000649;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000649;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000649:4;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22372146	22372298	.	+	2	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000649;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000649;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000649:3;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22372299	22374308	.	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000649;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000649;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000649:4;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22374309	22374423	.	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000649;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000649;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000649:5;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22374309	22374423	.	+	2	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000649;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000649;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000649:4;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22374424	22375378	.	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000649;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000649;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000649:5;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22375379	22375489	.	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000649;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000649;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000649:6;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22375379	22375489	.	+	1	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000649;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000649;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000649:5;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22375490	22375930	.	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000649;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000649;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000649:6;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22375931	22376041	.	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000649;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000649;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000649:7;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22375931	22376041	.	+	1	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000649;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000649;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000649:6;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22376042	22376475	.	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000649;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000649;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000649:7;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22376476	22376586	.	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000649;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000649;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000649:8;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22376476	22376586	.	+	1	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000649;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000649;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000649:7;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22376587	22377507	.	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000649;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000649;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000649:8;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22377508	22377618	.	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000649;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000649;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000649:9;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22377508	22377618	.	+	1	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000649;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000649;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000649:8;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22377619	22377705	.	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000649;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000649;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000649:9;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22377706	22377794	.	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000649;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000649;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000649:10;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22377706	22377794	.	+	1	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000649;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000649;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000649:9;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22377795	22378205	.	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000649;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000649;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000649:10;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22378206	22378782	.	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000649;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000649;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000649:11;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22378206	22378504	.	+	2	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000649;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000649;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000649:10;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	22378502	22378504	.	+	0	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000649;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000649;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=stop_codon:HG003_chrY_T0000649;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22364334	22378782	100	+	.	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000650;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_G0000234;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=HG003_chrY_T0000650;Name=RBMY1D
HG003_chrY	CAT	exon	22364334	22364481	.	+	.	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000650;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000650;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000650:0;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22364482	22366342	.	+	.	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000650;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000650;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000650:0;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22366343	22366455	.	+	.	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000650;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000650;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000650:1;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22366347	22366455	.	+	0	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000650;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000650;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000650:0;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	22366347	22366349	.	+	0	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000650;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000650;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=start_codon:HG003_chrY_T0000650;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22366456	22366929	.	+	.	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000650;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000650;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000650:1;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22366930	22367033	.	+	.	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000650;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000650;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000650:2;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22366930	22367033	.	+	2	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000650;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000650;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000650:1;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22367034	22370052	.	+	.	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000650;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000650;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000650:2;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22370053	22370230	.	+	.	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000650;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000650;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000650:3;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22370053	22370230	.	+	0	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000650;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000650;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000650:2;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22370231	22372145	.	+	.	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000650;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000650;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000650:3;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22372146	22372298	.	+	.	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000650;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000650;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000650:4;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22372146	22372298	.	+	2	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000650;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000650;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000650:3;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22372299	22374308	.	+	.	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000650;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000650;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000650:4;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22374309	22374423	.	+	.	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000650;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000650;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000650:5;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22374309	22374423	.	+	2	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000650;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000650;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000650:4;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22374424	22375378	.	+	.	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000650;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000650;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000650:5;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22375379	22375489	.	+	.	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000650;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000650;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000650:6;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22375379	22375489	.	+	1	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000650;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000650;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000650:5;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22375490	22375930	.	+	.	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000650;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000650;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000650:6;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22375931	22376041	.	+	.	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000650;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000650;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000650:7;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22375931	22376041	.	+	1	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000650;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000650;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000650:6;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22376042	22376475	.	+	.	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000650;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000650;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000650:7;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22376476	22376586	.	+	.	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000650;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000650;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000650:8;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22376476	22376586	.	+	1	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000650;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000650;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000650:7;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22376587	22377705	.	+	.	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000650;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000650;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000650:8;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22377706	22377794	.	+	.	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000650;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000650;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000650:9;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22377706	22377794	.	+	1	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000650;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000650;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000650:8;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22377795	22378205	.	+	.	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000650;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000650;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000650:9;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22378206	22378782	.	+	.	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000650;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000650;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000650:10;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22378206	22378504	.	+	2	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000650;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000650;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000650:9;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	22378502	22378504	.	+	0	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000650;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000650;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=stop_codon:HG003_chrY_T0000650;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22364334	22378782	100	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000651;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_G0000234;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=HG003_chrY_T0000651;Name=RBMY1D
HG003_chrY	CAT	exon	22364334	22364481	.	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000651;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000651;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000651:0;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22364482	22365154	.	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000651;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000651;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000651:0;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22365155	22365219	.	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000651;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000651;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000651:1;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22365220	22366342	.	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000651;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000651;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000651:1;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22366343	22366455	.	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000651;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000651;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000651:2;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22366405	22366455	.	+	0	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000651;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000651;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000651:0;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	22366405	22366407	.	+	0	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000651;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000651;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=start_codon:HG003_chrY_T0000651;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22366456	22366943	.	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000651;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000651;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000651:2;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22366944	22367033	.	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000651;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000651;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000651:3;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22366944	22367033	.	+	0	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000651;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000651;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000651:1;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22367034	22370052	.	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000651;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000651;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000651:3;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22370053	22370230	.	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000651;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000651;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000651:4;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22370053	22370230	.	+	0	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000651;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000651;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000651:2;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22370231	22372145	.	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000651;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000651;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000651:4;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22372146	22372298	.	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000651;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000651;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000651:5;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22372146	22372298	.	+	2	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000651;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000651;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000651:3;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22372299	22374308	.	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000651;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000651;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000651:5;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22374309	22374423	.	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000651;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000651;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000651:6;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22374309	22374423	.	+	2	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000651;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000651;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000651:4;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22374424	22375378	.	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000651;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000651;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000651:6;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22375379	22375489	.	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000651;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000651;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000651:7;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22375379	22375489	.	+	1	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000651;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000651;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000651:5;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22375490	22375930	.	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000651;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000651;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000651:7;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22375931	22376041	.	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000651;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000651;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000651:8;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22375931	22376041	.	+	1	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000651;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000651;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000651:6;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22376042	22376475	.	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000651;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000651;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000651:8;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22376476	22376586	.	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000651;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000651;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000651:9;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22376476	22376586	.	+	1	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000651;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000651;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000651:7;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22376587	22377705	.	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000651;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000651;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000651:9;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22377706	22377794	.	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000651;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000651;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000651:10;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22377706	22377794	.	+	1	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000651;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000651;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000651:8;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22377795	22378205	.	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000651;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000651;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000651:10;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22378206	22378782	.	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000651;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000651;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000651:11;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22378206	22378504	.	+	2	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000651;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000651;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000651:9;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	22378502	22378504	.	+	0	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000651;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000651;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=stop_codon:HG003_chrY_T0000651;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22364334	22378782	100	+	.	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_G0000234;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=HG003_chrY_T0000652;Name=RBMY1D
HG003_chrY	CAT	exon	22364334	22364481	.	+	.	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000652;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000652:0;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22364482	22366342	.	+	.	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000652;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000652:0;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22366343	22366455	.	+	.	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000652;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000652:1;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22366347	22366455	.	+	0	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000652;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000652:0;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	22366347	22366349	.	+	0	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000652;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=start_codon:HG003_chrY_T0000652;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22366456	22366929	.	+	.	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000652;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000652:1;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22366930	22367033	.	+	.	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000652;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000652:2;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22366930	22367033	.	+	2	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000652;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000652:1;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22367034	22370052	.	+	.	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000652;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000652:2;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22370053	22370230	.	+	.	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000652;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000652:3;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22370053	22370230	.	+	0	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000652;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000652:2;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22370231	22372145	.	+	.	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000652;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000652:3;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22372146	22372298	.	+	.	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000652;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000652:4;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22372146	22372298	.	+	2	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000652;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000652:3;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22372299	22374308	.	+	.	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000652;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000652:4;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22374309	22374423	.	+	.	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000652;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000652:5;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22374309	22374423	.	+	2	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000652;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000652:4;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22374424	22375378	.	+	.	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000652;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000652:5;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22375379	22375489	.	+	.	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000652;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000652:6;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22375379	22375489	.	+	1	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000652;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000652:5;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22375490	22377705	.	+	.	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000652;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000652:6;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22377706	22377794	.	+	.	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000652;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000652:7;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22377706	22377794	.	+	1	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000652;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000652:6;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22377795	22378205	.	+	.	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000652;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000652:7;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22378206	22378782	.	+	.	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000652;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000652:8;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22378206	22378504	.	+	2	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000652;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000652:7;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	22378502	22378504	.	+	0	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000652;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=stop_codon:HG003_chrY_T0000652;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22364334	22380200	100	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_G0000234;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=HG003_chrY_T0000653;Name=RBMY1D
HG003_chrY	CAT	exon	22364334	22364481	.	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000653;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000653:0;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22364482	22366342	.	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000653;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000653:0;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22366343	22366455	.	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000653;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000653:1;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22366347	22366455	.	+	0	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000653;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000653:0;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	22366347	22366349	.	+	0	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000653;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=start_codon:HG003_chrY_T0000653;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22366456	22366929	.	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000653;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000653:1;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22366930	22367033	.	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000653;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000653:2;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22366930	22367033	.	+	2	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000653;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000653:1;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22367034	22370052	.	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000653;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000653:2;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22370053	22370230	.	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000653;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000653:3;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22370053	22370230	.	+	0	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000653;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000653:2;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22370231	22372145	.	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000653;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000653:3;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22372146	22372298	.	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000653;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000653:4;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22372146	22372298	.	+	2	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000653;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000653:3;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22372299	22374308	.	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000653;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000653:4;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22374309	22374423	.	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000653;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000653:5;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22374309	22374423	.	+	2	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000653;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000653:4;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22374424	22375378	.	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000653;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000653:5;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22375379	22375489	.	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000653;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000653:6;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22375379	22375489	.	+	1	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000653;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000653:5;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22375490	22375930	.	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000653;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000653:6;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22375931	22376041	.	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000653;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000653:7;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22375931	22376041	.	+	1	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000653;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000653:6;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22376042	22376475	.	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000653;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000653:7;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22376476	22376586	.	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000653;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000653:8;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22376476	22376586	.	+	1	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000653;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000653:7;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22376587	22377507	.	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000653;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000653:8;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22377508	22377618	.	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000653;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000653:9;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22377508	22377618	.	+	1	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000653;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000653:8;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22377619	22377705	.	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000653;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000653:9;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22377706	22377794	.	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000653;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000653:10;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22377706	22377794	.	+	1	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000653;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000653:9;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22377795	22379041	.	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000653;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000653:10;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22379042	22380200	.	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000653;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000653:11;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22379042	22379049	.	+	2	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000653;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000653:10;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	22379047	22379049	.	+	0	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000653;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=stop_codon:HG003_chrY_T0000653;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22364334	22390425	100	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_G0000234;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=HG003_chrY_T0000654;Name=RBMY1D
HG003_chrY	CAT	exon	22364334	22364481	.	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000654;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000654:0;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22364482	22366342	.	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000654;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000654:0;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22366343	22366455	.	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000654;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000654:1;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22366347	22366455	.	+	0	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000654;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000654:0;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	22366347	22366349	.	+	0	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000654;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=start_codon:HG003_chrY_T0000654;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22366456	22366929	.	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000654;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000654:1;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22366930	22367033	.	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000654;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000654:2;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22366930	22367033	.	+	2	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000654;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000654:1;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22367034	22370052	.	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000654;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000654:2;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22370053	22370230	.	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000654;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000654:3;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22370053	22370230	.	+	0	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000654;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000654:2;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22370231	22372145	.	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000654;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000654:3;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22372146	22372298	.	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000654;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000654:4;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22372146	22372298	.	+	2	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000654;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000654:3;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22372299	22374308	.	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000654;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000654:4;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22374309	22374423	.	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000654;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000654:5;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22374309	22374423	.	+	2	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000654;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000654:4;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22374424	22375378	.	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000654;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000654:5;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22375379	22375489	.	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000654;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000654:6;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22375379	22375489	.	+	1	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000654;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000654:5;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22375490	22375930	.	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000654;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000654:6;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22375931	22376041	.	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000654;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000654:7;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22375931	22376041	.	+	1	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000654;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000654:6;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22376042	22376475	.	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000654;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000654:7;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22376476	22376586	.	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000654;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000654:8;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22376476	22376586	.	+	1	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000654;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000654:7;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22376587	22377507	.	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000654;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000654:8;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22377508	22377618	.	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000654;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000654:9;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22377508	22377618	.	+	1	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000654;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000654:8;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22377619	22377705	.	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000654;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000654:9;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22377706	22377794	.	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000654;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000654:10;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22377706	22377794	.	+	1	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000654;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000654:9;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22377795	22389041	.	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000654;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000654:10;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22389042	22390425	.	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000654;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000654:11;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22389042	22389118	.	+	2	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000654;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000654:10;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	22389116	22389118	.	+	0	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000654;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=stop_codon:HG003_chrY_T0000654;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22366944	22378782	100	+	.	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000655;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_G0000234;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=HG003_chrY_T0000655;Name=RBMY1D
HG003_chrY	CAT	exon	22366944	22367033	.	+	.	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000655;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000655;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000655:0;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22367034	22372145	.	+	.	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000655;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000655;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000655:0;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22372146	22372298	.	+	.	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000655;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000655;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000655:1;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22372175	22372298	.	+	0	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000655;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000655;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000655:0;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	22372175	22372177	.	+	0	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000655;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000655;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=start_codon:HG003_chrY_T0000655;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22372299	22374308	.	+	.	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000655;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000655;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000655:1;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22374309	22374423	.	+	.	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000655;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000655;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000655:2;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22374309	22374423	.	+	2	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000655;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000655;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000655:1;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22374424	22375378	.	+	.	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000655;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000655;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000655:2;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22375379	22375489	.	+	.	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000655;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000655;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000655:3;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22375379	22375489	.	+	1	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000655;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000655;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000655:2;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22375490	22375930	.	+	.	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000655;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000655;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000655:3;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22375931	22376041	.	+	.	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000655;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000655;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000655:4;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22375931	22376041	.	+	1	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000655;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000655;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000655:3;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22376042	22376475	.	+	.	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000655;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000655;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000655:4;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22376476	22376586	.	+	.	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000655;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000655;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000655:5;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22376476	22376586	.	+	1	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000655;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000655;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000655:4;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22376587	22377507	.	+	.	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000655;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000655;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000655:5;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22377508	22377618	.	+	.	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000655;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000655;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000655:6;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22377508	22377618	.	+	1	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000655;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000655;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000655:5;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22377619	22377705	.	+	.	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000655;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000655;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000655:6;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22377706	22377794	.	+	.	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000655;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000655;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000655:7;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22377706	22377794	.	+	1	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000655;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000655;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000655:6;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22377795	22378205	.	+	.	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000655;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000655;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:HG003_chrY_T0000655:7;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22378206	22378782	.	+	.	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000655;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000655;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:HG003_chrY_T0000655:8;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22378206	22378504	.	+	2	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000655;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000655;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0000655:7;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	22378502	22378504	.	+	0	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000655;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000655;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=stop_codon:HG003_chrY_T0000655;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22398483	22400736	.	-	.	source_gene_common_name=LOC105379266;source_gene=hg002_chrY_paternal_465;alternative_source_transcripts=hg002_chrY_paternal_465.1;gene_id=HG003_chrY_G0000235;gene_biotype=lncRNA;gene_name=LOC105379266;gene_sources=liftoff,transMap;ID=HG003_chrY_G0000235;Name=LOC105379266
HG003_chrY	CAT	transcript	22398483	22400736	1000	-	.	source_transcript=hg002_chrY_paternal_465.1;source_transcript_name=hg002_chrY_paternal_465.1;source_gene=hg002_chrY_paternal_465;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_465;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_465.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_465.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379266;alternative_source_transcripts=hg002_chrY_paternal_465.1;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000656;gene_id=HG003_chrY_G0000235;Parent=HG003_chrY_G0000235;transcript_name=hg002_chrY_paternal_465.1;gene_name=LOC105379266;ID=HG003_chrY_T0000656;Name=LOC105379266
HG003_chrY	CAT	exon	22398483	22399763	.	-	.	source_transcript=hg002_chrY_paternal_465.1;source_transcript_name=hg002_chrY_paternal_465.1;source_gene=hg002_chrY_paternal_465;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_465;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_465.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_465.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379266;alternative_source_transcripts=hg002_chrY_paternal_465.1;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000656;gene_id=HG003_chrY_G0000235;Parent=HG003_chrY_T0000656;transcript_name=hg002_chrY_paternal_465.1;gene_name=LOC105379266;ID=exon:HG003_chrY_T0000656:0;Name=LOC105379266;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22399764	22400441	.	-	.	source_transcript=hg002_chrY_paternal_465.1;source_transcript_name=hg002_chrY_paternal_465.1;source_gene=hg002_chrY_paternal_465;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_465;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_465.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_465.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379266;alternative_source_transcripts=hg002_chrY_paternal_465.1;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000656;gene_id=HG003_chrY_G0000235;Parent=HG003_chrY_T0000656;transcript_name=hg002_chrY_paternal_465.1;gene_name=LOC105379266;ID=intron:HG003_chrY_T0000656:0;Name=LOC105379266;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22400442	22400736	.	-	.	source_transcript=hg002_chrY_paternal_465.1;source_transcript_name=hg002_chrY_paternal_465.1;source_gene=hg002_chrY_paternal_465;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_465;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_465.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_465.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379266;alternative_source_transcripts=hg002_chrY_paternal_465.1;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0000656;gene_id=HG003_chrY_G0000235;Parent=HG003_chrY_T0000656;transcript_name=hg002_chrY_paternal_465.1;gene_name=LOC105379266;ID=exon:HG003_chrY_T0000656:1;Name=LOC105379266;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22413042	22424108	.	-	.	source_gene_common_name=TTTY13;source_gene=hg002_chrY_paternal_466;alternative_source_transcripts=hg002_chrY_paternal_466.1,hg002_chrY_paternal_466.1;gene_id=HG003_chrY_G0000236;gene_biotype=lncRNA;gene_name=TTTY13;gene_sources=liftoff;ID=HG003_chrY_G0000236;Name=TTTY13
HG003_chrY	CAT	transcript	22413042	22424108	1000	-	.	source_transcript=hg002_chrY_paternal_466.1;source_transcript_name=hg002_chrY_paternal_466.1;source_gene=hg002_chrY_paternal_466;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_466;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_466.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_466.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=hg002_chrY_paternal_466.1,hg002_chrY_paternal_466.1;transcript_id=HG003_chrY_T0000657;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_G0000236;transcript_name=hg002_chrY_paternal_466.1;gene_name=TTTY13;ID=HG003_chrY_T0000657;Name=TTTY13
HG003_chrY	CAT	exon	22413042	22413104	.	-	.	source_transcript=hg002_chrY_paternal_466.1;source_transcript_name=hg002_chrY_paternal_466.1;source_gene=hg002_chrY_paternal_466;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_466;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_466.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_466.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=hg002_chrY_paternal_466.1,hg002_chrY_paternal_466.1;transcript_id=HG003_chrY_T0000657;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000657;transcript_name=hg002_chrY_paternal_466.1;gene_name=TTTY13;ID=exon:HG003_chrY_T0000657:0;Name=TTTY13;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22413105	22414224	.	-	.	source_transcript=hg002_chrY_paternal_466.1;source_transcript_name=hg002_chrY_paternal_466.1;source_gene=hg002_chrY_paternal_466;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_466;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_466.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_466.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=hg002_chrY_paternal_466.1,hg002_chrY_paternal_466.1;transcript_id=HG003_chrY_T0000657;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000657;transcript_name=hg002_chrY_paternal_466.1;gene_name=TTTY13;ID=intron:HG003_chrY_T0000657:0;Name=TTTY13;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22414225	22414316	.	-	.	source_transcript=hg002_chrY_paternal_466.1;source_transcript_name=hg002_chrY_paternal_466.1;source_gene=hg002_chrY_paternal_466;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_466;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_466.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_466.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=hg002_chrY_paternal_466.1,hg002_chrY_paternal_466.1;transcript_id=HG003_chrY_T0000657;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000657;transcript_name=hg002_chrY_paternal_466.1;gene_name=TTTY13;ID=exon:HG003_chrY_T0000657:1;Name=TTTY13;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22414317	22416942	.	-	.	source_transcript=hg002_chrY_paternal_466.1;source_transcript_name=hg002_chrY_paternal_466.1;source_gene=hg002_chrY_paternal_466;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_466;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_466.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_466.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=hg002_chrY_paternal_466.1,hg002_chrY_paternal_466.1;transcript_id=HG003_chrY_T0000657;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000657;transcript_name=hg002_chrY_paternal_466.1;gene_name=TTTY13;ID=intron:HG003_chrY_T0000657:1;Name=TTTY13;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22416943	22417104	.	-	.	source_transcript=hg002_chrY_paternal_466.1;source_transcript_name=hg002_chrY_paternal_466.1;source_gene=hg002_chrY_paternal_466;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_466;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_466.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_466.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=hg002_chrY_paternal_466.1,hg002_chrY_paternal_466.1;transcript_id=HG003_chrY_T0000657;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000657;transcript_name=hg002_chrY_paternal_466.1;gene_name=TTTY13;ID=exon:HG003_chrY_T0000657:2;Name=TTTY13;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22417105	22418713	.	-	.	source_transcript=hg002_chrY_paternal_466.1;source_transcript_name=hg002_chrY_paternal_466.1;source_gene=hg002_chrY_paternal_466;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_466;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_466.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_466.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=hg002_chrY_paternal_466.1,hg002_chrY_paternal_466.1;transcript_id=HG003_chrY_T0000657;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000657;transcript_name=hg002_chrY_paternal_466.1;gene_name=TTTY13;ID=intron:HG003_chrY_T0000657:2;Name=TTTY13;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22418714	22418812	.	-	.	source_transcript=hg002_chrY_paternal_466.1;source_transcript_name=hg002_chrY_paternal_466.1;source_gene=hg002_chrY_paternal_466;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_466;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_466.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_466.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=hg002_chrY_paternal_466.1,hg002_chrY_paternal_466.1;transcript_id=HG003_chrY_T0000657;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000657;transcript_name=hg002_chrY_paternal_466.1;gene_name=TTTY13;ID=exon:HG003_chrY_T0000657:3;Name=TTTY13;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22418813	22419407	.	-	.	source_transcript=hg002_chrY_paternal_466.1;source_transcript_name=hg002_chrY_paternal_466.1;source_gene=hg002_chrY_paternal_466;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_466;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_466.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_466.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=hg002_chrY_paternal_466.1,hg002_chrY_paternal_466.1;transcript_id=HG003_chrY_T0000657;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000657;transcript_name=hg002_chrY_paternal_466.1;gene_name=TTTY13;ID=intron:HG003_chrY_T0000657:3;Name=TTTY13;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22419408	22419569	.	-	.	source_transcript=hg002_chrY_paternal_466.1;source_transcript_name=hg002_chrY_paternal_466.1;source_gene=hg002_chrY_paternal_466;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_466;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_466.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_466.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=hg002_chrY_paternal_466.1,hg002_chrY_paternal_466.1;transcript_id=HG003_chrY_T0000657;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000657;transcript_name=hg002_chrY_paternal_466.1;gene_name=TTTY13;ID=exon:HG003_chrY_T0000657:4;Name=TTTY13;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22419570	22424027	.	-	.	source_transcript=hg002_chrY_paternal_466.1;source_transcript_name=hg002_chrY_paternal_466.1;source_gene=hg002_chrY_paternal_466;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_466;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_466.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_466.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=hg002_chrY_paternal_466.1,hg002_chrY_paternal_466.1;transcript_id=HG003_chrY_T0000657;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000657;transcript_name=hg002_chrY_paternal_466.1;gene_name=TTTY13;ID=intron:HG003_chrY_T0000657:4;Name=TTTY13;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22424028	22424108	.	-	.	source_transcript=hg002_chrY_paternal_466.1;source_transcript_name=hg002_chrY_paternal_466.1;source_gene=hg002_chrY_paternal_466;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_466;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_466.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_466.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=hg002_chrY_paternal_466.1,hg002_chrY_paternal_466.1;transcript_id=HG003_chrY_T0000657;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000657;transcript_name=hg002_chrY_paternal_466.1;gene_name=TTTY13;ID=exon:HG003_chrY_T0000657:5;Name=TTTY13;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22598867	22613519	.	-	.	source_gene_common_name=LOC105377236;source_gene=hg002_chrY_paternal_472;alternative_source_transcripts=hg002_chrY_paternal_472.1,hg002_chrY_paternal_472.1;gene_id=HG003_chrY_G0000237;gene_biotype=lncRNA;gene_name=LOC105377236;gene_sources=liftoff;ID=HG003_chrY_G0000237;Name=LOC105377236
HG003_chrY	CAT	transcript	22598867	22612291	1000	-	.	source_transcript=hg002_chrY_paternal_472.1;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.1,hg002_chrY_paternal_472.1;transcript_id=HG003_chrY_T0000658;gene_id=HG003_chrY_G0000237;Parent=HG003_chrY_G0000237;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=HG003_chrY_T0000658;Name=LOC105377236
HG003_chrY	CAT	exon	22598867	22600410	.	-	.	source_transcript=hg002_chrY_paternal_472.1;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.1,hg002_chrY_paternal_472.1;transcript_id=HG003_chrY_T0000658;gene_id=HG003_chrY_G0000237;Parent=HG003_chrY_T0000658;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=exon:HG003_chrY_T0000658:0;Name=LOC105377236;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22600411	22607789	.	-	.	source_transcript=hg002_chrY_paternal_472.1;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.1,hg002_chrY_paternal_472.1;transcript_id=HG003_chrY_T0000658;gene_id=HG003_chrY_G0000237;Parent=HG003_chrY_T0000658;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=intron:HG003_chrY_T0000658:0;Name=LOC105377236;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22607790	22607925	.	-	.	source_transcript=hg002_chrY_paternal_472.1;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.1,hg002_chrY_paternal_472.1;transcript_id=HG003_chrY_T0000658;gene_id=HG003_chrY_G0000237;Parent=HG003_chrY_T0000658;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=exon:HG003_chrY_T0000658:1;Name=LOC105377236;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22607926	22610920	.	-	.	source_transcript=hg002_chrY_paternal_472.1;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.1,hg002_chrY_paternal_472.1;transcript_id=HG003_chrY_T0000658;gene_id=HG003_chrY_G0000237;Parent=HG003_chrY_T0000658;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=intron:HG003_chrY_T0000658:1;Name=LOC105377236;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22610921	22611082	.	-	.	source_transcript=hg002_chrY_paternal_472.1;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.1,hg002_chrY_paternal_472.1;transcript_id=HG003_chrY_T0000658;gene_id=HG003_chrY_G0000237;Parent=HG003_chrY_T0000658;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=exon:HG003_chrY_T0000658:2;Name=LOC105377236;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22611083	22611326	.	-	.	source_transcript=hg002_chrY_paternal_472.1;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.1,hg002_chrY_paternal_472.1;transcript_id=HG003_chrY_T0000658;gene_id=HG003_chrY_G0000237;Parent=HG003_chrY_T0000658;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=intron:HG003_chrY_T0000658:2;Name=LOC105377236;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22611327	22612291	.	-	.	source_transcript=hg002_chrY_paternal_472.1;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.1,hg002_chrY_paternal_472.1;transcript_id=HG003_chrY_T0000658;gene_id=HG003_chrY_G0000237;Parent=HG003_chrY_T0000658;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=exon:HG003_chrY_T0000658:3;Name=LOC105377236;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22598867	22612291	1000	-	.	source_transcript=hg002_chrY_paternal_472.2;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.2,hg002_chrY_paternal_472.2;transcript_id=HG003_chrY_T0000659;gene_id=HG003_chrY_G0000237;Parent=HG003_chrY_G0000237;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=HG003_chrY_T0000659;Name=LOC105377236
HG003_chrY	CAT	exon	22598867	22600410	.	-	.	source_transcript=hg002_chrY_paternal_472.2;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.2,hg002_chrY_paternal_472.2;transcript_id=HG003_chrY_T0000659;gene_id=HG003_chrY_G0000237;Parent=HG003_chrY_T0000659;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=exon:HG003_chrY_T0000659:0;Name=LOC105377236;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22600411	22607789	.	-	.	source_transcript=hg002_chrY_paternal_472.2;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.2,hg002_chrY_paternal_472.2;transcript_id=HG003_chrY_T0000659;gene_id=HG003_chrY_G0000237;Parent=HG003_chrY_T0000659;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=intron:HG003_chrY_T0000659:0;Name=LOC105377236;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22607790	22607925	.	-	.	source_transcript=hg002_chrY_paternal_472.2;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.2,hg002_chrY_paternal_472.2;transcript_id=HG003_chrY_T0000659;gene_id=HG003_chrY_G0000237;Parent=HG003_chrY_T0000659;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=exon:HG003_chrY_T0000659:1;Name=LOC105377236;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22607926	22610920	.	-	.	source_transcript=hg002_chrY_paternal_472.2;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.2,hg002_chrY_paternal_472.2;transcript_id=HG003_chrY_T0000659;gene_id=HG003_chrY_G0000237;Parent=HG003_chrY_T0000659;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=intron:HG003_chrY_T0000659:1;Name=LOC105377236;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22610921	22610995	.	-	.	source_transcript=hg002_chrY_paternal_472.2;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.2,hg002_chrY_paternal_472.2;transcript_id=HG003_chrY_T0000659;gene_id=HG003_chrY_G0000237;Parent=HG003_chrY_T0000659;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=exon:HG003_chrY_T0000659:2;Name=LOC105377236;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22610996	22611326	.	-	.	source_transcript=hg002_chrY_paternal_472.2;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.2,hg002_chrY_paternal_472.2;transcript_id=HG003_chrY_T0000659;gene_id=HG003_chrY_G0000237;Parent=HG003_chrY_T0000659;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=intron:HG003_chrY_T0000659:2;Name=LOC105377236;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22611327	22612291	.	-	.	source_transcript=hg002_chrY_paternal_472.2;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.2,hg002_chrY_paternal_472.2;transcript_id=HG003_chrY_T0000659;gene_id=HG003_chrY_G0000237;Parent=HG003_chrY_T0000659;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=exon:HG003_chrY_T0000659:3;Name=LOC105377236;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22598867	22613519	1000	-	.	source_transcript=hg002_chrY_paternal_472.3;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.3,hg002_chrY_paternal_472.3;transcript_id=HG003_chrY_T0000660;gene_id=HG003_chrY_G0000237;Parent=HG003_chrY_G0000237;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=HG003_chrY_T0000660;Name=LOC105377236
HG003_chrY	CAT	exon	22598867	22600410	.	-	.	source_transcript=hg002_chrY_paternal_472.3;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.3,hg002_chrY_paternal_472.3;transcript_id=HG003_chrY_T0000660;gene_id=HG003_chrY_G0000237;Parent=HG003_chrY_T0000660;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=exon:HG003_chrY_T0000660:0;Name=LOC105377236;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22600411	22607789	.	-	.	source_transcript=hg002_chrY_paternal_472.3;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.3,hg002_chrY_paternal_472.3;transcript_id=HG003_chrY_T0000660;gene_id=HG003_chrY_G0000237;Parent=HG003_chrY_T0000660;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=intron:HG003_chrY_T0000660:0;Name=LOC105377236;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22607790	22607925	.	-	.	source_transcript=hg002_chrY_paternal_472.3;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.3,hg002_chrY_paternal_472.3;transcript_id=HG003_chrY_T0000660;gene_id=HG003_chrY_G0000237;Parent=HG003_chrY_T0000660;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=exon:HG003_chrY_T0000660:1;Name=LOC105377236;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22607926	22610920	.	-	.	source_transcript=hg002_chrY_paternal_472.3;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.3,hg002_chrY_paternal_472.3;transcript_id=HG003_chrY_T0000660;gene_id=HG003_chrY_G0000237;Parent=HG003_chrY_T0000660;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=intron:HG003_chrY_T0000660:1;Name=LOC105377236;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22610921	22611082	.	-	.	source_transcript=hg002_chrY_paternal_472.3;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.3,hg002_chrY_paternal_472.3;transcript_id=HG003_chrY_T0000660;gene_id=HG003_chrY_G0000237;Parent=HG003_chrY_T0000660;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=exon:HG003_chrY_T0000660:2;Name=LOC105377236;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22611083	22611326	.	-	.	source_transcript=hg002_chrY_paternal_472.3;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.3,hg002_chrY_paternal_472.3;transcript_id=HG003_chrY_T0000660;gene_id=HG003_chrY_G0000237;Parent=HG003_chrY_T0000660;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=intron:HG003_chrY_T0000660:2;Name=LOC105377236;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22611327	22612112	.	-	.	source_transcript=hg002_chrY_paternal_472.3;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.3,hg002_chrY_paternal_472.3;transcript_id=HG003_chrY_T0000660;gene_id=HG003_chrY_G0000237;Parent=HG003_chrY_T0000660;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=exon:HG003_chrY_T0000660:3;Name=LOC105377236;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22612113	22613363	.	-	.	source_transcript=hg002_chrY_paternal_472.3;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.3,hg002_chrY_paternal_472.3;transcript_id=HG003_chrY_T0000660;gene_id=HG003_chrY_G0000237;Parent=HG003_chrY_T0000660;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=intron:HG003_chrY_T0000660:3;Name=LOC105377236;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22613364	22613519	.	-	.	source_transcript=hg002_chrY_paternal_472.3;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.3,hg002_chrY_paternal_472.3;transcript_id=HG003_chrY_T0000660;gene_id=HG003_chrY_G0000237;Parent=HG003_chrY_T0000660;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=exon:HG003_chrY_T0000660:4;Name=LOC105377236;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22625982	22628870	.	+	.	source_gene_common_name=LOC105377237;source_gene=hg002_chrY_paternal_474;alternative_source_transcripts=hg002_chrY_paternal_474.1,hg002_chrY_paternal_474.1;gene_id=HG003_chrY_G0000238;gene_biotype=lncRNA;gene_name=LOC105377237;gene_sources=liftoff;ID=HG003_chrY_G0000238;Name=LOC105377237
HG003_chrY	CAT	transcript	22625982	22628870	1000	+	.	source_transcript=hg002_chrY_paternal_474.1;source_transcript_name=hg002_chrY_paternal_474.1;source_gene=hg002_chrY_paternal_474;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_474;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_474.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_474.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377237;alternative_source_transcripts=hg002_chrY_paternal_474.1,hg002_chrY_paternal_474.1;transcript_id=HG003_chrY_T0000661;gene_id=HG003_chrY_G0000238;Parent=HG003_chrY_G0000238;transcript_name=hg002_chrY_paternal_474.1;gene_name=LOC105377237;ID=HG003_chrY_T0000661;Name=LOC105377237
HG003_chrY	CAT	exon	22625982	22627219	.	+	.	source_transcript=hg002_chrY_paternal_474.1;source_transcript_name=hg002_chrY_paternal_474.1;source_gene=hg002_chrY_paternal_474;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_474;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_474.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_474.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377237;alternative_source_transcripts=hg002_chrY_paternal_474.1,hg002_chrY_paternal_474.1;transcript_id=HG003_chrY_T0000661;gene_id=HG003_chrY_G0000238;Parent=HG003_chrY_T0000661;transcript_name=hg002_chrY_paternal_474.1;gene_name=LOC105377237;ID=exon:HG003_chrY_T0000661:0;Name=LOC105377237;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22627220	22628391	.	+	.	source_transcript=hg002_chrY_paternal_474.1;source_transcript_name=hg002_chrY_paternal_474.1;source_gene=hg002_chrY_paternal_474;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_474;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_474.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_474.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377237;alternative_source_transcripts=hg002_chrY_paternal_474.1,hg002_chrY_paternal_474.1;transcript_id=HG003_chrY_T0000661;gene_id=HG003_chrY_G0000238;Parent=HG003_chrY_T0000661;transcript_name=hg002_chrY_paternal_474.1;gene_name=LOC105377237;ID=intron:HG003_chrY_T0000661:0;Name=LOC105377237;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22628392	22628551	.	+	.	source_transcript=hg002_chrY_paternal_474.1;source_transcript_name=hg002_chrY_paternal_474.1;source_gene=hg002_chrY_paternal_474;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_474;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_474.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_474.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377237;alternative_source_transcripts=hg002_chrY_paternal_474.1,hg002_chrY_paternal_474.1;transcript_id=HG003_chrY_T0000661;gene_id=HG003_chrY_G0000238;Parent=HG003_chrY_T0000661;transcript_name=hg002_chrY_paternal_474.1;gene_name=LOC105377237;ID=exon:HG003_chrY_T0000661:1;Name=LOC105377237;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22628552	22628711	.	+	.	source_transcript=hg002_chrY_paternal_474.1;source_transcript_name=hg002_chrY_paternal_474.1;source_gene=hg002_chrY_paternal_474;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_474;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_474.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_474.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377237;alternative_source_transcripts=hg002_chrY_paternal_474.1,hg002_chrY_paternal_474.1;transcript_id=HG003_chrY_T0000661;gene_id=HG003_chrY_G0000238;Parent=HG003_chrY_T0000661;transcript_name=hg002_chrY_paternal_474.1;gene_name=LOC105377237;ID=intron:HG003_chrY_T0000661:1;Name=LOC105377237;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22628712	22628870	.	+	.	source_transcript=hg002_chrY_paternal_474.1;source_transcript_name=hg002_chrY_paternal_474.1;source_gene=hg002_chrY_paternal_474;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_474;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_474.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_474.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377237;alternative_source_transcripts=hg002_chrY_paternal_474.1,hg002_chrY_paternal_474.1;transcript_id=HG003_chrY_T0000661;gene_id=HG003_chrY_G0000238;Parent=HG003_chrY_T0000661;transcript_name=hg002_chrY_paternal_474.1;gene_name=LOC105377237;ID=exon:HG003_chrY_T0000661:2;Name=LOC105377237;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22669795	22684243	.	-	.	source_gene_common_name=RBMY1A1;source_gene=hg002_chrY_paternal_475;alternative_source_transcripts=hg002_chrY_paternal_475.1,hg002_chrY_paternal_475.1;gene_id=HG003_chrY_G0000239;gene_biotype=protein_coding;gene_name=RBMY1A1;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000239;Name=RBMY1A1
HG003_chrY	CAT	transcript	22669795	22684243	1000	-	.	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1,hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000662;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_G0000239;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=HG003_chrY_T0000662;Name=RBMY1A1
HG003_chrY	CAT	exon	22669795	22670371	.	-	.	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1,hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000662;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000662;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000662:0;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22670073	22670371	.	-	2	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1,hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000662;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000662;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000662:0;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	22670073	22670075	.	-	0	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1,hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000662;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000662;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=stop_codon:HG003_chrY_T0000662;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22670372	22670782	.	-	.	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1,hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000662;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000662;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000662:0;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22670783	22670871	.	-	.	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1,hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000662;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000662;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000662:1;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22670783	22670871	.	-	1	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1,hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000662;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000662;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000662:1;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22670872	22671990	.	-	.	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1,hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000662;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000662;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000662:1;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22671991	22672101	.	-	.	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1,hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000662;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000662;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000662:2;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22671991	22672101	.	-	1	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1,hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000662;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000662;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000662:2;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22672102	22672535	.	-	.	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1,hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000662;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000662;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000662:2;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22672536	22672646	.	-	.	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1,hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000662;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000662;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000662:3;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22672536	22672646	.	-	1	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1,hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000662;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000662;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000662:3;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22672647	22673087	.	-	.	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1,hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000662;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000662;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000662:3;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22673088	22673198	.	-	.	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1,hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000662;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000662;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000662:4;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22673088	22673198	.	-	1	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1,hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000662;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000662;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000662:4;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22673199	22674153	.	-	.	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1,hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000662;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000662;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000662:4;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22674154	22674268	.	-	.	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1,hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000662;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000662;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000662:5;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22674154	22674268	.	-	2	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1,hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000662;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000662;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000662:5;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22674269	22676278	.	-	.	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1,hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000662;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000662;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000662:5;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22676279	22676431	.	-	.	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1,hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000662;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000662;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000662:6;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22676279	22676431	.	-	2	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1,hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000662;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000662;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000662:6;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22676432	22678346	.	-	.	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1,hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000662;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000662;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000662:6;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22678347	22678524	.	-	.	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1,hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000662;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000662;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000662:7;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22678347	22678524	.	-	0	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1,hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000662;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000662;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000662:7;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22678525	22681543	.	-	.	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1,hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000662;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000662;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000662:7;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22681544	22681647	.	-	.	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1,hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000662;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000662;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000662:8;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22681544	22681647	.	-	2	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1,hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000662;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000662;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000662:8;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22681648	22682121	.	-	.	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1,hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000662;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000662;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000662:8;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22682122	22682234	.	-	.	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1,hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000662;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000662;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000662:9;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22682122	22682230	.	-	0	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1,hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000662;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000662;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000662:9;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	22682228	22682230	.	-	0	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1,hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000662;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000662;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=start_codon:HG003_chrY_T0000662;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22682235	22684095	.	-	.	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1,hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000662;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000662;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000662:9;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22684096	22684243	.	-	.	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1,hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000662;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000662;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000662:10;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22669795	22684243	1000	-	.	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2,hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000663;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_G0000239;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=HG003_chrY_T0000663;Name=RBMY1A1
HG003_chrY	CAT	exon	22669795	22670371	.	-	.	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2,hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000663;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000663;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000663:0;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22670073	22670371	.	-	2	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2,hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000663;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000663;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000663:0;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	22670073	22670075	.	-	0	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2,hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000663;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000663;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=stop_codon:HG003_chrY_T0000663;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22670372	22670782	.	-	.	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2,hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000663;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000663;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000663:0;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22670783	22670871	.	-	.	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2,hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000663;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000663;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000663:1;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22670783	22670871	.	-	1	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2,hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000663;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000663;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000663:1;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22670872	22670958	.	-	.	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2,hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000663;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000663;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000663:1;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22670959	22671069	.	-	.	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2,hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000663;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000663;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000663:2;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22670959	22671069	.	-	1	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2,hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000663;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000663;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000663:2;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22671070	22671990	.	-	.	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2,hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000663;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000663;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000663:2;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22671991	22672101	.	-	.	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2,hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000663;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000663;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000663:3;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22671991	22672101	.	-	1	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2,hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000663;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000663;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000663:3;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22672102	22672535	.	-	.	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2,hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000663;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000663;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000663:3;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22672536	22672646	.	-	.	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2,hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000663;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000663;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000663:4;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22672536	22672646	.	-	1	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2,hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000663;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000663;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000663:4;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22672647	22673087	.	-	.	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2,hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000663;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000663;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000663:4;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22673088	22673198	.	-	.	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2,hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000663;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000663;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000663:5;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22673088	22673198	.	-	1	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2,hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000663;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000663;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000663:5;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22673199	22674153	.	-	.	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2,hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000663;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000663;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000663:5;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22674154	22674268	.	-	.	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2,hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000663;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000663;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000663:6;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22674154	22674268	.	-	2	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2,hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000663;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000663;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000663:6;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22674269	22676278	.	-	.	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2,hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000663;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000663;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000663:6;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22676279	22676431	.	-	.	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2,hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000663;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000663;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000663:7;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22676279	22676402	.	-	0	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2,hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000663;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000663;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000663:7;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	22676400	22676402	.	-	0	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2,hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000663;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000663;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=start_codon:HG003_chrY_T0000663;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22676432	22681543	.	-	.	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2,hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000663;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000663;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000663:7;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22681544	22681647	.	-	.	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2,hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000663;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000663;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000663:8;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22681648	22682121	.	-	.	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2,hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000663;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000663;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000663:8;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22682122	22682234	.	-	.	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2,hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000663;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000663;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000663:9;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22682235	22684095	.	-	.	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2,hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000663;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000663;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000663:9;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22684096	22684243	.	-	.	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2,hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000663;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000663;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000663:10;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22669795	22684243	1000	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3,hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_G0000239;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=HG003_chrY_T0000664;Name=RBMY1A1
HG003_chrY	CAT	exon	22669795	22670371	.	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3,hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000664;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000664:0;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22670073	22670371	.	-	2	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3,hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000664;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000664:0;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	22670073	22670075	.	-	0	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3,hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000664;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=stop_codon:HG003_chrY_T0000664;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22670372	22670782	.	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3,hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000664;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000664:0;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22670783	22670871	.	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3,hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000664;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000664:1;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22670783	22670871	.	-	1	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3,hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000664;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000664:1;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22670872	22670958	.	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3,hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000664;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000664:1;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22670959	22671069	.	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3,hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000664;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000664:2;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22670959	22671069	.	-	1	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3,hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000664;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000664:2;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22671070	22671990	.	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3,hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000664;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000664:2;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22671991	22672101	.	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3,hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000664;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000664:3;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22671991	22672101	.	-	1	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3,hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000664;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000664:3;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22672102	22672535	.	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3,hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000664;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000664:3;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22672536	22672646	.	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3,hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000664;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000664:4;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22672536	22672646	.	-	1	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3,hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000664;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000664:4;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22672647	22673087	.	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3,hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000664;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000664:4;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22673088	22673198	.	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3,hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000664;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000664:5;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22673088	22673198	.	-	1	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3,hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000664;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000664:5;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22673199	22674153	.	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3,hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000664;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000664:5;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22674154	22674268	.	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3,hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000664;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000664:6;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22674154	22674268	.	-	2	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3,hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000664;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000664:6;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22674269	22676278	.	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3,hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000664;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000664:6;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22676279	22676431	.	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3,hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000664;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000664:7;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22676279	22676431	.	-	2	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3,hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000664;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000664:7;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22676432	22678346	.	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3,hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000664;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000664:7;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22678347	22678524	.	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3,hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000664;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000664:8;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22678347	22678524	.	-	0	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3,hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000664;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000664:8;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22678525	22681543	.	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3,hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000664;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000664:8;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22681544	22681647	.	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3,hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000664;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000664:9;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22681544	22681647	.	-	2	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3,hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000664;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000664:9;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22681648	22682121	.	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3,hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000664;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000664:9;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22682122	22682234	.	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3,hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000664;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000664:10;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22682122	22682230	.	-	0	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3,hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000664;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000664:10;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	22682228	22682230	.	-	0	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3,hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000664;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=start_codon:HG003_chrY_T0000664;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22682235	22684095	.	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3,hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000664;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000664:10;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22684096	22684243	.	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3,hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000664;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000664:11;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22670783	22684243	1000	-	.	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4,hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_G0000239;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=HG003_chrY_T0000665;Name=RBMY1A1
HG003_chrY	CAT	exon	22670783	22670871	.	-	.	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4,hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000665;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000665:0;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22670784	22670871	.	-	1	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4,hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000665;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000665:0;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	22670784	22670786	.	-	0	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4,hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000665;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=stop_codon:HG003_chrY_T0000665;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22670872	22670958	.	-	.	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4,hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000665;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000665:0;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22670959	22671069	.	-	.	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4,hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000665;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000665:1;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22670959	22671069	.	-	1	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4,hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000665;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000665:1;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22671070	22671990	.	-	.	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4,hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000665;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000665:1;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22671991	22672101	.	-	.	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4,hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000665;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000665:2;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22671991	22672101	.	-	1	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4,hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000665;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000665:2;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22672102	22672535	.	-	.	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4,hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000665;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000665:2;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22672536	22672646	.	-	.	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4,hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000665;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000665:3;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22672536	22672646	.	-	1	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4,hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000665;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000665:3;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22672647	22673087	.	-	.	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4,hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000665;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000665:3;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22673088	22673198	.	-	.	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4,hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000665;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000665:4;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22673088	22673198	.	-	1	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4,hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000665;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000665:4;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22673199	22674153	.	-	.	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4,hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000665;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000665:4;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22674154	22674268	.	-	.	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4,hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000665;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000665:5;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22674154	22674268	.	-	2	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4,hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000665;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000665:5;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22674269	22676278	.	-	.	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4,hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000665;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000665:5;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22676279	22676431	.	-	.	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4,hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000665;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000665:6;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22676279	22676431	.	-	2	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4,hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000665;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000665:6;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22676432	22678346	.	-	.	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4,hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000665;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000665:6;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22678347	22678524	.	-	.	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4,hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000665;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000665:7;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22678347	22678524	.	-	0	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4,hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000665;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000665:7;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22678525	22681543	.	-	.	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4,hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000665;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000665:7;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22681544	22681647	.	-	.	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4,hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000665;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000665:8;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22681544	22681647	.	-	2	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4,hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000665;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000665:8;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22681648	22682121	.	-	.	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4,hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000665;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000665:8;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22682122	22682234	.	-	.	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4,hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000665;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000665:9;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22682122	22682230	.	-	0	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4,hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000665;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0000665:9;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	22682228	22682230	.	-	0	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4,hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000665;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=start_codon:HG003_chrY_T0000665;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22682235	22684095	.	-	.	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4,hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000665;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0000665:9;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22684096	22684243	.	-	.	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4,hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000665;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0000665:10;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22691894	22707737	.	-	.	source_gene_common_name=RBMY1E;source_gene=hg002_chrY_paternal_477;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;gene_id=HG003_chrY_G0000240;gene_biotype=protein_coding;gene_name=RBMY1E;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000240;Name=RBMY1E
HG003_chrY	CAT	transcript	22691894	22707737	100	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_G0000240;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=HG003_chrY_T0000666;Name=RBMY1E
HG003_chrY	CAT	exon	22691894	22693075	.	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000666;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000666:0;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22693068	22693075	.	-	2	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000666;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000666:0;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	22693068	22693070	.	-	0	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000666;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=stop_codon:HG003_chrY_T0000666;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22693076	22694322	.	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000666;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000666:0;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22694323	22694411	.	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000666;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000666:1;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22694323	22694411	.	-	1	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000666;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000666:1;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22694412	22694497	.	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000666;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000666:1;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22694498	22694608	.	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000666;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000666:2;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22694498	22694608	.	-	1	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000666;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000666:2;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22694609	22695529	.	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000666;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000666:2;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22695530	22695640	.	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000666;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000666:3;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22695530	22695640	.	-	1	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000666;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000666:3;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22695641	22696074	.	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000666;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000666:3;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22696075	22696185	.	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000666;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000666:4;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22696075	22696185	.	-	1	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000666;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000666:4;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22696186	22696626	.	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000666;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000666:4;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22696627	22696737	.	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000666;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000666:5;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22696627	22696737	.	-	1	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000666;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000666:5;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22696738	22697692	.	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000666;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000666:5;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22697693	22697807	.	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000666;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000666:6;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22697693	22697807	.	-	2	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000666;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000666:6;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22697808	22699817	.	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000666;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000666:6;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22699818	22699970	.	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000666;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000666:7;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22699818	22699970	.	-	2	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000666;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000666:7;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22699971	22701885	.	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000666;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000666:7;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22701886	22702063	.	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000666;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000666:8;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22701886	22702063	.	-	0	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000666;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000666:8;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22702064	22705082	.	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000666;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000666:8;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22705083	22705186	.	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000666;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000666:9;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22705083	22705186	.	-	2	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000666;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000666:9;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22705187	22705650	.	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000666;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000666:9;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22705651	22705763	.	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000666;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000666:10;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22705651	22705759	.	-	0	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000666;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000666:10;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	22705757	22705759	.	-	0	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000666;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=start_codon:HG003_chrY_T0000666;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22705764	22707624	.	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000666;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000666:10;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22707625	22707737	.	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000666;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000666:11;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22693339	22705173	100	-	.	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000667;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_G0000240;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=HG003_chrY_T0000667;Name=RBMY1E
HG003_chrY	CAT	exon	22693339	22693911	.	-	.	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000667;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000667;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000667:0;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22693613	22693911	.	-	2	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000667;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000667;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000667:0;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	22693613	22693615	.	-	0	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000667;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000667;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=stop_codon:HG003_chrY_T0000667;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22693912	22694322	.	-	.	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000667;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000667;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000667:0;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22694323	22694411	.	-	.	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000667;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000667;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000667:1;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22694323	22694411	.	-	1	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000667;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000667;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000667:1;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22694412	22694497	.	-	.	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000667;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000667;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000667:1;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22694498	22694608	.	-	.	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000667;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000667;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000667:2;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22694498	22694608	.	-	1	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000667;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000667;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000667:2;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22694609	22695529	.	-	.	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000667;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000667;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000667:2;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22695530	22695640	.	-	.	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000667;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000667;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000667:3;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22695530	22695640	.	-	1	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000667;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000667;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000667:3;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22695641	22696074	.	-	.	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000667;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000667;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000667:3;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22696075	22696185	.	-	.	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000667;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000667;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000667:4;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22696075	22696185	.	-	1	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000667;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000667;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000667:4;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22696186	22696626	.	-	.	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000667;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000667;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000667:4;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22696627	22696737	.	-	.	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000667;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000667;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000667:5;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22696627	22696737	.	-	1	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000667;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000667;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000667:5;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22696738	22697692	.	-	.	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000667;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000667;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000667:5;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22697693	22697807	.	-	.	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000667;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000667;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000667:6;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22697693	22697807	.	-	2	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000667;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000667;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000667:6;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22697808	22699817	.	-	.	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000667;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000667;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000667:6;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22699818	22699970	.	-	.	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000667;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000667;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000667:7;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22699818	22699941	.	-	0	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000667;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000667;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000667:7;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	22699939	22699941	.	-	0	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000667;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000667;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=start_codon:HG003_chrY_T0000667;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22699971	22705082	.	-	.	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000667;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000667;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000667:7;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22705083	22705173	.	-	.	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000667;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000667;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000667:8;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22693339	22707737	100	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000668;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_G0000240;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=HG003_chrY_T0000668;Name=RBMY1E
HG003_chrY	CAT	exon	22693339	22693911	.	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000668;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000668;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000668:0;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22693613	22693911	.	-	2	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000668;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000668;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000668:0;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	22693613	22693615	.	-	0	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000668;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000668;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=stop_codon:HG003_chrY_T0000668;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22693912	22694322	.	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000668;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000668;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000668:0;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22694323	22694411	.	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000668;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000668;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000668:1;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22694323	22694411	.	-	1	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000668;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000668;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000668:1;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22694412	22694497	.	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000668;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000668;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000668:1;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22694498	22694608	.	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000668;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000668;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000668:2;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22694498	22694608	.	-	1	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000668;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000668;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000668:2;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22694609	22695529	.	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000668;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000668;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000668:2;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22695530	22695640	.	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000668;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000668;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000668:3;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22695530	22695640	.	-	1	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000668;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000668;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000668:3;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22695641	22696074	.	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000668;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000668;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000668:3;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22696075	22696185	.	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000668;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000668;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000668:4;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22696075	22696185	.	-	1	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000668;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000668;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000668:4;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22696186	22696626	.	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000668;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000668;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000668:4;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22696627	22696737	.	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000668;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000668;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000668:5;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22696627	22696737	.	-	1	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000668;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000668;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000668:5;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22696738	22697692	.	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000668;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000668;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000668:5;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22697693	22697807	.	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000668;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000668;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000668:6;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22697693	22697807	.	-	2	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000668;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000668;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000668:6;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22697808	22699817	.	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000668;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000668;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000668:6;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22699818	22699970	.	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000668;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000668;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000668:7;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22699818	22699970	.	-	2	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000668;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000668;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000668:7;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22699971	22701885	.	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000668;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000668;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000668:7;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22701886	22702063	.	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000668;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000668;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000668:8;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22701886	22702063	.	-	0	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000668;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000668;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000668:8;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22702064	22705082	.	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000668;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000668;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000668:8;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22705083	22705186	.	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000668;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000668;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000668:9;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22705083	22705186	.	-	2	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000668;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000668;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000668:9;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22705187	22705650	.	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000668;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000668;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000668:9;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22705651	22705763	.	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000668;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000668;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000668:10;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22705651	22705759	.	-	0	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000668;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000668;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000668:10;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	22705757	22705759	.	-	0	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000668;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000668;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=start_codon:HG003_chrY_T0000668;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22705764	22707624	.	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000668;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000668;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000668:10;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22707625	22707737	.	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000668;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000668;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000668:11;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22693339	22707737	100	-	.	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000669;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_G0000240;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=HG003_chrY_T0000669;Name=RBMY1E
HG003_chrY	CAT	exon	22693339	22693911	.	-	.	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000669;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000669;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000669:0;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22693613	22693911	.	-	2	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000669;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000669;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000669:0;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	22693613	22693615	.	-	0	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000669;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000669;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=stop_codon:HG003_chrY_T0000669;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22693912	22694322	.	-	.	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000669;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000669;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000669:0;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22694323	22694411	.	-	.	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000669;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000669;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000669:1;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22694323	22694411	.	-	1	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000669;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000669;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000669:1;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22694412	22695529	.	-	.	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000669;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000669;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000669:1;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22695530	22695640	.	-	.	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000669;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000669;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000669:2;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22695530	22695640	.	-	1	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000669;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000669;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000669:2;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22695641	22696074	.	-	.	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000669;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000669;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000669:2;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22696075	22696185	.	-	.	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000669;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000669;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000669:3;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22696075	22696185	.	-	1	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000669;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000669;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000669:3;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22696186	22696626	.	-	.	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000669;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000669;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000669:3;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22696627	22696737	.	-	.	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000669;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000669;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000669:4;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22696627	22696737	.	-	1	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000669;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000669;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000669:4;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22696738	22697692	.	-	.	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000669;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000669;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000669:4;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22697693	22697807	.	-	.	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000669;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000669;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000669:5;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22697693	22697807	.	-	2	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000669;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000669;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000669:5;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22697808	22699817	.	-	.	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000669;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000669;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000669:5;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22699818	22699970	.	-	.	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000669;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000669;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000669:6;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22699818	22699970	.	-	2	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000669;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000669;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000669:6;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22699971	22701885	.	-	.	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000669;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000669;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000669:6;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22701886	22702063	.	-	.	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000669;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000669;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000669:7;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22701886	22702063	.	-	0	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000669;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000669;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000669:7;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22702064	22705082	.	-	.	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000669;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000669;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000669:7;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22705083	22705186	.	-	.	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000669;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000669;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000669:8;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22705083	22705186	.	-	2	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000669;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000669;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000669:8;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22705187	22705650	.	-	.	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000669;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000669;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000669:8;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22705651	22705763	.	-	.	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000669;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000669;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000669:9;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22705651	22705759	.	-	0	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000669;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000669;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000669:9;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	22705757	22705759	.	-	0	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000669;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000669;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=start_codon:HG003_chrY_T0000669;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22705764	22707624	.	-	.	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000669;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000669;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000669:9;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22707625	22707737	.	-	.	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000669;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000669;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000669:10;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22693339	22707737	100	-	.	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000670;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_G0000240;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=HG003_chrY_T0000670;Name=RBMY1E
HG003_chrY	CAT	exon	22693339	22693911	.	-	.	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000670;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000670;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000670:0;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22693613	22693911	.	-	2	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000670;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000670;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000670:0;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	22693613	22693615	.	-	0	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000670;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000670;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=stop_codon:HG003_chrY_T0000670;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22693912	22694322	.	-	.	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000670;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000670;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000670:0;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22694323	22694411	.	-	.	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000670;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000670;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000670:1;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22694323	22694411	.	-	1	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000670;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000670;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000670:1;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22694412	22696626	.	-	.	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000670;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000670;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000670:1;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22696627	22696737	.	-	.	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000670;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000670;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000670:2;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22696627	22696737	.	-	1	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000670;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000670;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000670:2;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22696738	22697692	.	-	.	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000670;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000670;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000670:2;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22697693	22697807	.	-	.	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000670;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000670;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000670:3;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22697693	22697807	.	-	2	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000670;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000670;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000670:3;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22697808	22699817	.	-	.	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000670;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000670;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000670:3;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22699818	22699970	.	-	.	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000670;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000670;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000670:4;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22699818	22699970	.	-	2	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000670;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000670;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000670:4;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22699971	22701885	.	-	.	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000670;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000670;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000670:4;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22701886	22702063	.	-	.	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000670;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000670;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000670:5;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22701886	22702063	.	-	0	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000670;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000670;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000670:5;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22702064	22705082	.	-	.	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000670;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000670;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000670:5;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22705083	22705186	.	-	.	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000670;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000670;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000670:6;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22705083	22705186	.	-	2	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000670;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000670;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000670:6;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22705187	22705650	.	-	.	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000670;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000670;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000670:6;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22705651	22705763	.	-	.	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000670;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000670;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000670:7;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22705651	22705759	.	-	0	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000670;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000670;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0000670:7;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	22705757	22705759	.	-	0	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000670;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000670;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=start_codon:HG003_chrY_T0000670;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22705764	22707624	.	-	.	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000670;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000670;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:HG003_chrY_T0000670:7;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22707625	22707737	.	-	.	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000670;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000670;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:HG003_chrY_T0000670:8;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22818041	22820068	.	+	.	source_gene_common_name=LOC107987356;source_gene=hg002_chrY_paternal_481;alternative_source_transcripts=hg002_chrY_paternal_481.1;gene_id=HG003_chrY_G0000241;gene_biotype=lncRNA;gene_name=LOC107987356;gene_sources=liftoff;ID=HG003_chrY_G0000241;Name=LOC107987356
HG003_chrY	CAT	transcript	22818041	22820068	1000	+	.	source_transcript=hg002_chrY_paternal_481.1;source_transcript_name=hg002_chrY_paternal_481.1;source_gene=hg002_chrY_paternal_481;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_481;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_481.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_481.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987356;alternative_source_transcripts=hg002_chrY_paternal_481.1;transcript_id=HG003_chrY_T0000671;gene_id=HG003_chrY_G0000241;Parent=HG003_chrY_G0000241;transcript_name=hg002_chrY_paternal_481.1;gene_name=LOC107987356;ID=HG003_chrY_T0000671;Name=LOC107987356
HG003_chrY	CAT	exon	22818041	22818153	.	+	.	source_transcript=hg002_chrY_paternal_481.1;source_transcript_name=hg002_chrY_paternal_481.1;source_gene=hg002_chrY_paternal_481;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_481;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_481.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_481.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987356;alternative_source_transcripts=hg002_chrY_paternal_481.1;transcript_id=HG003_chrY_T0000671;gene_id=HG003_chrY_G0000241;Parent=HG003_chrY_T0000671;transcript_name=hg002_chrY_paternal_481.1;gene_name=LOC107987356;ID=exon:HG003_chrY_T0000671:0;Name=LOC107987356;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22818154	22818270	.	+	.	source_transcript=hg002_chrY_paternal_481.1;source_transcript_name=hg002_chrY_paternal_481.1;source_gene=hg002_chrY_paternal_481;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_481;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_481.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_481.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987356;alternative_source_transcripts=hg002_chrY_paternal_481.1;transcript_id=HG003_chrY_T0000671;gene_id=HG003_chrY_G0000241;Parent=HG003_chrY_T0000671;transcript_name=hg002_chrY_paternal_481.1;gene_name=LOC107987356;ID=intron:HG003_chrY_T0000671:0;Name=LOC107987356;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22818271	22818331	.	+	.	source_transcript=hg002_chrY_paternal_481.1;source_transcript_name=hg002_chrY_paternal_481.1;source_gene=hg002_chrY_paternal_481;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_481;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_481.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_481.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987356;alternative_source_transcripts=hg002_chrY_paternal_481.1;transcript_id=HG003_chrY_T0000671;gene_id=HG003_chrY_G0000241;Parent=HG003_chrY_T0000671;transcript_name=hg002_chrY_paternal_481.1;gene_name=LOC107987356;ID=exon:HG003_chrY_T0000671:1;Name=LOC107987356;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22818332	22819866	.	+	.	source_transcript=hg002_chrY_paternal_481.1;source_transcript_name=hg002_chrY_paternal_481.1;source_gene=hg002_chrY_paternal_481;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_481;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_481.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_481.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987356;alternative_source_transcripts=hg002_chrY_paternal_481.1;transcript_id=HG003_chrY_T0000671;gene_id=HG003_chrY_G0000241;Parent=HG003_chrY_T0000671;transcript_name=hg002_chrY_paternal_481.1;gene_name=LOC107987356;ID=intron:HG003_chrY_T0000671:1;Name=LOC107987356;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22819867	22820068	.	+	.	source_transcript=hg002_chrY_paternal_481.1;source_transcript_name=hg002_chrY_paternal_481.1;source_gene=hg002_chrY_paternal_481;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_481;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_481.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_481.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987356;alternative_source_transcripts=hg002_chrY_paternal_481.1;transcript_id=HG003_chrY_T0000671;gene_id=HG003_chrY_G0000241;Parent=HG003_chrY_T0000671;transcript_name=hg002_chrY_paternal_481.1;gene_name=LOC107987356;ID=exon:HG003_chrY_T0000671:2;Name=LOC107987356;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22861477	22885721	.	-	.	source_gene_common_name=PRY;source_gene=hg002_chrY_paternal_486;alternative_source_transcripts=hg002_chrY_paternal_486.1;gene_id=HG003_chrY_G0000242;gene_biotype=protein_coding;gene_name=PRY;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000242;Name=PRY
HG003_chrY	CAT	transcript	22861477	22885721	100	-	.	source_transcript=hg002_chrY_paternal_486.1;source_transcript_name=hg002_chrY_paternal_486.1;source_gene=hg002_chrY_paternal_486;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_486;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_486.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_486.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY;alternative_source_transcripts=hg002_chrY_paternal_486.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000672;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_G0000242;transcript_name=hg002_chrY_paternal_486.1;gene_name=PRY;ID=HG003_chrY_T0000672;Name=PRY
HG003_chrY	CAT	exon	22861477	22862302	.	-	.	source_transcript=hg002_chrY_paternal_486.1;source_transcript_name=hg002_chrY_paternal_486.1;source_gene=hg002_chrY_paternal_486;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_486;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_486.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_486.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY;alternative_source_transcripts=hg002_chrY_paternal_486.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000672;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000672;transcript_name=hg002_chrY_paternal_486.1;gene_name=PRY;ID=exon:HG003_chrY_T0000672:0;Name=PRY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22862044	22862302	.	-	1	source_transcript=hg002_chrY_paternal_486.1;source_transcript_name=hg002_chrY_paternal_486.1;source_gene=hg002_chrY_paternal_486;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_486;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_486.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_486.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY;alternative_source_transcripts=hg002_chrY_paternal_486.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000672;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000672;transcript_name=hg002_chrY_paternal_486.1;gene_name=PRY;ID=CDS:HG003_chrY_T0000672:0;Name=PRY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	22862044	22862046	.	-	0	source_transcript=hg002_chrY_paternal_486.1;source_transcript_name=hg002_chrY_paternal_486.1;source_gene=hg002_chrY_paternal_486;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_486;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_486.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_486.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY;alternative_source_transcripts=hg002_chrY_paternal_486.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000672;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000672;transcript_name=hg002_chrY_paternal_486.1;gene_name=PRY;ID=stop_codon:HG003_chrY_T0000672;Name=PRY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22862303	22871792	.	-	.	source_transcript=hg002_chrY_paternal_486.1;source_transcript_name=hg002_chrY_paternal_486.1;source_gene=hg002_chrY_paternal_486;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_486;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_486.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_486.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY;alternative_source_transcripts=hg002_chrY_paternal_486.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000672;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000672;transcript_name=hg002_chrY_paternal_486.1;gene_name=PRY;ID=intron:HG003_chrY_T0000672:0;Name=PRY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22871793	22871908	.	-	.	source_transcript=hg002_chrY_paternal_486.1;source_transcript_name=hg002_chrY_paternal_486.1;source_gene=hg002_chrY_paternal_486;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_486;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_486.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_486.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY;alternative_source_transcripts=hg002_chrY_paternal_486.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000672;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000672;transcript_name=hg002_chrY_paternal_486.1;gene_name=PRY;ID=exon:HG003_chrY_T0000672:1;Name=PRY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22871793	22871908	.	-	0	source_transcript=hg002_chrY_paternal_486.1;source_transcript_name=hg002_chrY_paternal_486.1;source_gene=hg002_chrY_paternal_486;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_486;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_486.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_486.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY;alternative_source_transcripts=hg002_chrY_paternal_486.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000672;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000672;transcript_name=hg002_chrY_paternal_486.1;gene_name=PRY;ID=CDS:HG003_chrY_T0000672:1;Name=PRY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22871909	22874483	.	-	.	source_transcript=hg002_chrY_paternal_486.1;source_transcript_name=hg002_chrY_paternal_486.1;source_gene=hg002_chrY_paternal_486;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_486;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_486.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_486.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY;alternative_source_transcripts=hg002_chrY_paternal_486.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000672;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000672;transcript_name=hg002_chrY_paternal_486.1;gene_name=PRY;ID=intron:HG003_chrY_T0000672:1;Name=PRY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22874484	22874604	.	-	.	source_transcript=hg002_chrY_paternal_486.1;source_transcript_name=hg002_chrY_paternal_486.1;source_gene=hg002_chrY_paternal_486;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_486;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_486.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_486.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY;alternative_source_transcripts=hg002_chrY_paternal_486.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000672;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000672;transcript_name=hg002_chrY_paternal_486.1;gene_name=PRY;ID=exon:HG003_chrY_T0000672:2;Name=PRY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22874484	22874552	.	-	0	source_transcript=hg002_chrY_paternal_486.1;source_transcript_name=hg002_chrY_paternal_486.1;source_gene=hg002_chrY_paternal_486;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_486;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_486.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_486.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY;alternative_source_transcripts=hg002_chrY_paternal_486.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000672;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000672;transcript_name=hg002_chrY_paternal_486.1;gene_name=PRY;ID=CDS:HG003_chrY_T0000672:2;Name=PRY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	22874550	22874552	.	-	0	source_transcript=hg002_chrY_paternal_486.1;source_transcript_name=hg002_chrY_paternal_486.1;source_gene=hg002_chrY_paternal_486;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_486;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_486.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_486.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY;alternative_source_transcripts=hg002_chrY_paternal_486.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000672;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000672;transcript_name=hg002_chrY_paternal_486.1;gene_name=PRY;ID=start_codon:HG003_chrY_T0000672;Name=PRY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22874605	22885445	.	-	.	source_transcript=hg002_chrY_paternal_486.1;source_transcript_name=hg002_chrY_paternal_486.1;source_gene=hg002_chrY_paternal_486;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_486;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_486.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_486.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY;alternative_source_transcripts=hg002_chrY_paternal_486.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000672;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000672;transcript_name=hg002_chrY_paternal_486.1;gene_name=PRY;ID=intron:HG003_chrY_T0000672:2;Name=PRY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22885446	22885532	.	-	.	source_transcript=hg002_chrY_paternal_486.1;source_transcript_name=hg002_chrY_paternal_486.1;source_gene=hg002_chrY_paternal_486;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_486;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_486.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_486.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY;alternative_source_transcripts=hg002_chrY_paternal_486.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000672;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000672;transcript_name=hg002_chrY_paternal_486.1;gene_name=PRY;ID=exon:HG003_chrY_T0000672:3;Name=PRY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22885533	22885633	.	-	.	source_transcript=hg002_chrY_paternal_486.1;source_transcript_name=hg002_chrY_paternal_486.1;source_gene=hg002_chrY_paternal_486;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_486;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_486.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_486.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY;alternative_source_transcripts=hg002_chrY_paternal_486.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000672;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000672;transcript_name=hg002_chrY_paternal_486.1;gene_name=PRY;ID=intron:HG003_chrY_T0000672:3;Name=PRY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22885634	22885721	.	-	.	source_transcript=hg002_chrY_paternal_486.1;source_transcript_name=hg002_chrY_paternal_486.1;source_gene=hg002_chrY_paternal_486;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_486;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_486.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_486.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY;alternative_source_transcripts=hg002_chrY_paternal_486.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000672;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000672;transcript_name=hg002_chrY_paternal_486.1;gene_name=PRY;ID=exon:HG003_chrY_T0000672:4;Name=PRY;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22891427	22937260	.	-	.	source_gene_common_name=LOC102725532;source_gene=hg002_chrY_paternal_487;alternative_source_transcripts=hg002_chrY_paternal_487.1;gene_id=HG003_chrY_G0000243;gene_biotype=lncRNA;gene_name=LOC102725532;gene_sources=liftoff;ID=HG003_chrY_G0000243;Name=LOC102725532
HG003_chrY	CAT	transcript	22891427	22937260	1000	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=HG003_chrY_T0000673;gene_id=HG003_chrY_G0000243;Parent=HG003_chrY_G0000243;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=HG003_chrY_T0000673;Name=LOC102725532
HG003_chrY	CAT	exon	22891427	22892104	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=HG003_chrY_T0000673;gene_id=HG003_chrY_G0000243;Parent=HG003_chrY_T0000673;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=exon:HG003_chrY_T0000673:0;Name=LOC102725532;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22892105	22892619	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=HG003_chrY_T0000673;gene_id=HG003_chrY_G0000243;Parent=HG003_chrY_T0000673;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=intron:HG003_chrY_T0000673:0;Name=LOC102725532;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22892620	22892737	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=HG003_chrY_T0000673;gene_id=HG003_chrY_G0000243;Parent=HG003_chrY_T0000673;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=exon:HG003_chrY_T0000673:1;Name=LOC102725532;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22892738	22893281	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=HG003_chrY_T0000673;gene_id=HG003_chrY_G0000243;Parent=HG003_chrY_T0000673;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=intron:HG003_chrY_T0000673:1;Name=LOC102725532;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22893282	22893478	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=HG003_chrY_T0000673;gene_id=HG003_chrY_G0000243;Parent=HG003_chrY_T0000673;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=exon:HG003_chrY_T0000673:2;Name=LOC102725532;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22893479	22893598	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=HG003_chrY_T0000673;gene_id=HG003_chrY_G0000243;Parent=HG003_chrY_T0000673;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=intron:HG003_chrY_T0000673:2;Name=LOC102725532;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22893599	22893684	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=HG003_chrY_T0000673;gene_id=HG003_chrY_G0000243;Parent=HG003_chrY_T0000673;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=exon:HG003_chrY_T0000673:3;Name=LOC102725532;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22893685	22895484	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=HG003_chrY_T0000673;gene_id=HG003_chrY_G0000243;Parent=HG003_chrY_T0000673;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=intron:HG003_chrY_T0000673:3;Name=LOC102725532;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22895485	22895820	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=HG003_chrY_T0000673;gene_id=HG003_chrY_G0000243;Parent=HG003_chrY_T0000673;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=exon:HG003_chrY_T0000673:4;Name=LOC102725532;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22895821	22897286	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=HG003_chrY_T0000673;gene_id=HG003_chrY_G0000243;Parent=HG003_chrY_T0000673;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=intron:HG003_chrY_T0000673:4;Name=LOC102725532;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22897287	22897376	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=HG003_chrY_T0000673;gene_id=HG003_chrY_G0000243;Parent=HG003_chrY_T0000673;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=exon:HG003_chrY_T0000673:5;Name=LOC102725532;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22897377	22911005	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=HG003_chrY_T0000673;gene_id=HG003_chrY_G0000243;Parent=HG003_chrY_T0000673;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=intron:HG003_chrY_T0000673:5;Name=LOC102725532;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22911006	22911359	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=HG003_chrY_T0000673;gene_id=HG003_chrY_G0000243;Parent=HG003_chrY_T0000673;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=exon:HG003_chrY_T0000673:6;Name=LOC102725532;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22911360	22911789	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=HG003_chrY_T0000673;gene_id=HG003_chrY_G0000243;Parent=HG003_chrY_T0000673;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=intron:HG003_chrY_T0000673:6;Name=LOC102725532;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22911790	22911908	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=HG003_chrY_T0000673;gene_id=HG003_chrY_G0000243;Parent=HG003_chrY_T0000673;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=exon:HG003_chrY_T0000673:7;Name=LOC102725532;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22911909	22919086	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=HG003_chrY_T0000673;gene_id=HG003_chrY_G0000243;Parent=HG003_chrY_T0000673;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=intron:HG003_chrY_T0000673:7;Name=LOC102725532;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22919087	22919172	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=HG003_chrY_T0000673;gene_id=HG003_chrY_G0000243;Parent=HG003_chrY_T0000673;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=exon:HG003_chrY_T0000673:8;Name=LOC102725532;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22919173	22919480	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=HG003_chrY_T0000673;gene_id=HG003_chrY_G0000243;Parent=HG003_chrY_T0000673;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=intron:HG003_chrY_T0000673:8;Name=LOC102725532;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22919481	22919703	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=HG003_chrY_T0000673;gene_id=HG003_chrY_G0000243;Parent=HG003_chrY_T0000673;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=exon:HG003_chrY_T0000673:9;Name=LOC102725532;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22919704	22929669	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=HG003_chrY_T0000673;gene_id=HG003_chrY_G0000243;Parent=HG003_chrY_T0000673;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=intron:HG003_chrY_T0000673:9;Name=LOC102725532;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22929670	22929810	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=HG003_chrY_T0000673;gene_id=HG003_chrY_G0000243;Parent=HG003_chrY_T0000673;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=exon:HG003_chrY_T0000673:10;Name=LOC102725532;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22929811	22936359	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=HG003_chrY_T0000673;gene_id=HG003_chrY_G0000243;Parent=HG003_chrY_T0000673;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=intron:HG003_chrY_T0000673:10;Name=LOC102725532;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22936360	22936669	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=HG003_chrY_T0000673;gene_id=HG003_chrY_G0000243;Parent=HG003_chrY_T0000673;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=exon:HG003_chrY_T0000673:11;Name=LOC102725532;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22936670	22937003	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=HG003_chrY_T0000673;gene_id=HG003_chrY_G0000243;Parent=HG003_chrY_T0000673;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=intron:HG003_chrY_T0000673:11;Name=LOC102725532;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22937004	22937260	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=HG003_chrY_T0000673;gene_id=HG003_chrY_G0000243;Parent=HG003_chrY_T0000673;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=exon:HG003_chrY_T0000673:12;Name=LOC102725532;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22934685	22936551	.	+	.	source_gene_common_name=TTTY6;source_gene=hg002_chrY_paternal_504;gene_id=HG003_chrY_G0000244;gene_biotype=lncRNA;gene_name=TTTY6;gene_sources=liftoff;ID=HG003_chrY_G0000244;Name=TTTY6
HG003_chrY	CAT	transcript	22934685	22936551	1000	+	.	source_transcript=hg002_chrY_paternal_504.1;source_transcript_name=hg002_chrY_paternal_504.1;source_gene=hg002_chrY_paternal_504;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_504;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_504.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_504.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY6;transcript_id=HG003_chrY_T0000674;gene_id=HG003_chrY_G0000244;Parent=HG003_chrY_G0000244;transcript_name=hg002_chrY_paternal_504.1;gene_name=TTTY6;ID=HG003_chrY_T0000674;Name=TTTY6
HG003_chrY	CAT	exon	22934685	22934799	.	+	.	source_transcript=hg002_chrY_paternal_504.1;source_transcript_name=hg002_chrY_paternal_504.1;source_gene=hg002_chrY_paternal_504;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_504;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_504.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_504.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY6;transcript_id=HG003_chrY_T0000674;gene_id=HG003_chrY_G0000244;Parent=HG003_chrY_T0000674;transcript_name=hg002_chrY_paternal_504.1;gene_name=TTTY6;ID=exon:HG003_chrY_T0000674:0;Name=TTTY6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22934800	22935017	.	+	.	source_transcript=hg002_chrY_paternal_504.1;source_transcript_name=hg002_chrY_paternal_504.1;source_gene=hg002_chrY_paternal_504;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_504;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_504.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_504.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY6;transcript_id=HG003_chrY_T0000674;gene_id=HG003_chrY_G0000244;Parent=HG003_chrY_T0000674;transcript_name=hg002_chrY_paternal_504.1;gene_name=TTTY6;ID=intron:HG003_chrY_T0000674:0;Name=TTTY6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22935018	22935155	.	+	.	source_transcript=hg002_chrY_paternal_504.1;source_transcript_name=hg002_chrY_paternal_504.1;source_gene=hg002_chrY_paternal_504;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_504;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_504.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_504.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY6;transcript_id=HG003_chrY_T0000674;gene_id=HG003_chrY_G0000244;Parent=HG003_chrY_T0000674;transcript_name=hg002_chrY_paternal_504.1;gene_name=TTTY6;ID=exon:HG003_chrY_T0000674:1;Name=TTTY6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22935156	22936312	.	+	.	source_transcript=hg002_chrY_paternal_504.1;source_transcript_name=hg002_chrY_paternal_504.1;source_gene=hg002_chrY_paternal_504;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_504;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_504.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_504.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY6;transcript_id=HG003_chrY_T0000674;gene_id=HG003_chrY_G0000244;Parent=HG003_chrY_T0000674;transcript_name=hg002_chrY_paternal_504.1;gene_name=TTTY6;ID=intron:HG003_chrY_T0000674:1;Name=TTTY6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22936313	22936551	.	+	.	source_transcript=hg002_chrY_paternal_504.1;source_transcript_name=hg002_chrY_paternal_504.1;source_gene=hg002_chrY_paternal_504;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_504;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_504.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_504.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY6;transcript_id=HG003_chrY_T0000674;gene_id=HG003_chrY_G0000244;Parent=HG003_chrY_T0000674;transcript_name=hg002_chrY_paternal_504.1;gene_name=TTTY6;ID=exon:HG003_chrY_T0000674:2;Name=TTTY6;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22951276	22972734	.	-	.	source_gene_common_name=RBMY1J;source_gene=hg002_chrY_paternal_489;gene_id=HG003_chrY_G0000245;gene_biotype=protein_coding;gene_name=RBMY1J;gene_sources=liftoff;ID=HG003_chrY_G0000245;Name=RBMY1J
HG003_chrY	CAT	transcript	22951276	22972734	100	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000675;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_G0000245;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=HG003_chrY_T0000675;Name=RBMY1J
HG003_chrY	CAT	exon	22951276	22952779	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000675;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000675;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000675:0;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22952769	22952779	.	-	2	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000675;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000675;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000675:0;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	22952769	22952771	.	-	0	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000675;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000675;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=stop_codon:HG003_chrY_T0000675;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22952780	22955372	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000675;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000675;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000675:0;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22955373	22955519	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000675;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000675;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000675:1;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22955373	22955519	.	-	2	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000675;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000675;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000675:1;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22955520	22959252	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000675;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000675;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000675:1;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22959253	22959341	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000675;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000675;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000675:2;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22959253	22959341	.	-	1	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000675;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000675;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000675:2;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22959342	22959427	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000675;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000675;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000675:2;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22959428	22959538	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000675;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000675;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000675:3;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22959428	22959538	.	-	1	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000675;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000675;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000675:3;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22959539	22960461	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000675;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000675;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000675:3;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22960462	22960572	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000675;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000675;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000675:4;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22960462	22960572	.	-	1	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000675;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000675;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000675:4;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22960573	22961006	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000675;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000675;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000675:4;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22961007	22961117	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000675;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000675;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000675:5;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22961007	22961117	.	-	1	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000675;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000675;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000675:5;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22961118	22961557	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000675;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000675;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000675:5;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22961558	22961668	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000675;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000675;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000675:6;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22961558	22961668	.	-	1	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000675;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000675;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000675:6;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22961669	22962623	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000675;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000675;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000675:6;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22962624	22962738	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000675;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000675;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000675:7;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22962624	22962738	.	-	2	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000675;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000675;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000675:7;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22962739	22964748	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000675;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000675;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000675:7;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22964749	22964901	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000675;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000675;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000675:8;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22964749	22964901	.	-	2	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000675;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000675;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000675:8;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22964902	22966816	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000675;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000675;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000675:8;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22966817	22966994	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000675;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000675;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000675:9;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22966817	22966994	.	-	0	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000675;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000675;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000675:9;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22966995	22970016	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000675;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000675;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000675:9;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22970017	22970120	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000675;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000675;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000675:10;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22970017	22970120	.	-	2	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000675;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000675;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000675:10;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22970121	22970586	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000675;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000675;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000675:10;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22970587	22970699	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000675;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000675;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000675:11;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22970587	22970695	.	-	0	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000675;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000675;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000675:11;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	22970693	22970695	.	-	0	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000675;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000675;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=start_codon:HG003_chrY_T0000675;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22970700	22972560	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000675;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000675;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000675:11;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22972561	22972734	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000675;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000675;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000675:12;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22958265	22972734	100	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000676;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_G0000245;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=HG003_chrY_T0000676;Name=RBMY1J
HG003_chrY	CAT	exon	22958265	22958841	.	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000676;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000676;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000676:0;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22958543	22958841	.	-	2	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000676;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000676;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000676:0;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	22958543	22958545	.	-	0	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000676;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000676;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=stop_codon:HG003_chrY_T0000676;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22958842	22959252	.	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000676;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000676;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000676:0;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22959253	22959341	.	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000676;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000676;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000676:1;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22959253	22959341	.	-	1	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000676;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000676;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000676:1;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22959342	22959427	.	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000676;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000676;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000676:1;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22959428	22959538	.	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000676;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000676;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000676:2;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22959428	22959538	.	-	1	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000676;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000676;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000676:2;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22959539	22960461	.	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000676;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000676;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000676:2;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22960462	22960572	.	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000676;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000676;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000676:3;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22960462	22960572	.	-	1	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000676;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000676;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000676:3;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22960573	22961006	.	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000676;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000676;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000676:3;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22961007	22961117	.	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000676;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000676;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000676:4;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22961007	22961117	.	-	1	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000676;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000676;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000676:4;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22961118	22961557	.	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000676;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000676;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000676:4;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22961558	22961668	.	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000676;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000676;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000676:5;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22961558	22961668	.	-	1	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000676;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000676;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000676:5;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22961669	22962623	.	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000676;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000676;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000676:5;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22962624	22962738	.	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000676;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000676;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000676:6;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22962624	22962738	.	-	2	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000676;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000676;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000676:6;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22962739	22964748	.	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000676;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000676;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000676:6;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22964749	22964901	.	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000676;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000676;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000676:7;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22964749	22964901	.	-	2	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000676;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000676;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000676:7;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22964902	22966816	.	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000676;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000676;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000676:7;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22966817	22966994	.	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000676;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000676;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000676:8;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22966817	22966994	.	-	0	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000676;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000676;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000676:8;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22966995	22970016	.	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000676;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000676;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000676:8;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22970017	22970120	.	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000676;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000676;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000676:9;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22970017	22970120	.	-	2	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000676;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000676;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000676:9;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22970121	22970586	.	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000676;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000676;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000676:9;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22970587	22970699	.	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000676;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000676;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000676:10;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22970587	22970695	.	-	0	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000676;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000676;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000676:10;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	22970693	22970695	.	-	0	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000676;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000676;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=start_codon:HG003_chrY_T0000676;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22970700	22972560	.	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000676;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000676;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000676:10;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22972561	22972734	.	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000676;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000676;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000676:11;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22958265	22972734	100	-	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000677;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_G0000245;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=HG003_chrY_T0000677;Name=RBMY1J
HG003_chrY	CAT	exon	22958265	22958841	.	-	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000677;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000677;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000677:0;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22958543	22958841	.	-	2	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000677;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000677;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000677:0;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	22958543	22958545	.	-	0	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000677;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000677;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=stop_codon:HG003_chrY_T0000677;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22958842	22959252	.	-	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000677;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000677;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000677:0;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22959253	22959341	.	-	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000677;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000677;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000677:1;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22959253	22959341	.	-	1	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000677;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000677;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000677:1;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22959342	22960461	.	-	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000677;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000677;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000677:1;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22960462	22960572	.	-	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000677;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000677;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000677:2;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22960462	22960572	.	-	1	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000677;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000677;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000677:2;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22960573	22961006	.	-	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000677;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000677;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000677:2;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22961007	22961117	.	-	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000677;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000677;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000677:3;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22961007	22961117	.	-	1	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000677;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000677;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000677:3;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22961118	22961557	.	-	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000677;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000677;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000677:3;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22961558	22961668	.	-	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000677;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000677;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000677:4;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22961558	22961668	.	-	1	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000677;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000677;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000677:4;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22961669	22962623	.	-	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000677;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000677;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000677:4;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22962624	22962738	.	-	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000677;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000677;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000677:5;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22962624	22962738	.	-	2	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000677;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000677;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000677:5;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22962739	22964748	.	-	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000677;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000677;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000677:5;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22964749	22964901	.	-	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000677;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000677;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000677:6;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22964749	22964901	.	-	2	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000677;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000677;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000677:6;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22964902	22966816	.	-	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000677;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000677;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000677:6;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22966817	22966994	.	-	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000677;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000677;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000677:7;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22966817	22966994	.	-	0	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000677;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000677;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000677:7;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22966995	22970016	.	-	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000677;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000677;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000677:7;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22970017	22970120	.	-	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000677;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000677;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000677:8;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22970017	22970120	.	-	2	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000677;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000677;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000677:8;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22970121	22970586	.	-	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000677;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000677;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000677:8;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22970587	22970699	.	-	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000677;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000677;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000677:9;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22970587	22970695	.	-	0	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000677;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000677;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000677:9;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	22970693	22970695	.	-	0	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000677;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000677;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=start_codon:HG003_chrY_T0000677;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22970700	22972560	.	-	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000677;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000677;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000677:9;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22972561	22972734	.	-	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000677;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000677;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000677:10;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22958265	22970108	100	-	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000678;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_G0000245;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=HG003_chrY_T0000678;Name=RBMY1J
HG003_chrY	CAT	exon	22958265	22958841	.	-	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000678;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000678;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000678:0;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22958543	22958841	.	-	2	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000678;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000678;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000678:0;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	22958543	22958545	.	-	0	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000678;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000678;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=stop_codon:HG003_chrY_T0000678;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22958842	22959252	.	-	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000678;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000678;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000678:0;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22959253	22959341	.	-	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000678;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000678;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000678:1;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22959253	22959341	.	-	1	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000678;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000678;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000678:1;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22959342	22959427	.	-	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000678;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000678;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000678:1;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22959428	22959538	.	-	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000678;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000678;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000678:2;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22959428	22959538	.	-	1	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000678;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000678;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000678:2;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22959539	22960461	.	-	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000678;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000678;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000678:2;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22960462	22960572	.	-	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000678;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000678;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000678:3;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22960462	22960572	.	-	1	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000678;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000678;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000678:3;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22960573	22961006	.	-	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000678;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000678;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000678:3;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22961007	22961117	.	-	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000678;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000678;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000678:4;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22961007	22961117	.	-	1	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000678;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000678;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000678:4;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22961118	22961557	.	-	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000678;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000678;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000678:4;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22961558	22961668	.	-	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000678;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000678;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000678:5;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22961558	22961668	.	-	1	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000678;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000678;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000678:5;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22961669	22962623	.	-	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000678;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000678;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000678:5;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22962624	22962738	.	-	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000678;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000678;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000678:6;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22962624	22962738	.	-	2	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000678;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000678;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000678:6;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22962739	22964748	.	-	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000678;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000678;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000678:6;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22964749	22964901	.	-	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000678;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000678;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000678:7;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22964749	22964872	.	-	0	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000678;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000678;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000678:7;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	22964870	22964872	.	-	0	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000678;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000678;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=start_codon:HG003_chrY_T0000678;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22964902	22970016	.	-	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000678;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000678;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000678:7;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22970017	22970108	.	-	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0000678;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000678;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000678:8;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22982145	22988094	.	+	.	source_gene_common_name=LOC101929148;source_gene=hg002_chrY_paternal_503;gene_id=HG003_chrY_G0000246;gene_biotype=lncRNA;gene_name=LOC101929148;gene_sources=transMap;ID=HG003_chrY_G0000246;Name=LOC101929148
HG003_chrY	CAT	transcript	22982145	22988094	1000	+	.	source_transcript=hg002_chrY_paternal_503.1;source_transcript_name=hg002_chrY_paternal_503.1;source_gene=hg002_chrY_paternal_503;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_503;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_503.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_503.1;transcript_score=251.208;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101929148;transcript_id=HG003_chrY_T0000679;gene_id=HG003_chrY_G0000246;Parent=HG003_chrY_G0000246;transcript_name=hg002_chrY_paternal_503.1;gene_name=LOC101929148;ID=HG003_chrY_T0000679;Name=LOC101929148
HG003_chrY	CAT	exon	22982145	22982234	.	+	.	source_transcript=hg002_chrY_paternal_503.1;source_transcript_name=hg002_chrY_paternal_503.1;source_gene=hg002_chrY_paternal_503;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_503;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_503.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_503.1;transcript_score=251.208;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101929148;transcript_id=HG003_chrY_T0000679;gene_id=HG003_chrY_G0000246;Parent=HG003_chrY_T0000679;transcript_name=hg002_chrY_paternal_503.1;gene_name=LOC101929148;ID=exon:HG003_chrY_T0000679:0;Name=LOC101929148;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22982235	22983700	.	+	.	source_transcript=hg002_chrY_paternal_503.1;source_transcript_name=hg002_chrY_paternal_503.1;source_gene=hg002_chrY_paternal_503;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_503;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_503.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_503.1;transcript_score=251.208;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101929148;transcript_id=HG003_chrY_T0000679;gene_id=HG003_chrY_G0000246;Parent=HG003_chrY_T0000679;transcript_name=hg002_chrY_paternal_503.1;gene_name=LOC101929148;ID=intron:HG003_chrY_T0000679:0;Name=LOC101929148;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22983701	22984036	.	+	.	source_transcript=hg002_chrY_paternal_503.1;source_transcript_name=hg002_chrY_paternal_503.1;source_gene=hg002_chrY_paternal_503;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_503;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_503.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_503.1;transcript_score=251.208;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101929148;transcript_id=HG003_chrY_T0000679;gene_id=HG003_chrY_G0000246;Parent=HG003_chrY_T0000679;transcript_name=hg002_chrY_paternal_503.1;gene_name=LOC101929148;ID=exon:HG003_chrY_T0000679:1;Name=LOC101929148;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22984037	22985836	.	+	.	source_transcript=hg002_chrY_paternal_503.1;source_transcript_name=hg002_chrY_paternal_503.1;source_gene=hg002_chrY_paternal_503;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_503;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_503.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_503.1;transcript_score=251.208;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101929148;transcript_id=HG003_chrY_T0000679;gene_id=HG003_chrY_G0000246;Parent=HG003_chrY_T0000679;transcript_name=hg002_chrY_paternal_503.1;gene_name=LOC101929148;ID=intron:HG003_chrY_T0000679:1;Name=LOC101929148;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22985837	22985922	.	+	.	source_transcript=hg002_chrY_paternal_503.1;source_transcript_name=hg002_chrY_paternal_503.1;source_gene=hg002_chrY_paternal_503;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_503;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_503.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_503.1;transcript_score=251.208;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101929148;transcript_id=HG003_chrY_T0000679;gene_id=HG003_chrY_G0000246;Parent=HG003_chrY_T0000679;transcript_name=hg002_chrY_paternal_503.1;gene_name=LOC101929148;ID=exon:HG003_chrY_T0000679:2;Name=LOC101929148;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22985923	22986042	.	+	.	source_transcript=hg002_chrY_paternal_503.1;source_transcript_name=hg002_chrY_paternal_503.1;source_gene=hg002_chrY_paternal_503;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_503;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_503.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_503.1;transcript_score=251.208;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101929148;transcript_id=HG003_chrY_T0000679;gene_id=HG003_chrY_G0000246;Parent=HG003_chrY_T0000679;transcript_name=hg002_chrY_paternal_503.1;gene_name=LOC101929148;ID=intron:HG003_chrY_T0000679:2;Name=LOC101929148;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22986043	22986239	.	+	.	source_transcript=hg002_chrY_paternal_503.1;source_transcript_name=hg002_chrY_paternal_503.1;source_gene=hg002_chrY_paternal_503;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_503;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_503.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_503.1;transcript_score=251.208;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101929148;transcript_id=HG003_chrY_T0000679;gene_id=HG003_chrY_G0000246;Parent=HG003_chrY_T0000679;transcript_name=hg002_chrY_paternal_503.1;gene_name=LOC101929148;ID=exon:HG003_chrY_T0000679:3;Name=LOC101929148;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22986240	22986783	.	+	.	source_transcript=hg002_chrY_paternal_503.1;source_transcript_name=hg002_chrY_paternal_503.1;source_gene=hg002_chrY_paternal_503;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_503;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_503.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_503.1;transcript_score=251.208;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101929148;transcript_id=HG003_chrY_T0000679;gene_id=HG003_chrY_G0000246;Parent=HG003_chrY_T0000679;transcript_name=hg002_chrY_paternal_503.1;gene_name=LOC101929148;ID=intron:HG003_chrY_T0000679:3;Name=LOC101929148;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22986784	22986901	.	+	.	source_transcript=hg002_chrY_paternal_503.1;source_transcript_name=hg002_chrY_paternal_503.1;source_gene=hg002_chrY_paternal_503;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_503;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_503.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_503.1;transcript_score=251.208;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101929148;transcript_id=HG003_chrY_T0000679;gene_id=HG003_chrY_G0000246;Parent=HG003_chrY_T0000679;transcript_name=hg002_chrY_paternal_503.1;gene_name=LOC101929148;ID=exon:HG003_chrY_T0000679:4;Name=LOC101929148;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22986902	22987416	.	+	.	source_transcript=hg002_chrY_paternal_503.1;source_transcript_name=hg002_chrY_paternal_503.1;source_gene=hg002_chrY_paternal_503;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_503;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_503.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_503.1;transcript_score=251.208;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101929148;transcript_id=HG003_chrY_T0000679;gene_id=HG003_chrY_G0000246;Parent=HG003_chrY_T0000679;transcript_name=hg002_chrY_paternal_503.1;gene_name=LOC101929148;ID=intron:HG003_chrY_T0000679:4;Name=LOC101929148;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22987417	22988094	.	+	.	source_transcript=hg002_chrY_paternal_503.1;source_transcript_name=hg002_chrY_paternal_503.1;source_gene=hg002_chrY_paternal_503;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_503;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_503.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_503.1;transcript_score=251.208;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101929148;transcript_id=HG003_chrY_T0000679;gene_id=HG003_chrY_G0000246;Parent=HG003_chrY_T0000679;transcript_name=hg002_chrY_paternal_503.1;gene_name=LOC101929148;ID=exon:HG003_chrY_T0000679:5;Name=LOC101929148;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22993780	23018032	.	+	.	source_gene_common_name=PRY2;source_gene=hg002_chrY_paternal_505;alternative_source_transcripts=hg002_chrY_paternal_505.1;gene_id=HG003_chrY_G0000247;gene_biotype=protein_coding;gene_name=PRY2;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000247;Name=PRY2
HG003_chrY	CAT	transcript	22993780	23018032	100	+	.	source_transcript=hg002_chrY_paternal_505.1;source_transcript_name=hg002_chrY_paternal_505.1;source_gene=hg002_chrY_paternal_505;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_505;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_505.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_505.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY2;alternative_source_transcripts=hg002_chrY_paternal_505.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000680;gene_id=HG003_chrY_G0000247;Parent=HG003_chrY_G0000247;transcript_name=hg002_chrY_paternal_505.1;gene_name=PRY2;ID=HG003_chrY_T0000680;Name=PRY2
HG003_chrY	CAT	exon	22993780	22993867	.	+	.	source_transcript=hg002_chrY_paternal_505.1;source_transcript_name=hg002_chrY_paternal_505.1;source_gene=hg002_chrY_paternal_505;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_505;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_505.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_505.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY2;alternative_source_transcripts=hg002_chrY_paternal_505.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000680;gene_id=HG003_chrY_G0000247;Parent=HG003_chrY_T0000680;transcript_name=hg002_chrY_paternal_505.1;gene_name=PRY2;ID=exon:HG003_chrY_T0000680:0;Name=PRY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22993868	22993968	.	+	.	source_transcript=hg002_chrY_paternal_505.1;source_transcript_name=hg002_chrY_paternal_505.1;source_gene=hg002_chrY_paternal_505;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_505;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_505.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_505.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY2;alternative_source_transcripts=hg002_chrY_paternal_505.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000680;gene_id=HG003_chrY_G0000247;Parent=HG003_chrY_T0000680;transcript_name=hg002_chrY_paternal_505.1;gene_name=PRY2;ID=intron:HG003_chrY_T0000680:0;Name=PRY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22993969	22994055	.	+	.	source_transcript=hg002_chrY_paternal_505.1;source_transcript_name=hg002_chrY_paternal_505.1;source_gene=hg002_chrY_paternal_505;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_505;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_505.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_505.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY2;alternative_source_transcripts=hg002_chrY_paternal_505.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000680;gene_id=HG003_chrY_G0000247;Parent=HG003_chrY_T0000680;transcript_name=hg002_chrY_paternal_505.1;gene_name=PRY2;ID=exon:HG003_chrY_T0000680:1;Name=PRY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22994056	23004896	.	+	.	source_transcript=hg002_chrY_paternal_505.1;source_transcript_name=hg002_chrY_paternal_505.1;source_gene=hg002_chrY_paternal_505;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_505;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_505.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_505.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY2;alternative_source_transcripts=hg002_chrY_paternal_505.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000680;gene_id=HG003_chrY_G0000247;Parent=HG003_chrY_T0000680;transcript_name=hg002_chrY_paternal_505.1;gene_name=PRY2;ID=intron:HG003_chrY_T0000680:1;Name=PRY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23004897	23005017	.	+	.	source_transcript=hg002_chrY_paternal_505.1;source_transcript_name=hg002_chrY_paternal_505.1;source_gene=hg002_chrY_paternal_505;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_505;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_505.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_505.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY2;alternative_source_transcripts=hg002_chrY_paternal_505.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000680;gene_id=HG003_chrY_G0000247;Parent=HG003_chrY_T0000680;transcript_name=hg002_chrY_paternal_505.1;gene_name=PRY2;ID=exon:HG003_chrY_T0000680:2;Name=PRY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23004949	23005017	.	+	0	source_transcript=hg002_chrY_paternal_505.1;source_transcript_name=hg002_chrY_paternal_505.1;source_gene=hg002_chrY_paternal_505;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_505;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_505.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_505.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY2;alternative_source_transcripts=hg002_chrY_paternal_505.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000680;gene_id=HG003_chrY_G0000247;Parent=HG003_chrY_T0000680;transcript_name=hg002_chrY_paternal_505.1;gene_name=PRY2;ID=CDS:HG003_chrY_T0000680:0;Name=PRY2;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	23004949	23004951	.	+	0	source_transcript=hg002_chrY_paternal_505.1;source_transcript_name=hg002_chrY_paternal_505.1;source_gene=hg002_chrY_paternal_505;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_505;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_505.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_505.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY2;alternative_source_transcripts=hg002_chrY_paternal_505.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000680;gene_id=HG003_chrY_G0000247;Parent=HG003_chrY_T0000680;transcript_name=hg002_chrY_paternal_505.1;gene_name=PRY2;ID=start_codon:HG003_chrY_T0000680;Name=PRY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23005018	23007592	.	+	.	source_transcript=hg002_chrY_paternal_505.1;source_transcript_name=hg002_chrY_paternal_505.1;source_gene=hg002_chrY_paternal_505;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_505;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_505.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_505.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY2;alternative_source_transcripts=hg002_chrY_paternal_505.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000680;gene_id=HG003_chrY_G0000247;Parent=HG003_chrY_T0000680;transcript_name=hg002_chrY_paternal_505.1;gene_name=PRY2;ID=intron:HG003_chrY_T0000680:2;Name=PRY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23007593	23007708	.	+	.	source_transcript=hg002_chrY_paternal_505.1;source_transcript_name=hg002_chrY_paternal_505.1;source_gene=hg002_chrY_paternal_505;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_505;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_505.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_505.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY2;alternative_source_transcripts=hg002_chrY_paternal_505.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000680;gene_id=HG003_chrY_G0000247;Parent=HG003_chrY_T0000680;transcript_name=hg002_chrY_paternal_505.1;gene_name=PRY2;ID=exon:HG003_chrY_T0000680:3;Name=PRY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23007593	23007708	.	+	0	source_transcript=hg002_chrY_paternal_505.1;source_transcript_name=hg002_chrY_paternal_505.1;source_gene=hg002_chrY_paternal_505;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_505;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_505.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_505.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY2;alternative_source_transcripts=hg002_chrY_paternal_505.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000680;gene_id=HG003_chrY_G0000247;Parent=HG003_chrY_T0000680;transcript_name=hg002_chrY_paternal_505.1;gene_name=PRY2;ID=CDS:HG003_chrY_T0000680:1;Name=PRY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23007709	23017206	.	+	.	source_transcript=hg002_chrY_paternal_505.1;source_transcript_name=hg002_chrY_paternal_505.1;source_gene=hg002_chrY_paternal_505;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_505;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_505.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_505.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY2;alternative_source_transcripts=hg002_chrY_paternal_505.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000680;gene_id=HG003_chrY_G0000247;Parent=HG003_chrY_T0000680;transcript_name=hg002_chrY_paternal_505.1;gene_name=PRY2;ID=intron:HG003_chrY_T0000680:3;Name=PRY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23017207	23018032	.	+	.	source_transcript=hg002_chrY_paternal_505.1;source_transcript_name=hg002_chrY_paternal_505.1;source_gene=hg002_chrY_paternal_505;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_505;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_505.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_505.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY2;alternative_source_transcripts=hg002_chrY_paternal_505.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000680;gene_id=HG003_chrY_G0000247;Parent=HG003_chrY_T0000680;transcript_name=hg002_chrY_paternal_505.1;gene_name=PRY2;ID=exon:HG003_chrY_T0000680:4;Name=PRY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23017207	23017465	.	+	1	source_transcript=hg002_chrY_paternal_505.1;source_transcript_name=hg002_chrY_paternal_505.1;source_gene=hg002_chrY_paternal_505;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_505;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_505.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_505.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY2;alternative_source_transcripts=hg002_chrY_paternal_505.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000680;gene_id=HG003_chrY_G0000247;Parent=HG003_chrY_T0000680;transcript_name=hg002_chrY_paternal_505.1;gene_name=PRY2;ID=CDS:HG003_chrY_T0000680:2;Name=PRY2;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	23017463	23017465	.	+	0	source_transcript=hg002_chrY_paternal_505.1;source_transcript_name=hg002_chrY_paternal_505.1;source_gene=hg002_chrY_paternal_505;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_505;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_505.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_505.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY2;alternative_source_transcripts=hg002_chrY_paternal_505.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000680;gene_id=HG003_chrY_G0000247;Parent=HG003_chrY_T0000680;transcript_name=hg002_chrY_paternal_505.1;gene_name=PRY2;ID=stop_codon:HG003_chrY_T0000680;Name=PRY2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	23059442	23061439	.	-	.	source_gene_common_name=LOC107987357;source_gene=hg002_chrY_paternal_510;alternative_source_transcripts=hg002_chrY_paternal_510.1;gene_id=HG003_chrY_G0000248;gene_biotype=lncRNA;gene_name=LOC107987357;gene_sources=liftoff;ID=HG003_chrY_G0000248;Name=LOC107987357
HG003_chrY	CAT	transcript	23059442	23061439	1000	-	.	source_transcript=hg002_chrY_paternal_510.1;source_transcript_name=hg002_chrY_paternal_510.1;source_gene=hg002_chrY_paternal_510;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_510;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_510.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_510.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987357;alternative_source_transcripts=hg002_chrY_paternal_510.1;transcript_id=HG003_chrY_T0000681;gene_id=HG003_chrY_G0000248;Parent=HG003_chrY_G0000248;transcript_name=hg002_chrY_paternal_510.1;gene_name=LOC107987357;ID=HG003_chrY_T0000681;Name=LOC107987357
HG003_chrY	CAT	exon	23059442	23059643	.	-	.	source_transcript=hg002_chrY_paternal_510.1;source_transcript_name=hg002_chrY_paternal_510.1;source_gene=hg002_chrY_paternal_510;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_510;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_510.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_510.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987357;alternative_source_transcripts=hg002_chrY_paternal_510.1;transcript_id=HG003_chrY_T0000681;gene_id=HG003_chrY_G0000248;Parent=HG003_chrY_T0000681;transcript_name=hg002_chrY_paternal_510.1;gene_name=LOC107987357;ID=exon:HG003_chrY_T0000681:0;Name=LOC107987357;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23059644	23061178	.	-	.	source_transcript=hg002_chrY_paternal_510.1;source_transcript_name=hg002_chrY_paternal_510.1;source_gene=hg002_chrY_paternal_510;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_510;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_510.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_510.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987357;alternative_source_transcripts=hg002_chrY_paternal_510.1;transcript_id=HG003_chrY_T0000681;gene_id=HG003_chrY_G0000248;Parent=HG003_chrY_T0000681;transcript_name=hg002_chrY_paternal_510.1;gene_name=LOC107987357;ID=intron:HG003_chrY_T0000681:0;Name=LOC107987357;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23061179	23061239	.	-	.	source_transcript=hg002_chrY_paternal_510.1;source_transcript_name=hg002_chrY_paternal_510.1;source_gene=hg002_chrY_paternal_510;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_510;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_510.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_510.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987357;alternative_source_transcripts=hg002_chrY_paternal_510.1;transcript_id=HG003_chrY_T0000681;gene_id=HG003_chrY_G0000248;Parent=HG003_chrY_T0000681;transcript_name=hg002_chrY_paternal_510.1;gene_name=LOC107987357;ID=exon:HG003_chrY_T0000681:1;Name=LOC107987357;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23061240	23061356	.	-	.	source_transcript=hg002_chrY_paternal_510.1;source_transcript_name=hg002_chrY_paternal_510.1;source_gene=hg002_chrY_paternal_510;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_510;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_510.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_510.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987357;alternative_source_transcripts=hg002_chrY_paternal_510.1;transcript_id=HG003_chrY_T0000681;gene_id=HG003_chrY_G0000248;Parent=HG003_chrY_T0000681;transcript_name=hg002_chrY_paternal_510.1;gene_name=LOC107987357;ID=intron:HG003_chrY_T0000681:1;Name=LOC107987357;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23061357	23061439	.	-	.	source_transcript=hg002_chrY_paternal_510.1;source_transcript_name=hg002_chrY_paternal_510.1;source_gene=hg002_chrY_paternal_510;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_510;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_510.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_510.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987357;alternative_source_transcripts=hg002_chrY_paternal_510.1;transcript_id=HG003_chrY_T0000681;gene_id=HG003_chrY_G0000248;Parent=HG003_chrY_T0000681;transcript_name=hg002_chrY_paternal_510.1;gene_name=LOC107987357;ID=exon:HG003_chrY_T0000681:2;Name=LOC107987357;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	23289637	23300875	.	+	.	source_gene_common_name=LOC107987348;source_gene=hg002_chrY_paternal_515;alternative_source_transcripts=hg002_chrY_paternal_515.2;gene_id=HG003_chrY_G0000249;gene_biotype=lncRNA;gene_name=LOC107987348;gene_sources=liftoff;ID=HG003_chrY_G0000249;Name=LOC107987348
HG003_chrY	CAT	transcript	23289637	23300875	1000	+	.	source_transcript=hg002_chrY_paternal_515.2;source_transcript_name=hg002_chrY_paternal_515.1;source_gene=hg002_chrY_paternal_515;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_515;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_515.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_515.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987348;alternative_source_transcripts=hg002_chrY_paternal_515.2;transcript_id=HG003_chrY_T0000682;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_G0000249;transcript_name=hg002_chrY_paternal_515.1;gene_name=LOC107987348;ID=HG003_chrY_T0000682;Name=LOC107987348
HG003_chrY	CAT	exon	23289637	23290092	.	+	.	source_transcript=hg002_chrY_paternal_515.2;source_transcript_name=hg002_chrY_paternal_515.1;source_gene=hg002_chrY_paternal_515;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_515;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_515.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_515.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987348;alternative_source_transcripts=hg002_chrY_paternal_515.2;transcript_id=HG003_chrY_T0000682;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000682;transcript_name=hg002_chrY_paternal_515.1;gene_name=LOC107987348;ID=exon:HG003_chrY_T0000682:0;Name=LOC107987348;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23290093	23295594	.	+	.	source_transcript=hg002_chrY_paternal_515.2;source_transcript_name=hg002_chrY_paternal_515.1;source_gene=hg002_chrY_paternal_515;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_515;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_515.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_515.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987348;alternative_source_transcripts=hg002_chrY_paternal_515.2;transcript_id=HG003_chrY_T0000682;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000682;transcript_name=hg002_chrY_paternal_515.1;gene_name=LOC107987348;ID=intron:HG003_chrY_T0000682:0;Name=LOC107987348;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23295595	23298227	.	+	.	source_transcript=hg002_chrY_paternal_515.2;source_transcript_name=hg002_chrY_paternal_515.1;source_gene=hg002_chrY_paternal_515;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_515;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_515.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_515.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987348;alternative_source_transcripts=hg002_chrY_paternal_515.2;transcript_id=HG003_chrY_T0000682;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000682;transcript_name=hg002_chrY_paternal_515.1;gene_name=LOC107987348;ID=exon:HG003_chrY_T0000682:1;Name=LOC107987348;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23298228	23298868	.	+	.	source_transcript=hg002_chrY_paternal_515.2;source_transcript_name=hg002_chrY_paternal_515.1;source_gene=hg002_chrY_paternal_515;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_515;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_515.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_515.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987348;alternative_source_transcripts=hg002_chrY_paternal_515.2;transcript_id=HG003_chrY_T0000682;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000682;transcript_name=hg002_chrY_paternal_515.1;gene_name=LOC107987348;ID=intron:HG003_chrY_T0000682:1;Name=LOC107987348;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23298869	23300875	.	+	.	source_transcript=hg002_chrY_paternal_515.2;source_transcript_name=hg002_chrY_paternal_515.1;source_gene=hg002_chrY_paternal_515;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_515;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_515.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_515.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987348;alternative_source_transcripts=hg002_chrY_paternal_515.2;transcript_id=HG003_chrY_T0000682;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000682;transcript_name=hg002_chrY_paternal_515.1;gene_name=LOC107987348;ID=exon:HG003_chrY_T0000682:2;Name=LOC107987348;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	23289637	23300875	1000	+	.	source_transcript=hg002_chrY_paternal_515.1;source_transcript_name=hg002_chrY_paternal_515.1;source_gene=hg002_chrY_paternal_515;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_515;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_515.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_515.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987348;alternative_source_transcripts=hg002_chrY_paternal_515.1;transcript_id=HG003_chrY_T0000683;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_G0000249;transcript_name=hg002_chrY_paternal_515.1;gene_name=LOC107987348;ID=HG003_chrY_T0000683;Name=LOC107987348
HG003_chrY	CAT	exon	23289637	23290092	.	+	.	source_transcript=hg002_chrY_paternal_515.1;source_transcript_name=hg002_chrY_paternal_515.1;source_gene=hg002_chrY_paternal_515;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_515;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_515.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_515.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987348;alternative_source_transcripts=hg002_chrY_paternal_515.1;transcript_id=HG003_chrY_T0000683;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000683;transcript_name=hg002_chrY_paternal_515.1;gene_name=LOC107987348;ID=exon:HG003_chrY_T0000683:0;Name=LOC107987348;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23290093	23296062	.	+	.	source_transcript=hg002_chrY_paternal_515.1;source_transcript_name=hg002_chrY_paternal_515.1;source_gene=hg002_chrY_paternal_515;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_515;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_515.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_515.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987348;alternative_source_transcripts=hg002_chrY_paternal_515.1;transcript_id=HG003_chrY_T0000683;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000683;transcript_name=hg002_chrY_paternal_515.1;gene_name=LOC107987348;ID=intron:HG003_chrY_T0000683:0;Name=LOC107987348;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23296063	23298227	.	+	.	source_transcript=hg002_chrY_paternal_515.1;source_transcript_name=hg002_chrY_paternal_515.1;source_gene=hg002_chrY_paternal_515;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_515;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_515.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_515.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987348;alternative_source_transcripts=hg002_chrY_paternal_515.1;transcript_id=HG003_chrY_T0000683;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000683;transcript_name=hg002_chrY_paternal_515.1;gene_name=LOC107987348;ID=exon:HG003_chrY_T0000683:1;Name=LOC107987348;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23298228	23298868	.	+	.	source_transcript=hg002_chrY_paternal_515.1;source_transcript_name=hg002_chrY_paternal_515.1;source_gene=hg002_chrY_paternal_515;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_515;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_515.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_515.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987348;alternative_source_transcripts=hg002_chrY_paternal_515.1;transcript_id=HG003_chrY_T0000683;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000683;transcript_name=hg002_chrY_paternal_515.1;gene_name=LOC107987348;ID=intron:HG003_chrY_T0000683:1;Name=LOC107987348;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23298869	23300875	.	+	.	source_transcript=hg002_chrY_paternal_515.1;source_transcript_name=hg002_chrY_paternal_515.1;source_gene=hg002_chrY_paternal_515;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_515;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_515.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_515.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987348;alternative_source_transcripts=hg002_chrY_paternal_515.1;transcript_id=HG003_chrY_T0000683;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000683;transcript_name=hg002_chrY_paternal_515.1;gene_name=LOC107987348;ID=exon:HG003_chrY_T0000683:2;Name=LOC107987348;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	23355012	23356143	.	+	.	source_gene_common_name=TTTY17A;source_gene=hg002_chrY_paternal_516;alternative_source_transcripts=hg002_chrY_paternal_516.1;gene_id=HG003_chrY_G0000250;gene_biotype=lncRNA;gene_name=TTTY17A;gene_sources=liftoff;ID=HG003_chrY_G0000250;Name=TTTY17A
HG003_chrY	CAT	transcript	23355012	23356143	1000	+	.	source_transcript=hg002_chrY_paternal_516.1;source_transcript_name=hg002_chrY_paternal_516.1;source_gene=hg002_chrY_paternal_516;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_516;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_516.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_516.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17A;alternative_source_transcripts=hg002_chrY_paternal_516.1;transcript_id=HG003_chrY_T0000684;gene_id=HG003_chrY_G0000250;Parent=HG003_chrY_G0000250;transcript_name=hg002_chrY_paternal_516.1;gene_name=TTTY17A;ID=HG003_chrY_T0000684;Name=TTTY17A
HG003_chrY	CAT	exon	23355012	23355071	.	+	.	source_transcript=hg002_chrY_paternal_516.1;source_transcript_name=hg002_chrY_paternal_516.1;source_gene=hg002_chrY_paternal_516;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_516;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_516.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_516.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17A;alternative_source_transcripts=hg002_chrY_paternal_516.1;transcript_id=HG003_chrY_T0000684;gene_id=HG003_chrY_G0000250;Parent=HG003_chrY_T0000684;transcript_name=hg002_chrY_paternal_516.1;gene_name=TTTY17A;ID=exon:HG003_chrY_T0000684:0;Name=TTTY17A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23355072	23356037	.	+	.	source_transcript=hg002_chrY_paternal_516.1;source_transcript_name=hg002_chrY_paternal_516.1;source_gene=hg002_chrY_paternal_516;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_516;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_516.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_516.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17A;alternative_source_transcripts=hg002_chrY_paternal_516.1;transcript_id=HG003_chrY_T0000684;gene_id=HG003_chrY_G0000250;Parent=HG003_chrY_T0000684;transcript_name=hg002_chrY_paternal_516.1;gene_name=TTTY17A;ID=intron:HG003_chrY_T0000684:0;Name=TTTY17A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23356038	23356143	.	+	.	source_transcript=hg002_chrY_paternal_516.1;source_transcript_name=hg002_chrY_paternal_516.1;source_gene=hg002_chrY_paternal_516;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_516;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_516.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_516.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17A;alternative_source_transcripts=hg002_chrY_paternal_516.1;transcript_id=HG003_chrY_T0000684;gene_id=HG003_chrY_G0000250;Parent=HG003_chrY_T0000684;transcript_name=hg002_chrY_paternal_516.1;gene_name=TTTY17A;ID=exon:HG003_chrY_T0000684:1;Name=TTTY17A;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	23439891	23476701	.	+	.	source_gene_common_name=TTTY4C;source_gene=hg002_chrY_paternal_519;alternative_source_transcripts=hg002_chrY_paternal_519.1;gene_id=HG003_chrY_G0000251;gene_biotype=lncRNA;gene_name=TTTY4C;gene_sources=liftoff;ID=HG003_chrY_G0000251;Name=TTTY4C
HG003_chrY	CAT	transcript	23439891	23476701	1000	+	.	source_transcript=hg002_chrY_paternal_519.1;source_transcript_name=hg002_chrY_paternal_519.1;source_gene=hg002_chrY_paternal_519;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_519;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_519.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_519.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4C;alternative_source_transcripts=hg002_chrY_paternal_519.1;transcript_id=HG003_chrY_T0000685;gene_id=HG003_chrY_G0000251;Parent=HG003_chrY_G0000251;transcript_name=hg002_chrY_paternal_519.1;gene_name=TTTY4C;ID=HG003_chrY_T0000685;Name=TTTY4C
HG003_chrY	CAT	exon	23439891	23440051	.	+	.	source_transcript=hg002_chrY_paternal_519.1;source_transcript_name=hg002_chrY_paternal_519.1;source_gene=hg002_chrY_paternal_519;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_519;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_519.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_519.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4C;alternative_source_transcripts=hg002_chrY_paternal_519.1;transcript_id=HG003_chrY_T0000685;gene_id=HG003_chrY_G0000251;Parent=HG003_chrY_T0000685;transcript_name=hg002_chrY_paternal_519.1;gene_name=TTTY4C;ID=exon:HG003_chrY_T0000685:0;Name=TTTY4C;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23440052	23467062	.	+	.	source_transcript=hg002_chrY_paternal_519.1;source_transcript_name=hg002_chrY_paternal_519.1;source_gene=hg002_chrY_paternal_519;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_519;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_519.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_519.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4C;alternative_source_transcripts=hg002_chrY_paternal_519.1;transcript_id=HG003_chrY_T0000685;gene_id=HG003_chrY_G0000251;Parent=HG003_chrY_T0000685;transcript_name=hg002_chrY_paternal_519.1;gene_name=TTTY4C;ID=intron:HG003_chrY_T0000685:0;Name=TTTY4C;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23467063	23467138	.	+	.	source_transcript=hg002_chrY_paternal_519.1;source_transcript_name=hg002_chrY_paternal_519.1;source_gene=hg002_chrY_paternal_519;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_519;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_519.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_519.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4C;alternative_source_transcripts=hg002_chrY_paternal_519.1;transcript_id=HG003_chrY_T0000685;gene_id=HG003_chrY_G0000251;Parent=HG003_chrY_T0000685;transcript_name=hg002_chrY_paternal_519.1;gene_name=TTTY4C;ID=exon:HG003_chrY_T0000685:1;Name=TTTY4C;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23467139	23468942	.	+	.	source_transcript=hg002_chrY_paternal_519.1;source_transcript_name=hg002_chrY_paternal_519.1;source_gene=hg002_chrY_paternal_519;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_519;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_519.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_519.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4C;alternative_source_transcripts=hg002_chrY_paternal_519.1;transcript_id=HG003_chrY_T0000685;gene_id=HG003_chrY_G0000251;Parent=HG003_chrY_T0000685;transcript_name=hg002_chrY_paternal_519.1;gene_name=TTTY4C;ID=intron:HG003_chrY_T0000685:1;Name=TTTY4C;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23468943	23469050	.	+	.	source_transcript=hg002_chrY_paternal_519.1;source_transcript_name=hg002_chrY_paternal_519.1;source_gene=hg002_chrY_paternal_519;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_519;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_519.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_519.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4C;alternative_source_transcripts=hg002_chrY_paternal_519.1;transcript_id=HG003_chrY_T0000685;gene_id=HG003_chrY_G0000251;Parent=HG003_chrY_T0000685;transcript_name=hg002_chrY_paternal_519.1;gene_name=TTTY4C;ID=exon:HG003_chrY_T0000685:2;Name=TTTY4C;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23469051	23475700	.	+	.	source_transcript=hg002_chrY_paternal_519.1;source_transcript_name=hg002_chrY_paternal_519.1;source_gene=hg002_chrY_paternal_519;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_519;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_519.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_519.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4C;alternative_source_transcripts=hg002_chrY_paternal_519.1;transcript_id=HG003_chrY_T0000685;gene_id=HG003_chrY_G0000251;Parent=HG003_chrY_T0000685;transcript_name=hg002_chrY_paternal_519.1;gene_name=TTTY4C;ID=intron:HG003_chrY_T0000685:2;Name=TTTY4C;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23475701	23476701	.	+	.	source_transcript=hg002_chrY_paternal_519.1;source_transcript_name=hg002_chrY_paternal_519.1;source_gene=hg002_chrY_paternal_519;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_519;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_519.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_519.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4C;alternative_source_transcripts=hg002_chrY_paternal_519.1;transcript_id=HG003_chrY_T0000685;gene_id=HG003_chrY_G0000251;Parent=HG003_chrY_T0000685;transcript_name=hg002_chrY_paternal_519.1;gene_name=TTTY4C;ID=exon:HG003_chrY_T0000685:3;Name=TTTY4C;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	23487680	23508883	.	+	.	source_gene_common_name=BPY2C;source_gene=hg002_chrY_paternal_520;alternative_source_transcripts=hg002_chrY_paternal_520.1;gene_id=HG003_chrY_G0000252;gene_biotype=protein_coding;gene_name=BPY2C;gene_sources=liftoff;ID=HG003_chrY_G0000252;Name=BPY2C
HG003_chrY	CAT	transcript	23487680	23508883	100	+	.	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=hg002_chrY_paternal_520.1;transcript_id=HG003_chrY_T0000686;gene_id=HG003_chrY_G0000252;Parent=HG003_chrY_G0000252;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=HG003_chrY_T0000686;Name=BPY2C
HG003_chrY	CAT	exon	23487680	23487710	.	+	.	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=hg002_chrY_paternal_520.1;transcript_id=HG003_chrY_T0000686;gene_id=HG003_chrY_G0000252;Parent=HG003_chrY_T0000686;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=exon:HG003_chrY_T0000686:0;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23487711	23487985	.	+	.	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=hg002_chrY_paternal_520.1;transcript_id=HG003_chrY_T0000686;gene_id=HG003_chrY_G0000252;Parent=HG003_chrY_T0000686;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=intron:HG003_chrY_T0000686:0;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23487986	23488108	.	+	.	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=hg002_chrY_paternal_520.1;transcript_id=HG003_chrY_T0000686;gene_id=HG003_chrY_G0000252;Parent=HG003_chrY_T0000686;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=exon:HG003_chrY_T0000686:1;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23488109	23491173	.	+	.	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=hg002_chrY_paternal_520.1;transcript_id=HG003_chrY_T0000686;gene_id=HG003_chrY_G0000252;Parent=HG003_chrY_T0000686;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=intron:HG003_chrY_T0000686:1;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23491174	23491310	.	+	.	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=hg002_chrY_paternal_520.1;transcript_id=HG003_chrY_T0000686;gene_id=HG003_chrY_G0000252;Parent=HG003_chrY_T0000686;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=exon:HG003_chrY_T0000686:2;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23491311	23495719	.	+	.	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=hg002_chrY_paternal_520.1;transcript_id=HG003_chrY_T0000686;gene_id=HG003_chrY_G0000252;Parent=HG003_chrY_T0000686;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=intron:HG003_chrY_T0000686:2;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23495720	23495838	.	+	.	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=hg002_chrY_paternal_520.1;transcript_id=HG003_chrY_T0000686;gene_id=HG003_chrY_G0000252;Parent=HG003_chrY_T0000686;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=exon:HG003_chrY_T0000686:3;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23495761	23495838	.	+	0	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=hg002_chrY_paternal_520.1;transcript_id=HG003_chrY_T0000686;gene_id=HG003_chrY_G0000252;Parent=HG003_chrY_T0000686;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=CDS:HG003_chrY_T0000686:0;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	23495761	23495763	.	+	0	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=hg002_chrY_paternal_520.1;transcript_id=HG003_chrY_T0000686;gene_id=HG003_chrY_G0000252;Parent=HG003_chrY_T0000686;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=start_codon:HG003_chrY_T0000686;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23495839	23497897	.	+	.	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=hg002_chrY_paternal_520.1;transcript_id=HG003_chrY_T0000686;gene_id=HG003_chrY_G0000252;Parent=HG003_chrY_T0000686;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=intron:HG003_chrY_T0000686:3;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23497898	23498015	.	+	.	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=hg002_chrY_paternal_520.1;transcript_id=HG003_chrY_T0000686;gene_id=HG003_chrY_G0000252;Parent=HG003_chrY_T0000686;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=exon:HG003_chrY_T0000686:4;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23497898	23498015	.	+	0	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=hg002_chrY_paternal_520.1;transcript_id=HG003_chrY_T0000686;gene_id=HG003_chrY_G0000252;Parent=HG003_chrY_T0000686;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=CDS:HG003_chrY_T0000686:1;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23498016	23500869	.	+	.	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=hg002_chrY_paternal_520.1;transcript_id=HG003_chrY_T0000686;gene_id=HG003_chrY_G0000252;Parent=HG003_chrY_T0000686;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=intron:HG003_chrY_T0000686:4;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23500870	23500975	.	+	.	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=hg002_chrY_paternal_520.1;transcript_id=HG003_chrY_T0000686;gene_id=HG003_chrY_G0000252;Parent=HG003_chrY_T0000686;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=exon:HG003_chrY_T0000686:5;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23500870	23500975	.	+	2	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=hg002_chrY_paternal_520.1;transcript_id=HG003_chrY_T0000686;gene_id=HG003_chrY_G0000252;Parent=HG003_chrY_T0000686;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=CDS:HG003_chrY_T0000686:2;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23500976	23501667	.	+	.	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=hg002_chrY_paternal_520.1;transcript_id=HG003_chrY_T0000686;gene_id=HG003_chrY_G0000252;Parent=HG003_chrY_T0000686;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=intron:HG003_chrY_T0000686:5;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23501668	23501792	.	+	.	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=hg002_chrY_paternal_520.1;transcript_id=HG003_chrY_T0000686;gene_id=HG003_chrY_G0000252;Parent=HG003_chrY_T0000686;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=exon:HG003_chrY_T0000686:6;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23501668	23501686	.	+	1	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=hg002_chrY_paternal_520.1;transcript_id=HG003_chrY_T0000686;gene_id=HG003_chrY_G0000252;Parent=HG003_chrY_T0000686;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=CDS:HG003_chrY_T0000686:3;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	23501684	23501686	.	+	0	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=hg002_chrY_paternal_520.1;transcript_id=HG003_chrY_T0000686;gene_id=HG003_chrY_G0000252;Parent=HG003_chrY_T0000686;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=stop_codon:HG003_chrY_T0000686;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23501793	23508342	.	+	.	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=hg002_chrY_paternal_520.1;transcript_id=HG003_chrY_T0000686;gene_id=HG003_chrY_G0000252;Parent=HG003_chrY_T0000686;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=intron:HG003_chrY_T0000686:6;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23508343	23508467	.	+	.	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=hg002_chrY_paternal_520.1;transcript_id=HG003_chrY_T0000686;gene_id=HG003_chrY_G0000252;Parent=HG003_chrY_T0000686;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=exon:HG003_chrY_T0000686:7;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23508468	23508561	.	+	.	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=hg002_chrY_paternal_520.1;transcript_id=HG003_chrY_T0000686;gene_id=HG003_chrY_G0000252;Parent=HG003_chrY_T0000686;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=intron:HG003_chrY_T0000686:7;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23508562	23508883	.	+	.	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=hg002_chrY_paternal_520.1;transcript_id=HG003_chrY_T0000686;gene_id=HG003_chrY_G0000252;Parent=HG003_chrY_T0000686;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=exon:HG003_chrY_T0000686:8;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	23609779	23613120	.	-	.	source_gene_common_name=LOC105377241;source_gene=hg002_chrY_paternal_525;alternative_source_transcripts=hg002_chrY_paternal_525.1;gene_id=HG003_chrY_G0000253;gene_biotype=lncRNA;gene_name=LOC105377241;gene_sources=liftoff;ID=HG003_chrY_G0000253;Name=LOC105377241
HG003_chrY	CAT	transcript	23609779	23613120	1000	-	.	source_transcript=hg002_chrY_paternal_525.1;source_transcript_name=hg002_chrY_paternal_525.1;source_gene=hg002_chrY_paternal_525;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_525;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_525.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_525.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377241;alternative_source_transcripts=hg002_chrY_paternal_525.1;transcript_id=HG003_chrY_T0000687;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_G0000253;transcript_name=hg002_chrY_paternal_525.1;gene_name=LOC105377241;ID=HG003_chrY_T0000687;Name=LOC105377241
HG003_chrY	CAT	exon	23609779	23609879	.	-	.	source_transcript=hg002_chrY_paternal_525.1;source_transcript_name=hg002_chrY_paternal_525.1;source_gene=hg002_chrY_paternal_525;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_525;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_525.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_525.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377241;alternative_source_transcripts=hg002_chrY_paternal_525.1;transcript_id=HG003_chrY_T0000687;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000687;transcript_name=hg002_chrY_paternal_525.1;gene_name=LOC105377241;ID=exon:HG003_chrY_T0000687:0;Name=LOC105377241;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23609880	23612210	.	-	.	source_transcript=hg002_chrY_paternal_525.1;source_transcript_name=hg002_chrY_paternal_525.1;source_gene=hg002_chrY_paternal_525;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_525;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_525.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_525.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377241;alternative_source_transcripts=hg002_chrY_paternal_525.1;transcript_id=HG003_chrY_T0000687;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000687;transcript_name=hg002_chrY_paternal_525.1;gene_name=LOC105377241;ID=intron:HG003_chrY_T0000687:0;Name=LOC105377241;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23612211	23612275	.	-	.	source_transcript=hg002_chrY_paternal_525.1;source_transcript_name=hg002_chrY_paternal_525.1;source_gene=hg002_chrY_paternal_525;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_525;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_525.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_525.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377241;alternative_source_transcripts=hg002_chrY_paternal_525.1;transcript_id=HG003_chrY_T0000687;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000687;transcript_name=hg002_chrY_paternal_525.1;gene_name=LOC105377241;ID=exon:HG003_chrY_T0000687:1;Name=LOC105377241;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23612276	23612937	.	-	.	source_transcript=hg002_chrY_paternal_525.1;source_transcript_name=hg002_chrY_paternal_525.1;source_gene=hg002_chrY_paternal_525;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_525;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_525.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_525.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377241;alternative_source_transcripts=hg002_chrY_paternal_525.1;transcript_id=HG003_chrY_T0000687;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000687;transcript_name=hg002_chrY_paternal_525.1;gene_name=LOC105377241;ID=intron:HG003_chrY_T0000687:1;Name=LOC105377241;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23612938	23613120	.	-	.	source_transcript=hg002_chrY_paternal_525.1;source_transcript_name=hg002_chrY_paternal_525.1;source_gene=hg002_chrY_paternal_525;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_525;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_525.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_525.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377241;alternative_source_transcripts=hg002_chrY_paternal_525.1;transcript_id=HG003_chrY_T0000687;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000687;transcript_name=hg002_chrY_paternal_525.1;gene_name=LOC105377241;ID=exon:HG003_chrY_T0000687:2;Name=LOC105377241;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	23609779	23613120	1000	-	.	source_transcript=hg002_chrY_paternal_525.2;source_transcript_name=hg002_chrY_paternal_525.1;source_gene=hg002_chrY_paternal_525;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_525;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_525.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_525.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377241;alternative_source_transcripts=hg002_chrY_paternal_525.2;transcript_id=HG003_chrY_T0000688;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_G0000253;transcript_name=hg002_chrY_paternal_525.1;gene_name=LOC105377241;ID=HG003_chrY_T0000688;Name=LOC105377241
HG003_chrY	CAT	exon	23609779	23609879	.	-	.	source_transcript=hg002_chrY_paternal_525.2;source_transcript_name=hg002_chrY_paternal_525.1;source_gene=hg002_chrY_paternal_525;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_525;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_525.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_525.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377241;alternative_source_transcripts=hg002_chrY_paternal_525.2;transcript_id=HG003_chrY_T0000688;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000688;transcript_name=hg002_chrY_paternal_525.1;gene_name=LOC105377241;ID=exon:HG003_chrY_T0000688:0;Name=LOC105377241;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23609880	23612237	.	-	.	source_transcript=hg002_chrY_paternal_525.2;source_transcript_name=hg002_chrY_paternal_525.1;source_gene=hg002_chrY_paternal_525;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_525;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_525.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_525.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377241;alternative_source_transcripts=hg002_chrY_paternal_525.2;transcript_id=HG003_chrY_T0000688;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000688;transcript_name=hg002_chrY_paternal_525.1;gene_name=LOC105377241;ID=intron:HG003_chrY_T0000688:0;Name=LOC105377241;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23612238	23612275	.	-	.	source_transcript=hg002_chrY_paternal_525.2;source_transcript_name=hg002_chrY_paternal_525.1;source_gene=hg002_chrY_paternal_525;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_525;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_525.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_525.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377241;alternative_source_transcripts=hg002_chrY_paternal_525.2;transcript_id=HG003_chrY_T0000688;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000688;transcript_name=hg002_chrY_paternal_525.1;gene_name=LOC105377241;ID=exon:HG003_chrY_T0000688:1;Name=LOC105377241;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23612276	23612937	.	-	.	source_transcript=hg002_chrY_paternal_525.2;source_transcript_name=hg002_chrY_paternal_525.1;source_gene=hg002_chrY_paternal_525;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_525;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_525.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_525.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377241;alternative_source_transcripts=hg002_chrY_paternal_525.2;transcript_id=HG003_chrY_T0000688;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000688;transcript_name=hg002_chrY_paternal_525.1;gene_name=LOC105377241;ID=intron:HG003_chrY_T0000688:1;Name=LOC105377241;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23612938	23613120	.	-	.	source_transcript=hg002_chrY_paternal_525.2;source_transcript_name=hg002_chrY_paternal_525.1;source_gene=hg002_chrY_paternal_525;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_525;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_525.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_525.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377241;alternative_source_transcripts=hg002_chrY_paternal_525.2;transcript_id=HG003_chrY_T0000688;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000688;transcript_name=hg002_chrY_paternal_525.1;gene_name=LOC105377241;ID=exon:HG003_chrY_T0000688:2;Name=LOC105377241;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	23632738	23693936	.	-	.	source_gene_common_name=DAZ3;source_gene=hg002_chrY_paternal_526;alternative_source_transcripts=hg002_chrY_paternal_526.1;gene_id=HG003_chrY_G0000254;gene_biotype=protein_coding;gene_name=DAZ3;gene_sources=liftoff;ID=HG003_chrY_G0000254;Name=DAZ3
HG003_chrY	CAT	transcript	23632738	23693936	100	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_G0000254;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=HG003_chrY_T0000689;Name=DAZ3
HG003_chrY	CAT	exon	23632738	23634594	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:HG003_chrY_T0000689:0;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23634595	23638567	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:HG003_chrY_T0000689:0;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23638568	23638666	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:HG003_chrY_T0000689:1;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23638603	23638666	.	-	1	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:HG003_chrY_T0000689:0;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	23638603	23638605	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=stop_codon:HG003_chrY_T0000689;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23638667	23643238	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:HG003_chrY_T0000689:1;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23643239	23643273	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:HG003_chrY_T0000689:2;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23643239	23643273	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:HG003_chrY_T0000689:1;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23643274	23644018	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:HG003_chrY_T0000689:2;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23644019	23644090	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:HG003_chrY_T0000689:3;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23644019	23644090	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:HG003_chrY_T0000689:2;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23644091	23653805	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:HG003_chrY_T0000689:3;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23653806	23653877	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:HG003_chrY_T0000689:4;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23653806	23653877	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:HG003_chrY_T0000689:3;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23653878	23656182	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:HG003_chrY_T0000689:4;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23656183	23656254	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:HG003_chrY_T0000689:5;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23656183	23656254	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:HG003_chrY_T0000689:4;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23656255	23658562	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:HG003_chrY_T0000689:5;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23658563	23658634	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:HG003_chrY_T0000689:6;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23658563	23658634	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:HG003_chrY_T0000689:5;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23658635	23660939	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:HG003_chrY_T0000689:6;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23660940	23661011	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:HG003_chrY_T0000689:7;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23660940	23661011	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:HG003_chrY_T0000689:6;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23661012	23663335	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:HG003_chrY_T0000689:7;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23663336	23663407	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:HG003_chrY_T0000689:8;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23663336	23663407	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:HG003_chrY_T0000689:7;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23663408	23665719	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:HG003_chrY_T0000689:8;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23665720	23665791	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:HG003_chrY_T0000689:9;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23665720	23665791	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:HG003_chrY_T0000689:8;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23665792	23668115	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:HG003_chrY_T0000689:9;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23668116	23668187	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:HG003_chrY_T0000689:10;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23668116	23668187	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:HG003_chrY_T0000689:9;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23668188	23670505	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:HG003_chrY_T0000689:10;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23670506	23670577	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:HG003_chrY_T0000689:11;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23670506	23670577	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:HG003_chrY_T0000689:10;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23670578	23672948	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:HG003_chrY_T0000689:11;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23672949	23673020	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:HG003_chrY_T0000689:12;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23672949	23673020	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:HG003_chrY_T0000689:11;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23673021	23685270	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:HG003_chrY_T0000689:12;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23685271	23685410	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:HG003_chrY_T0000689:13;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23685271	23685410	.	-	2	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:HG003_chrY_T0000689:12;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23685411	23685499	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:HG003_chrY_T0000689:13;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23685500	23685563	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:HG003_chrY_T0000689:14;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23685500	23685563	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:HG003_chrY_T0000689:13;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23685564	23685999	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:HG003_chrY_T0000689:14;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23686000	23686051	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:HG003_chrY_T0000689:15;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23686000	23686051	.	-	1	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:HG003_chrY_T0000689:14;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23686052	23686611	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:HG003_chrY_T0000689:15;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23686612	23686703	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:HG003_chrY_T0000689:16;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23686612	23686703	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:HG003_chrY_T0000689:15;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23686704	23686977	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:HG003_chrY_T0000689:16;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23686978	23687124	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:HG003_chrY_T0000689:17;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23686978	23687124	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:HG003_chrY_T0000689:16;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23687125	23693725	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:HG003_chrY_T0000689:17;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23693726	23693936	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:HG003_chrY_T0000689:18;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23693726	23693728	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:HG003_chrY_T0000689:17;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	23693726	23693728	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000689;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=start_codon:HG003_chrY_T0000689;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	23714363	23767204	.	+	.	source_gene_common_name=DAZ4;source_gene=hg002_chrY_paternal_527;alternative_source_transcripts=hg002_chrY_paternal_527.2;gene_id=HG003_chrY_G0000255;gene_biotype=protein_coding;gene_name=DAZ4;gene_sources=liftoff;ID=HG003_chrY_G0000255;Name=DAZ4
HG003_chrY	CAT	transcript	23714363	23767204	100	+	.	source_transcript=hg002_chrY_paternal_527.2;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.2;transcript_id=HG003_chrY_T0000690;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_G0000255;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=HG003_chrY_T0000690;Name=DAZ4
HG003_chrY	CAT	exon	23714363	23714672	.	+	.	source_transcript=hg002_chrY_paternal_527.2;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.2;transcript_id=HG003_chrY_T0000690;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000690;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=exon:HG003_chrY_T0000690:0;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23714670	23714672	.	+	0	source_transcript=hg002_chrY_paternal_527.2;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.2;transcript_id=HG003_chrY_T0000690;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000690;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=CDS:HG003_chrY_T0000690:0;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	23714670	23714672	.	+	0	source_transcript=hg002_chrY_paternal_527.2;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.2;transcript_id=HG003_chrY_T0000690;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000690;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=start_codon:HG003_chrY_T0000690;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23714673	23724527	.	+	.	source_transcript=hg002_chrY_paternal_527.2;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.2;transcript_id=HG003_chrY_T0000690;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000690;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=intron:HG003_chrY_T0000690:0;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23724528	23724599	.	+	.	source_transcript=hg002_chrY_paternal_527.2;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.2;transcript_id=HG003_chrY_T0000690;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000690;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=exon:HG003_chrY_T0000690:1;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23724528	23724599	.	+	0	source_transcript=hg002_chrY_paternal_527.2;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.2;transcript_id=HG003_chrY_T0000690;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000690;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=CDS:HG003_chrY_T0000690:1;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23724600	23726970	.	+	.	source_transcript=hg002_chrY_paternal_527.2;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.2;transcript_id=HG003_chrY_T0000690;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000690;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=intron:HG003_chrY_T0000690:1;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23726971	23727042	.	+	.	source_transcript=hg002_chrY_paternal_527.2;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.2;transcript_id=HG003_chrY_T0000690;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000690;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=exon:HG003_chrY_T0000690:2;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23726971	23727042	.	+	0	source_transcript=hg002_chrY_paternal_527.2;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.2;transcript_id=HG003_chrY_T0000690;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000690;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=CDS:HG003_chrY_T0000690:2;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23727043	23729360	.	+	.	source_transcript=hg002_chrY_paternal_527.2;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.2;transcript_id=HG003_chrY_T0000690;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000690;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=intron:HG003_chrY_T0000690:2;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23729361	23729432	.	+	.	source_transcript=hg002_chrY_paternal_527.2;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.2;transcript_id=HG003_chrY_T0000690;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000690;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=exon:HG003_chrY_T0000690:3;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23729361	23729432	.	+	0	source_transcript=hg002_chrY_paternal_527.2;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.2;transcript_id=HG003_chrY_T0000690;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000690;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=CDS:HG003_chrY_T0000690:3;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23729433	23731756	.	+	.	source_transcript=hg002_chrY_paternal_527.2;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.2;transcript_id=HG003_chrY_T0000690;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000690;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=intron:HG003_chrY_T0000690:3;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23731757	23731828	.	+	.	source_transcript=hg002_chrY_paternal_527.2;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.2;transcript_id=HG003_chrY_T0000690;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000690;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=exon:HG003_chrY_T0000690:4;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23731757	23731828	.	+	0	source_transcript=hg002_chrY_paternal_527.2;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.2;transcript_id=HG003_chrY_T0000690;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000690;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=CDS:HG003_chrY_T0000690:4;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23731829	23755851	.	+	.	source_transcript=hg002_chrY_paternal_527.2;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.2;transcript_id=HG003_chrY_T0000690;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000690;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=intron:HG003_chrY_T0000690:4;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23755852	23755923	.	+	.	source_transcript=hg002_chrY_paternal_527.2;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.2;transcript_id=HG003_chrY_T0000690;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000690;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=exon:HG003_chrY_T0000690:5;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23755852	23755923	.	+	0	source_transcript=hg002_chrY_paternal_527.2;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.2;transcript_id=HG003_chrY_T0000690;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000690;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=CDS:HG003_chrY_T0000690:5;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23755924	23756668	.	+	.	source_transcript=hg002_chrY_paternal_527.2;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.2;transcript_id=HG003_chrY_T0000690;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000690;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=intron:HG003_chrY_T0000690:5;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23756669	23756703	.	+	.	source_transcript=hg002_chrY_paternal_527.2;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.2;transcript_id=HG003_chrY_T0000690;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000690;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=exon:HG003_chrY_T0000690:6;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23756669	23756703	.	+	0	source_transcript=hg002_chrY_paternal_527.2;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.2;transcript_id=HG003_chrY_T0000690;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000690;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=CDS:HG003_chrY_T0000690:6;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23756704	23761275	.	+	.	source_transcript=hg002_chrY_paternal_527.2;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.2;transcript_id=HG003_chrY_T0000690;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000690;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=intron:HG003_chrY_T0000690:6;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23761276	23761374	.	+	.	source_transcript=hg002_chrY_paternal_527.2;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.2;transcript_id=HG003_chrY_T0000690;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000690;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=exon:HG003_chrY_T0000690:7;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23761276	23761339	.	+	1	source_transcript=hg002_chrY_paternal_527.2;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.2;transcript_id=HG003_chrY_T0000690;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000690;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=CDS:HG003_chrY_T0000690:7;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	23761337	23761339	.	+	0	source_transcript=hg002_chrY_paternal_527.2;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.2;transcript_id=HG003_chrY_T0000690;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000690;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=stop_codon:HG003_chrY_T0000690;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23761375	23765347	.	+	.	source_transcript=hg002_chrY_paternal_527.2;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.2;transcript_id=HG003_chrY_T0000690;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000690;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=intron:HG003_chrY_T0000690:7;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23765348	23767204	.	+	.	source_transcript=hg002_chrY_paternal_527.2;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.2;transcript_id=HG003_chrY_T0000690;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000690;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=exon:HG003_chrY_T0000690:8;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	23714363	23767204	100	+	.	source_transcript=hg002_chrY_paternal_527.1;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.1;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_G0000255;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=HG003_chrY_T0000691;Name=DAZ4
HG003_chrY	CAT	exon	23714363	23714672	.	+	.	source_transcript=hg002_chrY_paternal_527.1;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.1;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000691;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=exon:HG003_chrY_T0000691:0;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23714670	23714672	.	+	0	source_transcript=hg002_chrY_paternal_527.1;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.1;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000691;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=CDS:HG003_chrY_T0000691:0;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	23714670	23714672	.	+	0	source_transcript=hg002_chrY_paternal_527.1;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.1;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000691;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=start_codon:HG003_chrY_T0000691;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23714673	23721273	.	+	.	source_transcript=hg002_chrY_paternal_527.1;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.1;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000691;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=intron:HG003_chrY_T0000691:0;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23721274	23721420	.	+	.	source_transcript=hg002_chrY_paternal_527.1;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.1;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000691;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=exon:HG003_chrY_T0000691:1;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23721274	23721420	.	+	0	source_transcript=hg002_chrY_paternal_527.1;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.1;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000691;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=CDS:HG003_chrY_T0000691:1;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23721421	23721694	.	+	.	source_transcript=hg002_chrY_paternal_527.1;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.1;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000691;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=intron:HG003_chrY_T0000691:1;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23721695	23721786	.	+	.	source_transcript=hg002_chrY_paternal_527.1;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.1;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000691;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=exon:HG003_chrY_T0000691:2;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23721695	23721786	.	+	0	source_transcript=hg002_chrY_paternal_527.1;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.1;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000691;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=CDS:HG003_chrY_T0000691:2;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23721787	23722346	.	+	.	source_transcript=hg002_chrY_paternal_527.1;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.1;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000691;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=intron:HG003_chrY_T0000691:2;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23722347	23722398	.	+	.	source_transcript=hg002_chrY_paternal_527.1;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.1;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000691;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=exon:HG003_chrY_T0000691:3;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23722347	23722398	.	+	1	source_transcript=hg002_chrY_paternal_527.1;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.1;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000691;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=CDS:HG003_chrY_T0000691:3;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23722399	23722834	.	+	.	source_transcript=hg002_chrY_paternal_527.1;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.1;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000691;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=intron:HG003_chrY_T0000691:3;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23722835	23722898	.	+	.	source_transcript=hg002_chrY_paternal_527.1;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.1;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000691;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=exon:HG003_chrY_T0000691:4;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23722835	23722898	.	+	0	source_transcript=hg002_chrY_paternal_527.1;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.1;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000691;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=CDS:HG003_chrY_T0000691:4;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23722899	23722987	.	+	.	source_transcript=hg002_chrY_paternal_527.1;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.1;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000691;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=intron:HG003_chrY_T0000691:4;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23722988	23723127	.	+	.	source_transcript=hg002_chrY_paternal_527.1;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.1;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000691;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=exon:HG003_chrY_T0000691:5;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23722988	23723127	.	+	2	source_transcript=hg002_chrY_paternal_527.1;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.1;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000691;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=CDS:HG003_chrY_T0000691:5;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23723128	23724527	.	+	.	source_transcript=hg002_chrY_paternal_527.1;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.1;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000691;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=intron:HG003_chrY_T0000691:5;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23724528	23724599	.	+	.	source_transcript=hg002_chrY_paternal_527.1;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.1;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000691;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=exon:HG003_chrY_T0000691:6;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23724528	23724599	.	+	0	source_transcript=hg002_chrY_paternal_527.1;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.1;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000691;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=CDS:HG003_chrY_T0000691:6;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23724600	23726970	.	+	.	source_transcript=hg002_chrY_paternal_527.1;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.1;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000691;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=intron:HG003_chrY_T0000691:6;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23726971	23727042	.	+	.	source_transcript=hg002_chrY_paternal_527.1;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.1;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000691;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=exon:HG003_chrY_T0000691:7;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23726971	23727042	.	+	0	source_transcript=hg002_chrY_paternal_527.1;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.1;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000691;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=CDS:HG003_chrY_T0000691:7;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23727043	23729360	.	+	.	source_transcript=hg002_chrY_paternal_527.1;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.1;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000691;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=intron:HG003_chrY_T0000691:7;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23729361	23729432	.	+	.	source_transcript=hg002_chrY_paternal_527.1;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.1;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000691;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=exon:HG003_chrY_T0000691:8;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23729361	23729432	.	+	0	source_transcript=hg002_chrY_paternal_527.1;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.1;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000691;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=CDS:HG003_chrY_T0000691:8;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23729433	23731756	.	+	.	source_transcript=hg002_chrY_paternal_527.1;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.1;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000691;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=intron:HG003_chrY_T0000691:8;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23731757	23731828	.	+	.	source_transcript=hg002_chrY_paternal_527.1;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.1;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000691;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=exon:HG003_chrY_T0000691:9;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23731757	23731828	.	+	0	source_transcript=hg002_chrY_paternal_527.1;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.1;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000691;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=CDS:HG003_chrY_T0000691:9;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23731829	23743930	.	+	.	source_transcript=hg002_chrY_paternal_527.1;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.1;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000691;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=intron:HG003_chrY_T0000691:9;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23743931	23744002	.	+	.	source_transcript=hg002_chrY_paternal_527.1;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.1;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000691;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=exon:HG003_chrY_T0000691:10;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23743931	23744002	.	+	0	source_transcript=hg002_chrY_paternal_527.1;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.1;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000691;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=CDS:HG003_chrY_T0000691:10;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23744003	23755851	.	+	.	source_transcript=hg002_chrY_paternal_527.1;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.1;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000691;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=intron:HG003_chrY_T0000691:10;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23755852	23755923	.	+	.	source_transcript=hg002_chrY_paternal_527.1;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.1;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000691;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=exon:HG003_chrY_T0000691:11;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23755852	23755923	.	+	0	source_transcript=hg002_chrY_paternal_527.1;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.1;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000691;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=CDS:HG003_chrY_T0000691:11;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23755924	23756668	.	+	.	source_transcript=hg002_chrY_paternal_527.1;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.1;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000691;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=intron:HG003_chrY_T0000691:11;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23756669	23756703	.	+	.	source_transcript=hg002_chrY_paternal_527.1;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.1;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000691;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=exon:HG003_chrY_T0000691:12;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23756669	23756703	.	+	0	source_transcript=hg002_chrY_paternal_527.1;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.1;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000691;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=CDS:HG003_chrY_T0000691:12;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23756704	23761275	.	+	.	source_transcript=hg002_chrY_paternal_527.1;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.1;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000691;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=intron:HG003_chrY_T0000691:12;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23761276	23761374	.	+	.	source_transcript=hg002_chrY_paternal_527.1;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.1;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000691;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=exon:HG003_chrY_T0000691:13;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23761276	23761339	.	+	1	source_transcript=hg002_chrY_paternal_527.1;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.1;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000691;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=CDS:HG003_chrY_T0000691:13;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	23761337	23761339	.	+	0	source_transcript=hg002_chrY_paternal_527.1;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.1;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000691;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=stop_codon:HG003_chrY_T0000691;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23761375	23765347	.	+	.	source_transcript=hg002_chrY_paternal_527.1;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.1;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000691;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=intron:HG003_chrY_T0000691:13;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23765348	23767204	.	+	.	source_transcript=hg002_chrY_paternal_527.1;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.1;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000691;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=exon:HG003_chrY_T0000691:14;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	23714462	23767204	100	+	.	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_G0000255;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=HG003_chrY_T0000692;Name=DAZ4
HG003_chrY	CAT	exon	23714462	23714672	.	+	.	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=exon:HG003_chrY_T0000692:0;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23714670	23714672	.	+	0	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=CDS:HG003_chrY_T0000692:0;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	23714670	23714672	.	+	0	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=start_codon:HG003_chrY_T0000692;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23714673	23721273	.	+	.	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=intron:HG003_chrY_T0000692:0;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23721274	23721420	.	+	.	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=exon:HG003_chrY_T0000692:1;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23721274	23721420	.	+	0	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=CDS:HG003_chrY_T0000692:1;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23721421	23721694	.	+	.	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=intron:HG003_chrY_T0000692:1;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23721695	23721786	.	+	.	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=exon:HG003_chrY_T0000692:2;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23721695	23721786	.	+	0	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=CDS:HG003_chrY_T0000692:2;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23721787	23722346	.	+	.	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=intron:HG003_chrY_T0000692:2;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23722347	23722398	.	+	.	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=exon:HG003_chrY_T0000692:3;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23722347	23722398	.	+	1	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=CDS:HG003_chrY_T0000692:3;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23722399	23722834	.	+	.	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=intron:HG003_chrY_T0000692:3;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23722835	23722898	.	+	.	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=exon:HG003_chrY_T0000692:4;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23722835	23722898	.	+	0	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=CDS:HG003_chrY_T0000692:4;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23722899	23722987	.	+	.	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=intron:HG003_chrY_T0000692:4;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23722988	23723127	.	+	.	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=exon:HG003_chrY_T0000692:5;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23722988	23723127	.	+	2	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=CDS:HG003_chrY_T0000692:5;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23723128	23724527	.	+	.	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=intron:HG003_chrY_T0000692:5;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23724528	23724599	.	+	.	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=exon:HG003_chrY_T0000692:6;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23724528	23724599	.	+	0	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=CDS:HG003_chrY_T0000692:6;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23724600	23726970	.	+	.	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=intron:HG003_chrY_T0000692:6;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23726971	23727042	.	+	.	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=exon:HG003_chrY_T0000692:7;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23726971	23727042	.	+	0	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=CDS:HG003_chrY_T0000692:7;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23727043	23729360	.	+	.	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=intron:HG003_chrY_T0000692:7;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23729361	23729432	.	+	.	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=exon:HG003_chrY_T0000692:8;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23729361	23729432	.	+	0	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=CDS:HG003_chrY_T0000692:8;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23729433	23731756	.	+	.	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=intron:HG003_chrY_T0000692:8;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23731757	23731828	.	+	.	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=exon:HG003_chrY_T0000692:9;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23731757	23731828	.	+	0	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=CDS:HG003_chrY_T0000692:9;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23731829	23743930	.	+	.	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=intron:HG003_chrY_T0000692:9;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23743931	23744002	.	+	.	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=exon:HG003_chrY_T0000692:10;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23743931	23744002	.	+	0	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=CDS:HG003_chrY_T0000692:10;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23744003	23746315	.	+	.	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=intron:HG003_chrY_T0000692:10;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23746316	23746387	.	+	.	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=exon:HG003_chrY_T0000692:11;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23746316	23746387	.	+	0	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=CDS:HG003_chrY_T0000692:11;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23746388	23748699	.	+	.	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=intron:HG003_chrY_T0000692:11;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23748700	23748771	.	+	.	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=exon:HG003_chrY_T0000692:12;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23748700	23748771	.	+	0	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=CDS:HG003_chrY_T0000692:12;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23748772	23751083	.	+	.	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=intron:HG003_chrY_T0000692:12;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23751084	23751155	.	+	.	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=exon:HG003_chrY_T0000692:13;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23751084	23751155	.	+	0	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=CDS:HG003_chrY_T0000692:13;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23751156	23753467	.	+	.	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=intron:HG003_chrY_T0000692:13;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23753468	23753539	.	+	.	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=exon:HG003_chrY_T0000692:14;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23753468	23753539	.	+	0	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=CDS:HG003_chrY_T0000692:14;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23753540	23755851	.	+	.	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=intron:HG003_chrY_T0000692:14;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23755852	23755923	.	+	.	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=exon:HG003_chrY_T0000692:15;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23755852	23755923	.	+	0	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=CDS:HG003_chrY_T0000692:15;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23755924	23756668	.	+	.	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=intron:HG003_chrY_T0000692:15;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23756669	23756703	.	+	.	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=exon:HG003_chrY_T0000692:16;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23756669	23756703	.	+	0	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=CDS:HG003_chrY_T0000692:16;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23756704	23761275	.	+	.	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=intron:HG003_chrY_T0000692:16;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23761276	23761374	.	+	.	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=exon:HG003_chrY_T0000692:17;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23761276	23761339	.	+	1	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=CDS:HG003_chrY_T0000692:17;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	23761337	23761339	.	+	0	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=stop_codon:HG003_chrY_T0000692;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23761375	23765347	.	+	.	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=intron:HG003_chrY_T0000692:17;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23765348	23767204	.	+	.	source_transcript=hg002_chrY_paternal_527.3;source_transcript_name=hg002_chrY_paternal_527.3;source_gene=hg002_chrY_paternal_527;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_527;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_527.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_527.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;alternative_source_transcripts=hg002_chrY_paternal_527.3;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000692;transcript_name=hg002_chrY_paternal_527.3;gene_name=DAZ4;ID=exon:HG003_chrY_T0000692:18;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	23786819	23790156	.	+	.	source_gene_common_name=LOC105377242;source_gene=hg002_chrY_paternal_528;alternative_source_transcripts=hg002_chrY_paternal_528.2;gene_id=HG003_chrY_G0000256;gene_biotype=lncRNA;gene_name=LOC105377242;gene_sources=liftoff;ID=HG003_chrY_G0000256;Name=LOC105377242
HG003_chrY	CAT	transcript	23786819	23790156	1000	+	.	source_transcript=hg002_chrY_paternal_528.2;source_transcript_name=hg002_chrY_paternal_528.1;source_gene=hg002_chrY_paternal_528;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_528;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_528.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_528.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377242;alternative_source_transcripts=hg002_chrY_paternal_528.2;transcript_id=HG003_chrY_T0000693;gene_id=HG003_chrY_G0000256;Parent=HG003_chrY_G0000256;transcript_name=hg002_chrY_paternal_528.1;gene_name=LOC105377242;ID=HG003_chrY_T0000693;Name=LOC105377242
HG003_chrY	CAT	exon	23786819	23786997	.	+	.	source_transcript=hg002_chrY_paternal_528.2;source_transcript_name=hg002_chrY_paternal_528.1;source_gene=hg002_chrY_paternal_528;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_528;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_528.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_528.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377242;alternative_source_transcripts=hg002_chrY_paternal_528.2;transcript_id=HG003_chrY_T0000693;gene_id=HG003_chrY_G0000256;Parent=HG003_chrY_T0000693;transcript_name=hg002_chrY_paternal_528.1;gene_name=LOC105377242;ID=exon:HG003_chrY_T0000693:0;Name=LOC105377242;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23786998	23787659	.	+	.	source_transcript=hg002_chrY_paternal_528.2;source_transcript_name=hg002_chrY_paternal_528.1;source_gene=hg002_chrY_paternal_528;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_528;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_528.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_528.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377242;alternative_source_transcripts=hg002_chrY_paternal_528.2;transcript_id=HG003_chrY_T0000693;gene_id=HG003_chrY_G0000256;Parent=HG003_chrY_T0000693;transcript_name=hg002_chrY_paternal_528.1;gene_name=LOC105377242;ID=intron:HG003_chrY_T0000693:0;Name=LOC105377242;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23787660	23787697	.	+	.	source_transcript=hg002_chrY_paternal_528.2;source_transcript_name=hg002_chrY_paternal_528.1;source_gene=hg002_chrY_paternal_528;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_528;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_528.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_528.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377242;alternative_source_transcripts=hg002_chrY_paternal_528.2;transcript_id=HG003_chrY_T0000693;gene_id=HG003_chrY_G0000256;Parent=HG003_chrY_T0000693;transcript_name=hg002_chrY_paternal_528.1;gene_name=LOC105377242;ID=exon:HG003_chrY_T0000693:1;Name=LOC105377242;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23787698	23790055	.	+	.	source_transcript=hg002_chrY_paternal_528.2;source_transcript_name=hg002_chrY_paternal_528.1;source_gene=hg002_chrY_paternal_528;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_528;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_528.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_528.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377242;alternative_source_transcripts=hg002_chrY_paternal_528.2;transcript_id=HG003_chrY_T0000693;gene_id=HG003_chrY_G0000256;Parent=HG003_chrY_T0000693;transcript_name=hg002_chrY_paternal_528.1;gene_name=LOC105377242;ID=intron:HG003_chrY_T0000693:1;Name=LOC105377242;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23790056	23790156	.	+	.	source_transcript=hg002_chrY_paternal_528.2;source_transcript_name=hg002_chrY_paternal_528.1;source_gene=hg002_chrY_paternal_528;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_528;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_528.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_528.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377242;alternative_source_transcripts=hg002_chrY_paternal_528.2;transcript_id=HG003_chrY_T0000693;gene_id=HG003_chrY_G0000256;Parent=HG003_chrY_T0000693;transcript_name=hg002_chrY_paternal_528.1;gene_name=LOC105377242;ID=exon:HG003_chrY_T0000693:2;Name=LOC105377242;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	23786819	23790156	1000	+	.	source_transcript=hg002_chrY_paternal_528.1;source_transcript_name=hg002_chrY_paternal_528.1;source_gene=hg002_chrY_paternal_528;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_528;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_528.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_528.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377242;alternative_source_transcripts=hg002_chrY_paternal_528.1;transcript_id=HG003_chrY_T0000694;gene_id=HG003_chrY_G0000256;Parent=HG003_chrY_G0000256;transcript_name=hg002_chrY_paternal_528.1;gene_name=LOC105377242;ID=HG003_chrY_T0000694;Name=LOC105377242
HG003_chrY	CAT	exon	23786819	23786997	.	+	.	source_transcript=hg002_chrY_paternal_528.1;source_transcript_name=hg002_chrY_paternal_528.1;source_gene=hg002_chrY_paternal_528;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_528;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_528.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_528.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377242;alternative_source_transcripts=hg002_chrY_paternal_528.1;transcript_id=HG003_chrY_T0000694;gene_id=HG003_chrY_G0000256;Parent=HG003_chrY_T0000694;transcript_name=hg002_chrY_paternal_528.1;gene_name=LOC105377242;ID=exon:HG003_chrY_T0000694:0;Name=LOC105377242;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23786998	23787659	.	+	.	source_transcript=hg002_chrY_paternal_528.1;source_transcript_name=hg002_chrY_paternal_528.1;source_gene=hg002_chrY_paternal_528;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_528;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_528.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_528.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377242;alternative_source_transcripts=hg002_chrY_paternal_528.1;transcript_id=HG003_chrY_T0000694;gene_id=HG003_chrY_G0000256;Parent=HG003_chrY_T0000694;transcript_name=hg002_chrY_paternal_528.1;gene_name=LOC105377242;ID=intron:HG003_chrY_T0000694:0;Name=LOC105377242;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23787660	23787724	.	+	.	source_transcript=hg002_chrY_paternal_528.1;source_transcript_name=hg002_chrY_paternal_528.1;source_gene=hg002_chrY_paternal_528;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_528;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_528.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_528.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377242;alternative_source_transcripts=hg002_chrY_paternal_528.1;transcript_id=HG003_chrY_T0000694;gene_id=HG003_chrY_G0000256;Parent=HG003_chrY_T0000694;transcript_name=hg002_chrY_paternal_528.1;gene_name=LOC105377242;ID=exon:HG003_chrY_T0000694:1;Name=LOC105377242;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23787725	23790055	.	+	.	source_transcript=hg002_chrY_paternal_528.1;source_transcript_name=hg002_chrY_paternal_528.1;source_gene=hg002_chrY_paternal_528;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_528;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_528.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_528.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377242;alternative_source_transcripts=hg002_chrY_paternal_528.1;transcript_id=HG003_chrY_T0000694;gene_id=HG003_chrY_G0000256;Parent=HG003_chrY_T0000694;transcript_name=hg002_chrY_paternal_528.1;gene_name=LOC105377242;ID=intron:HG003_chrY_T0000694:1;Name=LOC105377242;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23790056	23790156	.	+	.	source_transcript=hg002_chrY_paternal_528.1;source_transcript_name=hg002_chrY_paternal_528.1;source_gene=hg002_chrY_paternal_528;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_528;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_528.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_528.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377242;alternative_source_transcripts=hg002_chrY_paternal_528.1;transcript_id=HG003_chrY_T0000694;gene_id=HG003_chrY_G0000256;Parent=HG003_chrY_T0000694;transcript_name=hg002_chrY_paternal_528.1;gene_name=LOC105377242;ID=exon:HG003_chrY_T0000694:2;Name=LOC105377242;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	23891075	23912278	.	-	.	source_gene_common_name=BPY2B;source_gene=hg002_chrY_paternal_533;alternative_source_transcripts=hg002_chrY_paternal_533.1;gene_id=HG003_chrY_G0000257;gene_biotype=protein_coding;gene_name=BPY2B;gene_sources=liftoff;ID=HG003_chrY_G0000257;Name=BPY2B
HG003_chrY	CAT	transcript	23891075	23912278	100	-	.	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_533.1;transcript_id=HG003_chrY_T0000695;gene_id=HG003_chrY_G0000257;Parent=HG003_chrY_G0000257;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=HG003_chrY_T0000695;Name=BPY2B
HG003_chrY	CAT	exon	23891075	23891396	.	-	.	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_533.1;transcript_id=HG003_chrY_T0000695;gene_id=HG003_chrY_G0000257;Parent=HG003_chrY_T0000695;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=exon:HG003_chrY_T0000695:0;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23891397	23891490	.	-	.	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_533.1;transcript_id=HG003_chrY_T0000695;gene_id=HG003_chrY_G0000257;Parent=HG003_chrY_T0000695;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=intron:HG003_chrY_T0000695:0;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23891491	23891615	.	-	.	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_533.1;transcript_id=HG003_chrY_T0000695;gene_id=HG003_chrY_G0000257;Parent=HG003_chrY_T0000695;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=exon:HG003_chrY_T0000695:1;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23891616	23898165	.	-	.	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_533.1;transcript_id=HG003_chrY_T0000695;gene_id=HG003_chrY_G0000257;Parent=HG003_chrY_T0000695;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=intron:HG003_chrY_T0000695:1;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23898166	23898290	.	-	.	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_533.1;transcript_id=HG003_chrY_T0000695;gene_id=HG003_chrY_G0000257;Parent=HG003_chrY_T0000695;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=exon:HG003_chrY_T0000695:2;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23898272	23898290	.	-	1	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_533.1;transcript_id=HG003_chrY_T0000695;gene_id=HG003_chrY_G0000257;Parent=HG003_chrY_T0000695;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=CDS:HG003_chrY_T0000695:0;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	23898272	23898274	.	-	0	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_533.1;transcript_id=HG003_chrY_T0000695;gene_id=HG003_chrY_G0000257;Parent=HG003_chrY_T0000695;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=stop_codon:HG003_chrY_T0000695;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23898291	23898982	.	-	.	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_533.1;transcript_id=HG003_chrY_T0000695;gene_id=HG003_chrY_G0000257;Parent=HG003_chrY_T0000695;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=intron:HG003_chrY_T0000695:2;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23898983	23899088	.	-	.	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_533.1;transcript_id=HG003_chrY_T0000695;gene_id=HG003_chrY_G0000257;Parent=HG003_chrY_T0000695;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=exon:HG003_chrY_T0000695:3;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23898983	23899088	.	-	2	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_533.1;transcript_id=HG003_chrY_T0000695;gene_id=HG003_chrY_G0000257;Parent=HG003_chrY_T0000695;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=CDS:HG003_chrY_T0000695:1;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23899089	23901942	.	-	.	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_533.1;transcript_id=HG003_chrY_T0000695;gene_id=HG003_chrY_G0000257;Parent=HG003_chrY_T0000695;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=intron:HG003_chrY_T0000695:3;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23901943	23902060	.	-	.	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_533.1;transcript_id=HG003_chrY_T0000695;gene_id=HG003_chrY_G0000257;Parent=HG003_chrY_T0000695;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=exon:HG003_chrY_T0000695:4;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23901943	23902060	.	-	0	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_533.1;transcript_id=HG003_chrY_T0000695;gene_id=HG003_chrY_G0000257;Parent=HG003_chrY_T0000695;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=CDS:HG003_chrY_T0000695:2;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23902061	23904119	.	-	.	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_533.1;transcript_id=HG003_chrY_T0000695;gene_id=HG003_chrY_G0000257;Parent=HG003_chrY_T0000695;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=intron:HG003_chrY_T0000695:4;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23904120	23904238	.	-	.	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_533.1;transcript_id=HG003_chrY_T0000695;gene_id=HG003_chrY_G0000257;Parent=HG003_chrY_T0000695;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=exon:HG003_chrY_T0000695:5;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23904120	23904197	.	-	0	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_533.1;transcript_id=HG003_chrY_T0000695;gene_id=HG003_chrY_G0000257;Parent=HG003_chrY_T0000695;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=CDS:HG003_chrY_T0000695:3;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	23904195	23904197	.	-	0	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_533.1;transcript_id=HG003_chrY_T0000695;gene_id=HG003_chrY_G0000257;Parent=HG003_chrY_T0000695;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=start_codon:HG003_chrY_T0000695;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23904239	23908647	.	-	.	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_533.1;transcript_id=HG003_chrY_T0000695;gene_id=HG003_chrY_G0000257;Parent=HG003_chrY_T0000695;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=intron:HG003_chrY_T0000695:5;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23908648	23908784	.	-	.	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_533.1;transcript_id=HG003_chrY_T0000695;gene_id=HG003_chrY_G0000257;Parent=HG003_chrY_T0000695;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=exon:HG003_chrY_T0000695:6;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23908785	23911849	.	-	.	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_533.1;transcript_id=HG003_chrY_T0000695;gene_id=HG003_chrY_G0000257;Parent=HG003_chrY_T0000695;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=intron:HG003_chrY_T0000695:6;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23911850	23911972	.	-	.	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_533.1;transcript_id=HG003_chrY_T0000695;gene_id=HG003_chrY_G0000257;Parent=HG003_chrY_T0000695;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=exon:HG003_chrY_T0000695:7;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23911973	23912247	.	-	.	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_533.1;transcript_id=HG003_chrY_T0000695;gene_id=HG003_chrY_G0000257;Parent=HG003_chrY_T0000695;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=intron:HG003_chrY_T0000695:7;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23912248	23912278	.	-	.	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_533.1;transcript_id=HG003_chrY_T0000695;gene_id=HG003_chrY_G0000257;Parent=HG003_chrY_T0000695;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=exon:HG003_chrY_T0000695:8;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	23923257	23960056	.	-	.	source_gene_common_name=TTTY4;source_gene=hg002_chrY_paternal_534;alternative_source_transcripts=hg002_chrY_paternal_534.1;gene_id=HG003_chrY_G0000258;gene_biotype=lncRNA;gene_name=TTTY4;gene_sources=liftoff;ID=HG003_chrY_G0000258;Name=TTTY4
HG003_chrY	CAT	transcript	23923257	23960056	1000	-	.	source_transcript=hg002_chrY_paternal_534.1;source_transcript_name=hg002_chrY_paternal_534.1;source_gene=hg002_chrY_paternal_534;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_534;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_534.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_534.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4;alternative_source_transcripts=hg002_chrY_paternal_534.1;transcript_id=HG003_chrY_T0000696;gene_id=HG003_chrY_G0000258;Parent=HG003_chrY_G0000258;transcript_name=hg002_chrY_paternal_534.1;gene_name=TTTY4;ID=HG003_chrY_T0000696;Name=TTTY4
HG003_chrY	CAT	exon	23923257	23924257	.	-	.	source_transcript=hg002_chrY_paternal_534.1;source_transcript_name=hg002_chrY_paternal_534.1;source_gene=hg002_chrY_paternal_534;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_534;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_534.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_534.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4;alternative_source_transcripts=hg002_chrY_paternal_534.1;transcript_id=HG003_chrY_T0000696;gene_id=HG003_chrY_G0000258;Parent=HG003_chrY_T0000696;transcript_name=hg002_chrY_paternal_534.1;gene_name=TTTY4;ID=exon:HG003_chrY_T0000696:0;Name=TTTY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23924258	23930907	.	-	.	source_transcript=hg002_chrY_paternal_534.1;source_transcript_name=hg002_chrY_paternal_534.1;source_gene=hg002_chrY_paternal_534;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_534;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_534.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_534.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4;alternative_source_transcripts=hg002_chrY_paternal_534.1;transcript_id=HG003_chrY_T0000696;gene_id=HG003_chrY_G0000258;Parent=HG003_chrY_T0000696;transcript_name=hg002_chrY_paternal_534.1;gene_name=TTTY4;ID=intron:HG003_chrY_T0000696:0;Name=TTTY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23930908	23931015	.	-	.	source_transcript=hg002_chrY_paternal_534.1;source_transcript_name=hg002_chrY_paternal_534.1;source_gene=hg002_chrY_paternal_534;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_534;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_534.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_534.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4;alternative_source_transcripts=hg002_chrY_paternal_534.1;transcript_id=HG003_chrY_T0000696;gene_id=HG003_chrY_G0000258;Parent=HG003_chrY_T0000696;transcript_name=hg002_chrY_paternal_534.1;gene_name=TTTY4;ID=exon:HG003_chrY_T0000696:1;Name=TTTY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23931016	23932819	.	-	.	source_transcript=hg002_chrY_paternal_534.1;source_transcript_name=hg002_chrY_paternal_534.1;source_gene=hg002_chrY_paternal_534;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_534;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_534.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_534.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4;alternative_source_transcripts=hg002_chrY_paternal_534.1;transcript_id=HG003_chrY_T0000696;gene_id=HG003_chrY_G0000258;Parent=HG003_chrY_T0000696;transcript_name=hg002_chrY_paternal_534.1;gene_name=TTTY4;ID=intron:HG003_chrY_T0000696:1;Name=TTTY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23932820	23932895	.	-	.	source_transcript=hg002_chrY_paternal_534.1;source_transcript_name=hg002_chrY_paternal_534.1;source_gene=hg002_chrY_paternal_534;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_534;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_534.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_534.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4;alternative_source_transcripts=hg002_chrY_paternal_534.1;transcript_id=HG003_chrY_T0000696;gene_id=HG003_chrY_G0000258;Parent=HG003_chrY_T0000696;transcript_name=hg002_chrY_paternal_534.1;gene_name=TTTY4;ID=exon:HG003_chrY_T0000696:2;Name=TTTY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23932896	23959895	.	-	.	source_transcript=hg002_chrY_paternal_534.1;source_transcript_name=hg002_chrY_paternal_534.1;source_gene=hg002_chrY_paternal_534;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_534;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_534.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_534.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4;alternative_source_transcripts=hg002_chrY_paternal_534.1;transcript_id=HG003_chrY_T0000696;gene_id=HG003_chrY_G0000258;Parent=HG003_chrY_T0000696;transcript_name=hg002_chrY_paternal_534.1;gene_name=TTTY4;ID=intron:HG003_chrY_T0000696:2;Name=TTTY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23959896	23960056	.	-	.	source_transcript=hg002_chrY_paternal_534.1;source_transcript_name=hg002_chrY_paternal_534.1;source_gene=hg002_chrY_paternal_534;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_534;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_534.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_534.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4;alternative_source_transcripts=hg002_chrY_paternal_534.1;transcript_id=HG003_chrY_T0000696;gene_id=HG003_chrY_G0000258;Parent=HG003_chrY_T0000696;transcript_name=hg002_chrY_paternal_534.1;gene_name=TTTY4;ID=exon:HG003_chrY_T0000696:3;Name=TTTY4;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24043800	24044932	.	-	.	source_gene_common_name=TTTY17C;source_gene=hg002_chrY_paternal_537;alternative_source_transcripts=hg002_chrY_paternal_537.1;gene_id=HG003_chrY_G0000259;gene_biotype=lncRNA;gene_name=TTTY17C;gene_sources=liftoff;ID=HG003_chrY_G0000259;Name=TTTY17C
HG003_chrY	CAT	transcript	24043800	24044932	1000	-	.	source_transcript=hg002_chrY_paternal_537.1;source_transcript_name=hg002_chrY_paternal_537.1;source_gene=hg002_chrY_paternal_537;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_537;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_537.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_537.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17C;alternative_source_transcripts=hg002_chrY_paternal_537.1;transcript_id=HG003_chrY_T0000697;gene_id=HG003_chrY_G0000259;Parent=HG003_chrY_G0000259;transcript_name=hg002_chrY_paternal_537.1;gene_name=TTTY17C;ID=HG003_chrY_T0000697;Name=TTTY17C
HG003_chrY	CAT	exon	24043800	24043905	.	-	.	source_transcript=hg002_chrY_paternal_537.1;source_transcript_name=hg002_chrY_paternal_537.1;source_gene=hg002_chrY_paternal_537;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_537;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_537.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_537.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17C;alternative_source_transcripts=hg002_chrY_paternal_537.1;transcript_id=HG003_chrY_T0000697;gene_id=HG003_chrY_G0000259;Parent=HG003_chrY_T0000697;transcript_name=hg002_chrY_paternal_537.1;gene_name=TTTY17C;ID=exon:HG003_chrY_T0000697:0;Name=TTTY17C;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24043906	24044872	.	-	.	source_transcript=hg002_chrY_paternal_537.1;source_transcript_name=hg002_chrY_paternal_537.1;source_gene=hg002_chrY_paternal_537;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_537;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_537.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_537.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17C;alternative_source_transcripts=hg002_chrY_paternal_537.1;transcript_id=HG003_chrY_T0000697;gene_id=HG003_chrY_G0000259;Parent=HG003_chrY_T0000697;transcript_name=hg002_chrY_paternal_537.1;gene_name=TTTY17C;ID=intron:HG003_chrY_T0000697:0;Name=TTTY17C;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24044873	24044932	.	-	.	source_transcript=hg002_chrY_paternal_537.1;source_transcript_name=hg002_chrY_paternal_537.1;source_gene=hg002_chrY_paternal_537;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_537;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_537.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_537.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17C;alternative_source_transcripts=hg002_chrY_paternal_537.1;transcript_id=HG003_chrY_T0000697;gene_id=HG003_chrY_G0000259;Parent=HG003_chrY_T0000697;transcript_name=hg002_chrY_paternal_537.1;gene_name=TTTY17C;ID=exon:HG003_chrY_T0000697:1;Name=TTTY17C;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24097196	24110301	.	-	.	source_gene_common_name=LOC107987350;source_gene=hg002_chrY_paternal_538;alternative_source_transcripts=hg002_chrY_paternal_538.2;gene_id=HG003_chrY_G0000260;gene_biotype=lncRNA;gene_name=LOC107987350;gene_sources=liftoff;ID=HG003_chrY_G0000260;Name=LOC107987350
HG003_chrY	CAT	transcript	24097196	24110301	1000	-	.	source_transcript=hg002_chrY_paternal_538.2;source_transcript_name=hg002_chrY_paternal_538.1;source_gene=hg002_chrY_paternal_538;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_538;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_538.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_538.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;alternative_source_transcripts=hg002_chrY_paternal_538.2;transcript_id=HG003_chrY_T0000698;gene_id=HG003_chrY_G0000260;Parent=HG003_chrY_G0000260;transcript_name=hg002_chrY_paternal_538.1;gene_name=LOC107987350;ID=HG003_chrY_T0000698;Name=LOC107987350
HG003_chrY	CAT	exon	24097196	24101069	.	-	.	source_transcript=hg002_chrY_paternal_538.2;source_transcript_name=hg002_chrY_paternal_538.1;source_gene=hg002_chrY_paternal_538;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_538;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_538.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_538.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;alternative_source_transcripts=hg002_chrY_paternal_538.2;transcript_id=HG003_chrY_T0000698;gene_id=HG003_chrY_G0000260;Parent=HG003_chrY_T0000698;transcript_name=hg002_chrY_paternal_538.1;gene_name=LOC107987350;ID=exon:HG003_chrY_T0000698:0;Name=LOC107987350;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24101070	24101710	.	-	.	source_transcript=hg002_chrY_paternal_538.2;source_transcript_name=hg002_chrY_paternal_538.1;source_gene=hg002_chrY_paternal_538;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_538;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_538.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_538.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;alternative_source_transcripts=hg002_chrY_paternal_538.2;transcript_id=HG003_chrY_T0000698;gene_id=HG003_chrY_G0000260;Parent=HG003_chrY_T0000698;transcript_name=hg002_chrY_paternal_538.1;gene_name=LOC107987350;ID=intron:HG003_chrY_T0000698:0;Name=LOC107987350;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24101711	24104343	.	-	.	source_transcript=hg002_chrY_paternal_538.2;source_transcript_name=hg002_chrY_paternal_538.1;source_gene=hg002_chrY_paternal_538;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_538;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_538.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_538.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;alternative_source_transcripts=hg002_chrY_paternal_538.2;transcript_id=HG003_chrY_T0000698;gene_id=HG003_chrY_G0000260;Parent=HG003_chrY_T0000698;transcript_name=hg002_chrY_paternal_538.1;gene_name=LOC107987350;ID=exon:HG003_chrY_T0000698:1;Name=LOC107987350;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24104344	24109845	.	-	.	source_transcript=hg002_chrY_paternal_538.2;source_transcript_name=hg002_chrY_paternal_538.1;source_gene=hg002_chrY_paternal_538;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_538;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_538.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_538.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;alternative_source_transcripts=hg002_chrY_paternal_538.2;transcript_id=HG003_chrY_T0000698;gene_id=HG003_chrY_G0000260;Parent=HG003_chrY_T0000698;transcript_name=hg002_chrY_paternal_538.1;gene_name=LOC107987350;ID=intron:HG003_chrY_T0000698:1;Name=LOC107987350;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24109846	24110301	.	-	.	source_transcript=hg002_chrY_paternal_538.2;source_transcript_name=hg002_chrY_paternal_538.1;source_gene=hg002_chrY_paternal_538;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_538;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_538.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_538.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;alternative_source_transcripts=hg002_chrY_paternal_538.2;transcript_id=HG003_chrY_T0000698;gene_id=HG003_chrY_G0000260;Parent=HG003_chrY_T0000698;transcript_name=hg002_chrY_paternal_538.1;gene_name=LOC107987350;ID=exon:HG003_chrY_T0000698:2;Name=LOC107987350;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	24097196	24110301	1000	-	.	source_transcript=hg002_chrY_paternal_538.1;source_transcript_name=hg002_chrY_paternal_538.1;source_gene=hg002_chrY_paternal_538;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_538;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_538.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_538.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;alternative_source_transcripts=hg002_chrY_paternal_538.1;transcript_id=HG003_chrY_T0000699;gene_id=HG003_chrY_G0000260;Parent=HG003_chrY_G0000260;transcript_name=hg002_chrY_paternal_538.1;gene_name=LOC107987350;ID=HG003_chrY_T0000699;Name=LOC107987350
HG003_chrY	CAT	exon	24097196	24101069	.	-	.	source_transcript=hg002_chrY_paternal_538.1;source_transcript_name=hg002_chrY_paternal_538.1;source_gene=hg002_chrY_paternal_538;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_538;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_538.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_538.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;alternative_source_transcripts=hg002_chrY_paternal_538.1;transcript_id=HG003_chrY_T0000699;gene_id=HG003_chrY_G0000260;Parent=HG003_chrY_T0000699;transcript_name=hg002_chrY_paternal_538.1;gene_name=LOC107987350;ID=exon:HG003_chrY_T0000699:0;Name=LOC107987350;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24101070	24101710	.	-	.	source_transcript=hg002_chrY_paternal_538.1;source_transcript_name=hg002_chrY_paternal_538.1;source_gene=hg002_chrY_paternal_538;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_538;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_538.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_538.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;alternative_source_transcripts=hg002_chrY_paternal_538.1;transcript_id=HG003_chrY_T0000699;gene_id=HG003_chrY_G0000260;Parent=HG003_chrY_T0000699;transcript_name=hg002_chrY_paternal_538.1;gene_name=LOC107987350;ID=intron:HG003_chrY_T0000699:0;Name=LOC107987350;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24101711	24103875	.	-	.	source_transcript=hg002_chrY_paternal_538.1;source_transcript_name=hg002_chrY_paternal_538.1;source_gene=hg002_chrY_paternal_538;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_538;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_538.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_538.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;alternative_source_transcripts=hg002_chrY_paternal_538.1;transcript_id=HG003_chrY_T0000699;gene_id=HG003_chrY_G0000260;Parent=HG003_chrY_T0000699;transcript_name=hg002_chrY_paternal_538.1;gene_name=LOC107987350;ID=exon:HG003_chrY_T0000699:1;Name=LOC107987350;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24103876	24109845	.	-	.	source_transcript=hg002_chrY_paternal_538.1;source_transcript_name=hg002_chrY_paternal_538.1;source_gene=hg002_chrY_paternal_538;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_538;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_538.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_538.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;alternative_source_transcripts=hg002_chrY_paternal_538.1;transcript_id=HG003_chrY_T0000699;gene_id=HG003_chrY_G0000260;Parent=HG003_chrY_T0000699;transcript_name=hg002_chrY_paternal_538.1;gene_name=LOC107987350;ID=intron:HG003_chrY_T0000699:1;Name=LOC107987350;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24109846	24110301	.	-	.	source_transcript=hg002_chrY_paternal_538.1;source_transcript_name=hg002_chrY_paternal_538.1;source_gene=hg002_chrY_paternal_538;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_538;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_538.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_538.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;alternative_source_transcripts=hg002_chrY_paternal_538.1;transcript_id=HG003_chrY_T0000699;gene_id=HG003_chrY_G0000260;Parent=HG003_chrY_T0000699;transcript_name=hg002_chrY_paternal_538.1;gene_name=LOC107987350;ID=exon:HG003_chrY_T0000699:2;Name=LOC107987350;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24199082	24200715	.	-	.	source_gene_common_name=LOC101928626;source_gene=hg002_chrY_paternal_541;alternative_source_transcripts=hg002_chrY_paternal_541.1;gene_id=HG003_chrY_G0000261;gene_biotype=lncRNA;gene_name=LOC101928626;gene_sources=liftoff;ID=HG003_chrY_G0000261;Name=LOC101928626
HG003_chrY	CAT	transcript	24199082	24200715	1000	-	.	source_transcript=hg002_chrY_paternal_541.1;source_transcript_name=hg002_chrY_paternal_541.1;source_gene=hg002_chrY_paternal_541;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_541;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_541.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_541.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928626;alternative_source_transcripts=hg002_chrY_paternal_541.1;transcript_id=HG003_chrY_T0000700;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_G0000261;transcript_name=hg002_chrY_paternal_541.1;gene_name=LOC101928626;ID=HG003_chrY_T0000700;Name=LOC101928626
HG003_chrY	CAT	exon	24199082	24199525	.	-	.	source_transcript=hg002_chrY_paternal_541.1;source_transcript_name=hg002_chrY_paternal_541.1;source_gene=hg002_chrY_paternal_541;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_541;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_541.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_541.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928626;alternative_source_transcripts=hg002_chrY_paternal_541.1;transcript_id=HG003_chrY_T0000700;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000700;transcript_name=hg002_chrY_paternal_541.1;gene_name=LOC101928626;ID=exon:HG003_chrY_T0000700:0;Name=LOC101928626;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24199526	24199662	.	-	.	source_transcript=hg002_chrY_paternal_541.1;source_transcript_name=hg002_chrY_paternal_541.1;source_gene=hg002_chrY_paternal_541;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_541;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_541.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_541.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928626;alternative_source_transcripts=hg002_chrY_paternal_541.1;transcript_id=HG003_chrY_T0000700;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000700;transcript_name=hg002_chrY_paternal_541.1;gene_name=LOC101928626;ID=intron:HG003_chrY_T0000700:0;Name=LOC101928626;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24199663	24199929	.	-	.	source_transcript=hg002_chrY_paternal_541.1;source_transcript_name=hg002_chrY_paternal_541.1;source_gene=hg002_chrY_paternal_541;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_541;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_541.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_541.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928626;alternative_source_transcripts=hg002_chrY_paternal_541.1;transcript_id=HG003_chrY_T0000700;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000700;transcript_name=hg002_chrY_paternal_541.1;gene_name=LOC101928626;ID=exon:HG003_chrY_T0000700:1;Name=LOC101928626;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24199930	24200624	.	-	.	source_transcript=hg002_chrY_paternal_541.1;source_transcript_name=hg002_chrY_paternal_541.1;source_gene=hg002_chrY_paternal_541;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_541;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_541.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_541.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928626;alternative_source_transcripts=hg002_chrY_paternal_541.1;transcript_id=HG003_chrY_T0000700;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000700;transcript_name=hg002_chrY_paternal_541.1;gene_name=LOC101928626;ID=intron:HG003_chrY_T0000700:1;Name=LOC101928626;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24200625	24200715	.	-	.	source_transcript=hg002_chrY_paternal_541.1;source_transcript_name=hg002_chrY_paternal_541.1;source_gene=hg002_chrY_paternal_541;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_541;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_541.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_541.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928626;alternative_source_transcripts=hg002_chrY_paternal_541.1;transcript_id=HG003_chrY_T0000700;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000700;transcript_name=hg002_chrY_paternal_541.1;gene_name=LOC101928626;ID=exon:HG003_chrY_T0000700:2;Name=LOC101928626;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24208597	24219597	.	+	.	source_gene_common_name=LOC107987240;source_gene=hg002_chrY_paternal_542;alternative_source_transcripts=hg002_chrY_paternal_542.1;gene_id=HG003_chrY_G0000262;gene_biotype=lncRNA;gene_name=LOC107987240;gene_sources=liftoff;ID=HG003_chrY_G0000262;Name=LOC107987240
HG003_chrY	CAT	transcript	24208597	24219597	1000	+	.	source_transcript=hg002_chrY_paternal_542.1;source_transcript_name=hg002_chrY_paternal_542.1;source_gene=hg002_chrY_paternal_542;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_542;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_542.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_542.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987240;alternative_source_transcripts=hg002_chrY_paternal_542.1;transcript_id=HG003_chrY_T0000701;gene_id=HG003_chrY_G0000262;Parent=HG003_chrY_G0000262;transcript_name=hg002_chrY_paternal_542.1;gene_name=LOC107987240;ID=HG003_chrY_T0000701;Name=LOC107987240
HG003_chrY	CAT	exon	24208597	24208828	.	+	.	source_transcript=hg002_chrY_paternal_542.1;source_transcript_name=hg002_chrY_paternal_542.1;source_gene=hg002_chrY_paternal_542;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_542;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_542.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_542.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987240;alternative_source_transcripts=hg002_chrY_paternal_542.1;transcript_id=HG003_chrY_T0000701;gene_id=HG003_chrY_G0000262;Parent=HG003_chrY_T0000701;transcript_name=hg002_chrY_paternal_542.1;gene_name=LOC107987240;ID=exon:HG003_chrY_T0000701:0;Name=LOC107987240;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24208829	24218623	.	+	.	source_transcript=hg002_chrY_paternal_542.1;source_transcript_name=hg002_chrY_paternal_542.1;source_gene=hg002_chrY_paternal_542;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_542;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_542.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_542.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987240;alternative_source_transcripts=hg002_chrY_paternal_542.1;transcript_id=HG003_chrY_T0000701;gene_id=HG003_chrY_G0000262;Parent=HG003_chrY_T0000701;transcript_name=hg002_chrY_paternal_542.1;gene_name=LOC107987240;ID=intron:HG003_chrY_T0000701:0;Name=LOC107987240;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24218624	24218730	.	+	.	source_transcript=hg002_chrY_paternal_542.1;source_transcript_name=hg002_chrY_paternal_542.1;source_gene=hg002_chrY_paternal_542;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_542;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_542.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_542.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987240;alternative_source_transcripts=hg002_chrY_paternal_542.1;transcript_id=HG003_chrY_T0000701;gene_id=HG003_chrY_G0000262;Parent=HG003_chrY_T0000701;transcript_name=hg002_chrY_paternal_542.1;gene_name=LOC107987240;ID=exon:HG003_chrY_T0000701:1;Name=LOC107987240;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24218731	24218939	.	+	.	source_transcript=hg002_chrY_paternal_542.1;source_transcript_name=hg002_chrY_paternal_542.1;source_gene=hg002_chrY_paternal_542;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_542;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_542.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_542.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987240;alternative_source_transcripts=hg002_chrY_paternal_542.1;transcript_id=HG003_chrY_T0000701;gene_id=HG003_chrY_G0000262;Parent=HG003_chrY_T0000701;transcript_name=hg002_chrY_paternal_542.1;gene_name=LOC107987240;ID=intron:HG003_chrY_T0000701:1;Name=LOC107987240;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24218940	24219597	.	+	.	source_transcript=hg002_chrY_paternal_542.1;source_transcript_name=hg002_chrY_paternal_542.1;source_gene=hg002_chrY_paternal_542;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_542;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_542.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_542.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987240;alternative_source_transcripts=hg002_chrY_paternal_542.1;transcript_id=HG003_chrY_T0000701;gene_id=HG003_chrY_G0000262;Parent=HG003_chrY_T0000701;transcript_name=hg002_chrY_paternal_542.1;gene_name=LOC107987240;ID=exon:HG003_chrY_T0000701:2;Name=LOC107987240;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24315475	24320340	.	+	.	source_gene_common_name=GOLGA2P2Y;source_gene=hg002_chrY_paternal_550;alternative_source_transcripts=hg002_chrY_paternal_550.1;gene_id=HG003_chrY_G0000263;gene_biotype=transcribed_pseudogene;gene_name=GOLGA2P2Y;gene_sources=liftoff;ID=HG003_chrY_G0000263;Name=GOLGA2P2Y
HG003_chrY	CAT	transcript	24315475	24320340	1000	+	.	source_transcript=hg002_chrY_paternal_550.1;source_transcript_name=hg002_chrY_paternal_550.1;source_gene=hg002_chrY_paternal_550;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_550;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_550.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_550.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;alternative_source_transcripts=hg002_chrY_paternal_550.1;transcript_id=HG003_chrY_T0000702;gene_id=HG003_chrY_G0000263;Parent=HG003_chrY_G0000263;transcript_name=hg002_chrY_paternal_550.1;gene_name=GOLGA2P2Y;ID=HG003_chrY_T0000702;Name=GOLGA2P2Y
HG003_chrY	CAT	exon	24315475	24315517	.	+	.	source_transcript=hg002_chrY_paternal_550.1;source_transcript_name=hg002_chrY_paternal_550.1;source_gene=hg002_chrY_paternal_550;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_550;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_550.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_550.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;alternative_source_transcripts=hg002_chrY_paternal_550.1;transcript_id=HG003_chrY_T0000702;gene_id=HG003_chrY_G0000263;Parent=HG003_chrY_T0000702;transcript_name=hg002_chrY_paternal_550.1;gene_name=GOLGA2P2Y;ID=exon:HG003_chrY_T0000702:0;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24315518	24315703	.	+	.	source_transcript=hg002_chrY_paternal_550.1;source_transcript_name=hg002_chrY_paternal_550.1;source_gene=hg002_chrY_paternal_550;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_550;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_550.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_550.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;alternative_source_transcripts=hg002_chrY_paternal_550.1;transcript_id=HG003_chrY_T0000702;gene_id=HG003_chrY_G0000263;Parent=HG003_chrY_T0000702;transcript_name=hg002_chrY_paternal_550.1;gene_name=GOLGA2P2Y;ID=intron:HG003_chrY_T0000702:0;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24315704	24315782	.	+	.	source_transcript=hg002_chrY_paternal_550.1;source_transcript_name=hg002_chrY_paternal_550.1;source_gene=hg002_chrY_paternal_550;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_550;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_550.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_550.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;alternative_source_transcripts=hg002_chrY_paternal_550.1;transcript_id=HG003_chrY_T0000702;gene_id=HG003_chrY_G0000263;Parent=HG003_chrY_T0000702;transcript_name=hg002_chrY_paternal_550.1;gene_name=GOLGA2P2Y;ID=exon:HG003_chrY_T0000702:1;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24315783	24316902	.	+	.	source_transcript=hg002_chrY_paternal_550.1;source_transcript_name=hg002_chrY_paternal_550.1;source_gene=hg002_chrY_paternal_550;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_550;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_550.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_550.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;alternative_source_transcripts=hg002_chrY_paternal_550.1;transcript_id=HG003_chrY_T0000702;gene_id=HG003_chrY_G0000263;Parent=HG003_chrY_T0000702;transcript_name=hg002_chrY_paternal_550.1;gene_name=GOLGA2P2Y;ID=intron:HG003_chrY_T0000702:1;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24316903	24317254	.	+	.	source_transcript=hg002_chrY_paternal_550.1;source_transcript_name=hg002_chrY_paternal_550.1;source_gene=hg002_chrY_paternal_550;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_550;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_550.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_550.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;alternative_source_transcripts=hg002_chrY_paternal_550.1;transcript_id=HG003_chrY_T0000702;gene_id=HG003_chrY_G0000263;Parent=HG003_chrY_T0000702;transcript_name=hg002_chrY_paternal_550.1;gene_name=GOLGA2P2Y;ID=exon:HG003_chrY_T0000702:2;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24317255	24317550	.	+	.	source_transcript=hg002_chrY_paternal_550.1;source_transcript_name=hg002_chrY_paternal_550.1;source_gene=hg002_chrY_paternal_550;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_550;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_550.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_550.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;alternative_source_transcripts=hg002_chrY_paternal_550.1;transcript_id=HG003_chrY_T0000702;gene_id=HG003_chrY_G0000263;Parent=HG003_chrY_T0000702;transcript_name=hg002_chrY_paternal_550.1;gene_name=GOLGA2P2Y;ID=intron:HG003_chrY_T0000702:2;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24317551	24317608	.	+	.	source_transcript=hg002_chrY_paternal_550.1;source_transcript_name=hg002_chrY_paternal_550.1;source_gene=hg002_chrY_paternal_550;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_550;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_550.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_550.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;alternative_source_transcripts=hg002_chrY_paternal_550.1;transcript_id=HG003_chrY_T0000702;gene_id=HG003_chrY_G0000263;Parent=HG003_chrY_T0000702;transcript_name=hg002_chrY_paternal_550.1;gene_name=GOLGA2P2Y;ID=exon:HG003_chrY_T0000702:3;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24317609	24318964	.	+	.	source_transcript=hg002_chrY_paternal_550.1;source_transcript_name=hg002_chrY_paternal_550.1;source_gene=hg002_chrY_paternal_550;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_550;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_550.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_550.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;alternative_source_transcripts=hg002_chrY_paternal_550.1;transcript_id=HG003_chrY_T0000702;gene_id=HG003_chrY_G0000263;Parent=HG003_chrY_T0000702;transcript_name=hg002_chrY_paternal_550.1;gene_name=GOLGA2P2Y;ID=intron:HG003_chrY_T0000702:3;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24318965	24319039	.	+	.	source_transcript=hg002_chrY_paternal_550.1;source_transcript_name=hg002_chrY_paternal_550.1;source_gene=hg002_chrY_paternal_550;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_550;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_550.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_550.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;alternative_source_transcripts=hg002_chrY_paternal_550.1;transcript_id=HG003_chrY_T0000702;gene_id=HG003_chrY_G0000263;Parent=HG003_chrY_T0000702;transcript_name=hg002_chrY_paternal_550.1;gene_name=GOLGA2P2Y;ID=exon:HG003_chrY_T0000702:4;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24319040	24319459	.	+	.	source_transcript=hg002_chrY_paternal_550.1;source_transcript_name=hg002_chrY_paternal_550.1;source_gene=hg002_chrY_paternal_550;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_550;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_550.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_550.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;alternative_source_transcripts=hg002_chrY_paternal_550.1;transcript_id=HG003_chrY_T0000702;gene_id=HG003_chrY_G0000263;Parent=HG003_chrY_T0000702;transcript_name=hg002_chrY_paternal_550.1;gene_name=GOLGA2P2Y;ID=intron:HG003_chrY_T0000702:4;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24319460	24319548	.	+	.	source_transcript=hg002_chrY_paternal_550.1;source_transcript_name=hg002_chrY_paternal_550.1;source_gene=hg002_chrY_paternal_550;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_550;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_550.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_550.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;alternative_source_transcripts=hg002_chrY_paternal_550.1;transcript_id=HG003_chrY_T0000702;gene_id=HG003_chrY_G0000263;Parent=HG003_chrY_T0000702;transcript_name=hg002_chrY_paternal_550.1;gene_name=GOLGA2P2Y;ID=exon:HG003_chrY_T0000702:5;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24319549	24319803	.	+	.	source_transcript=hg002_chrY_paternal_550.1;source_transcript_name=hg002_chrY_paternal_550.1;source_gene=hg002_chrY_paternal_550;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_550;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_550.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_550.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;alternative_source_transcripts=hg002_chrY_paternal_550.1;transcript_id=HG003_chrY_T0000702;gene_id=HG003_chrY_G0000263;Parent=HG003_chrY_T0000702;transcript_name=hg002_chrY_paternal_550.1;gene_name=GOLGA2P2Y;ID=intron:HG003_chrY_T0000702:5;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24319804	24319992	.	+	.	source_transcript=hg002_chrY_paternal_550.1;source_transcript_name=hg002_chrY_paternal_550.1;source_gene=hg002_chrY_paternal_550;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_550;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_550.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_550.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;alternative_source_transcripts=hg002_chrY_paternal_550.1;transcript_id=HG003_chrY_T0000702;gene_id=HG003_chrY_G0000263;Parent=HG003_chrY_T0000702;transcript_name=hg002_chrY_paternal_550.1;gene_name=GOLGA2P2Y;ID=exon:HG003_chrY_T0000702:6;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24319993	24320081	.	+	.	source_transcript=hg002_chrY_paternal_550.1;source_transcript_name=hg002_chrY_paternal_550.1;source_gene=hg002_chrY_paternal_550;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_550;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_550.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_550.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;alternative_source_transcripts=hg002_chrY_paternal_550.1;transcript_id=HG003_chrY_T0000702;gene_id=HG003_chrY_G0000263;Parent=HG003_chrY_T0000702;transcript_name=hg002_chrY_paternal_550.1;gene_name=GOLGA2P2Y;ID=intron:HG003_chrY_T0000702:6;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24320082	24320174	.	+	.	source_transcript=hg002_chrY_paternal_550.1;source_transcript_name=hg002_chrY_paternal_550.1;source_gene=hg002_chrY_paternal_550;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_550;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_550.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_550.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;alternative_source_transcripts=hg002_chrY_paternal_550.1;transcript_id=HG003_chrY_T0000702;gene_id=HG003_chrY_G0000263;Parent=HG003_chrY_T0000702;transcript_name=hg002_chrY_paternal_550.1;gene_name=GOLGA2P2Y;ID=exon:HG003_chrY_T0000702:7;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24320175	24320256	.	+	.	source_transcript=hg002_chrY_paternal_550.1;source_transcript_name=hg002_chrY_paternal_550.1;source_gene=hg002_chrY_paternal_550;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_550;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_550.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_550.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;alternative_source_transcripts=hg002_chrY_paternal_550.1;transcript_id=HG003_chrY_T0000702;gene_id=HG003_chrY_G0000263;Parent=HG003_chrY_T0000702;transcript_name=hg002_chrY_paternal_550.1;gene_name=GOLGA2P2Y;ID=intron:HG003_chrY_T0000702:7;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24320257	24320340	.	+	.	source_transcript=hg002_chrY_paternal_550.1;source_transcript_name=hg002_chrY_paternal_550.1;source_gene=hg002_chrY_paternal_550;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_550;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_550.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_550.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;alternative_source_transcripts=hg002_chrY_paternal_550.1;transcript_id=HG003_chrY_T0000702;gene_id=HG003_chrY_G0000263;Parent=HG003_chrY_T0000702;transcript_name=hg002_chrY_paternal_550.1;gene_name=GOLGA2P2Y;ID=exon:HG003_chrY_T0000702:8;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24322339	24323869	.	-	.	source_gene_common_name=LOC102724034;source_gene=hg002_chrY_paternal_552;alternative_source_transcripts=hg002_chrY_paternal_552.1;gene_id=HG003_chrY_G0000264;gene_biotype=lncRNA;gene_name=LOC102724034;gene_sources=liftoff;ID=HG003_chrY_G0000264;Name=LOC102724034
HG003_chrY	CAT	transcript	24322339	24323869	1000	-	.	source_transcript=hg002_chrY_paternal_552.1;source_transcript_name=hg002_chrY_paternal_552.1;source_gene=hg002_chrY_paternal_552;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_552;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_552.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_552.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724034;alternative_source_transcripts=hg002_chrY_paternal_552.1;transcript_id=HG003_chrY_T0000703;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_G0000264;transcript_name=hg002_chrY_paternal_552.1;gene_name=LOC102724034;ID=HG003_chrY_T0000703;Name=LOC102724034
HG003_chrY	CAT	exon	24322339	24322762	.	-	.	source_transcript=hg002_chrY_paternal_552.1;source_transcript_name=hg002_chrY_paternal_552.1;source_gene=hg002_chrY_paternal_552;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_552;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_552.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_552.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724034;alternative_source_transcripts=hg002_chrY_paternal_552.1;transcript_id=HG003_chrY_T0000703;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000703;transcript_name=hg002_chrY_paternal_552.1;gene_name=LOC102724034;ID=exon:HG003_chrY_T0000703:0;Name=LOC102724034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24322763	24323030	.	-	.	source_transcript=hg002_chrY_paternal_552.1;source_transcript_name=hg002_chrY_paternal_552.1;source_gene=hg002_chrY_paternal_552;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_552;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_552.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_552.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724034;alternative_source_transcripts=hg002_chrY_paternal_552.1;transcript_id=HG003_chrY_T0000703;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000703;transcript_name=hg002_chrY_paternal_552.1;gene_name=LOC102724034;ID=intron:HG003_chrY_T0000703:0;Name=LOC102724034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24323031	24323155	.	-	.	source_transcript=hg002_chrY_paternal_552.1;source_transcript_name=hg002_chrY_paternal_552.1;source_gene=hg002_chrY_paternal_552;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_552;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_552.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_552.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724034;alternative_source_transcripts=hg002_chrY_paternal_552.1;transcript_id=HG003_chrY_T0000703;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000703;transcript_name=hg002_chrY_paternal_552.1;gene_name=LOC102724034;ID=exon:HG003_chrY_T0000703:1;Name=LOC102724034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24323156	24323843	.	-	.	source_transcript=hg002_chrY_paternal_552.1;source_transcript_name=hg002_chrY_paternal_552.1;source_gene=hg002_chrY_paternal_552;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_552;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_552.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_552.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724034;alternative_source_transcripts=hg002_chrY_paternal_552.1;transcript_id=HG003_chrY_T0000703;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000703;transcript_name=hg002_chrY_paternal_552.1;gene_name=LOC102724034;ID=intron:HG003_chrY_T0000703:1;Name=LOC102724034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24323844	24323869	.	-	.	source_transcript=hg002_chrY_paternal_552.1;source_transcript_name=hg002_chrY_paternal_552.1;source_gene=hg002_chrY_paternal_552;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_552;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_552.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_552.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724034;alternative_source_transcripts=hg002_chrY_paternal_552.1;transcript_id=HG003_chrY_T0000703;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000703;transcript_name=hg002_chrY_paternal_552.1;gene_name=LOC102724034;ID=exon:HG003_chrY_T0000703:2;Name=LOC102724034;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24343070	24346867	.	+	.	source_gene_common_name=CSPG4P1Y;source_gene=hg002_chrY_paternal_556;alternative_source_transcripts=hg002_chrY_paternal_556.1;gene_id=HG003_chrY_G0000265;gene_biotype=transcribed_pseudogene;gene_name=CSPG4P1Y;gene_sources=liftoff;ID=HG003_chrY_G0000265;Name=CSPG4P1Y
HG003_chrY	CAT	transcript	24343070	24346867	1000	+	.	source_transcript=hg002_chrY_paternal_556.1;source_transcript_name=hg002_chrY_paternal_556.1;source_gene=hg002_chrY_paternal_556;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_556;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_556.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_556.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSPG4P1Y;alternative_source_transcripts=hg002_chrY_paternal_556.1;transcript_id=HG003_chrY_T0000704;gene_id=HG003_chrY_G0000265;Parent=HG003_chrY_G0000265;transcript_name=hg002_chrY_paternal_556.1;gene_name=CSPG4P1Y;ID=HG003_chrY_T0000704;Name=CSPG4P1Y
HG003_chrY	CAT	exon	24343070	24343792	.	+	.	source_transcript=hg002_chrY_paternal_556.1;source_transcript_name=hg002_chrY_paternal_556.1;source_gene=hg002_chrY_paternal_556;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_556;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_556.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_556.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSPG4P1Y;alternative_source_transcripts=hg002_chrY_paternal_556.1;transcript_id=HG003_chrY_T0000704;gene_id=HG003_chrY_G0000265;Parent=HG003_chrY_T0000704;transcript_name=hg002_chrY_paternal_556.1;gene_name=CSPG4P1Y;ID=exon:HG003_chrY_T0000704:0;Name=CSPG4P1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24343793	24346795	.	+	.	source_transcript=hg002_chrY_paternal_556.1;source_transcript_name=hg002_chrY_paternal_556.1;source_gene=hg002_chrY_paternal_556;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_556;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_556.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_556.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSPG4P1Y;alternative_source_transcripts=hg002_chrY_paternal_556.1;transcript_id=HG003_chrY_T0000704;gene_id=HG003_chrY_G0000265;Parent=HG003_chrY_T0000704;transcript_name=hg002_chrY_paternal_556.1;gene_name=CSPG4P1Y;ID=intron:HG003_chrY_T0000704:0;Name=CSPG4P1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24346796	24346867	.	+	.	source_transcript=hg002_chrY_paternal_556.1;source_transcript_name=hg002_chrY_paternal_556.1;source_gene=hg002_chrY_paternal_556;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_556;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_556.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_556.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSPG4P1Y;alternative_source_transcripts=hg002_chrY_paternal_556.1;transcript_id=HG003_chrY_T0000704;gene_id=HG003_chrY_G0000265;Parent=HG003_chrY_T0000704;transcript_name=hg002_chrY_paternal_556.1;gene_name=CSPG4P1Y;ID=exon:HG003_chrY_T0000704:1;Name=CSPG4P1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24482269	24485668	.	+	.	source_gene_common_name=CDY1B;source_gene=hg002_chrY_paternal_565;alternative_source_transcripts=hg002_chrY_paternal_565.1;gene_id=HG003_chrY_G0000266;gene_biotype=protein_coding;gene_name=CDY1B;gene_sources=liftoff;ID=HG003_chrY_G0000266;Name=CDY1B
HG003_chrY	CAT	transcript	24482269	24484495	100	+	.	source_transcript=hg002_chrY_paternal_565.1;source_transcript_name=hg002_chrY_paternal_565.4;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_565.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.1;transcript_id=HG003_chrY_T0000705;gene_id=HG003_chrY_G0000266;Parent=HG003_chrY_G0000266;transcript_name=hg002_chrY_paternal_565.4;gene_name=CDY1B;ID=HG003_chrY_T0000705;Name=CDY1B
HG003_chrY	CAT	exon	24482269	24484495	.	+	.	source_transcript=hg002_chrY_paternal_565.1;source_transcript_name=hg002_chrY_paternal_565.4;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_565.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.1;transcript_id=HG003_chrY_T0000705;gene_id=HG003_chrY_G0000266;Parent=HG003_chrY_T0000705;transcript_name=hg002_chrY_paternal_565.4;gene_name=CDY1B;ID=exon:HG003_chrY_T0000705:0;Name=CDY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	24482600	24484222	.	+	0	source_transcript=hg002_chrY_paternal_565.1;source_transcript_name=hg002_chrY_paternal_565.4;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_565.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.1;transcript_id=HG003_chrY_T0000705;gene_id=HG003_chrY_G0000266;Parent=HG003_chrY_T0000705;transcript_name=hg002_chrY_paternal_565.4;gene_name=CDY1B;ID=CDS:HG003_chrY_T0000705:0;Name=CDY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	24482600	24482602	.	+	0	source_transcript=hg002_chrY_paternal_565.1;source_transcript_name=hg002_chrY_paternal_565.4;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_565.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.1;transcript_id=HG003_chrY_T0000705;gene_id=HG003_chrY_G0000266;Parent=HG003_chrY_T0000705;transcript_name=hg002_chrY_paternal_565.4;gene_name=CDY1B;ID=start_codon:HG003_chrY_T0000705;Name=CDY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	24484220	24484222	.	+	0	source_transcript=hg002_chrY_paternal_565.1;source_transcript_name=hg002_chrY_paternal_565.4;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_565.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.1;transcript_id=HG003_chrY_T0000705;gene_id=HG003_chrY_G0000266;Parent=HG003_chrY_T0000705;transcript_name=hg002_chrY_paternal_565.4;gene_name=CDY1B;ID=stop_codon:HG003_chrY_T0000705;Name=CDY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	24482274	24485059	100	+	.	source_transcript=hg002_chrY_paternal_565.2;source_transcript_name=hg002_chrY_paternal_565.4;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_565.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.2;transcript_id=HG003_chrY_T0000706;gene_id=HG003_chrY_G0000266;Parent=HG003_chrY_G0000266;transcript_name=hg002_chrY_paternal_565.4;gene_name=CDY1B;ID=HG003_chrY_T0000706;Name=CDY1B
HG003_chrY	CAT	exon	24482274	24484191	.	+	.	source_transcript=hg002_chrY_paternal_565.2;source_transcript_name=hg002_chrY_paternal_565.4;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_565.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.2;transcript_id=HG003_chrY_T0000706;gene_id=HG003_chrY_G0000266;Parent=HG003_chrY_T0000706;transcript_name=hg002_chrY_paternal_565.4;gene_name=CDY1B;ID=exon:HG003_chrY_T0000706:0;Name=CDY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	24482600	24484191	.	+	0	source_transcript=hg002_chrY_paternal_565.2;source_transcript_name=hg002_chrY_paternal_565.4;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_565.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.2;transcript_id=HG003_chrY_T0000706;gene_id=HG003_chrY_G0000266;Parent=HG003_chrY_T0000706;transcript_name=hg002_chrY_paternal_565.4;gene_name=CDY1B;ID=CDS:HG003_chrY_T0000706:0;Name=CDY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	24482600	24482602	.	+	0	source_transcript=hg002_chrY_paternal_565.2;source_transcript_name=hg002_chrY_paternal_565.4;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_565.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.2;transcript_id=HG003_chrY_T0000706;gene_id=HG003_chrY_G0000266;Parent=HG003_chrY_T0000706;transcript_name=hg002_chrY_paternal_565.4;gene_name=CDY1B;ID=start_codon:HG003_chrY_T0000706;Name=CDY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24484192	24484611	.	+	.	source_transcript=hg002_chrY_paternal_565.2;source_transcript_name=hg002_chrY_paternal_565.4;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_565.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.2;transcript_id=HG003_chrY_T0000706;gene_id=HG003_chrY_G0000266;Parent=HG003_chrY_T0000706;transcript_name=hg002_chrY_paternal_565.4;gene_name=CDY1B;ID=intron:HG003_chrY_T0000706:0;Name=CDY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24484612	24485059	.	+	.	source_transcript=hg002_chrY_paternal_565.2;source_transcript_name=hg002_chrY_paternal_565.4;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_565.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.2;transcript_id=HG003_chrY_T0000706;gene_id=HG003_chrY_G0000266;Parent=HG003_chrY_T0000706;transcript_name=hg002_chrY_paternal_565.4;gene_name=CDY1B;ID=exon:HG003_chrY_T0000706:1;Name=CDY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	24484612	24484684	.	+	1	source_transcript=hg002_chrY_paternal_565.2;source_transcript_name=hg002_chrY_paternal_565.4;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_565.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.2;transcript_id=HG003_chrY_T0000706;gene_id=HG003_chrY_G0000266;Parent=HG003_chrY_T0000706;transcript_name=hg002_chrY_paternal_565.4;gene_name=CDY1B;ID=CDS:HG003_chrY_T0000706:1;Name=CDY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	24484682	24484684	.	+	0	source_transcript=hg002_chrY_paternal_565.2;source_transcript_name=hg002_chrY_paternal_565.4;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_565.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.2;transcript_id=HG003_chrY_T0000706;gene_id=HG003_chrY_G0000266;Parent=HG003_chrY_T0000706;transcript_name=hg002_chrY_paternal_565.4;gene_name=CDY1B;ID=stop_codon:HG003_chrY_T0000706;Name=CDY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	24482274	24485668	1000	+	.	source_transcript=hg002_chrY_paternal_565.3;source_transcript_name=hg002_chrY_paternal_565.1;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_565.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.3;transcript_id=HG003_chrY_T0000707;gene_id=HG003_chrY_G0000266;Parent=HG003_chrY_G0000266;transcript_name=hg002_chrY_paternal_565.1;gene_name=CDY1B;ID=HG003_chrY_T0000707;Name=CDY1B
HG003_chrY	CAT	exon	24482274	24484191	.	+	.	source_transcript=hg002_chrY_paternal_565.3;source_transcript_name=hg002_chrY_paternal_565.1;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_565.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.3;transcript_id=HG003_chrY_T0000707;gene_id=HG003_chrY_G0000266;Parent=HG003_chrY_T0000707;transcript_name=hg002_chrY_paternal_565.1;gene_name=CDY1B;ID=exon:HG003_chrY_T0000707:0;Name=CDY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24484192	24484611	.	+	.	source_transcript=hg002_chrY_paternal_565.3;source_transcript_name=hg002_chrY_paternal_565.1;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_565.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.3;transcript_id=HG003_chrY_T0000707;gene_id=HG003_chrY_G0000266;Parent=HG003_chrY_T0000707;transcript_name=hg002_chrY_paternal_565.1;gene_name=CDY1B;ID=intron:HG003_chrY_T0000707:0;Name=CDY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24484612	24484811	.	+	.	source_transcript=hg002_chrY_paternal_565.3;source_transcript_name=hg002_chrY_paternal_565.1;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_565.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.3;transcript_id=HG003_chrY_T0000707;gene_id=HG003_chrY_G0000266;Parent=HG003_chrY_T0000707;transcript_name=hg002_chrY_paternal_565.1;gene_name=CDY1B;ID=exon:HG003_chrY_T0000707:1;Name=CDY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24484812	24485586	.	+	.	source_transcript=hg002_chrY_paternal_565.3;source_transcript_name=hg002_chrY_paternal_565.1;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_565.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.3;transcript_id=HG003_chrY_T0000707;gene_id=HG003_chrY_G0000266;Parent=HG003_chrY_T0000707;transcript_name=hg002_chrY_paternal_565.1;gene_name=CDY1B;ID=intron:HG003_chrY_T0000707:1;Name=CDY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24485587	24485668	.	+	.	source_transcript=hg002_chrY_paternal_565.3;source_transcript_name=hg002_chrY_paternal_565.1;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_565.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.3;transcript_id=HG003_chrY_T0000707;gene_id=HG003_chrY_G0000266;Parent=HG003_chrY_T0000707;transcript_name=hg002_chrY_paternal_565.1;gene_name=CDY1B;ID=exon:HG003_chrY_T0000707:2;Name=CDY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	24482282	24485059	100	+	.	source_transcript=hg002_chrY_paternal_565.4;source_transcript_name=hg002_chrY_paternal_565.4;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_565.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.4;transcript_id=HG003_chrY_T0000708;gene_id=HG003_chrY_G0000266;Parent=HG003_chrY_G0000266;transcript_name=hg002_chrY_paternal_565.4;gene_name=CDY1B;ID=HG003_chrY_T0000708;Name=CDY1B
HG003_chrY	CAT	exon	24482282	24483991	.	+	.	source_transcript=hg002_chrY_paternal_565.4;source_transcript_name=hg002_chrY_paternal_565.4;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_565.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.4;transcript_id=HG003_chrY_T0000708;gene_id=HG003_chrY_G0000266;Parent=HG003_chrY_T0000708;transcript_name=hg002_chrY_paternal_565.4;gene_name=CDY1B;ID=exon:HG003_chrY_T0000708:0;Name=CDY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	24482600	24483991	.	+	0	source_transcript=hg002_chrY_paternal_565.4;source_transcript_name=hg002_chrY_paternal_565.4;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_565.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.4;transcript_id=HG003_chrY_T0000708;gene_id=HG003_chrY_G0000266;Parent=HG003_chrY_T0000708;transcript_name=hg002_chrY_paternal_565.4;gene_name=CDY1B;ID=CDS:HG003_chrY_T0000708:0;Name=CDY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	24482600	24482602	.	+	0	source_transcript=hg002_chrY_paternal_565.4;source_transcript_name=hg002_chrY_paternal_565.4;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_565.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.4;transcript_id=HG003_chrY_T0000708;gene_id=HG003_chrY_G0000266;Parent=HG003_chrY_T0000708;transcript_name=hg002_chrY_paternal_565.4;gene_name=CDY1B;ID=start_codon:HG003_chrY_T0000708;Name=CDY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24483992	24484611	.	+	.	source_transcript=hg002_chrY_paternal_565.4;source_transcript_name=hg002_chrY_paternal_565.4;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_565.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.4;transcript_id=HG003_chrY_T0000708;gene_id=HG003_chrY_G0000266;Parent=HG003_chrY_T0000708;transcript_name=hg002_chrY_paternal_565.4;gene_name=CDY1B;ID=intron:HG003_chrY_T0000708:0;Name=CDY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24484612	24485059	.	+	.	source_transcript=hg002_chrY_paternal_565.4;source_transcript_name=hg002_chrY_paternal_565.4;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_565.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.4;transcript_id=HG003_chrY_T0000708;gene_id=HG003_chrY_G0000266;Parent=HG003_chrY_T0000708;transcript_name=hg002_chrY_paternal_565.4;gene_name=CDY1B;ID=exon:HG003_chrY_T0000708:1;Name=CDY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	24484612	24484632	.	+	0	source_transcript=hg002_chrY_paternal_565.4;source_transcript_name=hg002_chrY_paternal_565.4;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_565.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.4;transcript_id=HG003_chrY_T0000708;gene_id=HG003_chrY_G0000266;Parent=HG003_chrY_T0000708;transcript_name=hg002_chrY_paternal_565.4;gene_name=CDY1B;ID=CDS:HG003_chrY_T0000708:1;Name=CDY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	24484630	24484632	.	+	0	source_transcript=hg002_chrY_paternal_565.4;source_transcript_name=hg002_chrY_paternal_565.4;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_565.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.4;transcript_id=HG003_chrY_T0000708;gene_id=HG003_chrY_G0000266;Parent=HG003_chrY_T0000708;transcript_name=hg002_chrY_paternal_565.4;gene_name=CDY1B;ID=stop_codon:HG003_chrY_T0000708;Name=CDY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24588663	24593558	.	+	.	source_gene_common_name=TTTY3;source_gene=hg002_chrY_paternal_572;alternative_source_transcripts=hg002_chrY_paternal_572.1;gene_id=HG003_chrY_G0000267;gene_biotype=lncRNA;gene_name=TTTY3;gene_sources=liftoff;ID=HG003_chrY_G0000267;Name=TTTY3
HG003_chrY	CAT	transcript	24588663	24593558	1000	+	.	source_transcript=hg002_chrY_paternal_572.1;source_transcript_name=hg002_chrY_paternal_572.1;source_gene=hg002_chrY_paternal_572;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_572;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_572.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_572.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY3;alternative_source_transcripts=hg002_chrY_paternal_572.1;transcript_id=HG003_chrY_T0000709;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_G0000267;transcript_name=hg002_chrY_paternal_572.1;gene_name=TTTY3;ID=HG003_chrY_T0000709;Name=TTTY3
HG003_chrY	CAT	exon	24588663	24588766	.	+	.	source_transcript=hg002_chrY_paternal_572.1;source_transcript_name=hg002_chrY_paternal_572.1;source_gene=hg002_chrY_paternal_572;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_572;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_572.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_572.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY3;alternative_source_transcripts=hg002_chrY_paternal_572.1;transcript_id=HG003_chrY_T0000709;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000709;transcript_name=hg002_chrY_paternal_572.1;gene_name=TTTY3;ID=exon:HG003_chrY_T0000709:0;Name=TTTY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24588767	24590964	.	+	.	source_transcript=hg002_chrY_paternal_572.1;source_transcript_name=hg002_chrY_paternal_572.1;source_gene=hg002_chrY_paternal_572;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_572;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_572.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_572.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY3;alternative_source_transcripts=hg002_chrY_paternal_572.1;transcript_id=HG003_chrY_T0000709;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000709;transcript_name=hg002_chrY_paternal_572.1;gene_name=TTTY3;ID=intron:HG003_chrY_T0000709:0;Name=TTTY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24590965	24591099	.	+	.	source_transcript=hg002_chrY_paternal_572.1;source_transcript_name=hg002_chrY_paternal_572.1;source_gene=hg002_chrY_paternal_572;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_572;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_572.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_572.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY3;alternative_source_transcripts=hg002_chrY_paternal_572.1;transcript_id=HG003_chrY_T0000709;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000709;transcript_name=hg002_chrY_paternal_572.1;gene_name=TTTY3;ID=exon:HG003_chrY_T0000709:1;Name=TTTY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24591100	24593453	.	+	.	source_transcript=hg002_chrY_paternal_572.1;source_transcript_name=hg002_chrY_paternal_572.1;source_gene=hg002_chrY_paternal_572;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_572;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_572.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_572.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY3;alternative_source_transcripts=hg002_chrY_paternal_572.1;transcript_id=HG003_chrY_T0000709;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000709;transcript_name=hg002_chrY_paternal_572.1;gene_name=TTTY3;ID=intron:HG003_chrY_T0000709:1;Name=TTTY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24593454	24593558	.	+	.	source_transcript=hg002_chrY_paternal_572.1;source_transcript_name=hg002_chrY_paternal_572.1;source_gene=hg002_chrY_paternal_572;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_572;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_572.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_572.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY3;alternative_source_transcripts=hg002_chrY_paternal_572.1;transcript_id=HG003_chrY_T0000709;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000709;transcript_name=hg002_chrY_paternal_572.1;gene_name=TTTY3;ID=exon:HG003_chrY_T0000709:2;Name=TTTY3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24889515	24892639	.	-	.	source_gene_common_name=LOC107987349;source_gene=hg002_chrY_paternal_593;alternative_source_transcripts=hg002_chrY_paternal_593.1;gene_id=HG003_chrY_G0000268;gene_biotype=lncRNA;gene_name=LOC107987349;gene_sources=liftoff;ID=HG003_chrY_G0000268;Name=LOC107987349
HG003_chrY	CAT	transcript	24889515	24892639	1000	-	.	source_transcript=hg002_chrY_paternal_593.1;source_transcript_name=hg002_chrY_paternal_593.1;source_gene=hg002_chrY_paternal_593;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_593;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_593.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_593.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987349;alternative_source_transcripts=hg002_chrY_paternal_593.1;transcript_id=HG003_chrY_T0000710;gene_id=HG003_chrY_G0000268;Parent=HG003_chrY_G0000268;transcript_name=hg002_chrY_paternal_593.1;gene_name=LOC107987349;ID=HG003_chrY_T0000710;Name=LOC107987349
HG003_chrY	CAT	exon	24889515	24890843	.	-	.	source_transcript=hg002_chrY_paternal_593.1;source_transcript_name=hg002_chrY_paternal_593.1;source_gene=hg002_chrY_paternal_593;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_593;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_593.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_593.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987349;alternative_source_transcripts=hg002_chrY_paternal_593.1;transcript_id=HG003_chrY_T0000710;gene_id=HG003_chrY_G0000268;Parent=HG003_chrY_T0000710;transcript_name=hg002_chrY_paternal_593.1;gene_name=LOC107987349;ID=exon:HG003_chrY_T0000710:0;Name=LOC107987349;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24890844	24892378	.	-	.	source_transcript=hg002_chrY_paternal_593.1;source_transcript_name=hg002_chrY_paternal_593.1;source_gene=hg002_chrY_paternal_593;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_593;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_593.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_593.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987349;alternative_source_transcripts=hg002_chrY_paternal_593.1;transcript_id=HG003_chrY_T0000710;gene_id=HG003_chrY_G0000268;Parent=HG003_chrY_T0000710;transcript_name=hg002_chrY_paternal_593.1;gene_name=LOC107987349;ID=intron:HG003_chrY_T0000710:0;Name=LOC107987349;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24892379	24892439	.	-	.	source_transcript=hg002_chrY_paternal_593.1;source_transcript_name=hg002_chrY_paternal_593.1;source_gene=hg002_chrY_paternal_593;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_593;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_593.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_593.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987349;alternative_source_transcripts=hg002_chrY_paternal_593.1;transcript_id=HG003_chrY_T0000710;gene_id=HG003_chrY_G0000268;Parent=HG003_chrY_T0000710;transcript_name=hg002_chrY_paternal_593.1;gene_name=LOC107987349;ID=exon:HG003_chrY_T0000710:1;Name=LOC107987349;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24892440	24892556	.	-	.	source_transcript=hg002_chrY_paternal_593.1;source_transcript_name=hg002_chrY_paternal_593.1;source_gene=hg002_chrY_paternal_593;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_593;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_593.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_593.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987349;alternative_source_transcripts=hg002_chrY_paternal_593.1;transcript_id=HG003_chrY_T0000710;gene_id=HG003_chrY_G0000268;Parent=HG003_chrY_T0000710;transcript_name=hg002_chrY_paternal_593.1;gene_name=LOC107987349;ID=intron:HG003_chrY_T0000710:1;Name=LOC107987349;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24892557	24892639	.	-	.	source_transcript=hg002_chrY_paternal_593.1;source_transcript_name=hg002_chrY_paternal_593.1;source_gene=hg002_chrY_paternal_593;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_593;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_593.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_593.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987349;alternative_source_transcripts=hg002_chrY_paternal_593.1;transcript_id=HG003_chrY_T0000710;gene_id=HG003_chrY_G0000268;Parent=HG003_chrY_T0000710;transcript_name=hg002_chrY_paternal_593.1;gene_name=LOC107987349;ID=exon:HG003_chrY_T0000710:2;Name=LOC107987349;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	25054069	25095571	.	-	.	source_gene_common_name=REREP1Y;source_gene=hg002_chrY_paternal_596;alternative_source_transcripts=hg002_chrY_paternal_668.1;gene_id=HG003_chrY_G0000269;gene_biotype=transcribed_pseudogene;gene_name=REREP1Y;gene_sources=liftoff;ID=HG003_chrY_G0000269;Name=REREP1Y
HG003_chrY	CAT	transcript	25054069	25095571	1000	-	.	source_transcript=hg002_chrY_paternal_596.1;source_transcript_name=hg002_chrY_paternal_596.1;source_gene=hg002_chrY_paternal_596;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_596;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_596.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_596.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=REREP1Y;alternative_source_transcripts=hg002_chrY_paternal_668.1;transcript_id=HG003_chrY_T0000711;gene_id=HG003_chrY_G0000269;Parent=HG003_chrY_G0000269;transcript_name=hg002_chrY_paternal_596.1;gene_name=REREP1Y;ID=HG003_chrY_T0000711;Name=REREP1Y
HG003_chrY	CAT	exon	25054069	25058658	.	-	.	source_transcript=hg002_chrY_paternal_596.1;source_transcript_name=hg002_chrY_paternal_596.1;source_gene=hg002_chrY_paternal_596;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_596;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_596.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_596.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=REREP1Y;alternative_source_transcripts=hg002_chrY_paternal_668.1;transcript_id=HG003_chrY_T0000711;gene_id=HG003_chrY_G0000269;Parent=HG003_chrY_T0000711;transcript_name=hg002_chrY_paternal_596.1;gene_name=REREP1Y;ID=exon:HG003_chrY_T0000711:0;Name=REREP1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25058659	25068276	.	-	.	source_transcript=hg002_chrY_paternal_596.1;source_transcript_name=hg002_chrY_paternal_596.1;source_gene=hg002_chrY_paternal_596;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_596;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_596.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_596.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=REREP1Y;alternative_source_transcripts=hg002_chrY_paternal_668.1;transcript_id=HG003_chrY_T0000711;gene_id=HG003_chrY_G0000269;Parent=HG003_chrY_T0000711;transcript_name=hg002_chrY_paternal_596.1;gene_name=REREP1Y;ID=intron:HG003_chrY_T0000711:0;Name=REREP1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25068277	25068349	.	-	.	source_transcript=hg002_chrY_paternal_596.1;source_transcript_name=hg002_chrY_paternal_596.1;source_gene=hg002_chrY_paternal_596;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_596;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_596.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_596.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=REREP1Y;alternative_source_transcripts=hg002_chrY_paternal_668.1;transcript_id=HG003_chrY_T0000711;gene_id=HG003_chrY_G0000269;Parent=HG003_chrY_T0000711;transcript_name=hg002_chrY_paternal_596.1;gene_name=REREP1Y;ID=exon:HG003_chrY_T0000711:1;Name=REREP1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25068350	25095168	.	-	.	source_transcript=hg002_chrY_paternal_596.1;source_transcript_name=hg002_chrY_paternal_596.1;source_gene=hg002_chrY_paternal_596;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_596;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_596.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_596.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=REREP1Y;alternative_source_transcripts=hg002_chrY_paternal_668.1;transcript_id=HG003_chrY_T0000711;gene_id=HG003_chrY_G0000269;Parent=HG003_chrY_T0000711;transcript_name=hg002_chrY_paternal_596.1;gene_name=REREP1Y;ID=intron:HG003_chrY_T0000711:1;Name=REREP1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25095169	25095571	.	-	.	source_transcript=hg002_chrY_paternal_596.1;source_transcript_name=hg002_chrY_paternal_596.1;source_gene=hg002_chrY_paternal_596;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_596;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_596.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_596.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=REREP1Y;alternative_source_transcripts=hg002_chrY_paternal_668.1;transcript_id=HG003_chrY_T0000711;gene_id=HG003_chrY_G0000269;Parent=HG003_chrY_T0000711;transcript_name=hg002_chrY_paternal_596.1;gene_name=REREP1Y;ID=exon:HG003_chrY_T0000711:2;Name=REREP1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	25107575	25107712	.	+	.	source_gene_common_name=LOC124900506;source_gene=hg002_chrY_paternal_597;alternative_source_transcripts=hg002_chrY_paternal_669.1;gene_id=HG003_chrY_G0000270;gene_biotype=snoRNA;gene_name=LOC124900506;gene_sources=liftoff;ID=HG003_chrY_G0000270;Name=LOC124900506
HG003_chrY	CAT	transcript	25107575	25107712	1000	+	.	source_transcript=hg002_chrY_paternal_597.1;source_transcript_name=hg002_chrY_paternal_597.1;source_gene=hg002_chrY_paternal_597;source_gene_biotype=snoRNA;original_gene_id=hg002_chrY_paternal_597;gene_biotype=snoRNA;transcript_biotype=snoRNA;alignment_id=hg002_chrY_paternal_597.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_597.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124900506;alternative_source_transcripts=hg002_chrY_paternal_669.1;transcript_id=HG003_chrY_T0000712;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_G0000270;transcript_name=hg002_chrY_paternal_597.1;gene_name=LOC124900506;ID=HG003_chrY_T0000712;Name=LOC124900506
HG003_chrY	CAT	exon	25107575	25107712	.	+	.	source_transcript=hg002_chrY_paternal_597.1;source_transcript_name=hg002_chrY_paternal_597.1;source_gene=hg002_chrY_paternal_597;source_gene_biotype=snoRNA;original_gene_id=hg002_chrY_paternal_597;gene_biotype=snoRNA;transcript_biotype=snoRNA;alignment_id=hg002_chrY_paternal_597.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_597.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124900506;alternative_source_transcripts=hg002_chrY_paternal_669.1;transcript_id=HG003_chrY_T0000712;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000712;transcript_name=hg002_chrY_paternal_597.1;gene_name=LOC124900506;ID=exon:HG003_chrY_T0000712:0;Name=LOC124900506;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	25261337	25269331	.	-	.	source_gene_common_name=LOC105377244;source_gene=hg002_chrY_paternal_673;alternative_source_transcripts=hg002_chrY_paternal_673.1,hg002_chrY_paternal_673.1;gene_id=HG003_chrY_G0000271;gene_biotype=lncRNA;gene_name=LOC105377244;gene_sources=liftoff;ID=HG003_chrY_G0000271;Name=LOC105377244
HG003_chrY	CAT	transcript	25261337	25269331	1000	-	.	source_transcript=hg002_chrY_paternal_673.1;source_transcript_name=hg002_chrY_paternal_673.1;source_gene=hg002_chrY_paternal_673;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_673;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_673.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_673.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377244;alternative_source_transcripts=hg002_chrY_paternal_673.1,hg002_chrY_paternal_673.1;transcript_id=HG003_chrY_T0000713;gene_id=HG003_chrY_G0000271;Parent=HG003_chrY_G0000271;transcript_name=hg002_chrY_paternal_673.1;gene_name=LOC105377244;ID=HG003_chrY_T0000713;Name=LOC105377244
HG003_chrY	CAT	exon	25261337	25265939	.	-	.	source_transcript=hg002_chrY_paternal_673.1;source_transcript_name=hg002_chrY_paternal_673.1;source_gene=hg002_chrY_paternal_673;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_673;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_673.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_673.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377244;alternative_source_transcripts=hg002_chrY_paternal_673.1,hg002_chrY_paternal_673.1;transcript_id=HG003_chrY_T0000713;gene_id=HG003_chrY_G0000271;Parent=HG003_chrY_T0000713;transcript_name=hg002_chrY_paternal_673.1;gene_name=LOC105377244;ID=exon:HG003_chrY_T0000713:0;Name=LOC105377244;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25265940	25266805	.	-	.	source_transcript=hg002_chrY_paternal_673.1;source_transcript_name=hg002_chrY_paternal_673.1;source_gene=hg002_chrY_paternal_673;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_673;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_673.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_673.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377244;alternative_source_transcripts=hg002_chrY_paternal_673.1,hg002_chrY_paternal_673.1;transcript_id=HG003_chrY_T0000713;gene_id=HG003_chrY_G0000271;Parent=HG003_chrY_T0000713;transcript_name=hg002_chrY_paternal_673.1;gene_name=LOC105377244;ID=intron:HG003_chrY_T0000713:0;Name=LOC105377244;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25266806	25266972	.	-	.	source_transcript=hg002_chrY_paternal_673.1;source_transcript_name=hg002_chrY_paternal_673.1;source_gene=hg002_chrY_paternal_673;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_673;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_673.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_673.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377244;alternative_source_transcripts=hg002_chrY_paternal_673.1,hg002_chrY_paternal_673.1;transcript_id=HG003_chrY_T0000713;gene_id=HG003_chrY_G0000271;Parent=HG003_chrY_T0000713;transcript_name=hg002_chrY_paternal_673.1;gene_name=LOC105377244;ID=exon:HG003_chrY_T0000713:1;Name=LOC105377244;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25266973	25269100	.	-	.	source_transcript=hg002_chrY_paternal_673.1;source_transcript_name=hg002_chrY_paternal_673.1;source_gene=hg002_chrY_paternal_673;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_673;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_673.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_673.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377244;alternative_source_transcripts=hg002_chrY_paternal_673.1,hg002_chrY_paternal_673.1;transcript_id=HG003_chrY_T0000713;gene_id=HG003_chrY_G0000271;Parent=HG003_chrY_T0000713;transcript_name=hg002_chrY_paternal_673.1;gene_name=LOC105377244;ID=intron:HG003_chrY_T0000713:1;Name=LOC105377244;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25269101	25269331	.	-	.	source_transcript=hg002_chrY_paternal_673.1;source_transcript_name=hg002_chrY_paternal_673.1;source_gene=hg002_chrY_paternal_673;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_673;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_673.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_673.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377244;alternative_source_transcripts=hg002_chrY_paternal_673.1,hg002_chrY_paternal_673.1;transcript_id=HG003_chrY_T0000713;gene_id=HG003_chrY_G0000271;Parent=HG003_chrY_T0000713;transcript_name=hg002_chrY_paternal_673.1;gene_name=LOC105377244;ID=exon:HG003_chrY_T0000713:2;Name=LOC105377244;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	25284850	25301021	.	+	.	source_gene_common_name=LOC102723869;source_gene=hg002_chrY_paternal_675;alternative_source_transcripts=hg002_chrY_paternal_675.1,hg002_chrY_paternal_675.1;gene_id=HG003_chrY_G0000272;gene_biotype=lncRNA;gene_name=LOC102723869;gene_sources=liftoff;ID=HG003_chrY_G0000272;Name=LOC102723869
HG003_chrY	CAT	transcript	25284850	25301021	1000	+	.	source_transcript=hg002_chrY_paternal_675.1;source_transcript_name=hg002_chrY_paternal_675.1;source_gene=hg002_chrY_paternal_675;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_675;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_675.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_675.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102723869;alternative_source_transcripts=hg002_chrY_paternal_675.1,hg002_chrY_paternal_675.1;transcript_id=HG003_chrY_T0000714;gene_id=HG003_chrY_G0000272;Parent=HG003_chrY_G0000272;transcript_name=hg002_chrY_paternal_675.1;gene_name=LOC102723869;ID=HG003_chrY_T0000714;Name=LOC102723869
HG003_chrY	CAT	exon	25284850	25285117	.	+	.	source_transcript=hg002_chrY_paternal_675.1;source_transcript_name=hg002_chrY_paternal_675.1;source_gene=hg002_chrY_paternal_675;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_675;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_675.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_675.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102723869;alternative_source_transcripts=hg002_chrY_paternal_675.1,hg002_chrY_paternal_675.1;transcript_id=HG003_chrY_T0000714;gene_id=HG003_chrY_G0000272;Parent=HG003_chrY_T0000714;transcript_name=hg002_chrY_paternal_675.1;gene_name=LOC102723869;ID=exon:HG003_chrY_T0000714:0;Name=LOC102723869;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25285118	25297151	.	+	.	source_transcript=hg002_chrY_paternal_675.1;source_transcript_name=hg002_chrY_paternal_675.1;source_gene=hg002_chrY_paternal_675;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_675;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_675.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_675.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102723869;alternative_source_transcripts=hg002_chrY_paternal_675.1,hg002_chrY_paternal_675.1;transcript_id=HG003_chrY_T0000714;gene_id=HG003_chrY_G0000272;Parent=HG003_chrY_T0000714;transcript_name=hg002_chrY_paternal_675.1;gene_name=LOC102723869;ID=intron:HG003_chrY_T0000714:0;Name=LOC102723869;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25297152	25297180	.	+	.	source_transcript=hg002_chrY_paternal_675.1;source_transcript_name=hg002_chrY_paternal_675.1;source_gene=hg002_chrY_paternal_675;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_675;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_675.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_675.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102723869;alternative_source_transcripts=hg002_chrY_paternal_675.1,hg002_chrY_paternal_675.1;transcript_id=HG003_chrY_T0000714;gene_id=HG003_chrY_G0000272;Parent=HG003_chrY_T0000714;transcript_name=hg002_chrY_paternal_675.1;gene_name=LOC102723869;ID=exon:HG003_chrY_T0000714:1;Name=LOC102723869;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25297181	25297274	.	+	.	source_transcript=hg002_chrY_paternal_675.1;source_transcript_name=hg002_chrY_paternal_675.1;source_gene=hg002_chrY_paternal_675;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_675;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_675.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_675.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102723869;alternative_source_transcripts=hg002_chrY_paternal_675.1,hg002_chrY_paternal_675.1;transcript_id=HG003_chrY_T0000714;gene_id=HG003_chrY_G0000272;Parent=HG003_chrY_T0000714;transcript_name=hg002_chrY_paternal_675.1;gene_name=LOC102723869;ID=intron:HG003_chrY_T0000714:1;Name=LOC102723869;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25297275	25297347	.	+	.	source_transcript=hg002_chrY_paternal_675.1;source_transcript_name=hg002_chrY_paternal_675.1;source_gene=hg002_chrY_paternal_675;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_675;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_675.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_675.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102723869;alternative_source_transcripts=hg002_chrY_paternal_675.1,hg002_chrY_paternal_675.1;transcript_id=HG003_chrY_T0000714;gene_id=HG003_chrY_G0000272;Parent=HG003_chrY_T0000714;transcript_name=hg002_chrY_paternal_675.1;gene_name=LOC102723869;ID=exon:HG003_chrY_T0000714:2;Name=LOC102723869;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25297348	25300990	.	+	.	source_transcript=hg002_chrY_paternal_675.1;source_transcript_name=hg002_chrY_paternal_675.1;source_gene=hg002_chrY_paternal_675;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_675;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_675.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_675.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102723869;alternative_source_transcripts=hg002_chrY_paternal_675.1,hg002_chrY_paternal_675.1;transcript_id=HG003_chrY_T0000714;gene_id=HG003_chrY_G0000272;Parent=HG003_chrY_T0000714;transcript_name=hg002_chrY_paternal_675.1;gene_name=LOC102723869;ID=intron:HG003_chrY_T0000714:2;Name=LOC102723869;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25300991	25301021	.	+	.	source_transcript=hg002_chrY_paternal_675.1;source_transcript_name=hg002_chrY_paternal_675.1;source_gene=hg002_chrY_paternal_675;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_675;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_675.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_675.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102723869;alternative_source_transcripts=hg002_chrY_paternal_675.1,hg002_chrY_paternal_675.1;transcript_id=HG003_chrY_T0000714;gene_id=HG003_chrY_G0000272;Parent=HG003_chrY_T0000714;transcript_name=hg002_chrY_paternal_675.1;gene_name=LOC102723869;ID=exon:HG003_chrY_T0000714:3;Name=LOC102723869;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	58983493	58998190	.	+	.	source_gene_common_name=SPRY3;source_gene=hg002_chrY_paternal_683;alternative_source_transcripts=hg002_chrY_paternal_683.1,hg002_chrY_paternal_683.1;gene_id=HG003_chrY_G0000273;gene_biotype=protein_coding;gene_name=SPRY3;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000273;Name=SPRY3
HG003_chrY	CAT	transcript	58983493	58998190	100	+	.	source_transcript=hg002_chrY_paternal_683.1;source_transcript_name=hg002_chrY_paternal_683.1;source_gene=hg002_chrY_paternal_683;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_683;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_683.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_683.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SPRY3;alternative_source_transcripts=hg002_chrY_paternal_683.1,hg002_chrY_paternal_683.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000715;gene_id=HG003_chrY_G0000273;Parent=HG003_chrY_G0000273;transcript_name=hg002_chrY_paternal_683.1;gene_name=SPRY3;ID=HG003_chrY_T0000715;Name=SPRY3
HG003_chrY	CAT	exon	58983493	58983833	.	+	.	source_transcript=hg002_chrY_paternal_683.1;source_transcript_name=hg002_chrY_paternal_683.1;source_gene=hg002_chrY_paternal_683;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_683;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_683.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_683.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SPRY3;alternative_source_transcripts=hg002_chrY_paternal_683.1,hg002_chrY_paternal_683.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000715;gene_id=HG003_chrY_G0000273;Parent=HG003_chrY_T0000715;transcript_name=hg002_chrY_paternal_683.1;gene_name=SPRY3;ID=exon:HG003_chrY_T0000715:0;Name=SPRY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	58983834	58989463	.	+	.	source_transcript=hg002_chrY_paternal_683.1;source_transcript_name=hg002_chrY_paternal_683.1;source_gene=hg002_chrY_paternal_683;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_683;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_683.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_683.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SPRY3;alternative_source_transcripts=hg002_chrY_paternal_683.1,hg002_chrY_paternal_683.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000715;gene_id=HG003_chrY_G0000273;Parent=HG003_chrY_T0000715;transcript_name=hg002_chrY_paternal_683.1;gene_name=SPRY3;ID=intron:HG003_chrY_T0000715:0;Name=SPRY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	58989464	58998190	.	+	.	source_transcript=hg002_chrY_paternal_683.1;source_transcript_name=hg002_chrY_paternal_683.1;source_gene=hg002_chrY_paternal_683;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_683;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_683.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_683.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SPRY3;alternative_source_transcripts=hg002_chrY_paternal_683.1,hg002_chrY_paternal_683.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000715;gene_id=HG003_chrY_G0000273;Parent=HG003_chrY_T0000715;transcript_name=hg002_chrY_paternal_683.1;gene_name=SPRY3;ID=exon:HG003_chrY_T0000715:1;Name=SPRY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	58989570	58990436	.	+	0	source_transcript=hg002_chrY_paternal_683.1;source_transcript_name=hg002_chrY_paternal_683.1;source_gene=hg002_chrY_paternal_683;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_683;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_683.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_683.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SPRY3;alternative_source_transcripts=hg002_chrY_paternal_683.1,hg002_chrY_paternal_683.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000715;gene_id=HG003_chrY_G0000273;Parent=HG003_chrY_T0000715;transcript_name=hg002_chrY_paternal_683.1;gene_name=SPRY3;ID=CDS:HG003_chrY_T0000715:0;Name=SPRY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	58989570	58989572	.	+	0	source_transcript=hg002_chrY_paternal_683.1;source_transcript_name=hg002_chrY_paternal_683.1;source_gene=hg002_chrY_paternal_683;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_683;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_683.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_683.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SPRY3;alternative_source_transcripts=hg002_chrY_paternal_683.1,hg002_chrY_paternal_683.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000715;gene_id=HG003_chrY_G0000273;Parent=HG003_chrY_T0000715;transcript_name=hg002_chrY_paternal_683.1;gene_name=SPRY3;ID=start_codon:HG003_chrY_T0000715;Name=SPRY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	58990434	58990436	.	+	0	source_transcript=hg002_chrY_paternal_683.1;source_transcript_name=hg002_chrY_paternal_683.1;source_gene=hg002_chrY_paternal_683;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_683;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_683.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_683.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SPRY3;alternative_source_transcripts=hg002_chrY_paternal_683.1,hg002_chrY_paternal_683.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000715;gene_id=HG003_chrY_G0000273;Parent=HG003_chrY_T0000715;transcript_name=hg002_chrY_paternal_683.1;gene_name=SPRY3;ID=stop_codon:HG003_chrY_T0000715;Name=SPRY3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	59099815	59162249	.	+	.	source_gene_common_name=VAMP7;source_gene=hg002_chrY_paternal_687;alternative_source_transcripts=hg002_chrY_paternal_687.1,hg002_chrY_paternal_687.1;gene_id=HG003_chrY_G0000274;gene_biotype=protein_coding;gene_name=VAMP7;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000274;Name=VAMP7
HG003_chrY	CAT	transcript	59099815	59162249	100	+	.	source_transcript=hg002_chrY_paternal_687.1;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.1,hg002_chrY_paternal_687.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000716;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_G0000274;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=HG003_chrY_T0000716;Name=VAMP7
HG003_chrY	CAT	exon	59099815	59099918	.	+	.	source_transcript=hg002_chrY_paternal_687.1;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.1,hg002_chrY_paternal_687.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000716;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000716;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:HG003_chrY_T0000716:0;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59099919	59107928	.	+	.	source_transcript=hg002_chrY_paternal_687.1;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.1,hg002_chrY_paternal_687.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000716;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000716;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:HG003_chrY_T0000716:0;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59107929	59108018	.	+	.	source_transcript=hg002_chrY_paternal_687.1;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.1,hg002_chrY_paternal_687.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000716;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000716;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:HG003_chrY_T0000716:1;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59107938	59108018	.	+	0	source_transcript=hg002_chrY_paternal_687.1;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.1,hg002_chrY_paternal_687.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000716;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000716;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:HG003_chrY_T0000716:0;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	59107938	59107940	.	+	0	source_transcript=hg002_chrY_paternal_687.1;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.1,hg002_chrY_paternal_687.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000716;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000716;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=start_codon:HG003_chrY_T0000716;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59108019	59116585	.	+	.	source_transcript=hg002_chrY_paternal_687.1;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.1,hg002_chrY_paternal_687.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000716;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000716;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:HG003_chrY_T0000716:1;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59116586	59116723	.	+	.	source_transcript=hg002_chrY_paternal_687.1;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.1,hg002_chrY_paternal_687.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000716;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000716;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:HG003_chrY_T0000716:2;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59116586	59116723	.	+	0	source_transcript=hg002_chrY_paternal_687.1;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.1,hg002_chrY_paternal_687.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000716;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000716;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:HG003_chrY_T0000716:1;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59116724	59118972	.	+	.	source_transcript=hg002_chrY_paternal_687.1;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.1,hg002_chrY_paternal_687.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000716;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000716;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:HG003_chrY_T0000716:2;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59118973	59119063	.	+	.	source_transcript=hg002_chrY_paternal_687.1;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.1,hg002_chrY_paternal_687.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000716;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000716;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:HG003_chrY_T0000716:3;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59118973	59119063	.	+	0	source_transcript=hg002_chrY_paternal_687.1;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.1,hg002_chrY_paternal_687.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000716;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000716;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:HG003_chrY_T0000716:2;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59119064	59138296	.	+	.	source_transcript=hg002_chrY_paternal_687.1;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.1,hg002_chrY_paternal_687.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000716;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000716;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:HG003_chrY_T0000716:3;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59138297	59138364	.	+	.	source_transcript=hg002_chrY_paternal_687.1;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.1,hg002_chrY_paternal_687.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000716;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000716;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:HG003_chrY_T0000716:4;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59138297	59138364	.	+	2	source_transcript=hg002_chrY_paternal_687.1;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.1,hg002_chrY_paternal_687.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000716;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000716;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:HG003_chrY_T0000716:3;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59138365	59158181	.	+	.	source_transcript=hg002_chrY_paternal_687.1;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.1,hg002_chrY_paternal_687.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000716;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000716;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:HG003_chrY_T0000716:4;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59158182	59158274	.	+	.	source_transcript=hg002_chrY_paternal_687.1;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.1,hg002_chrY_paternal_687.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000716;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000716;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:HG003_chrY_T0000716:5;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59158182	59158274	.	+	0	source_transcript=hg002_chrY_paternal_687.1;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.1,hg002_chrY_paternal_687.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000716;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000716;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:HG003_chrY_T0000716:4;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59158275	59160362	.	+	.	source_transcript=hg002_chrY_paternal_687.1;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.1,hg002_chrY_paternal_687.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000716;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000716;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:HG003_chrY_T0000716:5;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59160363	59162249	.	+	.	source_transcript=hg002_chrY_paternal_687.1;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.1,hg002_chrY_paternal_687.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000716;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000716;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:HG003_chrY_T0000716:6;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59160363	59160431	.	+	0	source_transcript=hg002_chrY_paternal_687.1;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.1,hg002_chrY_paternal_687.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000716;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000716;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:HG003_chrY_T0000716:5;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	59160429	59160431	.	+	0	source_transcript=hg002_chrY_paternal_687.1;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.1,hg002_chrY_paternal_687.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000716;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000716;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=stop_codon:HG003_chrY_T0000716;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59099815	59162249	100	+	.	source_transcript=hg002_chrY_paternal_687.2;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.2,hg002_chrY_paternal_687.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000717;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_G0000274;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=HG003_chrY_T0000717;Name=VAMP7
HG003_chrY	CAT	exon	59099815	59099918	.	+	.	source_transcript=hg002_chrY_paternal_687.2;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.2,hg002_chrY_paternal_687.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000717;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000717;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:HG003_chrY_T0000717:0;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59099919	59107928	.	+	.	source_transcript=hg002_chrY_paternal_687.2;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.2,hg002_chrY_paternal_687.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000717;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000717;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:HG003_chrY_T0000717:0;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59107929	59108083	.	+	.	source_transcript=hg002_chrY_paternal_687.2;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.2,hg002_chrY_paternal_687.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000717;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000717;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:HG003_chrY_T0000717:1;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59107938	59108083	.	+	0	source_transcript=hg002_chrY_paternal_687.2;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.2,hg002_chrY_paternal_687.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000717;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000717;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:HG003_chrY_T0000717:0;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	59107938	59107940	.	+	0	source_transcript=hg002_chrY_paternal_687.2;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.2,hg002_chrY_paternal_687.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000717;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000717;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=start_codon:HG003_chrY_T0000717;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59108084	59114096	.	+	.	source_transcript=hg002_chrY_paternal_687.2;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.2,hg002_chrY_paternal_687.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000717;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000717;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:HG003_chrY_T0000717:1;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59114097	59114154	.	+	.	source_transcript=hg002_chrY_paternal_687.2;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.2,hg002_chrY_paternal_687.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000717;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000717;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:HG003_chrY_T0000717:2;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59114097	59114154	.	+	1	source_transcript=hg002_chrY_paternal_687.2;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.2,hg002_chrY_paternal_687.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000717;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000717;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:HG003_chrY_T0000717:1;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59114155	59116585	.	+	.	source_transcript=hg002_chrY_paternal_687.2;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.2,hg002_chrY_paternal_687.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000717;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000717;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:HG003_chrY_T0000717:2;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59116586	59116723	.	+	.	source_transcript=hg002_chrY_paternal_687.2;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.2,hg002_chrY_paternal_687.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000717;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000717;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:HG003_chrY_T0000717:3;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59116586	59116723	.	+	0	source_transcript=hg002_chrY_paternal_687.2;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.2,hg002_chrY_paternal_687.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000717;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000717;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:HG003_chrY_T0000717:2;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59116724	59118972	.	+	.	source_transcript=hg002_chrY_paternal_687.2;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.2,hg002_chrY_paternal_687.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000717;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000717;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:HG003_chrY_T0000717:3;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59118973	59119063	.	+	.	source_transcript=hg002_chrY_paternal_687.2;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.2,hg002_chrY_paternal_687.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000717;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000717;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:HG003_chrY_T0000717:4;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59118973	59119063	.	+	0	source_transcript=hg002_chrY_paternal_687.2;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.2,hg002_chrY_paternal_687.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000717;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000717;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:HG003_chrY_T0000717:3;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59119064	59158181	.	+	.	source_transcript=hg002_chrY_paternal_687.2;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.2,hg002_chrY_paternal_687.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000717;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000717;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:HG003_chrY_T0000717:4;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59158182	59158274	.	+	.	source_transcript=hg002_chrY_paternal_687.2;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.2,hg002_chrY_paternal_687.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000717;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000717;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:HG003_chrY_T0000717:5;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59158182	59158274	.	+	2	source_transcript=hg002_chrY_paternal_687.2;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.2,hg002_chrY_paternal_687.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000717;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000717;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:HG003_chrY_T0000717:4;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59158275	59160362	.	+	.	source_transcript=hg002_chrY_paternal_687.2;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.2,hg002_chrY_paternal_687.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000717;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000717;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:HG003_chrY_T0000717:5;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59160363	59162249	.	+	.	source_transcript=hg002_chrY_paternal_687.2;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.2,hg002_chrY_paternal_687.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000717;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000717;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:HG003_chrY_T0000717:6;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59160363	59160619	.	+	2	source_transcript=hg002_chrY_paternal_687.2;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.2,hg002_chrY_paternal_687.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000717;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000717;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:HG003_chrY_T0000717:5;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	59160617	59160619	.	+	0	source_transcript=hg002_chrY_paternal_687.2;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.2,hg002_chrY_paternal_687.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000717;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000717;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=stop_codon:HG003_chrY_T0000717;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59099815	59162249	100	+	.	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000718;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_G0000274;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=HG003_chrY_T0000718;Name=VAMP7
HG003_chrY	CAT	exon	59099815	59099918	.	+	.	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000718;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000718;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:HG003_chrY_T0000718:0;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59099919	59107928	.	+	.	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000718;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000718;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:HG003_chrY_T0000718:0;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59107929	59108083	.	+	.	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000718;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000718;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:HG003_chrY_T0000718:1;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59107938	59108083	.	+	0	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000718;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000718;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:HG003_chrY_T0000718:0;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	59107938	59107940	.	+	0	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000718;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000718;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=start_codon:HG003_chrY_T0000718;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59108084	59114096	.	+	.	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000718;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000718;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:HG003_chrY_T0000718:1;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59114097	59114154	.	+	.	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000718;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000718;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:HG003_chrY_T0000718:2;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59114097	59114154	.	+	1	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000718;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000718;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:HG003_chrY_T0000718:1;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59114155	59116585	.	+	.	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000718;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000718;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:HG003_chrY_T0000718:2;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59116586	59116723	.	+	.	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000718;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000718;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:HG003_chrY_T0000718:3;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59116586	59116723	.	+	0	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000718;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000718;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:HG003_chrY_T0000718:2;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59116724	59118972	.	+	.	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000718;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000718;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:HG003_chrY_T0000718:3;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59118973	59119063	.	+	.	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000718;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000718;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:HG003_chrY_T0000718:4;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59118973	59119063	.	+	0	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000718;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000718;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:HG003_chrY_T0000718:3;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59119064	59138296	.	+	.	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000718;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000718;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:HG003_chrY_T0000718:4;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59138297	59138364	.	+	.	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000718;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000718;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:HG003_chrY_T0000718:5;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59138297	59138364	.	+	2	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000718;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000718;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:HG003_chrY_T0000718:4;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59138365	59158181	.	+	.	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000718;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000718;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:HG003_chrY_T0000718:5;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59158182	59158274	.	+	.	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000718;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000718;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:HG003_chrY_T0000718:6;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59158182	59158274	.	+	0	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000718;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000718;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:HG003_chrY_T0000718:5;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59158275	59160362	.	+	.	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000718;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000718;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:HG003_chrY_T0000718:6;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59160363	59162249	.	+	.	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000718;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000718;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:HG003_chrY_T0000718:7;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59160363	59160431	.	+	0	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000718;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000718;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:HG003_chrY_T0000718:6;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	59160429	59160431	.	+	0	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000718;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000718;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=stop_codon:HG003_chrY_T0000718;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59099815	59162249	100	+	.	source_transcript=hg002_chrY_paternal_687.6;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.6,hg002_chrY_paternal_687.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000719;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_G0000274;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=HG003_chrY_T0000719;Name=VAMP7
HG003_chrY	CAT	exon	59099815	59099918	.	+	.	source_transcript=hg002_chrY_paternal_687.6;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.6,hg002_chrY_paternal_687.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000719;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000719;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:HG003_chrY_T0000719:0;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59099919	59107928	.	+	.	source_transcript=hg002_chrY_paternal_687.6;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.6,hg002_chrY_paternal_687.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000719;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000719;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:HG003_chrY_T0000719:0;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59107929	59108104	.	+	.	source_transcript=hg002_chrY_paternal_687.6;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.6,hg002_chrY_paternal_687.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000719;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000719;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:HG003_chrY_T0000719:1;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59108100	59108104	.	+	0	source_transcript=hg002_chrY_paternal_687.6;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.6,hg002_chrY_paternal_687.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000719;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000719;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:HG003_chrY_T0000719:0;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	59108100	59108102	.	+	0	source_transcript=hg002_chrY_paternal_687.6;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.6,hg002_chrY_paternal_687.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000719;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000719;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=start_codon:HG003_chrY_T0000719;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59108105	59114096	.	+	.	source_transcript=hg002_chrY_paternal_687.6;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.6,hg002_chrY_paternal_687.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000719;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000719;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:HG003_chrY_T0000719:1;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59114097	59114154	.	+	.	source_transcript=hg002_chrY_paternal_687.6;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.6,hg002_chrY_paternal_687.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000719;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000719;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:HG003_chrY_T0000719:2;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59114097	59114154	.	+	1	source_transcript=hg002_chrY_paternal_687.6;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.6,hg002_chrY_paternal_687.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000719;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000719;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:HG003_chrY_T0000719:1;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59114155	59116585	.	+	.	source_transcript=hg002_chrY_paternal_687.6;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.6,hg002_chrY_paternal_687.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000719;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000719;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:HG003_chrY_T0000719:2;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59116586	59116723	.	+	.	source_transcript=hg002_chrY_paternal_687.6;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.6,hg002_chrY_paternal_687.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000719;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000719;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:HG003_chrY_T0000719:3;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59116586	59116723	.	+	0	source_transcript=hg002_chrY_paternal_687.6;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.6,hg002_chrY_paternal_687.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000719;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000719;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:HG003_chrY_T0000719:2;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59116724	59118972	.	+	.	source_transcript=hg002_chrY_paternal_687.6;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.6,hg002_chrY_paternal_687.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000719;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000719;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:HG003_chrY_T0000719:3;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59118973	59119063	.	+	.	source_transcript=hg002_chrY_paternal_687.6;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.6,hg002_chrY_paternal_687.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000719;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000719;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:HG003_chrY_T0000719:4;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59118973	59119063	.	+	0	source_transcript=hg002_chrY_paternal_687.6;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.6,hg002_chrY_paternal_687.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000719;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000719;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:HG003_chrY_T0000719:3;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59119064	59158181	.	+	.	source_transcript=hg002_chrY_paternal_687.6;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.6,hg002_chrY_paternal_687.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000719;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000719;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:HG003_chrY_T0000719:4;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59158182	59158274	.	+	.	source_transcript=hg002_chrY_paternal_687.6;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.6,hg002_chrY_paternal_687.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000719;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000719;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:HG003_chrY_T0000719:5;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59158182	59158274	.	+	2	source_transcript=hg002_chrY_paternal_687.6;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.6,hg002_chrY_paternal_687.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000719;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000719;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:HG003_chrY_T0000719:4;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59158275	59160362	.	+	.	source_transcript=hg002_chrY_paternal_687.6;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.6,hg002_chrY_paternal_687.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000719;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000719;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:HG003_chrY_T0000719:5;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59160363	59162249	.	+	.	source_transcript=hg002_chrY_paternal_687.6;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.6,hg002_chrY_paternal_687.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000719;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000719;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:HG003_chrY_T0000719:6;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59160363	59160619	.	+	2	source_transcript=hg002_chrY_paternal_687.6;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.6,hg002_chrY_paternal_687.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000719;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000719;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:HG003_chrY_T0000719:5;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	59160617	59160619	.	+	0	source_transcript=hg002_chrY_paternal_687.6;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.6,hg002_chrY_paternal_687.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000719;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000719;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=stop_codon:HG003_chrY_T0000719;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59099815	59162249	100	+	.	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000720;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_G0000274;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=HG003_chrY_T0000720;Name=VAMP7
HG003_chrY	CAT	exon	59099815	59099918	.	+	.	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000720;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000720;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:HG003_chrY_T0000720:0;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59099919	59107928	.	+	.	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000720;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000720;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:HG003_chrY_T0000720:0;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59107929	59108104	.	+	.	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000720;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000720;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:HG003_chrY_T0000720:1;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59108100	59108104	.	+	0	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000720;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000720;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:HG003_chrY_T0000720:0;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	59108100	59108102	.	+	0	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000720;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000720;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=start_codon:HG003_chrY_T0000720;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59108105	59114096	.	+	.	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000720;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000720;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:HG003_chrY_T0000720:1;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59114097	59114154	.	+	.	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000720;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000720;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:HG003_chrY_T0000720:2;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59114097	59114154	.	+	1	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000720;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000720;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:HG003_chrY_T0000720:1;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59114155	59116585	.	+	.	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000720;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000720;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:HG003_chrY_T0000720:2;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59116586	59116723	.	+	.	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000720;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000720;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:HG003_chrY_T0000720:3;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59116586	59116723	.	+	0	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000720;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000720;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:HG003_chrY_T0000720:2;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59116724	59118972	.	+	.	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000720;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000720;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:HG003_chrY_T0000720:3;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59118973	59119063	.	+	.	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000720;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000720;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:HG003_chrY_T0000720:4;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59118973	59119063	.	+	0	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000720;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000720;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:HG003_chrY_T0000720:3;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59119064	59138296	.	+	.	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000720;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000720;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:HG003_chrY_T0000720:4;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59138297	59138364	.	+	.	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000720;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000720;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:HG003_chrY_T0000720:5;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59138297	59138364	.	+	2	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000720;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000720;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:HG003_chrY_T0000720:4;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59138365	59158181	.	+	.	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000720;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000720;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:HG003_chrY_T0000720:5;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59158182	59158274	.	+	.	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000720;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000720;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:HG003_chrY_T0000720:6;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59158182	59158274	.	+	0	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000720;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000720;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:HG003_chrY_T0000720:5;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59158275	59160362	.	+	.	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000720;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000720;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:HG003_chrY_T0000720:6;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59160363	59162249	.	+	.	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000720;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000720;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:HG003_chrY_T0000720:7;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59160363	59160431	.	+	0	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000720;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000720;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:HG003_chrY_T0000720:6;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	59160429	59160431	.	+	0	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000720;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000720;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=stop_codon:HG003_chrY_T0000720;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59099815	59162249	1000	+	.	source_transcript=hg002_chrY_paternal_687.4;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.4,hg002_chrY_paternal_687.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000721;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_G0000274;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=HG003_chrY_T0000721;Name=VAMP7
HG003_chrY	CAT	exon	59099815	59099918	.	+	.	source_transcript=hg002_chrY_paternal_687.4;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.4,hg002_chrY_paternal_687.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000721;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000721;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=exon:HG003_chrY_T0000721:0;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59099919	59107928	.	+	.	source_transcript=hg002_chrY_paternal_687.4;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.4,hg002_chrY_paternal_687.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000721;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000721;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=intron:HG003_chrY_T0000721:0;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59107929	59108083	.	+	.	source_transcript=hg002_chrY_paternal_687.4;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.4,hg002_chrY_paternal_687.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000721;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000721;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=exon:HG003_chrY_T0000721:1;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59108084	59116585	.	+	.	source_transcript=hg002_chrY_paternal_687.4;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.4,hg002_chrY_paternal_687.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000721;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000721;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=intron:HG003_chrY_T0000721:1;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59116586	59116723	.	+	.	source_transcript=hg002_chrY_paternal_687.4;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.4,hg002_chrY_paternal_687.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000721;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000721;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=exon:HG003_chrY_T0000721:2;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59116724	59118972	.	+	.	source_transcript=hg002_chrY_paternal_687.4;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.4,hg002_chrY_paternal_687.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000721;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000721;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=intron:HG003_chrY_T0000721:2;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59118973	59119063	.	+	.	source_transcript=hg002_chrY_paternal_687.4;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.4,hg002_chrY_paternal_687.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000721;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000721;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=exon:HG003_chrY_T0000721:3;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59119064	59138296	.	+	.	source_transcript=hg002_chrY_paternal_687.4;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.4,hg002_chrY_paternal_687.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000721;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000721;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=intron:HG003_chrY_T0000721:3;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59138297	59138364	.	+	.	source_transcript=hg002_chrY_paternal_687.4;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.4,hg002_chrY_paternal_687.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000721;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000721;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=exon:HG003_chrY_T0000721:4;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59138365	59158181	.	+	.	source_transcript=hg002_chrY_paternal_687.4;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.4,hg002_chrY_paternal_687.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000721;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000721;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=intron:HG003_chrY_T0000721:4;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59158182	59158274	.	+	.	source_transcript=hg002_chrY_paternal_687.4;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.4,hg002_chrY_paternal_687.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000721;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000721;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=exon:HG003_chrY_T0000721:5;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59158275	59160362	.	+	.	source_transcript=hg002_chrY_paternal_687.4;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.4,hg002_chrY_paternal_687.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000721;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000721;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=intron:HG003_chrY_T0000721:5;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59160363	59162249	.	+	.	source_transcript=hg002_chrY_paternal_687.4;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.4,hg002_chrY_paternal_687.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000721;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000721;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=exon:HG003_chrY_T0000721:6;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59099815	59162249	1000	+	.	source_transcript=hg002_chrY_paternal_687.5;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.5,hg002_chrY_paternal_687.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000722;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_G0000274;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=HG003_chrY_T0000722;Name=VAMP7
HG003_chrY	CAT	exon	59099815	59099918	.	+	.	source_transcript=hg002_chrY_paternal_687.5;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.5,hg002_chrY_paternal_687.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000722;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000722;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=exon:HG003_chrY_T0000722:0;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59099919	59107928	.	+	.	source_transcript=hg002_chrY_paternal_687.5;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.5,hg002_chrY_paternal_687.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000722;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000722;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=intron:HG003_chrY_T0000722:0;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59107929	59108018	.	+	.	source_transcript=hg002_chrY_paternal_687.5;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.5,hg002_chrY_paternal_687.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000722;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000722;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=exon:HG003_chrY_T0000722:1;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59108019	59114096	.	+	.	source_transcript=hg002_chrY_paternal_687.5;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.5,hg002_chrY_paternal_687.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000722;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000722;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=intron:HG003_chrY_T0000722:1;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59114097	59114154	.	+	.	source_transcript=hg002_chrY_paternal_687.5;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.5,hg002_chrY_paternal_687.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000722;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000722;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=exon:HG003_chrY_T0000722:2;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59114155	59116585	.	+	.	source_transcript=hg002_chrY_paternal_687.5;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.5,hg002_chrY_paternal_687.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000722;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000722;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=intron:HG003_chrY_T0000722:2;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59116586	59116723	.	+	.	source_transcript=hg002_chrY_paternal_687.5;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.5,hg002_chrY_paternal_687.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000722;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000722;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=exon:HG003_chrY_T0000722:3;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59116724	59118972	.	+	.	source_transcript=hg002_chrY_paternal_687.5;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.5,hg002_chrY_paternal_687.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000722;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000722;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=intron:HG003_chrY_T0000722:3;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59118973	59119063	.	+	.	source_transcript=hg002_chrY_paternal_687.5;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.5,hg002_chrY_paternal_687.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000722;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000722;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=exon:HG003_chrY_T0000722:4;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59119064	59138296	.	+	.	source_transcript=hg002_chrY_paternal_687.5;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.5,hg002_chrY_paternal_687.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000722;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000722;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=intron:HG003_chrY_T0000722:4;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59138297	59138364	.	+	.	source_transcript=hg002_chrY_paternal_687.5;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.5,hg002_chrY_paternal_687.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000722;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000722;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=exon:HG003_chrY_T0000722:5;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59138365	59158181	.	+	.	source_transcript=hg002_chrY_paternal_687.5;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.5,hg002_chrY_paternal_687.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000722;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000722;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=intron:HG003_chrY_T0000722:5;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59158182	59158274	.	+	.	source_transcript=hg002_chrY_paternal_687.5;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.5,hg002_chrY_paternal_687.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000722;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000722;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=exon:HG003_chrY_T0000722:6;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59158275	59160362	.	+	.	source_transcript=hg002_chrY_paternal_687.5;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.5,hg002_chrY_paternal_687.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000722;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000722;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=intron:HG003_chrY_T0000722:6;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59160363	59162249	.	+	.	source_transcript=hg002_chrY_paternal_687.5;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.5,hg002_chrY_paternal_687.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000722;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000722;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=exon:HG003_chrY_T0000722:7;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	59216030	59229292	.	+	.	source_gene_common_name=IL9R;source_gene=hg002_chrY_paternal_691;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;gene_id=HG003_chrY_G0000275;gene_biotype=protein_coding;gene_name=IL9R;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000275;Name=IL9R
HG003_chrY	CAT	transcript	59216030	59229292	100	+	.	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000723;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_G0000275;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=HG003_chrY_T0000723;Name=IL9R
HG003_chrY	CAT	exon	59216030	59216265	.	+	.	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000723;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000723;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000723:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59216222	59216265	.	+	0	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000723;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000723;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000723:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	59216222	59216224	.	+	0	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000723;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000723;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=start_codon:HG003_chrY_T0000723;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59216266	59219885	.	+	.	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000723;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000723;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000723:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59219886	59219986	.	+	.	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000723;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000723;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000723:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59219886	59219986	.	+	1	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000723;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000723;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000723:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59219987	59221387	.	+	.	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000723;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000723;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000723:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59221388	59221501	.	+	.	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000723;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000723;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000723:2;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59221388	59221501	.	+	2	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000723;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000723;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000723:2;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59221502	59221930	.	+	.	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000723;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000723;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000723:2;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59221931	59222042	.	+	.	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000723;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000723;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000723:3;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59221931	59222042	.	+	2	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000723;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000723;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000723:3;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59222043	59222158	.	+	.	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000723;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000723;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000723:3;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59222159	59222337	.	+	.	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000723;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000723;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000723:4;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59222159	59222337	.	+	1	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000723;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000723;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000723:4;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59222338	59222901	.	+	.	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000723;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000723;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000723:4;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59222902	59223047	.	+	.	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000723;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000723;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000723:5;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59222902	59223047	.	+	2	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000723;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000723;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000723:5;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59223048	59223762	.	+	.	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000723;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000723;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000723:5;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59223763	59223961	.	+	.	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000723;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000723;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000723:6;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59223763	59223961	.	+	0	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000723;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000723;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000723:6;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59223962	59224564	.	+	.	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000723;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000723;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000723:6;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59224565	59224670	.	+	.	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000723;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000723;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000723:7;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59224565	59224670	.	+	2	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000723;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000723;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000723:7;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59224671	59228290	.	+	.	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000723;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000723;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000723:7;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59228291	59229292	.	+	.	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000723;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000723;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000723:8;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59228291	59228327	.	+	1	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000723;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000723;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000723:8;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	59228325	59228327	.	+	0	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000723;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000723;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=stop_codon:HG003_chrY_T0000723;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59216087	59229292	100	+	.	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000724;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_G0000275;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=HG003_chrY_T0000724;Name=IL9R
HG003_chrY	CAT	exon	59216087	59216265	.	+	.	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000724;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000724;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000724:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59216222	59216265	.	+	0	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000724;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000724;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000724:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	59216222	59216224	.	+	0	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000724;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000724;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=start_codon:HG003_chrY_T0000724;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59216266	59219885	.	+	.	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000724;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000724;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000724:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59219886	59219986	.	+	.	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000724;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000724;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000724:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59219886	59219986	.	+	1	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000724;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000724;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000724:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59219987	59221363	.	+	.	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000724;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000724;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000724:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59221364	59221501	.	+	.	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000724;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000724;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000724:2;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59221364	59221501	.	+	2	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000724;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000724;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000724:2;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59221502	59221930	.	+	.	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000724;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000724;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000724:2;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59221931	59222042	.	+	.	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000724;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000724;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000724:3;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59221931	59222042	.	+	2	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000724;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000724;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000724:3;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59222043	59222158	.	+	.	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000724;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000724;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000724:3;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59222159	59222337	.	+	.	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000724;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000724;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000724:4;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59222159	59222337	.	+	1	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000724;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000724;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000724:4;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59222338	59222901	.	+	.	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000724;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000724;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000724:4;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59222902	59223047	.	+	.	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000724;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000724;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000724:5;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59222902	59223047	.	+	2	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000724;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000724;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000724:5;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59223048	59223759	.	+	.	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000724;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000724;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000724:5;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59223760	59223961	.	+	.	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000724;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000724;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000724:6;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59223760	59223961	.	+	0	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000724;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000724;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000724:6;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59223962	59224564	.	+	.	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000724;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000724;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000724:6;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59224565	59224670	.	+	.	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000724;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000724;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000724:7;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59224565	59224670	.	+	2	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000724;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000724;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000724:7;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59224671	59226005	.	+	.	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000724;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000724;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000724:7;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59226006	59226090	.	+	.	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000724;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000724;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000724:8;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59226006	59226090	.	+	1	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000724;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000724;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000724:8;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59226091	59226380	.	+	.	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000724;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000724;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000724:8;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59226381	59226613	.	+	.	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000724;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000724;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000724:9;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59226381	59226613	.	+	0	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000724;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000724;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000724:9;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59226614	59228290	.	+	.	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000724;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000724;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000724:9;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59228291	59229292	.	+	.	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000724;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000724;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000724:10;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59228291	59228327	.	+	1	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000724;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000724;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000724:10;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	59228325	59228327	.	+	0	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000724;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000724;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=stop_codon:HG003_chrY_T0000724;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59216087	59229292	100	+	.	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000725;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_G0000275;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=HG003_chrY_T0000725;Name=IL9R
HG003_chrY	CAT	exon	59216087	59216265	.	+	.	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000725;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000725;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000725:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59216222	59216265	.	+	0	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000725;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000725;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000725:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	59216222	59216224	.	+	0	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000725;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000725;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=start_codon:HG003_chrY_T0000725;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59216266	59219885	.	+	.	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000725;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000725;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000725:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59219886	59219986	.	+	.	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000725;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000725;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000725:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59219886	59219986	.	+	1	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000725;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000725;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000725:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59219987	59221363	.	+	.	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000725;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000725;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000725:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59221364	59221501	.	+	.	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000725;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000725;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000725:2;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59221364	59221501	.	+	2	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000725;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000725;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000725:2;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59221502	59221930	.	+	.	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000725;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000725;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000725:2;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59221931	59222042	.	+	.	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000725;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000725;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000725:3;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59221931	59222042	.	+	2	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000725;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000725;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000725:3;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59222043	59222158	.	+	.	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000725;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000725;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000725:3;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59222159	59222337	.	+	.	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000725;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000725;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000725:4;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59222159	59222337	.	+	1	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000725;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000725;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000725:4;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59222338	59222901	.	+	.	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000725;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000725;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000725:4;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59222902	59223047	.	+	.	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000725;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000725;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000725:5;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59222902	59223047	.	+	2	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000725;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000725;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000725:5;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59223048	59223759	.	+	.	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000725;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000725;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000725:5;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59223760	59223961	.	+	.	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000725;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000725;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000725:6;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59223760	59223961	.	+	0	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000725;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000725;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000725:6;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59223962	59224564	.	+	.	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000725;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000725;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000725:6;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59224565	59224670	.	+	.	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000725;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000725;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000725:7;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59224565	59224670	.	+	2	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000725;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000725;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000725:7;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59224671	59228290	.	+	.	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000725;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000725;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000725:7;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59228291	59229292	.	+	.	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000725;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000725;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000725:8;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59228291	59228327	.	+	1	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000725;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000725;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000725:8;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	59228325	59228327	.	+	0	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000725;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000725;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=stop_codon:HG003_chrY_T0000725;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59216087	59229292	100	+	.	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_G0000275;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=HG003_chrY_T0000726;Name=IL9R
HG003_chrY	CAT	exon	59216087	59216265	.	+	.	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000726;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000726:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59216222	59216265	.	+	0	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000726;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000726:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	59216222	59216224	.	+	0	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000726;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=start_codon:HG003_chrY_T0000726;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59216266	59219885	.	+	.	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000726;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000726:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59219886	59219986	.	+	.	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000726;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000726:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59219886	59219986	.	+	1	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000726;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000726:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59219987	59221363	.	+	.	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000726;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000726:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59221364	59221501	.	+	.	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000726;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000726:2;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59221364	59221501	.	+	2	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000726;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000726:2;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59221502	59221930	.	+	.	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000726;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000726:2;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59221931	59222042	.	+	.	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000726;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000726:3;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59221931	59222042	.	+	2	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000726;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000726:3;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59222043	59222158	.	+	.	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000726;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000726:3;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59222159	59222337	.	+	.	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000726;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000726:4;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59222159	59222337	.	+	1	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000726;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000726:4;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59222338	59222901	.	+	.	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000726;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000726:4;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59222902	59223047	.	+	.	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000726;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000726:5;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59222902	59223047	.	+	2	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000726;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000726:5;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59223048	59223762	.	+	.	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000726;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000726:5;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59223763	59223961	.	+	.	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000726;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000726:6;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59223763	59223961	.	+	0	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000726;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000726:6;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59223962	59224564	.	+	.	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000726;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000726:6;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59224565	59224670	.	+	.	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000726;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000726:7;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59224565	59224670	.	+	2	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000726;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000726:7;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59224671	59226005	.	+	.	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000726;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000726:7;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59226006	59226090	.	+	.	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000726;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000726:8;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59226006	59226090	.	+	1	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000726;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000726:8;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59226091	59226380	.	+	.	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000726;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000726:8;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59226381	59226613	.	+	.	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000726;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000726:9;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59226381	59226613	.	+	0	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000726;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000726:9;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59226614	59228290	.	+	.	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000726;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000726:9;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59228291	59229292	.	+	.	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000726;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000726:10;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59228291	59228327	.	+	1	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000726;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000726:10;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	59228325	59228327	.	+	0	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000726;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=stop_codon:HG003_chrY_T0000726;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59216087	59229824	100	+	.	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_G0000275;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=HG003_chrY_T0000727;Name=IL9R
HG003_chrY	CAT	exon	59216087	59216265	.	+	.	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000727;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000727:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59216222	59216265	.	+	0	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000727;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000727:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	59216222	59216224	.	+	0	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000727;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=start_codon:HG003_chrY_T0000727;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59216266	59219885	.	+	.	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000727;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000727:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59219886	59219986	.	+	.	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000727;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000727:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59219886	59219986	.	+	1	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000727;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000727:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59219987	59221387	.	+	.	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000727;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000727:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59221388	59221501	.	+	.	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000727;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000727:2;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59221388	59221501	.	+	2	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000727;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000727:2;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59221502	59221930	.	+	.	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000727;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000727:2;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59221931	59222042	.	+	.	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000727;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000727:3;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59221931	59222042	.	+	2	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000727;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000727:3;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59222043	59222158	.	+	.	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000727;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000727:3;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59222159	59222337	.	+	.	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000727;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000727:4;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59222159	59222337	.	+	1	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000727;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000727:4;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59222338	59222901	.	+	.	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000727;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000727:4;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59222902	59223047	.	+	.	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000727;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000727:5;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59222902	59223047	.	+	2	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000727;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000727:5;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59223048	59223759	.	+	.	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000727;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000727:5;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59223760	59223961	.	+	.	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000727;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000727:6;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59223760	59223961	.	+	0	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000727;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000727:6;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59223962	59224564	.	+	.	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000727;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000727:6;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59224565	59224670	.	+	.	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000727;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000727:7;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59224565	59224670	.	+	2	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000727;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000727:7;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59224671	59226005	.	+	.	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000727;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000727:7;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59226006	59226090	.	+	.	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000727;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000727:8;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59226006	59226090	.	+	1	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000727;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000727:8;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59226091	59226380	.	+	.	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000727;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000727:8;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59226381	59229824	.	+	.	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000727;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000727:9;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59226381	59226617	.	+	0	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000727;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000727:9;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	59226615	59226617	.	+	0	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000727;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=stop_codon:HG003_chrY_T0000727;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59216093	59229292	100	+	.	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_G0000275;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=HG003_chrY_T0000728;Name=IL9R
HG003_chrY	CAT	exon	59216093	59216265	.	+	.	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000728;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000728:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59216222	59216265	.	+	0	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000728;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000728:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	59216222	59216224	.	+	0	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000728;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=start_codon:HG003_chrY_T0000728;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59216266	59219885	.	+	.	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000728;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000728:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59219886	59219986	.	+	.	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000728;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000728:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59219886	59219986	.	+	1	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000728;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000728:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59219987	59221363	.	+	.	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000728;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000728:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59221364	59221501	.	+	.	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000728;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000728:2;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59221364	59221501	.	+	2	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000728;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000728:2;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59221502	59221930	.	+	.	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000728;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000728:2;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59221931	59222042	.	+	.	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000728;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000728:3;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59221931	59222042	.	+	2	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000728;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000728:3;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59222043	59222158	.	+	.	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000728;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000728:3;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59222159	59222337	.	+	.	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000728;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000728:4;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59222159	59222337	.	+	1	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000728;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000728:4;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59222338	59222901	.	+	.	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000728;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000728:4;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59222902	59223047	.	+	.	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000728;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000728:5;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59222902	59223047	.	+	2	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000728;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000728:5;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59223048	59223762	.	+	.	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000728;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000728:5;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59223763	59223961	.	+	.	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000728;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000728:6;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59223763	59223961	.	+	0	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000728;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000728:6;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59223962	59224564	.	+	.	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000728;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000728:6;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59224565	59224670	.	+	.	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000728;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000728:7;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59224565	59224670	.	+	2	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000728;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000728:7;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59224671	59226005	.	+	.	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000728;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000728:7;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59226006	59226090	.	+	.	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000728;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000728:8;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59226006	59226090	.	+	1	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000728;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000728:8;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59226091	59228290	.	+	.	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000728;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000728:8;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59228291	59229292	.	+	.	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000728;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000728:9;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59228291	59228884	.	+	0	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000728;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000728:9;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	59228882	59228884	.	+	0	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000728;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=stop_codon:HG003_chrY_T0000728;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59216095	59229292	100	+	.	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000729;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_G0000275;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=HG003_chrY_T0000729;Name=IL9R
HG003_chrY	CAT	exon	59216095	59216265	.	+	.	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000729;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000729;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000729:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59216222	59216265	.	+	0	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000729;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000729;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000729:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	59216222	59216224	.	+	0	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000729;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000729;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=start_codon:HG003_chrY_T0000729;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59216266	59219885	.	+	.	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000729;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000729;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000729:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59219886	59219986	.	+	.	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000729;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000729;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000729:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59219886	59219986	.	+	1	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000729;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000729;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000729:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59219987	59221363	.	+	.	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000729;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000729;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000729:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59221364	59221501	.	+	.	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000729;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000729;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000729:2;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59221364	59221501	.	+	2	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000729;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000729;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000729:2;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59221502	59221930	.	+	.	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000729;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000729;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000729:2;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59221931	59222042	.	+	.	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000729;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000729;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000729:3;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59221931	59222042	.	+	2	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000729;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000729;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000729:3;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59222043	59222158	.	+	.	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000729;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000729;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000729:3;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59222159	59222337	.	+	.	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000729;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000729;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000729:4;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59222159	59222337	.	+	1	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000729;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000729;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000729:4;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59222338	59222901	.	+	.	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000729;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000729;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000729:4;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59222902	59223047	.	+	.	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000729;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000729;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000729:5;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59222902	59223047	.	+	2	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000729;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000729;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000729:5;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59223048	59223759	.	+	.	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000729;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000729;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000729:5;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59223760	59223961	.	+	.	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000729;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000729;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000729:6;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59223760	59223961	.	+	0	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000729;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000729;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000729:6;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59223962	59224564	.	+	.	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000729;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000729;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000729:6;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59224565	59224670	.	+	.	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000729;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000729;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000729:7;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59224565	59224670	.	+	2	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000729;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000729;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000729:7;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59224671	59226005	.	+	.	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000729;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000729;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000729:7;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59226006	59226090	.	+	.	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000729;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000729;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000729:8;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59226006	59226090	.	+	1	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000729;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000729;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000729:8;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59226091	59228290	.	+	.	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000729;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000729;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000729:8;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59228291	59229292	.	+	.	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000729;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000729;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000729:9;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59228291	59228884	.	+	0	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000729;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000729;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000729:9;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	59228882	59228884	.	+	0	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000729;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000729;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=stop_codon:HG003_chrY_T0000729;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59216095	59229292	100	+	.	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000730;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_G0000275;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=HG003_chrY_T0000730;Name=IL9R
HG003_chrY	CAT	exon	59216095	59216265	.	+	.	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000730;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000730;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000730:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59216222	59216265	.	+	0	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000730;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000730;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000730:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	59216222	59216224	.	+	0	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000730;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000730;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=start_codon:HG003_chrY_T0000730;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59216266	59219885	.	+	.	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000730;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000730;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000730:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59219886	59219986	.	+	.	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000730;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000730;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000730:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59219886	59219986	.	+	1	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000730;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000730;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000730:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59219987	59221387	.	+	.	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000730;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000730;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000730:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59221388	59221501	.	+	.	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000730;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000730;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000730:2;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59221388	59221501	.	+	2	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000730;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000730;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000730:2;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59221502	59221930	.	+	.	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000730;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000730;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000730:2;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59221931	59222042	.	+	.	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000730;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000730;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000730:3;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59221931	59222042	.	+	2	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000730;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000730;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000730:3;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59222043	59222158	.	+	.	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000730;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000730;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000730:3;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59222159	59222337	.	+	.	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000730;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000730;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000730:4;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59222159	59222337	.	+	1	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000730;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000730;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000730:4;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59222338	59222901	.	+	.	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000730;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000730;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000730:4;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59222902	59223047	.	+	.	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000730;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000730;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000730:5;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59222902	59223047	.	+	2	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000730;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000730;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000730:5;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59223048	59223759	.	+	.	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000730;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000730;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000730:5;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59223760	59223961	.	+	.	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000730;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000730;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000730:6;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59223760	59223961	.	+	0	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000730;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000730;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000730:6;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59223962	59224564	.	+	.	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000730;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000730;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000730:6;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59224565	59224670	.	+	.	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000730;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000730;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000730:7;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59224565	59224670	.	+	2	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000730;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000730;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000730:7;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59224671	59226005	.	+	.	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000730;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000730;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000730:7;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59226006	59226090	.	+	.	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000730;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000730;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000730:8;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59226006	59226090	.	+	1	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000730;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000730;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000730:8;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59226091	59228290	.	+	.	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000730;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000730;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000730:8;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59228291	59229292	.	+	.	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000730;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000730;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000730:9;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59228291	59228884	.	+	0	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000730;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000730;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000730:9;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	59228882	59228884	.	+	0	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000730;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000730;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=stop_codon:HG003_chrY_T0000730;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59216097	59229292	100	+	.	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000731;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_G0000275;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=HG003_chrY_T0000731;Name=IL9R
HG003_chrY	CAT	exon	59216097	59216265	.	+	.	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000731;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000731;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000731:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59216266	59219807	.	+	.	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000731;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000731;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000731:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59219808	59221501	.	+	.	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000731;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000731;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000731:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59221351	59221501	.	+	0	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000731;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000731;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000731:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	59221351	59221353	.	+	0	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000731;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000731;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=start_codon:HG003_chrY_T0000731;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59221502	59221930	.	+	.	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000731;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000731;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000731:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59221931	59222042	.	+	.	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000731;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000731;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000731:2;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59221931	59222042	.	+	2	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000731;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000731;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000731:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59222043	59222158	.	+	.	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000731;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000731;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000731:2;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59222159	59222337	.	+	.	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000731;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000731;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000731:3;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59222159	59222337	.	+	1	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000731;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000731;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000731:2;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59222338	59222901	.	+	.	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000731;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000731;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000731:3;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59222902	59223047	.	+	.	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000731;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000731;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000731:4;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59222902	59223047	.	+	2	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000731;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000731;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000731:3;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59223048	59223759	.	+	.	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000731;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000731;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000731:4;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59223760	59223961	.	+	.	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000731;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000731;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000731:5;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59223760	59223961	.	+	0	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000731;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000731;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000731:4;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59223962	59224564	.	+	.	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000731;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000731;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000731:5;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59224565	59224670	.	+	.	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000731;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000731;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000731:6;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59224565	59224670	.	+	2	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000731;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000731;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000731:5;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59224671	59226005	.	+	.	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000731;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000731;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000731:6;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59226006	59226090	.	+	.	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000731;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000731;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000731:7;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59226006	59226090	.	+	1	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000731;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000731;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000731:6;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59226091	59228290	.	+	.	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000731;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000731;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000731:7;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59228291	59229292	.	+	.	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000731;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000731;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000731:8;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59228291	59228884	.	+	0	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000731;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000731;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000731:7;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	59228882	59228884	.	+	0	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000731;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000731;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=stop_codon:HG003_chrY_T0000731;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59216100	59229292	100	+	.	source_transcript=hg002_chrY_paternal_691.10;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.10;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.10,hg002_chrY_paternal_691.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000732;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_G0000275;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=HG003_chrY_T0000732;Name=IL9R
HG003_chrY	CAT	exon	59216100	59216265	.	+	.	source_transcript=hg002_chrY_paternal_691.10;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.10,hg002_chrY_paternal_691.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000732;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000732;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000732:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59216238	59216265	.	+	0	source_transcript=hg002_chrY_paternal_691.10;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.10,hg002_chrY_paternal_691.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000732;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000732;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000732:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	59216238	59216240	.	+	0	source_transcript=hg002_chrY_paternal_691.10;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.10,hg002_chrY_paternal_691.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000732;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000732;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=start_codon:HG003_chrY_T0000732;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59216266	59222901	.	+	.	source_transcript=hg002_chrY_paternal_691.10;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.10,hg002_chrY_paternal_691.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000732;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000732;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000732:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59222902	59223047	.	+	.	source_transcript=hg002_chrY_paternal_691.10;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.10,hg002_chrY_paternal_691.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000732;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000732;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000732:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59222902	59223047	.	+	2	source_transcript=hg002_chrY_paternal_691.10;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.10,hg002_chrY_paternal_691.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000732;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000732;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000732:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59223048	59223759	.	+	.	source_transcript=hg002_chrY_paternal_691.10;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.10,hg002_chrY_paternal_691.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000732;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000732;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000732:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59223760	59223961	.	+	.	source_transcript=hg002_chrY_paternal_691.10;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.10,hg002_chrY_paternal_691.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000732;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000732;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000732:2;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59223760	59223961	.	+	0	source_transcript=hg002_chrY_paternal_691.10;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.10,hg002_chrY_paternal_691.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000732;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000732;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000732:2;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59223962	59224564	.	+	.	source_transcript=hg002_chrY_paternal_691.10;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.10,hg002_chrY_paternal_691.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000732;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000732;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000732:2;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59224565	59224670	.	+	.	source_transcript=hg002_chrY_paternal_691.10;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.10,hg002_chrY_paternal_691.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000732;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000732;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000732:3;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59224565	59224670	.	+	2	source_transcript=hg002_chrY_paternal_691.10;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.10,hg002_chrY_paternal_691.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000732;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000732;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000732:3;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59224671	59226005	.	+	.	source_transcript=hg002_chrY_paternal_691.10;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.10,hg002_chrY_paternal_691.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000732;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000732;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000732:3;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59226006	59226090	.	+	.	source_transcript=hg002_chrY_paternal_691.10;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.10,hg002_chrY_paternal_691.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000732;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000732;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000732:4;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59226006	59226090	.	+	1	source_transcript=hg002_chrY_paternal_691.10;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.10,hg002_chrY_paternal_691.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000732;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000732;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000732:4;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59226091	59228290	.	+	.	source_transcript=hg002_chrY_paternal_691.10;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.10,hg002_chrY_paternal_691.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000732;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000732;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000732:4;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59228291	59229292	.	+	.	source_transcript=hg002_chrY_paternal_691.10;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.10,hg002_chrY_paternal_691.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000732;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000732;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000732:5;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59228291	59228884	.	+	0	source_transcript=hg002_chrY_paternal_691.10;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.10,hg002_chrY_paternal_691.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000732;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000732;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000732:5;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	59228882	59228884	.	+	0	source_transcript=hg002_chrY_paternal_691.10;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.10,hg002_chrY_paternal_691.10;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000732;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000732;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=stop_codon:HG003_chrY_T0000732;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59216174	59229292	100	+	.	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000733;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_G0000275;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=HG003_chrY_T0000733;Name=IL9R
HG003_chrY	CAT	exon	59216174	59216265	.	+	.	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000733;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000733;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000733:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59216238	59216265	.	+	0	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000733;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000733;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000733:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	59216238	59216240	.	+	0	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000733;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000733;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=start_codon:HG003_chrY_T0000733;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59216266	59221387	.	+	.	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000733;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000733;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000733:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59221388	59221501	.	+	.	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000733;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000733;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000733:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59221388	59221501	.	+	2	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000733;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000733;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000733:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59221502	59221930	.	+	.	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000733;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000733;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000733:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59221931	59222042	.	+	.	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000733;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000733;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000733:2;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59221931	59222042	.	+	2	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000733;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000733;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000733:2;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59222043	59222158	.	+	.	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000733;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000733;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000733:2;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59222159	59222337	.	+	.	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000733;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000733;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000733:3;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59222159	59222337	.	+	1	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000733;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000733;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000733:3;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59222338	59222901	.	+	.	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000733;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000733;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000733:3;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59222902	59223047	.	+	.	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000733;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000733;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000733:4;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59222902	59223047	.	+	2	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000733;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000733;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000733:4;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59223048	59223759	.	+	.	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000733;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000733;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000733:4;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59223760	59223961	.	+	.	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000733;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000733;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000733:5;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59223760	59223961	.	+	0	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000733;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000733;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000733:5;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59223962	59224564	.	+	.	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000733;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000733;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000733:5;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59224565	59224670	.	+	.	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000733;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000733;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000733:6;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59224565	59224670	.	+	2	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000733;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000733;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000733:6;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59224671	59226005	.	+	.	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000733;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000733;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000733:6;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59226006	59226090	.	+	.	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000733;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000733;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000733:7;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59226006	59226090	.	+	1	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000733;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000733;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000733:7;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59226091	59228290	.	+	.	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000733;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000733;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000733:7;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59228291	59229292	.	+	.	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000733;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000733;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000733:8;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59228291	59228884	.	+	0	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000733;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000733;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000733:8;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	59228882	59228884	.	+	0	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000733;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000733;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=stop_codon:HG003_chrY_T0000733;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59216174	59229292	100	+	.	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_G0000275;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=HG003_chrY_T0000734;Name=IL9R
HG003_chrY	CAT	exon	59216174	59216265	.	+	.	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000734;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000734:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59216222	59216265	.	+	0	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000734;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000734:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	59216222	59216224	.	+	0	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000734;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=start_codon:HG003_chrY_T0000734;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59216266	59219885	.	+	.	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000734;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000734:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59219886	59219986	.	+	.	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000734;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000734:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59219886	59219986	.	+	1	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000734;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000734:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59219987	59221363	.	+	.	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000734;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000734:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59221364	59221501	.	+	.	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000734;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000734:2;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59221364	59221501	.	+	2	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000734;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000734:2;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59221502	59221930	.	+	.	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000734;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000734:2;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59221931	59222042	.	+	.	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000734;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000734:3;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59221931	59222042	.	+	2	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000734;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000734:3;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59222043	59222165	.	+	.	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000734;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000734:3;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59222166	59222337	.	+	.	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000734;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000734:4;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59222166	59222337	.	+	1	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000734;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000734:4;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59222338	59222930	.	+	.	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000734;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000734:4;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59222931	59223047	.	+	.	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000734;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000734:5;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59222931	59223047	.	+	0	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000734;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000734:5;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59223048	59223759	.	+	.	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000734;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000734:5;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59223760	59223961	.	+	.	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000734;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000734:6;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59223760	59223961	.	+	0	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000734;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000734:6;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59223962	59224564	.	+	.	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000734;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000734:6;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59224565	59224670	.	+	.	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000734;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000734:7;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59224565	59224670	.	+	2	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000734;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000734:7;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59224671	59228290	.	+	.	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000734;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000734:7;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59228291	59229292	.	+	.	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000734;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000734:8;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59228291	59228327	.	+	1	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000734;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000734:8;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	59228325	59228327	.	+	0	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000734;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=stop_codon:HG003_chrY_T0000734;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59224287	59229292	100	+	.	source_transcript=hg002_chrY_paternal_691.13;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.13;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.13,hg002_chrY_paternal_691.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000735;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_G0000275;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=HG003_chrY_T0000735;Name=IL9R
HG003_chrY	CAT	exon	59224287	59224499	.	+	.	source_transcript=hg002_chrY_paternal_691.13;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.13,hg002_chrY_paternal_691.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000735;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000735;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000735:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59224315	59224499	.	+	0	source_transcript=hg002_chrY_paternal_691.13;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.13,hg002_chrY_paternal_691.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000735;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000735;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000735:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	59224315	59224317	.	+	0	source_transcript=hg002_chrY_paternal_691.13;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.13,hg002_chrY_paternal_691.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000735;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000735;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=start_codon:HG003_chrY_T0000735;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59224500	59226005	.	+	.	source_transcript=hg002_chrY_paternal_691.13;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.13,hg002_chrY_paternal_691.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000735;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000735;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000735:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59226006	59226090	.	+	.	source_transcript=hg002_chrY_paternal_691.13;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.13,hg002_chrY_paternal_691.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000735;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000735;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000735:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59226006	59226090	.	+	1	source_transcript=hg002_chrY_paternal_691.13;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.13,hg002_chrY_paternal_691.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000735;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000735;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000735:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59226091	59228290	.	+	.	source_transcript=hg002_chrY_paternal_691.13;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.13,hg002_chrY_paternal_691.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000735;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000735;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:HG003_chrY_T0000735:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59228291	59229292	.	+	.	source_transcript=hg002_chrY_paternal_691.13;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.13,hg002_chrY_paternal_691.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000735;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000735;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:HG003_chrY_T0000735:2;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59228291	59228884	.	+	0	source_transcript=hg002_chrY_paternal_691.13;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.13,hg002_chrY_paternal_691.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000735;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000735;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:HG003_chrY_T0000735:2;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	59228882	59228884	.	+	0	source_transcript=hg002_chrY_paternal_691.13;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.13,hg002_chrY_paternal_691.13;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000735;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000735;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=stop_codon:HG003_chrY_T0000735;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	gene	1772	21812	.	-	.	source_gene_common_name=RBMY1F;source_gene=hg002_chrY_paternal_502;alternative_source_transcripts=hg002_chrY_paternal_502.4;gene_id=HG003_chrY_G0000276;gene_biotype=protein_coding;gene_name=RBMY1F;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000276;Name=RBMY1F
HG003_chrY_random0000132	CAT	transcript	1772	21812	100	-	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_G0000276;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=HG003_chrY_T0000736;Name=RBMY1F
HG003_chrY_random0000132	CAT	exon	1772	1943	.	-	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000736;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000736:0;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	1933	1943	.	-	2	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000736;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000736:0;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	stop_codon	1933	1935	.	-	0	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000736;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=stop_codon:HG003_chrY_T0000736;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	1944	4536	.	-	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000736;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000736:0;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	4537	4683	.	-	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000736;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000736:1;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	4537	4683	.	-	2	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000736;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000736:1;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	4684	8416	.	-	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000736;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000736:1;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	8417	8505	.	-	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000736;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000736:2;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	8417	8505	.	-	1	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000736;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000736:2;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	8506	8591	.	-	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000736;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000736:2;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	8592	8702	.	-	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000736;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000736:3;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	8592	8702	.	-	1	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000736;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000736:3;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	8703	9625	.	-	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000736;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000736:3;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	9626	9736	.	-	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000736;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000736:4;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	9626	9736	.	-	1	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000736;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000736:4;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	9737	10170	.	-	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000736;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000736:4;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	10171	10281	.	-	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000736;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000736:5;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	10171	10281	.	-	1	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000736;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000736:5;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	10282	10721	.	-	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000736;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000736:5;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	10722	10832	.	-	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000736;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000736:6;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	10722	10832	.	-	1	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000736;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000736:6;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	10833	11787	.	-	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000736;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000736:6;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	11788	11902	.	-	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000736;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000736:7;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	11788	11902	.	-	2	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000736;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000736:7;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	11903	13912	.	-	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000736;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000736:7;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	13913	14065	.	-	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000736;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000736:8;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	13913	14065	.	-	2	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000736;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000736:8;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	14066	15980	.	-	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000736;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000736:8;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	15981	16158	.	-	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000736;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000736:9;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	15981	16158	.	-	0	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000736;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000736:9;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	16159	19181	.	-	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000736;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000736:9;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	19182	19285	.	-	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000736;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000736:10;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	19182	19285	.	-	2	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000736;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000736:10;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	19286	19749	.	-	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000736;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000736:10;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	19750	19862	.	-	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000736;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000736:11;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	19750	19858	.	-	0	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000736;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000736:11;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	start_codon	19856	19858	.	-	0	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000736;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=start_codon:HG003_chrY_T0000736;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	19863	21723	.	-	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000736;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000736:11;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	21724	21812	.	-	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000736;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000736:12;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	transcript	1772	21812	100	-	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000737;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_G0000276;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=HG003_chrY_T0000737;Name=RBMY1F
HG003_chrY_random0000132	CAT	exon	1772	1943	.	-	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000737;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000737;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000737:0;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	1933	1943	.	-	2	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000737;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000737;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000737:0;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	stop_codon	1933	1935	.	-	0	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000737;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000737;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=stop_codon:HG003_chrY_T0000737;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	1944	4536	.	-	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000737;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000737;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000737:0;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	4537	4683	.	-	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000737;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000737;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000737:1;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	4537	4683	.	-	2	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000737;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000737;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000737:1;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	4684	8416	.	-	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000737;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000737;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000737:1;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	8417	8505	.	-	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000737;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000737;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000737:2;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	8417	8505	.	-	1	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000737;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000737;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000737:2;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	8506	9625	.	-	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000737;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000737;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000737:2;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	9626	9736	.	-	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000737;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000737;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000737:3;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	9626	9736	.	-	1	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000737;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000737;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000737:3;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	9737	10170	.	-	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000737;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000737;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000737:3;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	10171	10281	.	-	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000737;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000737;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000737:4;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	10171	10281	.	-	1	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000737;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000737;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000737:4;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	10282	10721	.	-	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000737;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000737;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000737:4;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	10722	10832	.	-	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000737;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000737;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000737:5;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	10722	10832	.	-	1	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000737;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000737;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000737:5;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	10833	11787	.	-	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000737;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000737;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000737:5;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	11788	11902	.	-	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000737;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000737;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000737:6;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	11788	11902	.	-	2	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000737;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000737;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000737:6;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	11903	13912	.	-	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000737;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000737;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000737:6;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	13913	14065	.	-	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000737;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000737;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000737:7;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	13913	14065	.	-	2	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000737;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000737;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000737:7;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	14066	15980	.	-	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000737;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000737;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000737:7;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	15981	16158	.	-	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000737;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000737;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000737:8;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	15981	16158	.	-	0	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000737;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000737;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000737:8;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	16159	19181	.	-	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000737;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000737;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000737:8;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	19182	19285	.	-	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000737;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000737;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000737:9;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	19182	19285	.	-	2	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000737;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000737;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000737:9;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	19286	19749	.	-	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000737;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000737;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000737:9;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	19750	19862	.	-	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000737;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000737;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000737:10;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	19750	19858	.	-	0	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000737;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000737;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000737:10;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	start_codon	19856	19858	.	-	0	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000737;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000737;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=start_codon:HG003_chrY_T0000737;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	19863	21723	.	-	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000737;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000737;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000737:10;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	21724	21812	.	-	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000737;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000737;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000737:11;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	transcript	1772	21812	100	-	.	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000738;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_G0000276;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=HG003_chrY_T0000738;Name=RBMY1F
HG003_chrY_random0000132	CAT	exon	1772	1943	.	-	.	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000738;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000738;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000738:0;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	1933	1943	.	-	2	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000738;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000738;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000738:0;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	stop_codon	1933	1935	.	-	0	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000738;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000738;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=stop_codon:HG003_chrY_T0000738;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	1944	8416	.	-	.	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000738;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000738;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000738:0;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	8417	8505	.	-	.	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000738;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000738;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000738:1;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	8417	8505	.	-	1	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000738;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000738;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000738:1;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	8506	9625	.	-	.	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000738;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000738;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000738:1;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	9626	9736	.	-	.	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000738;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000738;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000738:2;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	9626	9736	.	-	1	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000738;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000738;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000738:2;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	9737	10170	.	-	.	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000738;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000738;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000738:2;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	10171	10281	.	-	.	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000738;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000738;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000738:3;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	10171	10281	.	-	1	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000738;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000738;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000738:3;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	10282	10721	.	-	.	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000738;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000738;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000738:3;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	10722	10832	.	-	.	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000738;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000738;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000738:4;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	10722	10832	.	-	1	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000738;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000738;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000738:4;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	10833	11787	.	-	.	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000738;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000738;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000738:4;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	11788	11902	.	-	.	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000738;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000738;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000738:5;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	11788	11902	.	-	2	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000738;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000738;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000738:5;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	11903	13912	.	-	.	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000738;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000738;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000738:5;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	13913	14065	.	-	.	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000738;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000738;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000738:6;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	13913	14065	.	-	2	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000738;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000738;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000738:6;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	14066	15980	.	-	.	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000738;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000738;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000738:6;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	15981	16158	.	-	.	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000738;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000738;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000738:7;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	15981	16158	.	-	0	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000738;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000738;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000738:7;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	16159	19181	.	-	.	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000738;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000738;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000738:7;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	19182	19285	.	-	.	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000738;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000738;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000738:8;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	19182	19285	.	-	2	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000738;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000738;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000738:8;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	19286	19749	.	-	.	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000738;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000738;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000738:8;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	19750	19862	.	-	.	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000738;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000738;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000738:9;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	19750	19858	.	-	0	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000738;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000738;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000738:9;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	start_codon	19856	19858	.	-	0	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000738;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000738;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=start_codon:HG003_chrY_T0000738;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	19863	21723	.	-	.	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000738;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000738;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000738:9;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	21724	21812	.	-	.	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000738;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000738;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000738:10;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	transcript	7429	21812	100	-	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000739;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_G0000276;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=HG003_chrY_T0000739;Name=RBMY1F
HG003_chrY_random0000132	CAT	exon	7429	8005	.	-	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000739;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000739;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000739:0;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	7933	8005	.	-	1	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000739;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000739;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000739:0;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	stop_codon	7933	7935	.	-	0	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000739;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000739;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=stop_codon:HG003_chrY_T0000739;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	8006	8421	.	-	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000739;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000739;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000739:0;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	8422	8505	.	-	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000739;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000739;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000739:1;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	8422	8505	.	-	1	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000739;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000739;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000739:1;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	8506	8591	.	-	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000739;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000739;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000739:1;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	8592	8702	.	-	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000739;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000739;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000739:2;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	8592	8702	.	-	1	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000739;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000739;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000739:2;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	8703	9625	.	-	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000739;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000739;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000739:2;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	9626	9736	.	-	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000739;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000739;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000739:3;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	9626	9736	.	-	1	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000739;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000739;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000739:3;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	9737	10170	.	-	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000739;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000739;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000739:3;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	10171	10281	.	-	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000739;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000739;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000739:4;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	10171	10281	.	-	1	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000739;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000739;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000739:4;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	10282	10721	.	-	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000739;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000739;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000739:4;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	10722	10832	.	-	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000739;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000739;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000739:5;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	10722	10832	.	-	1	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000739;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000739;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000739:5;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	10833	11787	.	-	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000739;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000739;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000739:5;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	11788	11902	.	-	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000739;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000739;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000739:6;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	11788	11902	.	-	2	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000739;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000739;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000739:6;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	11903	13912	.	-	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000739;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000739;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000739:6;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	13913	14065	.	-	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000739;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000739;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000739:7;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	13913	14065	.	-	2	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000739;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000739;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000739:7;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	14066	15980	.	-	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000739;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000739;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000739:7;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	15981	16158	.	-	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000739;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000739;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000739:8;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	15981	16158	.	-	0	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000739;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000739;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000739:8;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	16159	19181	.	-	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000739;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000739;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000739:8;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	19182	19285	.	-	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000739;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000739;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000739:9;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	19182	19285	.	-	2	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000739;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000739;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000739:9;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	19286	19749	.	-	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000739;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000739;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000739:9;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	19750	19862	.	-	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000739;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000739;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000739:10;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	19750	19858	.	-	0	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000739;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000739;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000739:10;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	start_codon	19856	19858	.	-	0	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000739;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000739;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=start_codon:HG003_chrY_T0000739;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	19863	21723	.	-	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000739;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000739;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000739:10;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	21724	21812	.	-	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000739;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000739;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000739:11;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	transcript	7429	21812	100	-	.	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000740;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_G0000276;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=HG003_chrY_T0000740;Name=RBMY1F
HG003_chrY_random0000132	CAT	exon	7429	8005	.	-	.	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000740;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000740;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000740:0;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	7707	8005	.	-	2	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000740;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000740;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000740:0;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	stop_codon	7707	7709	.	-	0	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000740;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000740;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=stop_codon:HG003_chrY_T0000740;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	8006	8416	.	-	.	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000740;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000740;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000740:0;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	8417	8505	.	-	.	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000740;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000740;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000740:1;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	8417	8505	.	-	1	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000740;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000740;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000740:1;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	8506	9625	.	-	.	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000740;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000740;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000740:1;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	9626	9736	.	-	.	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000740;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000740;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000740:2;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	9626	9736	.	-	1	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000740;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000740;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000740:2;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	9737	10170	.	-	.	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000740;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000740;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000740:2;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	10171	10281	.	-	.	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000740;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000740;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000740:3;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	10171	10281	.	-	1	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000740;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000740;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000740:3;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	10282	10721	.	-	.	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000740;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000740;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000740:3;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	10722	10832	.	-	.	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000740;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000740;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000740:4;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	10722	10832	.	-	1	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000740;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000740;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000740:4;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	10833	11787	.	-	.	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000740;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000740;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000740:4;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	11788	11902	.	-	.	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000740;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000740;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000740:5;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	11788	11902	.	-	2	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000740;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000740;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000740:5;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	11903	13912	.	-	.	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000740;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000740;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000740:5;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	13913	14065	.	-	.	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000740;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000740;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000740:6;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	13913	14065	.	-	2	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000740;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000740;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000740:6;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	14066	15980	.	-	.	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000740;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000740;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000740:6;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	15981	16158	.	-	.	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000740;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000740;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000740:7;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	15981	16158	.	-	0	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000740;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000740;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000740:7;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	16159	19181	.	-	.	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000740;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000740;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000740:7;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	19182	19285	.	-	.	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000740;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000740;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000740:8;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	19182	19285	.	-	2	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000740;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000740;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000740:8;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	19286	19749	.	-	.	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000740;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000740;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000740:8;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	19750	19862	.	-	.	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000740;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000740;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000740:9;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	19750	19858	.	-	0	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000740;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000740;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000740:9;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	start_codon	19856	19858	.	-	0	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000740;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000740;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=start_codon:HG003_chrY_T0000740;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	19863	21723	.	-	.	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000740;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000740;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000740:9;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	21724	21812	.	-	.	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000740;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000740;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000740:10;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	transcript	7429	21812	100	-	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_G0000276;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=HG003_chrY_T0000741;Name=RBMY1F
HG003_chrY_random0000132	CAT	exon	7429	8005	.	-	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000741;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000741:0;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	7707	8005	.	-	2	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000741;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000741:0;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	stop_codon	7707	7709	.	-	0	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000741;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=stop_codon:HG003_chrY_T0000741;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	8006	8416	.	-	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000741;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000741:0;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	8417	8505	.	-	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000741;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000741:1;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	8417	8505	.	-	1	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000741;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000741:1;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	8506	8591	.	-	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000741;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000741:1;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	8592	8702	.	-	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000741;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000741:2;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	8592	8702	.	-	1	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000741;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000741:2;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	8703	9625	.	-	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000741;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000741:2;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	9626	9736	.	-	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000741;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000741:3;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	9626	9736	.	-	1	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000741;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000741:3;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	9737	10170	.	-	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000741;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000741:3;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	10171	10281	.	-	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000741;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000741:4;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	10171	10281	.	-	1	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000741;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000741:4;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	10282	10721	.	-	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000741;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000741:4;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	10722	10832	.	-	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000741;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000741:5;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	10722	10832	.	-	1	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000741;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000741:5;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	10833	11787	.	-	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000741;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000741:5;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	11788	11902	.	-	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000741;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000741:6;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	11788	11902	.	-	2	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000741;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000741:6;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	11903	13912	.	-	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000741;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000741:6;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	13913	14065	.	-	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000741;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000741:7;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	13913	14065	.	-	2	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000741;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000741:7;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	14066	15980	.	-	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000741;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000741:7;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	15981	16158	.	-	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000741;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000741:8;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	15981	16158	.	-	0	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000741;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000741:8;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	16159	19181	.	-	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000741;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000741:8;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	19182	19285	.	-	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000741;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000741:9;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	19182	19285	.	-	2	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000741;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000741:9;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	19286	19749	.	-	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000741;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000741:9;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	19750	19862	.	-	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000741;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000741:10;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	19750	19858	.	-	0	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000741;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0000741:10;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	start_codon	19856	19858	.	-	0	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000741;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=start_codon:HG003_chrY_T0000741;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	19863	21723	.	-	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000741;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:HG003_chrY_T0000741:10;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	21724	21812	.	-	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000741;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:HG003_chrY_T0000741:11;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	gene	135787	137865	.	-	.	source_gene_common_name=TTTY5;source_gene=hg002_chrY_paternal_497;alternative_source_transcripts=hg002_chrY_paternal_497.1,hg002_chrY_paternal_497.1;gene_id=HG003_chrY_G0000277;gene_biotype=lncRNA;gene_name=TTTY5;gene_sources=liftoff;ID=HG003_chrY_G0000277;Name=TTTY5
HG003_chrY_random0000132	CAT	transcript	135787	137865	1000	-	.	source_transcript=hg002_chrY_paternal_497.1;source_transcript_name=hg002_chrY_paternal_497.1;source_gene=hg002_chrY_paternal_497;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_497;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_497.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_497.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY5;alternative_source_transcripts=hg002_chrY_paternal_497.1,hg002_chrY_paternal_497.1;transcript_id=HG003_chrY_T0000742;gene_id=HG003_chrY_G0000277;Parent=HG003_chrY_G0000277;transcript_name=hg002_chrY_paternal_497.1;gene_name=TTTY5;ID=HG003_chrY_T0000742;Name=TTTY5
HG003_chrY_random0000132	CAT	exon	135787	136777	.	-	.	source_transcript=hg002_chrY_paternal_497.1;source_transcript_name=hg002_chrY_paternal_497.1;source_gene=hg002_chrY_paternal_497;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_497;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_497.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_497.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY5;alternative_source_transcripts=hg002_chrY_paternal_497.1,hg002_chrY_paternal_497.1;transcript_id=HG003_chrY_T0000742;gene_id=HG003_chrY_G0000277;Parent=HG003_chrY_T0000742;transcript_name=hg002_chrY_paternal_497.1;gene_name=TTTY5;ID=exon:HG003_chrY_T0000742:0;Name=TTTY5;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	136778	137294	.	-	.	source_transcript=hg002_chrY_paternal_497.1;source_transcript_name=hg002_chrY_paternal_497.1;source_gene=hg002_chrY_paternal_497;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_497;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_497.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_497.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY5;alternative_source_transcripts=hg002_chrY_paternal_497.1,hg002_chrY_paternal_497.1;transcript_id=HG003_chrY_T0000742;gene_id=HG003_chrY_G0000277;Parent=HG003_chrY_T0000742;transcript_name=hg002_chrY_paternal_497.1;gene_name=TTTY5;ID=intron:HG003_chrY_T0000742:0;Name=TTTY5;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	137295	137865	.	-	.	source_transcript=hg002_chrY_paternal_497.1;source_transcript_name=hg002_chrY_paternal_497.1;source_gene=hg002_chrY_paternal_497;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_497;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_497.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_497.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY5;alternative_source_transcripts=hg002_chrY_paternal_497.1,hg002_chrY_paternal_497.1;transcript_id=HG003_chrY_T0000742;gene_id=HG003_chrY_G0000277;Parent=HG003_chrY_T0000742;transcript_name=hg002_chrY_paternal_497.1;gene_name=TTTY5;ID=exon:HG003_chrY_T0000742:1;Name=TTTY5;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	gene	147854	155200	.	+	.	source_gene_common_name=RBMY2FP;source_gene=hg002_chrY_paternal_495;alternative_source_transcripts=hg002_chrY_paternal_495.1,hg002_chrY_paternal_495.1;gene_id=HG003_chrY_G0000278;gene_biotype=transcribed_pseudogene;gene_name=RBMY2FP;gene_sources=liftoff;ID=HG003_chrY_G0000278;Name=RBMY2FP
HG003_chrY_random0000132	CAT	transcript	147854	155200	1000	+	.	source_transcript=hg002_chrY_paternal_495.1;source_transcript_name=hg002_chrY_paternal_495.1;source_gene=hg002_chrY_paternal_495;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_495;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_495.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_495.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;alternative_source_transcripts=hg002_chrY_paternal_495.1,hg002_chrY_paternal_495.1;transcript_id=HG003_chrY_T0000743;gene_id=HG003_chrY_G0000278;Parent=HG003_chrY_G0000278;transcript_name=hg002_chrY_paternal_495.1;gene_name=RBMY2FP;ID=HG003_chrY_T0000743;Name=RBMY2FP
HG003_chrY_random0000132	CAT	exon	147854	147965	.	+	.	source_transcript=hg002_chrY_paternal_495.1;source_transcript_name=hg002_chrY_paternal_495.1;source_gene=hg002_chrY_paternal_495;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_495;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_495.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_495.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;alternative_source_transcripts=hg002_chrY_paternal_495.1,hg002_chrY_paternal_495.1;transcript_id=HG003_chrY_T0000743;gene_id=HG003_chrY_G0000278;Parent=HG003_chrY_T0000743;transcript_name=hg002_chrY_paternal_495.1;gene_name=RBMY2FP;ID=exon:HG003_chrY_T0000743:0;Name=RBMY2FP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	147966	149854	.	+	.	source_transcript=hg002_chrY_paternal_495.1;source_transcript_name=hg002_chrY_paternal_495.1;source_gene=hg002_chrY_paternal_495;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_495;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_495.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_495.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;alternative_source_transcripts=hg002_chrY_paternal_495.1,hg002_chrY_paternal_495.1;transcript_id=HG003_chrY_T0000743;gene_id=HG003_chrY_G0000278;Parent=HG003_chrY_T0000743;transcript_name=hg002_chrY_paternal_495.1;gene_name=RBMY2FP;ID=intron:HG003_chrY_T0000743:0;Name=RBMY2FP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	149855	149967	.	+	.	source_transcript=hg002_chrY_paternal_495.1;source_transcript_name=hg002_chrY_paternal_495.1;source_gene=hg002_chrY_paternal_495;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_495;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_495.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_495.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;alternative_source_transcripts=hg002_chrY_paternal_495.1,hg002_chrY_paternal_495.1;transcript_id=HG003_chrY_T0000743;gene_id=HG003_chrY_G0000278;Parent=HG003_chrY_T0000743;transcript_name=hg002_chrY_paternal_495.1;gene_name=RBMY2FP;ID=exon:HG003_chrY_T0000743:1;Name=RBMY2FP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	149968	150389	.	+	.	source_transcript=hg002_chrY_paternal_495.1;source_transcript_name=hg002_chrY_paternal_495.1;source_gene=hg002_chrY_paternal_495;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_495;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_495.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_495.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;alternative_source_transcripts=hg002_chrY_paternal_495.1,hg002_chrY_paternal_495.1;transcript_id=HG003_chrY_T0000743;gene_id=HG003_chrY_G0000278;Parent=HG003_chrY_T0000743;transcript_name=hg002_chrY_paternal_495.1;gene_name=RBMY2FP;ID=intron:HG003_chrY_T0000743:1;Name=RBMY2FP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	150390	150493	.	+	.	source_transcript=hg002_chrY_paternal_495.1;source_transcript_name=hg002_chrY_paternal_495.1;source_gene=hg002_chrY_paternal_495;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_495;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_495.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_495.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;alternative_source_transcripts=hg002_chrY_paternal_495.1,hg002_chrY_paternal_495.1;transcript_id=HG003_chrY_T0000743;gene_id=HG003_chrY_G0000278;Parent=HG003_chrY_T0000743;transcript_name=hg002_chrY_paternal_495.1;gene_name=RBMY2FP;ID=exon:HG003_chrY_T0000743:2;Name=RBMY2FP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	150494	153487	.	+	.	source_transcript=hg002_chrY_paternal_495.1;source_transcript_name=hg002_chrY_paternal_495.1;source_gene=hg002_chrY_paternal_495;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_495;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_495.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_495.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;alternative_source_transcripts=hg002_chrY_paternal_495.1,hg002_chrY_paternal_495.1;transcript_id=HG003_chrY_T0000743;gene_id=HG003_chrY_G0000278;Parent=HG003_chrY_T0000743;transcript_name=hg002_chrY_paternal_495.1;gene_name=RBMY2FP;ID=intron:HG003_chrY_T0000743:2;Name=RBMY2FP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	153488	155200	.	+	.	source_transcript=hg002_chrY_paternal_495.1;source_transcript_name=hg002_chrY_paternal_495.1;source_gene=hg002_chrY_paternal_495;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_495;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_495.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_495.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;alternative_source_transcripts=hg002_chrY_paternal_495.1,hg002_chrY_paternal_495.1;transcript_id=HG003_chrY_T0000743;gene_id=HG003_chrY_G0000278;Parent=HG003_chrY_T0000743;transcript_name=hg002_chrY_paternal_495.1;gene_name=RBMY2FP;ID=exon:HG003_chrY_T0000743:3;Name=RBMY2FP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	gene	155673	159379	.	+	.	source_gene_common_name=LOC100652931;source_gene=hg002_chrY_paternal_494;alternative_source_transcripts=hg002_chrY_paternal_494.1,hg002_chrY_paternal_494.1;gene_id=HG003_chrY_G0000279;gene_biotype=transcribed_pseudogene;gene_name=LOC100652931;gene_sources=liftoff;ID=HG003_chrY_G0000279;Name=LOC100652931
HG003_chrY_random0000132	CAT	transcript	155673	159379	1000	+	.	source_transcript=hg002_chrY_paternal_494.1;source_transcript_name=hg002_chrY_paternal_494.1;source_gene=hg002_chrY_paternal_494;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_494;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_494.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_494.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC100652931;alternative_source_transcripts=hg002_chrY_paternal_494.1,hg002_chrY_paternal_494.1;transcript_id=HG003_chrY_T0000744;gene_id=HG003_chrY_G0000279;Parent=HG003_chrY_G0000279;transcript_name=hg002_chrY_paternal_494.1;gene_name=LOC100652931;ID=HG003_chrY_T0000744;Name=LOC100652931
HG003_chrY_random0000132	CAT	exon	155673	155742	.	+	.	source_transcript=hg002_chrY_paternal_494.1;source_transcript_name=hg002_chrY_paternal_494.1;source_gene=hg002_chrY_paternal_494;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_494;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_494.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_494.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC100652931;alternative_source_transcripts=hg002_chrY_paternal_494.1,hg002_chrY_paternal_494.1;transcript_id=HG003_chrY_T0000744;gene_id=HG003_chrY_G0000279;Parent=HG003_chrY_T0000744;transcript_name=hg002_chrY_paternal_494.1;gene_name=LOC100652931;ID=exon:HG003_chrY_T0000744:0;Name=LOC100652931;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	155743	157777	.	+	.	source_transcript=hg002_chrY_paternal_494.1;source_transcript_name=hg002_chrY_paternal_494.1;source_gene=hg002_chrY_paternal_494;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_494;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_494.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_494.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC100652931;alternative_source_transcripts=hg002_chrY_paternal_494.1,hg002_chrY_paternal_494.1;transcript_id=HG003_chrY_T0000744;gene_id=HG003_chrY_G0000279;Parent=HG003_chrY_T0000744;transcript_name=hg002_chrY_paternal_494.1;gene_name=LOC100652931;ID=intron:HG003_chrY_T0000744:0;Name=LOC100652931;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	157778	157892	.	+	.	source_transcript=hg002_chrY_paternal_494.1;source_transcript_name=hg002_chrY_paternal_494.1;source_gene=hg002_chrY_paternal_494;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_494;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_494.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_494.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC100652931;alternative_source_transcripts=hg002_chrY_paternal_494.1,hg002_chrY_paternal_494.1;transcript_id=HG003_chrY_T0000744;gene_id=HG003_chrY_G0000279;Parent=HG003_chrY_T0000744;transcript_name=hg002_chrY_paternal_494.1;gene_name=LOC100652931;ID=exon:HG003_chrY_T0000744:1;Name=LOC100652931;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	157893	159357	.	+	.	source_transcript=hg002_chrY_paternal_494.1;source_transcript_name=hg002_chrY_paternal_494.1;source_gene=hg002_chrY_paternal_494;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_494;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_494.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_494.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC100652931;alternative_source_transcripts=hg002_chrY_paternal_494.1,hg002_chrY_paternal_494.1;transcript_id=HG003_chrY_T0000744;gene_id=HG003_chrY_G0000279;Parent=HG003_chrY_T0000744;transcript_name=hg002_chrY_paternal_494.1;gene_name=LOC100652931;ID=intron:HG003_chrY_T0000744:1;Name=LOC100652931;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	159358	159379	.	+	.	source_transcript=hg002_chrY_paternal_494.1;source_transcript_name=hg002_chrY_paternal_494.1;source_gene=hg002_chrY_paternal_494;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_494;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_494.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_494.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC100652931;alternative_source_transcripts=hg002_chrY_paternal_494.1,hg002_chrY_paternal_494.1;transcript_id=HG003_chrY_T0000744;gene_id=HG003_chrY_G0000279;Parent=HG003_chrY_T0000744;transcript_name=hg002_chrY_paternal_494.1;gene_name=LOC100652931;ID=exon:HG003_chrY_T0000744:2;Name=LOC100652931;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	gene	242399	263860	.	+	.	source_gene_common_name=RBMY1J;source_gene=hg002_chrY_paternal_489;alternative_source_transcripts=hg002_chrY_paternal_489.1,hg002_chrY_paternal_489.1;gene_id=HG003_chrY_G0000280;gene_biotype=protein_coding;gene_name=RBMY1J;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000280;Name=RBMY1J
HG003_chrY_random0000132	CAT	transcript	242399	263860	100	+	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1,hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000745;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_G0000280;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=HG003_chrY_T0000745;Name=RBMY1J
HG003_chrY_random0000132	CAT	exon	242399	242572	.	+	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1,hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000745;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000745;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000745:0;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	242573	244433	.	+	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1,hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000745;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000745;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000745:0;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	244434	244546	.	+	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1,hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000745;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000745;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000745:1;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	244438	244546	.	+	0	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1,hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000745;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000745;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000745:0;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	start_codon	244438	244440	.	+	0	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1,hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000745;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000745;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=start_codon:HG003_chrY_T0000745;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	244547	245014	.	+	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1,hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000745;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000745;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000745:1;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	245015	245118	.	+	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1,hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000745;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000745;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000745:2;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	245015	245118	.	+	2	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1,hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000745;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000745;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000745:1;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	245119	248141	.	+	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1,hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000745;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000745;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000745:2;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	248142	248319	.	+	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1,hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000745;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000745;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000745:3;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	248142	248319	.	+	0	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1,hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000745;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000745;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000745:2;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	248320	250234	.	+	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1,hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000745;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000745;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000745:3;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	250235	250387	.	+	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1,hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000745;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000745;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000745:4;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	250235	250387	.	+	2	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1,hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000745;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000745;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000745:3;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	250388	252397	.	+	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1,hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000745;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000745;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000745:4;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	252398	252512	.	+	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1,hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000745;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000745;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000745:5;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	252398	252512	.	+	2	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1,hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000745;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000745;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000745:4;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	252513	253467	.	+	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1,hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000745;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000745;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000745:5;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	253468	253578	.	+	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1,hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000745;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000745;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000745:6;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	253468	253578	.	+	1	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1,hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000745;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000745;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000745:5;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	253579	254018	.	+	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1,hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000745;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000745;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000745:6;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	254019	254129	.	+	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1,hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000745;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000745;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000745:7;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	254019	254129	.	+	1	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1,hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000745;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000745;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000745:6;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	254130	254563	.	+	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1,hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000745;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000745;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000745:7;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	254564	254674	.	+	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1,hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000745;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000745;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000745:8;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	254564	254674	.	+	1	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1,hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000745;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000745;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000745:7;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	254675	255597	.	+	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1,hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000745;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000745;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000745:8;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	255598	255708	.	+	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1,hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000745;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000745;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000745:9;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	255598	255708	.	+	1	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1,hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000745;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000745;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000745:8;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	255709	255794	.	+	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1,hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000745;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000745;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000745:9;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	255795	255883	.	+	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1,hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000745;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000745;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000745:10;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	255795	255883	.	+	1	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1,hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000745;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000745;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000745:9;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	255884	259616	.	+	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1,hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000745;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000745;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000745:10;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	259617	259763	.	+	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1,hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000745;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000745;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000745:11;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	259617	259763	.	+	2	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1,hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000745;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000745;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000745:10;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	259764	262356	.	+	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1,hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000745;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000745;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000745:11;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	262357	263860	.	+	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1,hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000745;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000745;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000745:12;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	262357	262367	.	+	2	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1,hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000745;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000745;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000745:11;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	stop_codon	262365	262367	.	+	0	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1,hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000745;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000745;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=stop_codon:HG003_chrY_T0000745;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	transcript	242399	256871	100	+	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3,hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000746;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_G0000280;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=HG003_chrY_T0000746;Name=RBMY1J
HG003_chrY_random0000132	CAT	exon	242399	242572	.	+	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3,hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000746;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000746;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000746:0;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	242573	244433	.	+	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3,hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000746;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000746;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000746:0;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	244434	244546	.	+	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3,hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000746;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000746;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000746:1;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	244438	244546	.	+	0	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3,hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000746;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000746;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000746:0;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	start_codon	244438	244440	.	+	0	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3,hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000746;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000746;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=start_codon:HG003_chrY_T0000746;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	244547	245014	.	+	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3,hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000746;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000746;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000746:1;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	245015	245118	.	+	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3,hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000746;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000746;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000746:2;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	245015	245118	.	+	2	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3,hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000746;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000746;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000746:1;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	245119	248141	.	+	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3,hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000746;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000746;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000746:2;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	248142	248319	.	+	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3,hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000746;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000746;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000746:3;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	248142	248319	.	+	0	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3,hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000746;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000746;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000746:2;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	248320	250234	.	+	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3,hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000746;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000746;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000746:3;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	250235	250387	.	+	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3,hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000746;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000746;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000746:4;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	250235	250387	.	+	2	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3,hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000746;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000746;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000746:3;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	250388	252397	.	+	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3,hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000746;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000746;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000746:4;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	252398	252512	.	+	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3,hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000746;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000746;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000746:5;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	252398	252512	.	+	2	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3,hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000746;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000746;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000746:4;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	252513	253467	.	+	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3,hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000746;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000746;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000746:5;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	253468	253578	.	+	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3,hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000746;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000746;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000746:6;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	253468	253578	.	+	1	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3,hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000746;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000746;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000746:5;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	253579	254018	.	+	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3,hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000746;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000746;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000746:6;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	254019	254129	.	+	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3,hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000746;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000746;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000746:7;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	254019	254129	.	+	1	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3,hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000746;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000746;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000746:6;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	254130	254563	.	+	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3,hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000746;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000746;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000746:7;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	254564	254674	.	+	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3,hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000746;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000746;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000746:8;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	254564	254674	.	+	1	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3,hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000746;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000746;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000746:7;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	254675	255597	.	+	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3,hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000746;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000746;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000746:8;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	255598	255708	.	+	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3,hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000746;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000746;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000746:9;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	255598	255708	.	+	1	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3,hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000746;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000746;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000746:8;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	255709	255794	.	+	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3,hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000746;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000746;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000746:9;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	255795	255883	.	+	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3,hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000746;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000746;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000746:10;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	255795	255883	.	+	1	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3,hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000746;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000746;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000746:9;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	255884	256294	.	+	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3,hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000746;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000746;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000746:10;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	256295	256871	.	+	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3,hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000746;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000746;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000746:11;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	256295	256593	.	+	2	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3,hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000746;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000746;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000746:10;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	stop_codon	256591	256593	.	+	0	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3,hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000746;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000746;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=stop_codon:HG003_chrY_T0000746;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	transcript	242399	256871	100	+	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4,hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000747;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_G0000280;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=HG003_chrY_T0000747;Name=RBMY1J
HG003_chrY_random0000132	CAT	exon	242399	242572	.	+	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4,hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000747;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000747;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000747:0;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	242573	244433	.	+	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4,hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000747;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000747;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000747:0;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	244434	244546	.	+	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4,hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000747;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000747;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000747:1;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	244438	244546	.	+	0	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4,hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000747;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000747;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000747:0;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	start_codon	244438	244440	.	+	0	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4,hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000747;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000747;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=start_codon:HG003_chrY_T0000747;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	244547	245014	.	+	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4,hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000747;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000747;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000747:1;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	245015	245118	.	+	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4,hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000747;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000747;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000747:2;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	245015	245118	.	+	2	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4,hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000747;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000747;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000747:1;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	245119	248141	.	+	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4,hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000747;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000747;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000747:2;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	248142	248319	.	+	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4,hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000747;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000747;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000747:3;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	248142	248319	.	+	0	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4,hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000747;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000747;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000747:2;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	248320	250234	.	+	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4,hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000747;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000747;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000747:3;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	250235	250387	.	+	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4,hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000747;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000747;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000747:4;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	250235	250387	.	+	2	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4,hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000747;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000747;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000747:3;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	250388	252397	.	+	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4,hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000747;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000747;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000747:4;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	252398	252512	.	+	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4,hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000747;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000747;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000747:5;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	252398	252512	.	+	2	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4,hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000747;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000747;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000747:4;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	252513	253467	.	+	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4,hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000747;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000747;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000747:5;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	253468	253578	.	+	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4,hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000747;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000747;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000747:6;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	253468	253578	.	+	1	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4,hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000747;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000747;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000747:5;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	253579	254018	.	+	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4,hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000747;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000747;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000747:6;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	254019	254129	.	+	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4,hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000747;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000747;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000747:7;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	254019	254129	.	+	1	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4,hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000747;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000747;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000747:6;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	254130	254563	.	+	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4,hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000747;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000747;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000747:7;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	254564	254674	.	+	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4,hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000747;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000747;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000747:8;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	254564	254674	.	+	1	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4,hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000747;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000747;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000747:7;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	254675	255794	.	+	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4,hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000747;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000747;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000747:8;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	255795	255883	.	+	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4,hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000747;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000747;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000747:9;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	255795	255883	.	+	1	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4,hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000747;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000747;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000747:8;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	255884	256294	.	+	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4,hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000747;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000747;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000747:9;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	256295	256871	.	+	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4,hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000747;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000747;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000747:10;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	256295	256593	.	+	2	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4,hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000747;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000747;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000747:9;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	stop_codon	256591	256593	.	+	0	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4,hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000747;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000747;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=stop_codon:HG003_chrY_T0000747;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	transcript	245027	256871	100	+	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2,hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000748;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_G0000280;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=HG003_chrY_T0000748;Name=RBMY1J
HG003_chrY_random0000132	CAT	exon	245027	245118	.	+	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2,hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000748;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000748;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000748:0;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	245119	250234	.	+	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2,hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000748;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000748;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000748:0;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	250235	250387	.	+	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2,hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000748;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000748;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000748:1;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	250264	250387	.	+	0	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2,hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000748;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000748;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000748:0;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	start_codon	250264	250266	.	+	0	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2,hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000748;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000748;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=start_codon:HG003_chrY_T0000748;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	250388	252397	.	+	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2,hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000748;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000748;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000748:1;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	252398	252512	.	+	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2,hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000748;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000748;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000748:2;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	252398	252512	.	+	2	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2,hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000748;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000748;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000748:1;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	252513	253467	.	+	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2,hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000748;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000748;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000748:2;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	253468	253578	.	+	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2,hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000748;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000748;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000748:3;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	253468	253578	.	+	1	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2,hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000748;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000748;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000748:2;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	253579	254018	.	+	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2,hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000748;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000748;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000748:3;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	254019	254129	.	+	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2,hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000748;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000748;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000748:4;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	254019	254129	.	+	1	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2,hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000748;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000748;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000748:3;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	254130	254563	.	+	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2,hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000748;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000748;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000748:4;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	254564	254674	.	+	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2,hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000748;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000748;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000748:5;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	254564	254674	.	+	1	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2,hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000748;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000748;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000748:4;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	254675	255597	.	+	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2,hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000748;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000748;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000748:5;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	255598	255708	.	+	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2,hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000748;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000748;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000748:6;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	255598	255708	.	+	1	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2,hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000748;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000748;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000748:5;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	255709	255794	.	+	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2,hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000748;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000748;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000748:6;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	255795	255883	.	+	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2,hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000748;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000748;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000748:7;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	255795	255883	.	+	1	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2,hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000748;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000748;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000748:6;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	255884	256294	.	+	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2,hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000748;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000748;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:HG003_chrY_T0000748:7;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	256295	256871	.	+	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2,hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000748;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000748;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:HG003_chrY_T0000748:8;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	256295	256593	.	+	2	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2,hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000748;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000748;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0000748:7;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	stop_codon	256591	256593	.	+	0	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2,hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000748;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000748;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=stop_codon:HG003_chrY_T0000748;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	5143	46645	.	-	.	source_gene_common_name=REREP2Y;source_gene=hg002_chrY_paternal_668;alternative_source_transcripts=hg002_chrY_paternal_596.1,hg002_chrY_paternal_596.1;gene_id=HG003_chrY_G0000281;gene_biotype=transcribed_pseudogene;gene_name=REREP2Y;gene_sources=liftoff;ID=HG003_chrY_G0000281;Name=REREP2Y
HG003_chrY_random0000146	CAT	transcript	5143	46645	1000	-	.	source_transcript=hg002_chrY_paternal_668.1;source_transcript_name=hg002_chrY_paternal_668.1;source_gene=hg002_chrY_paternal_668;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_668;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_668.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_668.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=REREP2Y;alternative_source_transcripts=hg002_chrY_paternal_596.1,hg002_chrY_paternal_596.1;transcript_id=HG003_chrY_T0000749;gene_id=HG003_chrY_G0000281;Parent=HG003_chrY_G0000281;transcript_name=hg002_chrY_paternal_668.1;gene_name=REREP2Y;ID=HG003_chrY_T0000749;Name=REREP2Y
HG003_chrY_random0000146	CAT	exon	5143	9732	.	-	.	source_transcript=hg002_chrY_paternal_668.1;source_transcript_name=hg002_chrY_paternal_668.1;source_gene=hg002_chrY_paternal_668;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_668;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_668.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_668.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=REREP2Y;alternative_source_transcripts=hg002_chrY_paternal_596.1,hg002_chrY_paternal_596.1;transcript_id=HG003_chrY_T0000749;gene_id=HG003_chrY_G0000281;Parent=HG003_chrY_T0000749;transcript_name=hg002_chrY_paternal_668.1;gene_name=REREP2Y;ID=exon:HG003_chrY_T0000749:0;Name=REREP2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	9733	19350	.	-	.	source_transcript=hg002_chrY_paternal_668.1;source_transcript_name=hg002_chrY_paternal_668.1;source_gene=hg002_chrY_paternal_668;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_668;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_668.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_668.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=REREP2Y;alternative_source_transcripts=hg002_chrY_paternal_596.1,hg002_chrY_paternal_596.1;transcript_id=HG003_chrY_T0000749;gene_id=HG003_chrY_G0000281;Parent=HG003_chrY_T0000749;transcript_name=hg002_chrY_paternal_668.1;gene_name=REREP2Y;ID=intron:HG003_chrY_T0000749:0;Name=REREP2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	19351	19423	.	-	.	source_transcript=hg002_chrY_paternal_668.1;source_transcript_name=hg002_chrY_paternal_668.1;source_gene=hg002_chrY_paternal_668;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_668;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_668.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_668.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=REREP2Y;alternative_source_transcripts=hg002_chrY_paternal_596.1,hg002_chrY_paternal_596.1;transcript_id=HG003_chrY_T0000749;gene_id=HG003_chrY_G0000281;Parent=HG003_chrY_T0000749;transcript_name=hg002_chrY_paternal_668.1;gene_name=REREP2Y;ID=exon:HG003_chrY_T0000749:1;Name=REREP2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	19424	46242	.	-	.	source_transcript=hg002_chrY_paternal_668.1;source_transcript_name=hg002_chrY_paternal_668.1;source_gene=hg002_chrY_paternal_668;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_668;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_668.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_668.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=REREP2Y;alternative_source_transcripts=hg002_chrY_paternal_596.1,hg002_chrY_paternal_596.1;transcript_id=HG003_chrY_T0000749;gene_id=HG003_chrY_G0000281;Parent=HG003_chrY_T0000749;transcript_name=hg002_chrY_paternal_668.1;gene_name=REREP2Y;ID=intron:HG003_chrY_T0000749:1;Name=REREP2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	46243	46645	.	-	.	source_transcript=hg002_chrY_paternal_668.1;source_transcript_name=hg002_chrY_paternal_668.1;source_gene=hg002_chrY_paternal_668;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_668;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_668.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_668.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=REREP2Y;alternative_source_transcripts=hg002_chrY_paternal_596.1,hg002_chrY_paternal_596.1;transcript_id=HG003_chrY_T0000749;gene_id=HG003_chrY_G0000281;Parent=HG003_chrY_T0000749;transcript_name=hg002_chrY_paternal_668.1;gene_name=REREP2Y;ID=exon:HG003_chrY_T0000749:2;Name=REREP2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	58649	58786	.	+	.	source_gene_common_name=LOC124900507;source_gene=hg002_chrY_paternal_669;alternative_source_transcripts=hg002_chrY_paternal_597.1,hg002_chrY_paternal_597.1;gene_id=HG003_chrY_G0000282;gene_biotype=snoRNA;gene_name=LOC124900507;gene_sources=liftoff;ID=HG003_chrY_G0000282;Name=LOC124900507
HG003_chrY_random0000146	CAT	transcript	58649	58786	1000	+	.	source_transcript=hg002_chrY_paternal_669.1;source_transcript_name=hg002_chrY_paternal_669.1;source_gene=hg002_chrY_paternal_669;source_gene_biotype=snoRNA;original_gene_id=hg002_chrY_paternal_669;gene_biotype=snoRNA;transcript_biotype=snoRNA;alignment_id=hg002_chrY_paternal_669.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_669.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124900507;alternative_source_transcripts=hg002_chrY_paternal_597.1,hg002_chrY_paternal_597.1;transcript_id=HG003_chrY_T0000750;gene_id=HG003_chrY_G0000282;Parent=HG003_chrY_G0000282;transcript_name=hg002_chrY_paternal_669.1;gene_name=LOC124900507;ID=HG003_chrY_T0000750;Name=LOC124900507
HG003_chrY_random0000146	CAT	exon	58649	58786	.	+	.	source_transcript=hg002_chrY_paternal_669.1;source_transcript_name=hg002_chrY_paternal_669.1;source_gene=hg002_chrY_paternal_669;source_gene_biotype=snoRNA;original_gene_id=hg002_chrY_paternal_669;gene_biotype=snoRNA;transcript_biotype=snoRNA;alignment_id=hg002_chrY_paternal_669.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_669.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124900507;alternative_source_transcripts=hg002_chrY_paternal_597.1,hg002_chrY_paternal_597.1;transcript_id=HG003_chrY_T0000750;gene_id=HG003_chrY_G0000282;Parent=HG003_chrY_T0000750;transcript_name=hg002_chrY_paternal_669.1;gene_name=LOC124900507;ID=exon:HG003_chrY_T0000750:0;Name=LOC124900507;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	167540	170881	.	-	.	source_gene_common_name=LOC105377238;source_gene=hg002_chrY_paternal_599;alternative_source_transcripts=hg002_chrY_paternal_599.1,hg002_chrY_paternal_599.1;gene_id=HG003_chrY_G0000283;gene_biotype=lncRNA;gene_name=LOC105377238;gene_sources=liftoff;ID=HG003_chrY_G0000283;Name=LOC105377238
HG003_chrY_random0000146	CAT	transcript	167540	170881	1000	-	.	source_transcript=hg002_chrY_paternal_599.1;source_transcript_name=hg002_chrY_paternal_599.1;source_gene=hg002_chrY_paternal_599;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_599;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_599.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_599.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377238;alternative_source_transcripts=hg002_chrY_paternal_599.1,hg002_chrY_paternal_599.1;transcript_id=HG003_chrY_T0000751;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_G0000283;transcript_name=hg002_chrY_paternal_599.1;gene_name=LOC105377238;ID=HG003_chrY_T0000751;Name=LOC105377238
HG003_chrY_random0000146	CAT	exon	167540	167640	.	-	.	source_transcript=hg002_chrY_paternal_599.1;source_transcript_name=hg002_chrY_paternal_599.1;source_gene=hg002_chrY_paternal_599;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_599;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_599.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_599.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377238;alternative_source_transcripts=hg002_chrY_paternal_599.1,hg002_chrY_paternal_599.1;transcript_id=HG003_chrY_T0000751;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000751;transcript_name=hg002_chrY_paternal_599.1;gene_name=LOC105377238;ID=exon:HG003_chrY_T0000751:0;Name=LOC105377238;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	167641	169971	.	-	.	source_transcript=hg002_chrY_paternal_599.1;source_transcript_name=hg002_chrY_paternal_599.1;source_gene=hg002_chrY_paternal_599;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_599;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_599.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_599.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377238;alternative_source_transcripts=hg002_chrY_paternal_599.1,hg002_chrY_paternal_599.1;transcript_id=HG003_chrY_T0000751;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000751;transcript_name=hg002_chrY_paternal_599.1;gene_name=LOC105377238;ID=intron:HG003_chrY_T0000751:0;Name=LOC105377238;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	169972	170036	.	-	.	source_transcript=hg002_chrY_paternal_599.1;source_transcript_name=hg002_chrY_paternal_599.1;source_gene=hg002_chrY_paternal_599;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_599;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_599.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_599.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377238;alternative_source_transcripts=hg002_chrY_paternal_599.1,hg002_chrY_paternal_599.1;transcript_id=HG003_chrY_T0000751;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000751;transcript_name=hg002_chrY_paternal_599.1;gene_name=LOC105377238;ID=exon:HG003_chrY_T0000751:1;Name=LOC105377238;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	170037	170698	.	-	.	source_transcript=hg002_chrY_paternal_599.1;source_transcript_name=hg002_chrY_paternal_599.1;source_gene=hg002_chrY_paternal_599;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_599;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_599.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_599.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377238;alternative_source_transcripts=hg002_chrY_paternal_599.1,hg002_chrY_paternal_599.1;transcript_id=HG003_chrY_T0000751;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000751;transcript_name=hg002_chrY_paternal_599.1;gene_name=LOC105377238;ID=intron:HG003_chrY_T0000751:1;Name=LOC105377238;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	170699	170881	.	-	.	source_transcript=hg002_chrY_paternal_599.1;source_transcript_name=hg002_chrY_paternal_599.1;source_gene=hg002_chrY_paternal_599;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_599;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_599.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_599.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377238;alternative_source_transcripts=hg002_chrY_paternal_599.1,hg002_chrY_paternal_599.1;transcript_id=HG003_chrY_T0000751;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000751;transcript_name=hg002_chrY_paternal_599.1;gene_name=LOC105377238;ID=exon:HG003_chrY_T0000751:2;Name=LOC105377238;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	167540	170881	1000	-	.	source_transcript=hg002_chrY_paternal_599.2;source_transcript_name=hg002_chrY_paternal_599.1;source_gene=hg002_chrY_paternal_599;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_599;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_599.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_599.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377238;alternative_source_transcripts=hg002_chrY_paternal_599.2,hg002_chrY_paternal_599.2;transcript_id=HG003_chrY_T0000752;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_G0000283;transcript_name=hg002_chrY_paternal_599.1;gene_name=LOC105377238;ID=HG003_chrY_T0000752;Name=LOC105377238
HG003_chrY_random0000146	CAT	exon	167540	167640	.	-	.	source_transcript=hg002_chrY_paternal_599.2;source_transcript_name=hg002_chrY_paternal_599.1;source_gene=hg002_chrY_paternal_599;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_599;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_599.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_599.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377238;alternative_source_transcripts=hg002_chrY_paternal_599.2,hg002_chrY_paternal_599.2;transcript_id=HG003_chrY_T0000752;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000752;transcript_name=hg002_chrY_paternal_599.1;gene_name=LOC105377238;ID=exon:HG003_chrY_T0000752:0;Name=LOC105377238;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	167641	169998	.	-	.	source_transcript=hg002_chrY_paternal_599.2;source_transcript_name=hg002_chrY_paternal_599.1;source_gene=hg002_chrY_paternal_599;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_599;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_599.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_599.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377238;alternative_source_transcripts=hg002_chrY_paternal_599.2,hg002_chrY_paternal_599.2;transcript_id=HG003_chrY_T0000752;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000752;transcript_name=hg002_chrY_paternal_599.1;gene_name=LOC105377238;ID=intron:HG003_chrY_T0000752:0;Name=LOC105377238;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	169999	170036	.	-	.	source_transcript=hg002_chrY_paternal_599.2;source_transcript_name=hg002_chrY_paternal_599.1;source_gene=hg002_chrY_paternal_599;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_599;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_599.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_599.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377238;alternative_source_transcripts=hg002_chrY_paternal_599.2,hg002_chrY_paternal_599.2;transcript_id=HG003_chrY_T0000752;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000752;transcript_name=hg002_chrY_paternal_599.1;gene_name=LOC105377238;ID=exon:HG003_chrY_T0000752:1;Name=LOC105377238;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	170037	170698	.	-	.	source_transcript=hg002_chrY_paternal_599.2;source_transcript_name=hg002_chrY_paternal_599.1;source_gene=hg002_chrY_paternal_599;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_599;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_599.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_599.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377238;alternative_source_transcripts=hg002_chrY_paternal_599.2,hg002_chrY_paternal_599.2;transcript_id=HG003_chrY_T0000752;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000752;transcript_name=hg002_chrY_paternal_599.1;gene_name=LOC105377238;ID=intron:HG003_chrY_T0000752:1;Name=LOC105377238;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	170699	170881	.	-	.	source_transcript=hg002_chrY_paternal_599.2;source_transcript_name=hg002_chrY_paternal_599.1;source_gene=hg002_chrY_paternal_599;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_599;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_599.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_599.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377238;alternative_source_transcripts=hg002_chrY_paternal_599.2,hg002_chrY_paternal_599.2;transcript_id=HG003_chrY_T0000752;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000752;transcript_name=hg002_chrY_paternal_599.1;gene_name=LOC105377238;ID=exon:HG003_chrY_T0000752:2;Name=LOC105377238;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	190500	260243	.	-	.	source_gene_common_name=DAZ1;source_gene=hg002_chrY_paternal_600;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;gene_id=HG003_chrY_G0000284;gene_biotype=protein_coding;gene_name=DAZ1;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000284;Name=DAZ1
HG003_chrY_random0000146	CAT	transcript	190500	260157	100	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_G0000284;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=HG003_chrY_T0000753;Name=DAZ1
HG003_chrY_random0000146	CAT	exon	190500	192356	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=exon:HG003_chrY_T0000753:0;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	192357	196319	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=intron:HG003_chrY_T0000753:0;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	196320	196418	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=exon:HG003_chrY_T0000753:1;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	196355	196418	.	-	1	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=CDS:HG003_chrY_T0000753:0;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	stop_codon	196355	196357	.	-	0	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=stop_codon:HG003_chrY_T0000753;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	196419	200991	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=intron:HG003_chrY_T0000753:1;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	200992	201026	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=exon:HG003_chrY_T0000753:2;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	200992	201026	.	-	0	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=CDS:HG003_chrY_T0000753:1;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	201027	201770	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=intron:HG003_chrY_T0000753:2;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	201771	201842	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=exon:HG003_chrY_T0000753:3;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	201771	201842	.	-	0	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=CDS:HG003_chrY_T0000753:2;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	201843	204155	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=intron:HG003_chrY_T0000753:3;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	204156	204227	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=exon:HG003_chrY_T0000753:4;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	204156	204227	.	-	0	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=CDS:HG003_chrY_T0000753:3;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	204228	213941	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=intron:HG003_chrY_T0000753:4;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	213942	214013	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=exon:HG003_chrY_T0000753:5;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	213942	214013	.	-	0	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=CDS:HG003_chrY_T0000753:4;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	214014	216318	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=intron:HG003_chrY_T0000753:5;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	216319	216390	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=exon:HG003_chrY_T0000753:6;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	216319	216390	.	-	0	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=CDS:HG003_chrY_T0000753:5;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	216391	218714	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=intron:HG003_chrY_T0000753:6;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	218715	218786	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=exon:HG003_chrY_T0000753:7;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	218715	218786	.	-	0	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=CDS:HG003_chrY_T0000753:6;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	218787	221100	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=intron:HG003_chrY_T0000753:7;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	221101	221172	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=exon:HG003_chrY_T0000753:8;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	221101	221172	.	-	0	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=CDS:HG003_chrY_T0000753:7;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	221173	223496	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=intron:HG003_chrY_T0000753:8;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	223497	223568	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=exon:HG003_chrY_T0000753:9;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	223497	223568	.	-	0	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=CDS:HG003_chrY_T0000753:8;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	223569	225887	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=intron:HG003_chrY_T0000753:9;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	225888	225959	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=exon:HG003_chrY_T0000753:10;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	225888	225959	.	-	0	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=CDS:HG003_chrY_T0000753:9;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	225960	228332	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=intron:HG003_chrY_T0000753:10;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	228333	228404	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=exon:HG003_chrY_T0000753:11;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	228333	228404	.	-	0	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=CDS:HG003_chrY_T0000753:10;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	228405	229804	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=intron:HG003_chrY_T0000753:11;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	229805	229944	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=exon:HG003_chrY_T0000753:12;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	229805	229944	.	-	2	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=CDS:HG003_chrY_T0000753:11;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	229945	230033	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=intron:HG003_chrY_T0000753:12;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	230034	230097	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=exon:HG003_chrY_T0000753:13;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	230034	230097	.	-	0	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=CDS:HG003_chrY_T0000753:12;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	230098	230533	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=intron:HG003_chrY_T0000753:13;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	230534	230585	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=exon:HG003_chrY_T0000753:14;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	230534	230585	.	-	1	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=CDS:HG003_chrY_T0000753:13;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	230586	231145	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=intron:HG003_chrY_T0000753:14;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	231146	231237	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=exon:HG003_chrY_T0000753:15;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	231146	231237	.	-	0	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=CDS:HG003_chrY_T0000753:14;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	231238	231511	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=intron:HG003_chrY_T0000753:15;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	231512	231658	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=exon:HG003_chrY_T0000753:16;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	231512	231658	.	-	0	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=CDS:HG003_chrY_T0000753:15;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	231659	240644	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=intron:HG003_chrY_T0000753:16;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	240645	240784	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=exon:HG003_chrY_T0000753:17;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	240645	240784	.	-	2	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=CDS:HG003_chrY_T0000753:16;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	240785	240873	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=intron:HG003_chrY_T0000753:17;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	240874	240937	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=exon:HG003_chrY_T0000753:18;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	240874	240937	.	-	0	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=CDS:HG003_chrY_T0000753:17;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	240938	241373	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=intron:HG003_chrY_T0000753:18;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	241374	241425	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=exon:HG003_chrY_T0000753:19;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	241374	241425	.	-	1	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=CDS:HG003_chrY_T0000753:18;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	241426	241985	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=intron:HG003_chrY_T0000753:19;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	241986	242077	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=exon:HG003_chrY_T0000753:20;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	241986	242077	.	-	0	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=CDS:HG003_chrY_T0000753:19;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	242078	242351	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=intron:HG003_chrY_T0000753:20;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	242352	242498	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=exon:HG003_chrY_T0000753:21;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	242352	242498	.	-	0	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=CDS:HG003_chrY_T0000753:20;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	242499	251492	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=intron:HG003_chrY_T0000753:21;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	251493	251632	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=exon:HG003_chrY_T0000753:22;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	251493	251632	.	-	2	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=CDS:HG003_chrY_T0000753:21;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	251633	251721	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=intron:HG003_chrY_T0000753:22;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	251722	251785	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=exon:HG003_chrY_T0000753:23;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	251722	251785	.	-	0	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=CDS:HG003_chrY_T0000753:22;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	251786	252221	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=intron:HG003_chrY_T0000753:23;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	252222	252273	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=exon:HG003_chrY_T0000753:24;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	252222	252273	.	-	1	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=CDS:HG003_chrY_T0000753:23;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	252274	252833	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=intron:HG003_chrY_T0000753:24;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	252834	252925	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=exon:HG003_chrY_T0000753:25;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	252834	252925	.	-	0	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=CDS:HG003_chrY_T0000753:24;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	252926	253199	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=intron:HG003_chrY_T0000753:25;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	253200	253346	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=exon:HG003_chrY_T0000753:26;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	253200	253346	.	-	0	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=CDS:HG003_chrY_T0000753:25;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	253347	259946	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=intron:HG003_chrY_T0000753:26;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	259947	260157	.	-	.	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=exon:HG003_chrY_T0000753:27;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	259947	259949	.	-	0	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=CDS:HG003_chrY_T0000753:26;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	start_codon	259947	259949	.	-	0	source_transcript=hg002_chrY_paternal_600.1;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.1,hg002_chrY_paternal_600.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000753;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=start_codon:HG003_chrY_T0000753;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	190500	260243	100	-	.	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_G0000284;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=HG003_chrY_T0000754;Name=DAZ1
HG003_chrY_random0000146	CAT	exon	190500	192356	.	-	.	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=exon:HG003_chrY_T0000754:0;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	192357	196319	.	-	.	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=intron:HG003_chrY_T0000754:0;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	196320	196418	.	-	.	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=exon:HG003_chrY_T0000754:1;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	196355	196418	.	-	1	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=CDS:HG003_chrY_T0000754:0;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	stop_codon	196355	196357	.	-	0	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=stop_codon:HG003_chrY_T0000754;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	196419	200991	.	-	.	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=intron:HG003_chrY_T0000754:1;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	200992	201026	.	-	.	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=exon:HG003_chrY_T0000754:2;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	200992	201026	.	-	0	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=CDS:HG003_chrY_T0000754:1;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	201027	201770	.	-	.	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=intron:HG003_chrY_T0000754:2;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	201771	201842	.	-	.	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=exon:HG003_chrY_T0000754:3;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	201771	201842	.	-	0	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=CDS:HG003_chrY_T0000754:2;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	201843	213941	.	-	.	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=intron:HG003_chrY_T0000754:3;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	213942	214013	.	-	.	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=exon:HG003_chrY_T0000754:4;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	213942	214013	.	-	0	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=CDS:HG003_chrY_T0000754:3;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	214014	216318	.	-	.	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=intron:HG003_chrY_T0000754:4;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	216319	216390	.	-	.	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=exon:HG003_chrY_T0000754:5;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	216319	216390	.	-	0	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=CDS:HG003_chrY_T0000754:4;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	216391	218714	.	-	.	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=intron:HG003_chrY_T0000754:5;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	218715	218786	.	-	.	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=exon:HG003_chrY_T0000754:6;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	218715	218786	.	-	0	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=CDS:HG003_chrY_T0000754:5;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	218787	221100	.	-	.	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=intron:HG003_chrY_T0000754:6;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	221101	221172	.	-	.	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=exon:HG003_chrY_T0000754:7;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	221101	221172	.	-	0	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=CDS:HG003_chrY_T0000754:6;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	221173	223496	.	-	.	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=intron:HG003_chrY_T0000754:7;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	223497	223568	.	-	.	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=exon:HG003_chrY_T0000754:8;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	223497	223568	.	-	0	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=CDS:HG003_chrY_T0000754:7;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	223569	225887	.	-	.	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=intron:HG003_chrY_T0000754:8;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	225888	225959	.	-	.	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=exon:HG003_chrY_T0000754:9;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	225888	225959	.	-	0	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=CDS:HG003_chrY_T0000754:8;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	225960	228332	.	-	.	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=intron:HG003_chrY_T0000754:9;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	228333	228404	.	-	.	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=exon:HG003_chrY_T0000754:10;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	228333	228404	.	-	0	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=CDS:HG003_chrY_T0000754:9;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	228405	251492	.	-	.	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=intron:HG003_chrY_T0000754:10;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	251493	251632	.	-	.	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=exon:HG003_chrY_T0000754:11;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	251493	251632	.	-	2	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=CDS:HG003_chrY_T0000754:10;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	251633	251721	.	-	.	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=intron:HG003_chrY_T0000754:11;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	251722	251785	.	-	.	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=exon:HG003_chrY_T0000754:12;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	251722	251785	.	-	0	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=CDS:HG003_chrY_T0000754:11;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	251786	252221	.	-	.	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=intron:HG003_chrY_T0000754:12;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	252222	252273	.	-	.	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=exon:HG003_chrY_T0000754:13;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	252222	252273	.	-	1	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=CDS:HG003_chrY_T0000754:12;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	252274	252833	.	-	.	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=intron:HG003_chrY_T0000754:13;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	252834	252925	.	-	.	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=exon:HG003_chrY_T0000754:14;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	252834	252925	.	-	0	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=CDS:HG003_chrY_T0000754:13;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	252926	253199	.	-	.	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=intron:HG003_chrY_T0000754:14;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	253200	253346	.	-	.	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=exon:HG003_chrY_T0000754:15;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	253200	253346	.	-	0	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=CDS:HG003_chrY_T0000754:14;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	253347	259946	.	-	.	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=intron:HG003_chrY_T0000754:15;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	259947	260243	.	-	.	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=exon:HG003_chrY_T0000754:16;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	259947	259949	.	-	0	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=CDS:HG003_chrY_T0000754:15;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	start_codon	259947	259949	.	-	0	source_transcript=hg002_chrY_paternal_600.2;source_transcript_name=hg002_chrY_paternal_600.2;source_gene=hg002_chrY_paternal_600;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_600;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_600.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_600.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;alternative_source_transcripts=hg002_chrY_paternal_600.2,hg002_chrY_paternal_600.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000754;transcript_name=hg002_chrY_paternal_600.2;gene_name=DAZ1;ID=start_codon:HG003_chrY_T0000754;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	280606	338186	.	+	.	source_gene_common_name=DAZ2;source_gene=hg002_chrY_paternal_601;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;gene_id=HG003_chrY_G0000285;gene_biotype=protein_coding;gene_name=DAZ2;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000285;Name=DAZ2
HG003_chrY_random0000146	CAT	transcript	280606	338186	100	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_G0000285;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=HG003_chrY_T0000755;Name=DAZ2
HG003_chrY_random0000146	CAT	exon	280606	280892	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000755:0;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	280890	280892	.	+	0	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000755:0;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	start_codon	280890	280892	.	+	0	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=start_codon:HG003_chrY_T0000755;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	280893	287492	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000755:0;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	287493	287639	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000755:1;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	287493	287639	.	+	0	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000755:1;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	287640	287913	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000755:1;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	287914	288005	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000755:2;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	287914	288005	.	+	0	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000755:2;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	288006	288565	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000755:2;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	288566	288617	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000755:3;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	288566	288617	.	+	1	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000755:3;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	288618	289053	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000755:3;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	289054	289117	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000755:4;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	289054	289117	.	+	0	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000755:4;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	289118	289206	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000755:4;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	289207	289346	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000755:5;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	289207	289346	.	+	2	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000755:5;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	289347	290746	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000755:5;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	290747	290818	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000755:6;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	290747	290818	.	+	0	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000755:6;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	290819	293189	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000755:6;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	293190	293261	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000755:7;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	293190	293261	.	+	0	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000755:7;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	293262	295580	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000755:7;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	295581	295652	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000755:8;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	295581	295652	.	+	0	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000755:8;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	295653	297976	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000755:8;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	297977	298048	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000755:9;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	297977	298048	.	+	0	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000755:9;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	298049	300359	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000755:9;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	300360	300431	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000755:10;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	300360	300431	.	+	0	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000755:10;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	300432	314921	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000755:10;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	314922	314993	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000755:11;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	314922	314993	.	+	0	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000755:11;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	314994	317305	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000755:11;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	317306	317377	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000755:12;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	317306	317377	.	+	0	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000755:12;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	317378	319689	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000755:12;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	319690	319761	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000755:13;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	319690	319761	.	+	0	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000755:13;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	319762	322074	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000755:13;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	322075	322146	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000755:14;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	322075	322146	.	+	0	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000755:14;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	322147	324458	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000755:14;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	324459	324530	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000755:15;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	324459	324530	.	+	0	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000755:15;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	324531	326843	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000755:15;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	326844	326915	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000755:16;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	326844	326915	.	+	0	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000755:16;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	326916	327659	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000755:16;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	327660	327694	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000755:17;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	327660	327694	.	+	0	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000755:17;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	327695	332267	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000755:17;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	332268	332366	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000755:18;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	332268	332331	.	+	1	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000755:18;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	stop_codon	332329	332331	.	+	0	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=stop_codon:HG003_chrY_T0000755;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	332367	336329	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000755:18;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	336330	338186	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.1,hg002_chrY_paternal_601.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000755;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000755:19;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	280606	338186	100	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_G0000285;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=HG003_chrY_T0000756;Name=DAZ2
HG003_chrY_random0000146	CAT	exon	280606	280892	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000756:0;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	280890	280892	.	+	0	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000756:0;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	start_codon	280890	280892	.	+	0	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=start_codon:HG003_chrY_T0000756;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	280893	287492	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000756:0;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	287493	287639	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000756:1;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	287493	287639	.	+	0	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000756:1;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	287640	287913	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000756:1;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	287914	288005	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000756:2;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	287914	288005	.	+	0	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000756:2;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	288006	288565	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000756:2;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	288566	288617	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000756:3;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	288566	288617	.	+	1	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000756:3;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	288618	289053	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000756:3;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	289054	289117	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000756:4;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	289054	289117	.	+	0	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000756:4;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	289118	289206	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000756:4;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	289207	289346	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000756:5;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	289207	289346	.	+	2	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000756:5;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	289347	290746	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000756:5;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	290747	290818	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000756:6;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	290747	290818	.	+	0	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000756:6;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	290819	293189	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000756:6;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	293190	293261	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000756:7;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	293190	293261	.	+	0	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000756:7;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	293262	300359	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000756:7;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	300360	300431	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000756:8;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	300360	300431	.	+	0	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000756:8;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	300432	314921	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000756:8;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	314922	314993	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000756:9;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	314922	314993	.	+	0	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000756:9;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	314994	317305	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000756:9;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	317306	317377	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000756:10;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	317306	317377	.	+	0	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000756:10;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	317378	319689	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000756:10;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	319690	319761	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000756:11;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	319690	319761	.	+	0	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000756:11;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	319762	326843	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000756:11;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	326844	326915	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000756:12;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	326844	326915	.	+	0	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000756:12;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	326916	327659	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000756:12;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	327660	327694	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000756:13;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	327660	327694	.	+	0	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000756:13;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	327695	332267	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000756:13;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	332268	332366	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000756:14;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	332268	332331	.	+	1	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000756:14;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	stop_codon	332329	332331	.	+	0	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=stop_codon:HG003_chrY_T0000756;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	332367	336329	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000756:14;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	336330	338186	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.2,hg002_chrY_paternal_601.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000756;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000756:15;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	280606	338186	100	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_G0000285;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=HG003_chrY_T0000757;Name=DAZ2
HG003_chrY_random0000146	CAT	exon	280606	280892	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000757:0;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	280890	280892	.	+	0	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000757:0;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	start_codon	280890	280892	.	+	0	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=start_codon:HG003_chrY_T0000757;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	280893	287492	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000757:0;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	287493	287639	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000757:1;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	287493	287639	.	+	0	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000757:1;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	287640	287913	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000757:1;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	287914	288005	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000757:2;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	287914	288005	.	+	0	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000757:2;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	288006	288565	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000757:2;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	288566	288617	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000757:3;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	288566	288617	.	+	1	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000757:3;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	288618	289053	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000757:3;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	289054	289117	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000757:4;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	289054	289117	.	+	0	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000757:4;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	289118	289206	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000757:4;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	289207	289346	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000757:5;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	289207	289346	.	+	2	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000757:5;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	289347	290746	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000757:5;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	290747	290818	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000757:6;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	290747	290818	.	+	0	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000757:6;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	290819	293189	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000757:6;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	293190	293261	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000757:7;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	293190	293261	.	+	0	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000757:7;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	293262	295580	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000757:7;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	295581	295652	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000757:8;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	295581	295652	.	+	0	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000757:8;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	295653	297976	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000757:8;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	297977	298048	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000757:9;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	297977	298048	.	+	0	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000757:9;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	298049	300359	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000757:9;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	300360	300431	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000757:10;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	300360	300431	.	+	0	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000757:10;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	300432	305132	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000757:10;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	305133	305204	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000757:11;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	305133	305204	.	+	0	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000757:11;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	305205	314921	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000757:11;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	314922	314993	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000757:12;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	314922	314993	.	+	0	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000757:12;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	314994	317305	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000757:12;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	317306	317377	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000757:13;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	317306	317377	.	+	0	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000757:13;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	317378	319689	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000757:13;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	319690	319761	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000757:14;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	319690	319761	.	+	0	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000757:14;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	319762	322074	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000757:14;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	322075	322146	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000757:15;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	322075	322146	.	+	0	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000757:15;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	322147	324458	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000757:15;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	324459	324530	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000757:16;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	324459	324530	.	+	0	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000757:16;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	324531	326843	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000757:16;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	326844	326915	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000757:17;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	326844	326915	.	+	0	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000757:17;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	326916	327659	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000757:17;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	327660	327694	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000757:18;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	327660	327694	.	+	0	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000757:18;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	327695	332267	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000757:18;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	332268	332366	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000757:19;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	332268	332331	.	+	1	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000757:19;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	stop_codon	332329	332331	.	+	0	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=stop_codon:HG003_chrY_T0000757;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	332367	336329	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000757:19;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	336330	338186	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.3,hg002_chrY_paternal_601.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000757;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000757:20;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	280682	338186	100	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_G0000285;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=HG003_chrY_T0000758;Name=DAZ2
HG003_chrY_random0000146	CAT	exon	280682	280892	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000758:0;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	280890	280892	.	+	0	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000758:0;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	start_codon	280890	280892	.	+	0	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=start_codon:HG003_chrY_T0000758;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	280893	287492	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000758:0;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	287493	287639	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000758:1;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	287493	287639	.	+	0	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000758:1;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	287640	287913	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000758:1;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	287914	288005	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000758:2;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	287914	288005	.	+	0	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000758:2;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	288006	288565	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000758:2;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	288566	288617	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000758:3;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	288566	288617	.	+	1	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000758:3;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	288618	289053	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000758:3;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	289054	289117	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000758:4;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	289054	289117	.	+	0	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000758:4;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	289118	289206	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000758:4;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	289207	289346	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000758:5;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	289207	289346	.	+	2	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000758:5;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	289347	290746	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000758:5;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	290747	290818	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000758:6;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	290747	290818	.	+	0	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000758:6;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	290819	293189	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000758:6;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	293190	293261	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000758:7;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	293190	293261	.	+	0	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000758:7;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	293262	295580	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000758:7;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	295581	295652	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000758:8;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	295581	295652	.	+	0	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000758:8;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	295653	297976	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000758:8;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	297977	298048	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000758:9;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	297977	298048	.	+	0	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000758:9;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	298049	300359	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000758:9;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	300360	300431	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000758:10;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	300360	300431	.	+	0	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000758:10;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	300432	305132	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000758:10;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	305133	305204	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000758:11;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	305133	305204	.	+	0	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000758:11;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	305205	314921	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000758:11;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	314922	314993	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000758:12;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	314922	314993	.	+	0	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000758:12;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	314994	317305	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000758:12;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	317306	317377	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000758:13;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	317306	317377	.	+	0	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000758:13;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	317378	319689	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000758:13;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	319690	319761	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000758:14;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	319690	319761	.	+	0	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000758:14;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	319762	322074	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000758:14;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	322075	322146	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000758:15;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	322075	322146	.	+	0	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000758:15;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	322147	324458	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000758:15;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	324459	324530	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000758:16;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	324459	324530	.	+	0	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000758:16;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	324531	326843	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000758:16;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	326844	326915	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000758:17;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	326844	326915	.	+	0	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000758:17;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	326916	327659	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000758:17;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	327660	327694	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000758:18;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	327660	327694	.	+	0	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000758:18;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	327695	332267	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000758:18;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	332268	332366	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000758:19;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	332268	332331	.	+	1	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000758:19;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	stop_codon	332329	332331	.	+	0	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=stop_codon:HG003_chrY_T0000758;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	332367	336329	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000758:19;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	336330	338186	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.4,hg002_chrY_paternal_601.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000758;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000758:20;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	280682	338186	100	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_G0000285;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=HG003_chrY_T0000759;Name=DAZ2
HG003_chrY_random0000146	CAT	exon	280682	280892	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000759:0;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	280890	280892	.	+	0	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000759:0;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	start_codon	280890	280892	.	+	0	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=start_codon:HG003_chrY_T0000759;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	280893	287492	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000759:0;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	287493	287639	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000759:1;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	287493	287639	.	+	0	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000759:1;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	287640	287913	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000759:1;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	287914	288005	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000759:2;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	287914	288005	.	+	0	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000759:2;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	288006	288565	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000759:2;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	288566	288617	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000759:3;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	288566	288617	.	+	1	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000759:3;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	288618	289053	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000759:3;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	289054	289117	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000759:4;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	289054	289117	.	+	0	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000759:4;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	289118	289206	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000759:4;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	289207	289346	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000759:5;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	289207	289346	.	+	2	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000759:5;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	289347	290746	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000759:5;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	290747	290818	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000759:6;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	290747	290818	.	+	0	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000759:6;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	290819	293189	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000759:6;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	293190	293261	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000759:7;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	293190	293261	.	+	0	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000759:7;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	293262	295580	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000759:7;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	295581	295652	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000759:8;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	295581	295652	.	+	0	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000759:8;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	295653	297976	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000759:8;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	297977	298048	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000759:9;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	297977	298048	.	+	0	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000759:9;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	298049	300359	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000759:9;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	300360	300431	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000759:10;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	300360	300431	.	+	0	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000759:10;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	300432	302755	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000759:10;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	302756	302827	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000759:11;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	302756	302827	.	+	0	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000759:11;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	302828	305132	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000759:11;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	305133	305204	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000759:12;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	305133	305204	.	+	0	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000759:12;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	305205	314921	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000759:12;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	314922	314993	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000759:13;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	314922	314993	.	+	0	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000759:13;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	314994	317305	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000759:13;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	317306	317377	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000759:14;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	317306	317377	.	+	0	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000759:14;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	317378	319689	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000759:14;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	319690	319761	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000759:15;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	319690	319761	.	+	0	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000759:15;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	319762	322074	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000759:15;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	322075	322146	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000759:16;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	322075	322146	.	+	0	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000759:16;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	322147	326843	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000759:16;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	326844	326915	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000759:17;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	326844	326915	.	+	0	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000759:17;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	326916	327659	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000759:17;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	327660	327694	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000759:18;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	327660	327694	.	+	0	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000759:18;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	327695	332267	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000759:18;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	332268	332366	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000759:19;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	332268	332331	.	+	1	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000759:19;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	stop_codon	332329	332331	.	+	0	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=stop_codon:HG003_chrY_T0000759;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	332367	336329	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000759:19;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	336330	338186	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.5,hg002_chrY_paternal_601.5;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000759;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000759:20;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	280682	338186	100	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_G0000285;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=HG003_chrY_T0000760;Name=DAZ2
HG003_chrY_random0000146	CAT	exon	280682	280892	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000760:0;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	280890	280892	.	+	0	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000760:0;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	start_codon	280890	280892	.	+	0	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=start_codon:HG003_chrY_T0000760;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	280893	287913	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000760:0;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	287914	288005	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000760:1;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	287914	288005	.	+	0	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000760:1;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	288006	288565	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000760:1;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	288566	288617	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000760:2;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	288566	288617	.	+	1	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000760:2;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	288618	289053	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000760:2;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	289054	289117	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000760:3;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	289054	289117	.	+	0	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000760:3;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	289118	289206	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000760:3;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	289207	289346	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000760:4;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	289207	289346	.	+	2	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000760:4;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	289347	290746	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000760:4;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	290747	290818	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000760:5;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	290747	290818	.	+	0	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000760:5;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	290819	293189	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000760:5;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	293190	293261	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000760:6;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	293190	293261	.	+	0	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000760:6;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	293262	295580	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000760:6;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	295581	295652	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000760:7;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	295581	295652	.	+	0	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000760:7;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	295653	297976	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000760:7;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	297977	298048	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000760:8;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	297977	298048	.	+	0	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000760:8;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	298049	300359	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000760:8;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	300360	300431	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000760:9;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	300360	300431	.	+	0	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000760:9;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	300432	302755	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000760:9;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	302756	302827	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000760:10;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	302756	302827	.	+	0	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000760:10;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	302828	305132	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000760:10;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	305133	305204	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000760:11;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	305133	305204	.	+	0	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000760:11;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	305205	314921	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000760:11;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	314922	314993	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000760:12;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	314922	314993	.	+	0	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000760:12;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	314994	317305	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000760:12;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	317306	317377	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000760:13;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	317306	317377	.	+	0	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000760:13;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	317378	319689	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000760:13;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	319690	319761	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000760:14;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	319690	319761	.	+	0	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000760:14;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	319762	322074	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000760:14;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	322075	322146	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000760:15;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	322075	322146	.	+	0	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000760:15;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	322147	324458	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000760:15;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	324459	324530	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000760:16;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	324459	324530	.	+	0	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000760:16;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	324531	326843	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000760:16;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	326844	326915	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000760:17;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	326844	326915	.	+	0	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000760:17;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	326916	327659	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000760:17;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	327660	327694	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000760:18;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	327660	327694	.	+	0	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000760:18;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	327695	332267	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000760:18;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	332268	332366	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000760:19;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	332268	332331	.	+	1	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000760:19;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	stop_codon	332329	332331	.	+	0	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=stop_codon:HG003_chrY_T0000760;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	332367	336329	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000760:19;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	336330	338186	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.6,hg002_chrY_paternal_601.6;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000760;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000760:20;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	280682	338186	100	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_G0000285;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=HG003_chrY_T0000761;Name=DAZ2
HG003_chrY_random0000146	CAT	exon	280682	280892	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000761:0;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	280890	280892	.	+	0	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000761:0;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	start_codon	280890	280892	.	+	0	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=start_codon:HG003_chrY_T0000761;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	280893	287492	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000761:0;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	287493	287639	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000761:1;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	287493	287639	.	+	0	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000761:1;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	287640	287913	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000761:1;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	287914	288005	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000761:2;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	287914	288005	.	+	0	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000761:2;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	288006	288565	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000761:2;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	288566	288617	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000761:3;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	288566	288617	.	+	1	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000761:3;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	288618	289053	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000761:3;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	289054	289117	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000761:4;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	289054	289117	.	+	0	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000761:4;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	289118	289206	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000761:4;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	289207	289346	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000761:5;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	289207	289346	.	+	2	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000761:5;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	289347	290746	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000761:5;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	290747	290818	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000761:6;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	290747	290818	.	+	0	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000761:6;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	290819	293189	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000761:6;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	293190	293261	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000761:7;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	293190	293261	.	+	0	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000761:7;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	293262	295580	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000761:7;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	295581	295652	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000761:8;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	295581	295652	.	+	0	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000761:8;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	295653	297976	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000761:8;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	297977	298048	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000761:9;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	297977	298048	.	+	0	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000761:9;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	298049	300359	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000761:9;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	300360	300431	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000761:10;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	300360	300431	.	+	0	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000761:10;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	300432	302755	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000761:10;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	302756	302827	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000761:11;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	302756	302827	.	+	0	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000761:11;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	302828	305132	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000761:11;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	305133	305204	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000761:12;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	305133	305204	.	+	0	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000761:12;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	305205	314921	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000761:12;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	314922	314993	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000761:13;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	314922	314993	.	+	0	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000761:13;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	314994	317305	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000761:13;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	317306	317377	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000761:14;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	317306	317377	.	+	0	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000761:14;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	317378	319689	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000761:14;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	319690	319761	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000761:15;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	319690	319761	.	+	0	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000761:15;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	319762	322074	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000761:15;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	322075	322146	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000761:16;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	322075	322146	.	+	0	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000761:16;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	322147	324458	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000761:16;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	324459	324530	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000761:17;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	324459	324530	.	+	0	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000761:17;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	324531	326843	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000761:17;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	326844	326915	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000761:18;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	326844	326915	.	+	0	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000761:18;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	326916	327659	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000761:18;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	327660	327694	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000761:19;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	327660	327694	.	+	0	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000761:19;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	327695	332267	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000761:19;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	332268	332366	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000761:20;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	332268	332331	.	+	1	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:HG003_chrY_T0000761:20;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	stop_codon	332329	332331	.	+	0	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=stop_codon:HG003_chrY_T0000761;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	332367	336329	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:HG003_chrY_T0000761:20;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	336330	338186	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;alternative_source_transcripts=hg002_chrY_paternal_601.7,hg002_chrY_paternal_601.7;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000761;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:HG003_chrY_T0000761:21;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	357805	361142	.	+	.	source_gene_common_name=LOC105377239;source_gene=hg002_chrY_paternal_602;alternative_source_transcripts=hg002_chrY_paternal_602.1,hg002_chrY_paternal_602.1;gene_id=HG003_chrY_G0000286;gene_biotype=lncRNA;gene_name=LOC105377239;gene_sources=liftoff;ID=HG003_chrY_G0000286;Name=LOC105377239
HG003_chrY_random0000146	CAT	transcript	357805	361142	1000	+	.	source_transcript=hg002_chrY_paternal_602.1;source_transcript_name=hg002_chrY_paternal_602.1;source_gene=hg002_chrY_paternal_602;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_602;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_602.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_602.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377239;alternative_source_transcripts=hg002_chrY_paternal_602.1,hg002_chrY_paternal_602.1;transcript_id=HG003_chrY_T0000762;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_G0000286;transcript_name=hg002_chrY_paternal_602.1;gene_name=LOC105377239;ID=HG003_chrY_T0000762;Name=LOC105377239
HG003_chrY_random0000146	CAT	exon	357805	357983	.	+	.	source_transcript=hg002_chrY_paternal_602.1;source_transcript_name=hg002_chrY_paternal_602.1;source_gene=hg002_chrY_paternal_602;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_602;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_602.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_602.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377239;alternative_source_transcripts=hg002_chrY_paternal_602.1,hg002_chrY_paternal_602.1;transcript_id=HG003_chrY_T0000762;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000762;transcript_name=hg002_chrY_paternal_602.1;gene_name=LOC105377239;ID=exon:HG003_chrY_T0000762:0;Name=LOC105377239;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	357984	358645	.	+	.	source_transcript=hg002_chrY_paternal_602.1;source_transcript_name=hg002_chrY_paternal_602.1;source_gene=hg002_chrY_paternal_602;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_602;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_602.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_602.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377239;alternative_source_transcripts=hg002_chrY_paternal_602.1,hg002_chrY_paternal_602.1;transcript_id=HG003_chrY_T0000762;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000762;transcript_name=hg002_chrY_paternal_602.1;gene_name=LOC105377239;ID=intron:HG003_chrY_T0000762:0;Name=LOC105377239;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	358646	358710	.	+	.	source_transcript=hg002_chrY_paternal_602.1;source_transcript_name=hg002_chrY_paternal_602.1;source_gene=hg002_chrY_paternal_602;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_602;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_602.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_602.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377239;alternative_source_transcripts=hg002_chrY_paternal_602.1,hg002_chrY_paternal_602.1;transcript_id=HG003_chrY_T0000762;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000762;transcript_name=hg002_chrY_paternal_602.1;gene_name=LOC105377239;ID=exon:HG003_chrY_T0000762:1;Name=LOC105377239;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	358711	361041	.	+	.	source_transcript=hg002_chrY_paternal_602.1;source_transcript_name=hg002_chrY_paternal_602.1;source_gene=hg002_chrY_paternal_602;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_602;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_602.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_602.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377239;alternative_source_transcripts=hg002_chrY_paternal_602.1,hg002_chrY_paternal_602.1;transcript_id=HG003_chrY_T0000762;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000762;transcript_name=hg002_chrY_paternal_602.1;gene_name=LOC105377239;ID=intron:HG003_chrY_T0000762:1;Name=LOC105377239;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	361042	361142	.	+	.	source_transcript=hg002_chrY_paternal_602.1;source_transcript_name=hg002_chrY_paternal_602.1;source_gene=hg002_chrY_paternal_602;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_602;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_602.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_602.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377239;alternative_source_transcripts=hg002_chrY_paternal_602.1,hg002_chrY_paternal_602.1;transcript_id=HG003_chrY_T0000762;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000762;transcript_name=hg002_chrY_paternal_602.1;gene_name=LOC105377239;ID=exon:HG003_chrY_T0000762:2;Name=LOC105377239;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	357805	361142	1000	+	.	source_transcript=hg002_chrY_paternal_602.2;source_transcript_name=hg002_chrY_paternal_602.1;source_gene=hg002_chrY_paternal_602;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_602;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_602.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_602.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377239;alternative_source_transcripts=hg002_chrY_paternal_602.2,hg002_chrY_paternal_602.2;transcript_id=HG003_chrY_T0000763;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_G0000286;transcript_name=hg002_chrY_paternal_602.1;gene_name=LOC105377239;ID=HG003_chrY_T0000763;Name=LOC105377239
HG003_chrY_random0000146	CAT	exon	357805	357983	.	+	.	source_transcript=hg002_chrY_paternal_602.2;source_transcript_name=hg002_chrY_paternal_602.1;source_gene=hg002_chrY_paternal_602;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_602;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_602.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_602.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377239;alternative_source_transcripts=hg002_chrY_paternal_602.2,hg002_chrY_paternal_602.2;transcript_id=HG003_chrY_T0000763;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000763;transcript_name=hg002_chrY_paternal_602.1;gene_name=LOC105377239;ID=exon:HG003_chrY_T0000763:0;Name=LOC105377239;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	357984	358645	.	+	.	source_transcript=hg002_chrY_paternal_602.2;source_transcript_name=hg002_chrY_paternal_602.1;source_gene=hg002_chrY_paternal_602;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_602;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_602.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_602.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377239;alternative_source_transcripts=hg002_chrY_paternal_602.2,hg002_chrY_paternal_602.2;transcript_id=HG003_chrY_T0000763;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000763;transcript_name=hg002_chrY_paternal_602.1;gene_name=LOC105377239;ID=intron:HG003_chrY_T0000763:0;Name=LOC105377239;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	358646	358683	.	+	.	source_transcript=hg002_chrY_paternal_602.2;source_transcript_name=hg002_chrY_paternal_602.1;source_gene=hg002_chrY_paternal_602;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_602;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_602.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_602.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377239;alternative_source_transcripts=hg002_chrY_paternal_602.2,hg002_chrY_paternal_602.2;transcript_id=HG003_chrY_T0000763;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000763;transcript_name=hg002_chrY_paternal_602.1;gene_name=LOC105377239;ID=exon:HG003_chrY_T0000763:1;Name=LOC105377239;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	358684	361041	.	+	.	source_transcript=hg002_chrY_paternal_602.2;source_transcript_name=hg002_chrY_paternal_602.1;source_gene=hg002_chrY_paternal_602;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_602;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_602.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_602.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377239;alternative_source_transcripts=hg002_chrY_paternal_602.2,hg002_chrY_paternal_602.2;transcript_id=HG003_chrY_T0000763;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000763;transcript_name=hg002_chrY_paternal_602.1;gene_name=LOC105377239;ID=intron:HG003_chrY_T0000763:1;Name=LOC105377239;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	361042	361142	.	+	.	source_transcript=hg002_chrY_paternal_602.2;source_transcript_name=hg002_chrY_paternal_602.1;source_gene=hg002_chrY_paternal_602;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_602;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_602.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_602.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377239;alternative_source_transcripts=hg002_chrY_paternal_602.2,hg002_chrY_paternal_602.2;transcript_id=HG003_chrY_T0000763;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000763;transcript_name=hg002_chrY_paternal_602.1;gene_name=LOC105377239;ID=exon:HG003_chrY_T0000763:2;Name=LOC105377239;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	462076	483279	.	-	.	source_gene_common_name=BPY2;source_gene=hg002_chrY_paternal_607;alternative_source_transcripts=hg002_chrY_paternal_607.1,hg002_chrY_paternal_607.1;gene_id=HG003_chrY_G0000287;gene_biotype=protein_coding;gene_name=BPY2;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000287;Name=BPY2
HG003_chrY_random0000146	CAT	transcript	462076	483279	100	-	.	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=hg002_chrY_paternal_607.1,hg002_chrY_paternal_607.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000764;gene_id=HG003_chrY_G0000287;Parent=HG003_chrY_G0000287;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=HG003_chrY_T0000764;Name=BPY2
HG003_chrY_random0000146	CAT	exon	462076	462397	.	-	.	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=hg002_chrY_paternal_607.1,hg002_chrY_paternal_607.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000764;gene_id=HG003_chrY_G0000287;Parent=HG003_chrY_T0000764;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=exon:HG003_chrY_T0000764:0;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	462398	462491	.	-	.	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=hg002_chrY_paternal_607.1,hg002_chrY_paternal_607.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000764;gene_id=HG003_chrY_G0000287;Parent=HG003_chrY_T0000764;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=intron:HG003_chrY_T0000764:0;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	462492	462616	.	-	.	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=hg002_chrY_paternal_607.1,hg002_chrY_paternal_607.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000764;gene_id=HG003_chrY_G0000287;Parent=HG003_chrY_T0000764;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=exon:HG003_chrY_T0000764:1;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	462617	469166	.	-	.	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=hg002_chrY_paternal_607.1,hg002_chrY_paternal_607.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000764;gene_id=HG003_chrY_G0000287;Parent=HG003_chrY_T0000764;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=intron:HG003_chrY_T0000764:1;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	469167	469291	.	-	.	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=hg002_chrY_paternal_607.1,hg002_chrY_paternal_607.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000764;gene_id=HG003_chrY_G0000287;Parent=HG003_chrY_T0000764;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=exon:HG003_chrY_T0000764:2;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	469273	469291	.	-	1	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=hg002_chrY_paternal_607.1,hg002_chrY_paternal_607.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000764;gene_id=HG003_chrY_G0000287;Parent=HG003_chrY_T0000764;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=CDS:HG003_chrY_T0000764:0;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	stop_codon	469273	469275	.	-	0	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=hg002_chrY_paternal_607.1,hg002_chrY_paternal_607.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000764;gene_id=HG003_chrY_G0000287;Parent=HG003_chrY_T0000764;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=stop_codon:HG003_chrY_T0000764;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	469292	469983	.	-	.	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=hg002_chrY_paternal_607.1,hg002_chrY_paternal_607.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000764;gene_id=HG003_chrY_G0000287;Parent=HG003_chrY_T0000764;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=intron:HG003_chrY_T0000764:2;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	469984	470089	.	-	.	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=hg002_chrY_paternal_607.1,hg002_chrY_paternal_607.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000764;gene_id=HG003_chrY_G0000287;Parent=HG003_chrY_T0000764;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=exon:HG003_chrY_T0000764:3;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	469984	470089	.	-	2	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=hg002_chrY_paternal_607.1,hg002_chrY_paternal_607.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000764;gene_id=HG003_chrY_G0000287;Parent=HG003_chrY_T0000764;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=CDS:HG003_chrY_T0000764:1;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	470090	472943	.	-	.	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=hg002_chrY_paternal_607.1,hg002_chrY_paternal_607.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000764;gene_id=HG003_chrY_G0000287;Parent=HG003_chrY_T0000764;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=intron:HG003_chrY_T0000764:3;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	472944	473061	.	-	.	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=hg002_chrY_paternal_607.1,hg002_chrY_paternal_607.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000764;gene_id=HG003_chrY_G0000287;Parent=HG003_chrY_T0000764;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=exon:HG003_chrY_T0000764:4;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	472944	473061	.	-	0	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=hg002_chrY_paternal_607.1,hg002_chrY_paternal_607.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000764;gene_id=HG003_chrY_G0000287;Parent=HG003_chrY_T0000764;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=CDS:HG003_chrY_T0000764:2;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	473062	475120	.	-	.	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=hg002_chrY_paternal_607.1,hg002_chrY_paternal_607.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000764;gene_id=HG003_chrY_G0000287;Parent=HG003_chrY_T0000764;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=intron:HG003_chrY_T0000764:4;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	475121	475239	.	-	.	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=hg002_chrY_paternal_607.1,hg002_chrY_paternal_607.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000764;gene_id=HG003_chrY_G0000287;Parent=HG003_chrY_T0000764;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=exon:HG003_chrY_T0000764:5;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	475121	475198	.	-	0	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=hg002_chrY_paternal_607.1,hg002_chrY_paternal_607.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000764;gene_id=HG003_chrY_G0000287;Parent=HG003_chrY_T0000764;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=CDS:HG003_chrY_T0000764:3;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	start_codon	475196	475198	.	-	0	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=hg002_chrY_paternal_607.1,hg002_chrY_paternal_607.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000764;gene_id=HG003_chrY_G0000287;Parent=HG003_chrY_T0000764;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=start_codon:HG003_chrY_T0000764;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	475240	479648	.	-	.	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=hg002_chrY_paternal_607.1,hg002_chrY_paternal_607.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000764;gene_id=HG003_chrY_G0000287;Parent=HG003_chrY_T0000764;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=intron:HG003_chrY_T0000764:5;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	479649	479785	.	-	.	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=hg002_chrY_paternal_607.1,hg002_chrY_paternal_607.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000764;gene_id=HG003_chrY_G0000287;Parent=HG003_chrY_T0000764;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=exon:HG003_chrY_T0000764:6;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	479786	482850	.	-	.	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=hg002_chrY_paternal_607.1,hg002_chrY_paternal_607.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000764;gene_id=HG003_chrY_G0000287;Parent=HG003_chrY_T0000764;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=intron:HG003_chrY_T0000764:6;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	482851	482973	.	-	.	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=hg002_chrY_paternal_607.1,hg002_chrY_paternal_607.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000764;gene_id=HG003_chrY_G0000287;Parent=HG003_chrY_T0000764;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=exon:HG003_chrY_T0000764:7;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	482974	483248	.	-	.	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=hg002_chrY_paternal_607.1,hg002_chrY_paternal_607.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000764;gene_id=HG003_chrY_G0000287;Parent=HG003_chrY_T0000764;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=intron:HG003_chrY_T0000764:7;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	483249	483279	.	-	.	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=hg002_chrY_paternal_607.1,hg002_chrY_paternal_607.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000764;gene_id=HG003_chrY_G0000287;Parent=HG003_chrY_T0000764;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=exon:HG003_chrY_T0000764:8;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	494258	531077	.	-	.	source_gene_common_name=TTTY4B;source_gene=hg002_chrY_paternal_608;alternative_source_transcripts=hg002_chrY_paternal_608.1,hg002_chrY_paternal_608.1;gene_id=HG003_chrY_G0000288;gene_biotype=lncRNA;gene_name=TTTY4B;gene_sources=liftoff;ID=HG003_chrY_G0000288;Name=TTTY4B
HG003_chrY_random0000146	CAT	transcript	494258	531077	1000	-	.	source_transcript=hg002_chrY_paternal_608.1;source_transcript_name=hg002_chrY_paternal_608.1;source_gene=hg002_chrY_paternal_608;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_608;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_608.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_608.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4B;alternative_source_transcripts=hg002_chrY_paternal_608.1,hg002_chrY_paternal_608.1;transcript_id=HG003_chrY_T0000765;gene_id=HG003_chrY_G0000288;Parent=HG003_chrY_G0000288;transcript_name=hg002_chrY_paternal_608.1;gene_name=TTTY4B;ID=HG003_chrY_T0000765;Name=TTTY4B
HG003_chrY_random0000146	CAT	exon	494258	495258	.	-	.	source_transcript=hg002_chrY_paternal_608.1;source_transcript_name=hg002_chrY_paternal_608.1;source_gene=hg002_chrY_paternal_608;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_608;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_608.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_608.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4B;alternative_source_transcripts=hg002_chrY_paternal_608.1,hg002_chrY_paternal_608.1;transcript_id=HG003_chrY_T0000765;gene_id=HG003_chrY_G0000288;Parent=HG003_chrY_T0000765;transcript_name=hg002_chrY_paternal_608.1;gene_name=TTTY4B;ID=exon:HG003_chrY_T0000765:0;Name=TTTY4B;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	495259	501926	.	-	.	source_transcript=hg002_chrY_paternal_608.1;source_transcript_name=hg002_chrY_paternal_608.1;source_gene=hg002_chrY_paternal_608;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_608;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_608.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_608.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4B;alternative_source_transcripts=hg002_chrY_paternal_608.1,hg002_chrY_paternal_608.1;transcript_id=HG003_chrY_T0000765;gene_id=HG003_chrY_G0000288;Parent=HG003_chrY_T0000765;transcript_name=hg002_chrY_paternal_608.1;gene_name=TTTY4B;ID=intron:HG003_chrY_T0000765:0;Name=TTTY4B;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	501927	502034	.	-	.	source_transcript=hg002_chrY_paternal_608.1;source_transcript_name=hg002_chrY_paternal_608.1;source_gene=hg002_chrY_paternal_608;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_608;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_608.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_608.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4B;alternative_source_transcripts=hg002_chrY_paternal_608.1,hg002_chrY_paternal_608.1;transcript_id=HG003_chrY_T0000765;gene_id=HG003_chrY_G0000288;Parent=HG003_chrY_T0000765;transcript_name=hg002_chrY_paternal_608.1;gene_name=TTTY4B;ID=exon:HG003_chrY_T0000765:1;Name=TTTY4B;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	502035	503838	.	-	.	source_transcript=hg002_chrY_paternal_608.1;source_transcript_name=hg002_chrY_paternal_608.1;source_gene=hg002_chrY_paternal_608;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_608;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_608.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_608.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4B;alternative_source_transcripts=hg002_chrY_paternal_608.1,hg002_chrY_paternal_608.1;transcript_id=HG003_chrY_T0000765;gene_id=HG003_chrY_G0000288;Parent=HG003_chrY_T0000765;transcript_name=hg002_chrY_paternal_608.1;gene_name=TTTY4B;ID=intron:HG003_chrY_T0000765:1;Name=TTTY4B;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	503839	503914	.	-	.	source_transcript=hg002_chrY_paternal_608.1;source_transcript_name=hg002_chrY_paternal_608.1;source_gene=hg002_chrY_paternal_608;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_608;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_608.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_608.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4B;alternative_source_transcripts=hg002_chrY_paternal_608.1,hg002_chrY_paternal_608.1;transcript_id=HG003_chrY_T0000765;gene_id=HG003_chrY_G0000288;Parent=HG003_chrY_T0000765;transcript_name=hg002_chrY_paternal_608.1;gene_name=TTTY4B;ID=exon:HG003_chrY_T0000765:2;Name=TTTY4B;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	503915	530916	.	-	.	source_transcript=hg002_chrY_paternal_608.1;source_transcript_name=hg002_chrY_paternal_608.1;source_gene=hg002_chrY_paternal_608;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_608;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_608.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_608.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4B;alternative_source_transcripts=hg002_chrY_paternal_608.1,hg002_chrY_paternal_608.1;transcript_id=HG003_chrY_T0000765;gene_id=HG003_chrY_G0000288;Parent=HG003_chrY_T0000765;transcript_name=hg002_chrY_paternal_608.1;gene_name=TTTY4B;ID=intron:HG003_chrY_T0000765:2;Name=TTTY4B;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	530917	531077	.	-	.	source_transcript=hg002_chrY_paternal_608.1;source_transcript_name=hg002_chrY_paternal_608.1;source_gene=hg002_chrY_paternal_608;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_608;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_608.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_608.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4B;alternative_source_transcripts=hg002_chrY_paternal_608.1,hg002_chrY_paternal_608.1;transcript_id=HG003_chrY_T0000765;gene_id=HG003_chrY_G0000288;Parent=HG003_chrY_T0000765;transcript_name=hg002_chrY_paternal_608.1;gene_name=TTTY4B;ID=exon:HG003_chrY_T0000765:3;Name=TTTY4B;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	614830	615961	.	-	.	source_gene_common_name=TTTY17B;source_gene=hg002_chrY_paternal_611;alternative_source_transcripts=hg002_chrY_paternal_611.1,hg002_chrY_paternal_611.1;gene_id=HG003_chrY_G0000289;gene_biotype=lncRNA;gene_name=TTTY17B;gene_sources=liftoff;ID=HG003_chrY_G0000289;Name=TTTY17B
HG003_chrY_random0000146	CAT	transcript	614830	615961	1000	-	.	source_transcript=hg002_chrY_paternal_611.1;source_transcript_name=hg002_chrY_paternal_611.1;source_gene=hg002_chrY_paternal_611;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_611;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_611.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_611.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17B;alternative_source_transcripts=hg002_chrY_paternal_611.1,hg002_chrY_paternal_611.1;transcript_id=HG003_chrY_T0000766;gene_id=HG003_chrY_G0000289;Parent=HG003_chrY_G0000289;transcript_name=hg002_chrY_paternal_611.1;gene_name=TTTY17B;ID=HG003_chrY_T0000766;Name=TTTY17B
HG003_chrY_random0000146	CAT	exon	614830	614935	.	-	.	source_transcript=hg002_chrY_paternal_611.1;source_transcript_name=hg002_chrY_paternal_611.1;source_gene=hg002_chrY_paternal_611;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_611;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_611.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_611.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17B;alternative_source_transcripts=hg002_chrY_paternal_611.1,hg002_chrY_paternal_611.1;transcript_id=HG003_chrY_T0000766;gene_id=HG003_chrY_G0000289;Parent=HG003_chrY_T0000766;transcript_name=hg002_chrY_paternal_611.1;gene_name=TTTY17B;ID=exon:HG003_chrY_T0000766:0;Name=TTTY17B;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	614936	615901	.	-	.	source_transcript=hg002_chrY_paternal_611.1;source_transcript_name=hg002_chrY_paternal_611.1;source_gene=hg002_chrY_paternal_611;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_611;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_611.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_611.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17B;alternative_source_transcripts=hg002_chrY_paternal_611.1,hg002_chrY_paternal_611.1;transcript_id=HG003_chrY_T0000766;gene_id=HG003_chrY_G0000289;Parent=HG003_chrY_T0000766;transcript_name=hg002_chrY_paternal_611.1;gene_name=TTTY17B;ID=intron:HG003_chrY_T0000766:0;Name=TTTY17B;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	615902	615961	.	-	.	source_transcript=hg002_chrY_paternal_611.1;source_transcript_name=hg002_chrY_paternal_611.1;source_gene=hg002_chrY_paternal_611;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_611;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_611.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_611.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17B;alternative_source_transcripts=hg002_chrY_paternal_611.1,hg002_chrY_paternal_611.1;transcript_id=HG003_chrY_T0000766;gene_id=HG003_chrY_G0000289;Parent=HG003_chrY_T0000766;transcript_name=hg002_chrY_paternal_611.1;gene_name=TTTY17B;ID=exon:HG003_chrY_T0000766:1;Name=TTTY17B;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	668230	681335	.	-	.	source_gene_common_name=LOC107987350;source_gene=hg002_chrY_paternal_612;alternative_source_transcripts=hg002_chrY_paternal_612.1,hg002_chrY_paternal_612.1;gene_id=HG003_chrY_G0000290;gene_biotype=lncRNA;gene_name=LOC107987350;gene_sources=liftoff;ID=HG003_chrY_G0000290;Name=LOC107987350
HG003_chrY_random0000146	CAT	transcript	668230	681335	1000	-	.	source_transcript=hg002_chrY_paternal_612.1;source_transcript_name=hg002_chrY_paternal_612.1;source_gene=hg002_chrY_paternal_612;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_612;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_612.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_612.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;alternative_source_transcripts=hg002_chrY_paternal_612.1,hg002_chrY_paternal_612.1;transcript_id=HG003_chrY_T0000767;gene_id=HG003_chrY_G0000290;Parent=HG003_chrY_G0000290;transcript_name=hg002_chrY_paternal_612.1;gene_name=LOC107987350;ID=HG003_chrY_T0000767;Name=LOC107987350
HG003_chrY_random0000146	CAT	exon	668230	672103	.	-	.	source_transcript=hg002_chrY_paternal_612.1;source_transcript_name=hg002_chrY_paternal_612.1;source_gene=hg002_chrY_paternal_612;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_612;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_612.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_612.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;alternative_source_transcripts=hg002_chrY_paternal_612.1,hg002_chrY_paternal_612.1;transcript_id=HG003_chrY_T0000767;gene_id=HG003_chrY_G0000290;Parent=HG003_chrY_T0000767;transcript_name=hg002_chrY_paternal_612.1;gene_name=LOC107987350;ID=exon:HG003_chrY_T0000767:0;Name=LOC107987350;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	672104	672744	.	-	.	source_transcript=hg002_chrY_paternal_612.1;source_transcript_name=hg002_chrY_paternal_612.1;source_gene=hg002_chrY_paternal_612;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_612;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_612.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_612.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;alternative_source_transcripts=hg002_chrY_paternal_612.1,hg002_chrY_paternal_612.1;transcript_id=HG003_chrY_T0000767;gene_id=HG003_chrY_G0000290;Parent=HG003_chrY_T0000767;transcript_name=hg002_chrY_paternal_612.1;gene_name=LOC107987350;ID=intron:HG003_chrY_T0000767:0;Name=LOC107987350;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	672745	674909	.	-	.	source_transcript=hg002_chrY_paternal_612.1;source_transcript_name=hg002_chrY_paternal_612.1;source_gene=hg002_chrY_paternal_612;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_612;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_612.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_612.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;alternative_source_transcripts=hg002_chrY_paternal_612.1,hg002_chrY_paternal_612.1;transcript_id=HG003_chrY_T0000767;gene_id=HG003_chrY_G0000290;Parent=HG003_chrY_T0000767;transcript_name=hg002_chrY_paternal_612.1;gene_name=LOC107987350;ID=exon:HG003_chrY_T0000767:1;Name=LOC107987350;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	674910	680879	.	-	.	source_transcript=hg002_chrY_paternal_612.1;source_transcript_name=hg002_chrY_paternal_612.1;source_gene=hg002_chrY_paternal_612;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_612;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_612.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_612.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;alternative_source_transcripts=hg002_chrY_paternal_612.1,hg002_chrY_paternal_612.1;transcript_id=HG003_chrY_T0000767;gene_id=HG003_chrY_G0000290;Parent=HG003_chrY_T0000767;transcript_name=hg002_chrY_paternal_612.1;gene_name=LOC107987350;ID=intron:HG003_chrY_T0000767:1;Name=LOC107987350;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	680880	681335	.	-	.	source_transcript=hg002_chrY_paternal_612.1;source_transcript_name=hg002_chrY_paternal_612.1;source_gene=hg002_chrY_paternal_612;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_612;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_612.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_612.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;alternative_source_transcripts=hg002_chrY_paternal_612.1,hg002_chrY_paternal_612.1;transcript_id=HG003_chrY_T0000767;gene_id=HG003_chrY_G0000290;Parent=HG003_chrY_T0000767;transcript_name=hg002_chrY_paternal_612.1;gene_name=LOC107987350;ID=exon:HG003_chrY_T0000767:2;Name=LOC107987350;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	668230	681335	1000	-	.	source_transcript=hg002_chrY_paternal_612.2;source_transcript_name=hg002_chrY_paternal_612.1;source_gene=hg002_chrY_paternal_612;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_612;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_612.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_612.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;alternative_source_transcripts=hg002_chrY_paternal_612.2,hg002_chrY_paternal_612.2;transcript_id=HG003_chrY_T0000768;gene_id=HG003_chrY_G0000290;Parent=HG003_chrY_G0000290;transcript_name=hg002_chrY_paternal_612.1;gene_name=LOC107987350;ID=HG003_chrY_T0000768;Name=LOC107987350
HG003_chrY_random0000146	CAT	exon	668230	672103	.	-	.	source_transcript=hg002_chrY_paternal_612.2;source_transcript_name=hg002_chrY_paternal_612.1;source_gene=hg002_chrY_paternal_612;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_612;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_612.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_612.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;alternative_source_transcripts=hg002_chrY_paternal_612.2,hg002_chrY_paternal_612.2;transcript_id=HG003_chrY_T0000768;gene_id=HG003_chrY_G0000290;Parent=HG003_chrY_T0000768;transcript_name=hg002_chrY_paternal_612.1;gene_name=LOC107987350;ID=exon:HG003_chrY_T0000768:0;Name=LOC107987350;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	672104	672744	.	-	.	source_transcript=hg002_chrY_paternal_612.2;source_transcript_name=hg002_chrY_paternal_612.1;source_gene=hg002_chrY_paternal_612;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_612;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_612.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_612.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;alternative_source_transcripts=hg002_chrY_paternal_612.2,hg002_chrY_paternal_612.2;transcript_id=HG003_chrY_T0000768;gene_id=HG003_chrY_G0000290;Parent=HG003_chrY_T0000768;transcript_name=hg002_chrY_paternal_612.1;gene_name=LOC107987350;ID=intron:HG003_chrY_T0000768:0;Name=LOC107987350;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	672745	675377	.	-	.	source_transcript=hg002_chrY_paternal_612.2;source_transcript_name=hg002_chrY_paternal_612.1;source_gene=hg002_chrY_paternal_612;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_612;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_612.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_612.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;alternative_source_transcripts=hg002_chrY_paternal_612.2,hg002_chrY_paternal_612.2;transcript_id=HG003_chrY_T0000768;gene_id=HG003_chrY_G0000290;Parent=HG003_chrY_T0000768;transcript_name=hg002_chrY_paternal_612.1;gene_name=LOC107987350;ID=exon:HG003_chrY_T0000768:1;Name=LOC107987350;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	675378	680879	.	-	.	source_transcript=hg002_chrY_paternal_612.2;source_transcript_name=hg002_chrY_paternal_612.1;source_gene=hg002_chrY_paternal_612;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_612;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_612.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_612.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;alternative_source_transcripts=hg002_chrY_paternal_612.2,hg002_chrY_paternal_612.2;transcript_id=HG003_chrY_T0000768;gene_id=HG003_chrY_G0000290;Parent=HG003_chrY_T0000768;transcript_name=hg002_chrY_paternal_612.1;gene_name=LOC107987350;ID=intron:HG003_chrY_T0000768:1;Name=LOC107987350;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	680880	681335	.	-	.	source_transcript=hg002_chrY_paternal_612.2;source_transcript_name=hg002_chrY_paternal_612.1;source_gene=hg002_chrY_paternal_612;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_612;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_612.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_612.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;alternative_source_transcripts=hg002_chrY_paternal_612.2,hg002_chrY_paternal_612.2;transcript_id=HG003_chrY_T0000768;gene_id=HG003_chrY_G0000290;Parent=HG003_chrY_T0000768;transcript_name=hg002_chrY_paternal_612.1;gene_name=LOC107987350;ID=exon:HG003_chrY_T0000768:2;Name=LOC107987350;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	770094	771727	.	-	.	source_gene_common_name=LOC101928626;source_gene=hg002_chrY_paternal_615;alternative_source_transcripts=hg002_chrY_paternal_615.1,hg002_chrY_paternal_615.1;gene_id=HG003_chrY_G0000291;gene_biotype=lncRNA;gene_name=LOC101928626;gene_sources=liftoff;ID=HG003_chrY_G0000291;Name=LOC101928626
HG003_chrY_random0000146	CAT	transcript	770094	771727	1000	-	.	source_transcript=hg002_chrY_paternal_615.1;source_transcript_name=hg002_chrY_paternal_615.1;source_gene=hg002_chrY_paternal_615;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_615;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_615.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_615.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928626;alternative_source_transcripts=hg002_chrY_paternal_615.1,hg002_chrY_paternal_615.1;transcript_id=HG003_chrY_T0000769;gene_id=HG003_chrY_G0000291;Parent=HG003_chrY_G0000291;transcript_name=hg002_chrY_paternal_615.1;gene_name=LOC101928626;ID=HG003_chrY_T0000769;Name=LOC101928626
HG003_chrY_random0000146	CAT	exon	770094	770537	.	-	.	source_transcript=hg002_chrY_paternal_615.1;source_transcript_name=hg002_chrY_paternal_615.1;source_gene=hg002_chrY_paternal_615;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_615;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_615.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_615.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928626;alternative_source_transcripts=hg002_chrY_paternal_615.1,hg002_chrY_paternal_615.1;transcript_id=HG003_chrY_T0000769;gene_id=HG003_chrY_G0000291;Parent=HG003_chrY_T0000769;transcript_name=hg002_chrY_paternal_615.1;gene_name=LOC101928626;ID=exon:HG003_chrY_T0000769:0;Name=LOC101928626;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	770538	770674	.	-	.	source_transcript=hg002_chrY_paternal_615.1;source_transcript_name=hg002_chrY_paternal_615.1;source_gene=hg002_chrY_paternal_615;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_615;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_615.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_615.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928626;alternative_source_transcripts=hg002_chrY_paternal_615.1,hg002_chrY_paternal_615.1;transcript_id=HG003_chrY_T0000769;gene_id=HG003_chrY_G0000291;Parent=HG003_chrY_T0000769;transcript_name=hg002_chrY_paternal_615.1;gene_name=LOC101928626;ID=intron:HG003_chrY_T0000769:0;Name=LOC101928626;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	770675	770941	.	-	.	source_transcript=hg002_chrY_paternal_615.1;source_transcript_name=hg002_chrY_paternal_615.1;source_gene=hg002_chrY_paternal_615;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_615;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_615.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_615.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928626;alternative_source_transcripts=hg002_chrY_paternal_615.1,hg002_chrY_paternal_615.1;transcript_id=HG003_chrY_T0000769;gene_id=HG003_chrY_G0000291;Parent=HG003_chrY_T0000769;transcript_name=hg002_chrY_paternal_615.1;gene_name=LOC101928626;ID=exon:HG003_chrY_T0000769:1;Name=LOC101928626;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	770942	771636	.	-	.	source_transcript=hg002_chrY_paternal_615.1;source_transcript_name=hg002_chrY_paternal_615.1;source_gene=hg002_chrY_paternal_615;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_615;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_615.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_615.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928626;alternative_source_transcripts=hg002_chrY_paternal_615.1,hg002_chrY_paternal_615.1;transcript_id=HG003_chrY_T0000769;gene_id=HG003_chrY_G0000291;Parent=HG003_chrY_T0000769;transcript_name=hg002_chrY_paternal_615.1;gene_name=LOC101928626;ID=intron:HG003_chrY_T0000769:1;Name=LOC101928626;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	771637	771727	.	-	.	source_transcript=hg002_chrY_paternal_615.1;source_transcript_name=hg002_chrY_paternal_615.1;source_gene=hg002_chrY_paternal_615;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_615;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_615.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_615.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928626;alternative_source_transcripts=hg002_chrY_paternal_615.1,hg002_chrY_paternal_615.1;transcript_id=HG003_chrY_T0000769;gene_id=HG003_chrY_G0000291;Parent=HG003_chrY_T0000769;transcript_name=hg002_chrY_paternal_615.1;gene_name=LOC101928626;ID=exon:HG003_chrY_T0000769:2;Name=LOC101928626;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	779608	790597	.	+	.	source_gene_common_name=LOC107987240;source_gene=hg002_chrY_paternal_616;alternative_source_transcripts=hg002_chrY_paternal_616.1,hg002_chrY_paternal_616.1;gene_id=HG003_chrY_G0000292;gene_biotype=lncRNA;gene_name=LOC107987240;gene_sources=liftoff;ID=HG003_chrY_G0000292;Name=LOC107987240
HG003_chrY_random0000146	CAT	transcript	779608	790597	1000	+	.	source_transcript=hg002_chrY_paternal_616.1;source_transcript_name=hg002_chrY_paternal_616.1;source_gene=hg002_chrY_paternal_616;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_616;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_616.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_616.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987240;alternative_source_transcripts=hg002_chrY_paternal_616.1,hg002_chrY_paternal_616.1;transcript_id=HG003_chrY_T0000770;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_G0000292;transcript_name=hg002_chrY_paternal_616.1;gene_name=LOC107987240;ID=HG003_chrY_T0000770;Name=LOC107987240
HG003_chrY_random0000146	CAT	exon	779608	779839	.	+	.	source_transcript=hg002_chrY_paternal_616.1;source_transcript_name=hg002_chrY_paternal_616.1;source_gene=hg002_chrY_paternal_616;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_616;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_616.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_616.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987240;alternative_source_transcripts=hg002_chrY_paternal_616.1,hg002_chrY_paternal_616.1;transcript_id=HG003_chrY_T0000770;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000770;transcript_name=hg002_chrY_paternal_616.1;gene_name=LOC107987240;ID=exon:HG003_chrY_T0000770:0;Name=LOC107987240;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	779840	789623	.	+	.	source_transcript=hg002_chrY_paternal_616.1;source_transcript_name=hg002_chrY_paternal_616.1;source_gene=hg002_chrY_paternal_616;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_616;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_616.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_616.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987240;alternative_source_transcripts=hg002_chrY_paternal_616.1,hg002_chrY_paternal_616.1;transcript_id=HG003_chrY_T0000770;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000770;transcript_name=hg002_chrY_paternal_616.1;gene_name=LOC107987240;ID=intron:HG003_chrY_T0000770:0;Name=LOC107987240;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	789624	789730	.	+	.	source_transcript=hg002_chrY_paternal_616.1;source_transcript_name=hg002_chrY_paternal_616.1;source_gene=hg002_chrY_paternal_616;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_616;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_616.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_616.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987240;alternative_source_transcripts=hg002_chrY_paternal_616.1,hg002_chrY_paternal_616.1;transcript_id=HG003_chrY_T0000770;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000770;transcript_name=hg002_chrY_paternal_616.1;gene_name=LOC107987240;ID=exon:HG003_chrY_T0000770:1;Name=LOC107987240;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	789731	789939	.	+	.	source_transcript=hg002_chrY_paternal_616.1;source_transcript_name=hg002_chrY_paternal_616.1;source_gene=hg002_chrY_paternal_616;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_616;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_616.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_616.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987240;alternative_source_transcripts=hg002_chrY_paternal_616.1,hg002_chrY_paternal_616.1;transcript_id=HG003_chrY_T0000770;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000770;transcript_name=hg002_chrY_paternal_616.1;gene_name=LOC107987240;ID=intron:HG003_chrY_T0000770:1;Name=LOC107987240;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	789940	790597	.	+	.	source_transcript=hg002_chrY_paternal_616.1;source_transcript_name=hg002_chrY_paternal_616.1;source_gene=hg002_chrY_paternal_616;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_616;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_616.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_616.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987240;alternative_source_transcripts=hg002_chrY_paternal_616.1,hg002_chrY_paternal_616.1;transcript_id=HG003_chrY_T0000770;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000770;transcript_name=hg002_chrY_paternal_616.1;gene_name=LOC107987240;ID=exon:HG003_chrY_T0000770:2;Name=LOC107987240;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	809459	825876	.	-	.	source_gene_common_name=SEPTIN14P23;source_gene=hg002_chrY_paternal_617;alternative_source_transcripts=hg002_chrY_paternal_617.1,hg002_chrY_paternal_617.1;gene_id=HG003_chrY_G0000293;gene_biotype=transcribed_pseudogene;gene_name=SEPTIN14P23;gene_sources=liftoff;ID=HG003_chrY_G0000293;Name=SEPTIN14P23
HG003_chrY_random0000146	CAT	transcript	809459	825876	1000	-	.	source_transcript=hg002_chrY_paternal_617.1;source_transcript_name=hg002_chrY_paternal_617.1;source_gene=hg002_chrY_paternal_617;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_617;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_617.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_617.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SEPTIN14P23;alternative_source_transcripts=hg002_chrY_paternal_617.1,hg002_chrY_paternal_617.1;transcript_id=HG003_chrY_T0000771;gene_id=HG003_chrY_G0000293;Parent=HG003_chrY_G0000293;transcript_name=hg002_chrY_paternal_617.1;gene_name=SEPTIN14P23;ID=HG003_chrY_T0000771;Name=SEPTIN14P23
HG003_chrY_random0000146	CAT	exon	809459	810037	.	-	.	source_transcript=hg002_chrY_paternal_617.1;source_transcript_name=hg002_chrY_paternal_617.1;source_gene=hg002_chrY_paternal_617;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_617;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_617.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_617.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SEPTIN14P23;alternative_source_transcripts=hg002_chrY_paternal_617.1,hg002_chrY_paternal_617.1;transcript_id=HG003_chrY_T0000771;gene_id=HG003_chrY_G0000293;Parent=HG003_chrY_T0000771;transcript_name=hg002_chrY_paternal_617.1;gene_name=SEPTIN14P23;ID=exon:HG003_chrY_T0000771:0;Name=SEPTIN14P23;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	810038	818073	.	-	.	source_transcript=hg002_chrY_paternal_617.1;source_transcript_name=hg002_chrY_paternal_617.1;source_gene=hg002_chrY_paternal_617;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_617;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_617.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_617.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SEPTIN14P23;alternative_source_transcripts=hg002_chrY_paternal_617.1,hg002_chrY_paternal_617.1;transcript_id=HG003_chrY_T0000771;gene_id=HG003_chrY_G0000293;Parent=HG003_chrY_T0000771;transcript_name=hg002_chrY_paternal_617.1;gene_name=SEPTIN14P23;ID=intron:HG003_chrY_T0000771:0;Name=SEPTIN14P23;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	818074	818242	.	-	.	source_transcript=hg002_chrY_paternal_617.1;source_transcript_name=hg002_chrY_paternal_617.1;source_gene=hg002_chrY_paternal_617;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_617;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_617.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_617.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SEPTIN14P23;alternative_source_transcripts=hg002_chrY_paternal_617.1,hg002_chrY_paternal_617.1;transcript_id=HG003_chrY_T0000771;gene_id=HG003_chrY_G0000293;Parent=HG003_chrY_T0000771;transcript_name=hg002_chrY_paternal_617.1;gene_name=SEPTIN14P23;ID=exon:HG003_chrY_T0000771:1;Name=SEPTIN14P23;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	818243	825782	.	-	.	source_transcript=hg002_chrY_paternal_617.1;source_transcript_name=hg002_chrY_paternal_617.1;source_gene=hg002_chrY_paternal_617;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_617;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_617.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_617.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SEPTIN14P23;alternative_source_transcripts=hg002_chrY_paternal_617.1,hg002_chrY_paternal_617.1;transcript_id=HG003_chrY_T0000771;gene_id=HG003_chrY_G0000293;Parent=HG003_chrY_T0000771;transcript_name=hg002_chrY_paternal_617.1;gene_name=SEPTIN14P23;ID=intron:HG003_chrY_T0000771:1;Name=SEPTIN14P23;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	825783	825876	.	-	.	source_transcript=hg002_chrY_paternal_617.1;source_transcript_name=hg002_chrY_paternal_617.1;source_gene=hg002_chrY_paternal_617;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_617;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_617.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_617.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SEPTIN14P23;alternative_source_transcripts=hg002_chrY_paternal_617.1,hg002_chrY_paternal_617.1;transcript_id=HG003_chrY_T0000771;gene_id=HG003_chrY_G0000293;Parent=HG003_chrY_T0000771;transcript_name=hg002_chrY_paternal_617.1;gene_name=SEPTIN14P23;ID=exon:HG003_chrY_T0000771:2;Name=SEPTIN14P23;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	886466	891330	.	+	.	source_gene_common_name=GOLGA2P3Y;source_gene=hg002_chrY_paternal_624;alternative_source_transcripts=hg002_chrY_paternal_624.1,hg002_chrY_paternal_624.1;gene_id=HG003_chrY_G0000294;gene_biotype=transcribed_pseudogene;gene_name=GOLGA2P3Y;gene_sources=liftoff;ID=HG003_chrY_G0000294;Name=GOLGA2P3Y
HG003_chrY_random0000146	CAT	transcript	886466	891330	1000	+	.	source_transcript=hg002_chrY_paternal_624.1;source_transcript_name=hg002_chrY_paternal_624.1;source_gene=hg002_chrY_paternal_624;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_624;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_624.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_624.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;alternative_source_transcripts=hg002_chrY_paternal_624.1,hg002_chrY_paternal_624.1;transcript_id=HG003_chrY_T0000772;gene_id=HG003_chrY_G0000294;Parent=HG003_chrY_G0000294;transcript_name=hg002_chrY_paternal_624.1;gene_name=GOLGA2P3Y;ID=HG003_chrY_T0000772;Name=GOLGA2P3Y
HG003_chrY_random0000146	CAT	exon	886466	886508	.	+	.	source_transcript=hg002_chrY_paternal_624.1;source_transcript_name=hg002_chrY_paternal_624.1;source_gene=hg002_chrY_paternal_624;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_624;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_624.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_624.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;alternative_source_transcripts=hg002_chrY_paternal_624.1,hg002_chrY_paternal_624.1;transcript_id=HG003_chrY_T0000772;gene_id=HG003_chrY_G0000294;Parent=HG003_chrY_T0000772;transcript_name=hg002_chrY_paternal_624.1;gene_name=GOLGA2P3Y;ID=exon:HG003_chrY_T0000772:0;Name=GOLGA2P3Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	886509	886694	.	+	.	source_transcript=hg002_chrY_paternal_624.1;source_transcript_name=hg002_chrY_paternal_624.1;source_gene=hg002_chrY_paternal_624;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_624;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_624.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_624.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;alternative_source_transcripts=hg002_chrY_paternal_624.1,hg002_chrY_paternal_624.1;transcript_id=HG003_chrY_T0000772;gene_id=HG003_chrY_G0000294;Parent=HG003_chrY_T0000772;transcript_name=hg002_chrY_paternal_624.1;gene_name=GOLGA2P3Y;ID=intron:HG003_chrY_T0000772:0;Name=GOLGA2P3Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	886695	886773	.	+	.	source_transcript=hg002_chrY_paternal_624.1;source_transcript_name=hg002_chrY_paternal_624.1;source_gene=hg002_chrY_paternal_624;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_624;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_624.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_624.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;alternative_source_transcripts=hg002_chrY_paternal_624.1,hg002_chrY_paternal_624.1;transcript_id=HG003_chrY_T0000772;gene_id=HG003_chrY_G0000294;Parent=HG003_chrY_T0000772;transcript_name=hg002_chrY_paternal_624.1;gene_name=GOLGA2P3Y;ID=exon:HG003_chrY_T0000772:1;Name=GOLGA2P3Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	886774	887892	.	+	.	source_transcript=hg002_chrY_paternal_624.1;source_transcript_name=hg002_chrY_paternal_624.1;source_gene=hg002_chrY_paternal_624;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_624;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_624.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_624.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;alternative_source_transcripts=hg002_chrY_paternal_624.1,hg002_chrY_paternal_624.1;transcript_id=HG003_chrY_T0000772;gene_id=HG003_chrY_G0000294;Parent=HG003_chrY_T0000772;transcript_name=hg002_chrY_paternal_624.1;gene_name=GOLGA2P3Y;ID=intron:HG003_chrY_T0000772:1;Name=GOLGA2P3Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	887893	888244	.	+	.	source_transcript=hg002_chrY_paternal_624.1;source_transcript_name=hg002_chrY_paternal_624.1;source_gene=hg002_chrY_paternal_624;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_624;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_624.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_624.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;alternative_source_transcripts=hg002_chrY_paternal_624.1,hg002_chrY_paternal_624.1;transcript_id=HG003_chrY_T0000772;gene_id=HG003_chrY_G0000294;Parent=HG003_chrY_T0000772;transcript_name=hg002_chrY_paternal_624.1;gene_name=GOLGA2P3Y;ID=exon:HG003_chrY_T0000772:2;Name=GOLGA2P3Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	888245	888540	.	+	.	source_transcript=hg002_chrY_paternal_624.1;source_transcript_name=hg002_chrY_paternal_624.1;source_gene=hg002_chrY_paternal_624;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_624;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_624.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_624.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;alternative_source_transcripts=hg002_chrY_paternal_624.1,hg002_chrY_paternal_624.1;transcript_id=HG003_chrY_T0000772;gene_id=HG003_chrY_G0000294;Parent=HG003_chrY_T0000772;transcript_name=hg002_chrY_paternal_624.1;gene_name=GOLGA2P3Y;ID=intron:HG003_chrY_T0000772:2;Name=GOLGA2P3Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	888541	888598	.	+	.	source_transcript=hg002_chrY_paternal_624.1;source_transcript_name=hg002_chrY_paternal_624.1;source_gene=hg002_chrY_paternal_624;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_624;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_624.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_624.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;alternative_source_transcripts=hg002_chrY_paternal_624.1,hg002_chrY_paternal_624.1;transcript_id=HG003_chrY_T0000772;gene_id=HG003_chrY_G0000294;Parent=HG003_chrY_T0000772;transcript_name=hg002_chrY_paternal_624.1;gene_name=GOLGA2P3Y;ID=exon:HG003_chrY_T0000772:3;Name=GOLGA2P3Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	888599	889954	.	+	.	source_transcript=hg002_chrY_paternal_624.1;source_transcript_name=hg002_chrY_paternal_624.1;source_gene=hg002_chrY_paternal_624;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_624;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_624.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_624.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;alternative_source_transcripts=hg002_chrY_paternal_624.1,hg002_chrY_paternal_624.1;transcript_id=HG003_chrY_T0000772;gene_id=HG003_chrY_G0000294;Parent=HG003_chrY_T0000772;transcript_name=hg002_chrY_paternal_624.1;gene_name=GOLGA2P3Y;ID=intron:HG003_chrY_T0000772:3;Name=GOLGA2P3Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	889955	890029	.	+	.	source_transcript=hg002_chrY_paternal_624.1;source_transcript_name=hg002_chrY_paternal_624.1;source_gene=hg002_chrY_paternal_624;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_624;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_624.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_624.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;alternative_source_transcripts=hg002_chrY_paternal_624.1,hg002_chrY_paternal_624.1;transcript_id=HG003_chrY_T0000772;gene_id=HG003_chrY_G0000294;Parent=HG003_chrY_T0000772;transcript_name=hg002_chrY_paternal_624.1;gene_name=GOLGA2P3Y;ID=exon:HG003_chrY_T0000772:4;Name=GOLGA2P3Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	890030	890449	.	+	.	source_transcript=hg002_chrY_paternal_624.1;source_transcript_name=hg002_chrY_paternal_624.1;source_gene=hg002_chrY_paternal_624;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_624;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_624.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_624.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;alternative_source_transcripts=hg002_chrY_paternal_624.1,hg002_chrY_paternal_624.1;transcript_id=HG003_chrY_T0000772;gene_id=HG003_chrY_G0000294;Parent=HG003_chrY_T0000772;transcript_name=hg002_chrY_paternal_624.1;gene_name=GOLGA2P3Y;ID=intron:HG003_chrY_T0000772:4;Name=GOLGA2P3Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	890450	890538	.	+	.	source_transcript=hg002_chrY_paternal_624.1;source_transcript_name=hg002_chrY_paternal_624.1;source_gene=hg002_chrY_paternal_624;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_624;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_624.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_624.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;alternative_source_transcripts=hg002_chrY_paternal_624.1,hg002_chrY_paternal_624.1;transcript_id=HG003_chrY_T0000772;gene_id=HG003_chrY_G0000294;Parent=HG003_chrY_T0000772;transcript_name=hg002_chrY_paternal_624.1;gene_name=GOLGA2P3Y;ID=exon:HG003_chrY_T0000772:5;Name=GOLGA2P3Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	890539	890793	.	+	.	source_transcript=hg002_chrY_paternal_624.1;source_transcript_name=hg002_chrY_paternal_624.1;source_gene=hg002_chrY_paternal_624;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_624;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_624.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_624.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;alternative_source_transcripts=hg002_chrY_paternal_624.1,hg002_chrY_paternal_624.1;transcript_id=HG003_chrY_T0000772;gene_id=HG003_chrY_G0000294;Parent=HG003_chrY_T0000772;transcript_name=hg002_chrY_paternal_624.1;gene_name=GOLGA2P3Y;ID=intron:HG003_chrY_T0000772:5;Name=GOLGA2P3Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	890794	890982	.	+	.	source_transcript=hg002_chrY_paternal_624.1;source_transcript_name=hg002_chrY_paternal_624.1;source_gene=hg002_chrY_paternal_624;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_624;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_624.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_624.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;alternative_source_transcripts=hg002_chrY_paternal_624.1,hg002_chrY_paternal_624.1;transcript_id=HG003_chrY_T0000772;gene_id=HG003_chrY_G0000294;Parent=HG003_chrY_T0000772;transcript_name=hg002_chrY_paternal_624.1;gene_name=GOLGA2P3Y;ID=exon:HG003_chrY_T0000772:6;Name=GOLGA2P3Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	890983	891071	.	+	.	source_transcript=hg002_chrY_paternal_624.1;source_transcript_name=hg002_chrY_paternal_624.1;source_gene=hg002_chrY_paternal_624;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_624;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_624.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_624.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;alternative_source_transcripts=hg002_chrY_paternal_624.1,hg002_chrY_paternal_624.1;transcript_id=HG003_chrY_T0000772;gene_id=HG003_chrY_G0000294;Parent=HG003_chrY_T0000772;transcript_name=hg002_chrY_paternal_624.1;gene_name=GOLGA2P3Y;ID=intron:HG003_chrY_T0000772:6;Name=GOLGA2P3Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	891072	891164	.	+	.	source_transcript=hg002_chrY_paternal_624.1;source_transcript_name=hg002_chrY_paternal_624.1;source_gene=hg002_chrY_paternal_624;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_624;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_624.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_624.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;alternative_source_transcripts=hg002_chrY_paternal_624.1,hg002_chrY_paternal_624.1;transcript_id=HG003_chrY_T0000772;gene_id=HG003_chrY_G0000294;Parent=HG003_chrY_T0000772;transcript_name=hg002_chrY_paternal_624.1;gene_name=GOLGA2P3Y;ID=exon:HG003_chrY_T0000772:7;Name=GOLGA2P3Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	891165	891246	.	+	.	source_transcript=hg002_chrY_paternal_624.1;source_transcript_name=hg002_chrY_paternal_624.1;source_gene=hg002_chrY_paternal_624;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_624;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_624.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_624.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;alternative_source_transcripts=hg002_chrY_paternal_624.1,hg002_chrY_paternal_624.1;transcript_id=HG003_chrY_T0000772;gene_id=HG003_chrY_G0000294;Parent=HG003_chrY_T0000772;transcript_name=hg002_chrY_paternal_624.1;gene_name=GOLGA2P3Y;ID=intron:HG003_chrY_T0000772:7;Name=GOLGA2P3Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	891247	891330	.	+	.	source_transcript=hg002_chrY_paternal_624.1;source_transcript_name=hg002_chrY_paternal_624.1;source_gene=hg002_chrY_paternal_624;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_624;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_624.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_624.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;alternative_source_transcripts=hg002_chrY_paternal_624.1,hg002_chrY_paternal_624.1;transcript_id=HG003_chrY_T0000772;gene_id=HG003_chrY_G0000294;Parent=HG003_chrY_T0000772;transcript_name=hg002_chrY_paternal_624.1;gene_name=GOLGA2P3Y;ID=exon:HG003_chrY_T0000772:8;Name=GOLGA2P3Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	893329	894859	.	-	.	source_gene_common_name=LOC102724034;source_gene=hg002_chrY_paternal_626;alternative_source_transcripts=hg002_chrY_paternal_626.1,hg002_chrY_paternal_626.1;gene_id=HG003_chrY_G0000295;gene_biotype=lncRNA;gene_name=LOC102724034;gene_sources=liftoff;ID=HG003_chrY_G0000295;Name=LOC102724034
HG003_chrY_random0000146	CAT	transcript	893329	894859	1000	-	.	source_transcript=hg002_chrY_paternal_626.1;source_transcript_name=hg002_chrY_paternal_626.1;source_gene=hg002_chrY_paternal_626;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_626;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_626.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_626.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724034;alternative_source_transcripts=hg002_chrY_paternal_626.1,hg002_chrY_paternal_626.1;transcript_id=HG003_chrY_T0000773;gene_id=HG003_chrY_G0000295;Parent=HG003_chrY_G0000295;transcript_name=hg002_chrY_paternal_626.1;gene_name=LOC102724034;ID=HG003_chrY_T0000773;Name=LOC102724034
HG003_chrY_random0000146	CAT	exon	893329	893752	.	-	.	source_transcript=hg002_chrY_paternal_626.1;source_transcript_name=hg002_chrY_paternal_626.1;source_gene=hg002_chrY_paternal_626;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_626;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_626.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_626.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724034;alternative_source_transcripts=hg002_chrY_paternal_626.1,hg002_chrY_paternal_626.1;transcript_id=HG003_chrY_T0000773;gene_id=HG003_chrY_G0000295;Parent=HG003_chrY_T0000773;transcript_name=hg002_chrY_paternal_626.1;gene_name=LOC102724034;ID=exon:HG003_chrY_T0000773:0;Name=LOC102724034;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	893753	894020	.	-	.	source_transcript=hg002_chrY_paternal_626.1;source_transcript_name=hg002_chrY_paternal_626.1;source_gene=hg002_chrY_paternal_626;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_626;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_626.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_626.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724034;alternative_source_transcripts=hg002_chrY_paternal_626.1,hg002_chrY_paternal_626.1;transcript_id=HG003_chrY_T0000773;gene_id=HG003_chrY_G0000295;Parent=HG003_chrY_T0000773;transcript_name=hg002_chrY_paternal_626.1;gene_name=LOC102724034;ID=intron:HG003_chrY_T0000773:0;Name=LOC102724034;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	894021	894145	.	-	.	source_transcript=hg002_chrY_paternal_626.1;source_transcript_name=hg002_chrY_paternal_626.1;source_gene=hg002_chrY_paternal_626;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_626;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_626.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_626.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724034;alternative_source_transcripts=hg002_chrY_paternal_626.1,hg002_chrY_paternal_626.1;transcript_id=HG003_chrY_T0000773;gene_id=HG003_chrY_G0000295;Parent=HG003_chrY_T0000773;transcript_name=hg002_chrY_paternal_626.1;gene_name=LOC102724034;ID=exon:HG003_chrY_T0000773:1;Name=LOC102724034;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	894146	894833	.	-	.	source_transcript=hg002_chrY_paternal_626.1;source_transcript_name=hg002_chrY_paternal_626.1;source_gene=hg002_chrY_paternal_626;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_626;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_626.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_626.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724034;alternative_source_transcripts=hg002_chrY_paternal_626.1,hg002_chrY_paternal_626.1;transcript_id=HG003_chrY_T0000773;gene_id=HG003_chrY_G0000295;Parent=HG003_chrY_T0000773;transcript_name=hg002_chrY_paternal_626.1;gene_name=LOC102724034;ID=intron:HG003_chrY_T0000773:1;Name=LOC102724034;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	894834	894859	.	-	.	source_transcript=hg002_chrY_paternal_626.1;source_transcript_name=hg002_chrY_paternal_626.1;source_gene=hg002_chrY_paternal_626;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_626;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_626.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_626.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724034;alternative_source_transcripts=hg002_chrY_paternal_626.1,hg002_chrY_paternal_626.1;transcript_id=HG003_chrY_T0000773;gene_id=HG003_chrY_G0000295;Parent=HG003_chrY_T0000773;transcript_name=hg002_chrY_paternal_626.1;gene_name=LOC102724034;ID=exon:HG003_chrY_T0000773:2;Name=LOC102724034;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	1053284	1056680	.	+	.	source_gene_common_name=CDY1;source_gene=hg002_chrY_paternal_638;alternative_source_transcripts=hg002_chrY_paternal_638.1,hg002_chrY_paternal_638.1;gene_id=HG003_chrY_G0000296;gene_biotype=protein_coding;gene_name=CDY1;gene_sources=liftoff,augTM;ID=HG003_chrY_G0000296;Name=CDY1
HG003_chrY_random0000146	CAT	transcript	1053284	1056071	100	+	.	source_transcript=hg002_chrY_paternal_638.1;source_transcript_name=hg002_chrY_paternal_638.4;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_638.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.1,hg002_chrY_paternal_638.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000774;gene_id=HG003_chrY_G0000296;Parent=HG003_chrY_G0000296;transcript_name=hg002_chrY_paternal_638.4;gene_name=CDY1;ID=HG003_chrY_T0000774;Name=CDY1
HG003_chrY_random0000146	CAT	exon	1053284	1055003	.	+	.	source_transcript=hg002_chrY_paternal_638.1;source_transcript_name=hg002_chrY_paternal_638.4;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_638.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.1,hg002_chrY_paternal_638.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000774;gene_id=HG003_chrY_G0000296;Parent=HG003_chrY_T0000774;transcript_name=hg002_chrY_paternal_638.4;gene_name=CDY1;ID=exon:HG003_chrY_T0000774:0;Name=CDY1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	1053612	1055003	.	+	0	source_transcript=hg002_chrY_paternal_638.1;source_transcript_name=hg002_chrY_paternal_638.4;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_638.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.1,hg002_chrY_paternal_638.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000774;gene_id=HG003_chrY_G0000296;Parent=HG003_chrY_T0000774;transcript_name=hg002_chrY_paternal_638.4;gene_name=CDY1;ID=CDS:HG003_chrY_T0000774:0;Name=CDY1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	start_codon	1053612	1053614	.	+	0	source_transcript=hg002_chrY_paternal_638.1;source_transcript_name=hg002_chrY_paternal_638.4;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_638.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.1,hg002_chrY_paternal_638.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000774;gene_id=HG003_chrY_G0000296;Parent=HG003_chrY_T0000774;transcript_name=hg002_chrY_paternal_638.4;gene_name=CDY1;ID=start_codon:HG003_chrY_T0000774;Name=CDY1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1055004	1055623	.	+	.	source_transcript=hg002_chrY_paternal_638.1;source_transcript_name=hg002_chrY_paternal_638.4;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_638.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.1,hg002_chrY_paternal_638.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000774;gene_id=HG003_chrY_G0000296;Parent=HG003_chrY_T0000774;transcript_name=hg002_chrY_paternal_638.4;gene_name=CDY1;ID=intron:HG003_chrY_T0000774:0;Name=CDY1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1055624	1056071	.	+	.	source_transcript=hg002_chrY_paternal_638.1;source_transcript_name=hg002_chrY_paternal_638.4;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_638.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.1,hg002_chrY_paternal_638.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000774;gene_id=HG003_chrY_G0000296;Parent=HG003_chrY_T0000774;transcript_name=hg002_chrY_paternal_638.4;gene_name=CDY1;ID=exon:HG003_chrY_T0000774:1;Name=CDY1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	1055624	1055644	.	+	0	source_transcript=hg002_chrY_paternal_638.1;source_transcript_name=hg002_chrY_paternal_638.4;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_638.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.1,hg002_chrY_paternal_638.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000774;gene_id=HG003_chrY_G0000296;Parent=HG003_chrY_T0000774;transcript_name=hg002_chrY_paternal_638.4;gene_name=CDY1;ID=CDS:HG003_chrY_T0000774:1;Name=CDY1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	stop_codon	1055642	1055644	.	+	0	source_transcript=hg002_chrY_paternal_638.1;source_transcript_name=hg002_chrY_paternal_638.4;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_638.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.1,hg002_chrY_paternal_638.1;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000774;gene_id=HG003_chrY_G0000296;Parent=HG003_chrY_T0000774;transcript_name=hg002_chrY_paternal_638.4;gene_name=CDY1;ID=stop_codon:HG003_chrY_T0000774;Name=CDY1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	1053286	1055507	100	+	.	source_transcript=hg002_chrY_paternal_638.2;source_transcript_name=hg002_chrY_paternal_638.4;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_638.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.2,hg002_chrY_paternal_638.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000775;gene_id=HG003_chrY_G0000296;Parent=HG003_chrY_G0000296;transcript_name=hg002_chrY_paternal_638.4;gene_name=CDY1;ID=HG003_chrY_T0000775;Name=CDY1
HG003_chrY_random0000146	CAT	exon	1053286	1055507	.	+	.	source_transcript=hg002_chrY_paternal_638.2;source_transcript_name=hg002_chrY_paternal_638.4;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_638.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.2,hg002_chrY_paternal_638.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000775;gene_id=HG003_chrY_G0000296;Parent=HG003_chrY_T0000775;transcript_name=hg002_chrY_paternal_638.4;gene_name=CDY1;ID=exon:HG003_chrY_T0000775:0;Name=CDY1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	1053612	1055234	.	+	0	source_transcript=hg002_chrY_paternal_638.2;source_transcript_name=hg002_chrY_paternal_638.4;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_638.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.2,hg002_chrY_paternal_638.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000775;gene_id=HG003_chrY_G0000296;Parent=HG003_chrY_T0000775;transcript_name=hg002_chrY_paternal_638.4;gene_name=CDY1;ID=CDS:HG003_chrY_T0000775:0;Name=CDY1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	start_codon	1053612	1053614	.	+	0	source_transcript=hg002_chrY_paternal_638.2;source_transcript_name=hg002_chrY_paternal_638.4;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_638.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.2,hg002_chrY_paternal_638.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000775;gene_id=HG003_chrY_G0000296;Parent=HG003_chrY_T0000775;transcript_name=hg002_chrY_paternal_638.4;gene_name=CDY1;ID=start_codon:HG003_chrY_T0000775;Name=CDY1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	stop_codon	1055232	1055234	.	+	0	source_transcript=hg002_chrY_paternal_638.2;source_transcript_name=hg002_chrY_paternal_638.4;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_638.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.2,hg002_chrY_paternal_638.2;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000775;gene_id=HG003_chrY_G0000296;Parent=HG003_chrY_T0000775;transcript_name=hg002_chrY_paternal_638.4;gene_name=CDY1;ID=stop_codon:HG003_chrY_T0000775;Name=CDY1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	1053286	1056071	100	+	.	source_transcript=hg002_chrY_paternal_638.3;source_transcript_name=hg002_chrY_paternal_638.4;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_638.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.3,hg002_chrY_paternal_638.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000776;gene_id=HG003_chrY_G0000296;Parent=HG003_chrY_G0000296;transcript_name=hg002_chrY_paternal_638.4;gene_name=CDY1;ID=HG003_chrY_T0000776;Name=CDY1
HG003_chrY_random0000146	CAT	exon	1053286	1055203	.	+	.	source_transcript=hg002_chrY_paternal_638.3;source_transcript_name=hg002_chrY_paternal_638.4;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_638.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.3,hg002_chrY_paternal_638.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000776;gene_id=HG003_chrY_G0000296;Parent=HG003_chrY_T0000776;transcript_name=hg002_chrY_paternal_638.4;gene_name=CDY1;ID=exon:HG003_chrY_T0000776:0;Name=CDY1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	1053612	1055203	.	+	0	source_transcript=hg002_chrY_paternal_638.3;source_transcript_name=hg002_chrY_paternal_638.4;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_638.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.3,hg002_chrY_paternal_638.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000776;gene_id=HG003_chrY_G0000296;Parent=HG003_chrY_T0000776;transcript_name=hg002_chrY_paternal_638.4;gene_name=CDY1;ID=CDS:HG003_chrY_T0000776:0;Name=CDY1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	start_codon	1053612	1053614	.	+	0	source_transcript=hg002_chrY_paternal_638.3;source_transcript_name=hg002_chrY_paternal_638.4;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_638.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.3,hg002_chrY_paternal_638.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000776;gene_id=HG003_chrY_G0000296;Parent=HG003_chrY_T0000776;transcript_name=hg002_chrY_paternal_638.4;gene_name=CDY1;ID=start_codon:HG003_chrY_T0000776;Name=CDY1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1055204	1055623	.	+	.	source_transcript=hg002_chrY_paternal_638.3;source_transcript_name=hg002_chrY_paternal_638.4;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_638.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.3,hg002_chrY_paternal_638.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000776;gene_id=HG003_chrY_G0000296;Parent=HG003_chrY_T0000776;transcript_name=hg002_chrY_paternal_638.4;gene_name=CDY1;ID=intron:HG003_chrY_T0000776:0;Name=CDY1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1055624	1056071	.	+	.	source_transcript=hg002_chrY_paternal_638.3;source_transcript_name=hg002_chrY_paternal_638.4;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_638.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.3,hg002_chrY_paternal_638.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000776;gene_id=HG003_chrY_G0000296;Parent=HG003_chrY_T0000776;transcript_name=hg002_chrY_paternal_638.4;gene_name=CDY1;ID=exon:HG003_chrY_T0000776:1;Name=CDY1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	1055624	1055696	.	+	1	source_transcript=hg002_chrY_paternal_638.3;source_transcript_name=hg002_chrY_paternal_638.4;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_638.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.3,hg002_chrY_paternal_638.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000776;gene_id=HG003_chrY_G0000296;Parent=HG003_chrY_T0000776;transcript_name=hg002_chrY_paternal_638.4;gene_name=CDY1;ID=CDS:HG003_chrY_T0000776:1;Name=CDY1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	stop_codon	1055694	1055696	.	+	0	source_transcript=hg002_chrY_paternal_638.3;source_transcript_name=hg002_chrY_paternal_638.4;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_638.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.3,hg002_chrY_paternal_638.3;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000776;gene_id=HG003_chrY_G0000296;Parent=HG003_chrY_T0000776;transcript_name=hg002_chrY_paternal_638.4;gene_name=CDY1;ID=stop_codon:HG003_chrY_T0000776;Name=CDY1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	1053286	1056680	1000	+	.	source_transcript=hg002_chrY_paternal_638.4;source_transcript_name=hg002_chrY_paternal_638.1;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_638.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.4,hg002_chrY_paternal_638.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000777;gene_id=HG003_chrY_G0000296;Parent=HG003_chrY_G0000296;transcript_name=hg002_chrY_paternal_638.1;gene_name=CDY1;ID=HG003_chrY_T0000777;Name=CDY1
HG003_chrY_random0000146	CAT	exon	1053286	1055203	.	+	.	source_transcript=hg002_chrY_paternal_638.4;source_transcript_name=hg002_chrY_paternal_638.1;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_638.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.4,hg002_chrY_paternal_638.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000777;gene_id=HG003_chrY_G0000296;Parent=HG003_chrY_T0000777;transcript_name=hg002_chrY_paternal_638.1;gene_name=CDY1;ID=exon:HG003_chrY_T0000777:0;Name=CDY1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1055204	1055623	.	+	.	source_transcript=hg002_chrY_paternal_638.4;source_transcript_name=hg002_chrY_paternal_638.1;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_638.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.4,hg002_chrY_paternal_638.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000777;gene_id=HG003_chrY_G0000296;Parent=HG003_chrY_T0000777;transcript_name=hg002_chrY_paternal_638.1;gene_name=CDY1;ID=intron:HG003_chrY_T0000777:0;Name=CDY1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1055624	1055823	.	+	.	source_transcript=hg002_chrY_paternal_638.4;source_transcript_name=hg002_chrY_paternal_638.1;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_638.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.4,hg002_chrY_paternal_638.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000777;gene_id=HG003_chrY_G0000296;Parent=HG003_chrY_T0000777;transcript_name=hg002_chrY_paternal_638.1;gene_name=CDY1;ID=exon:HG003_chrY_T0000777:1;Name=CDY1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1055824	1056598	.	+	.	source_transcript=hg002_chrY_paternal_638.4;source_transcript_name=hg002_chrY_paternal_638.1;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_638.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.4,hg002_chrY_paternal_638.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000777;gene_id=HG003_chrY_G0000296;Parent=HG003_chrY_T0000777;transcript_name=hg002_chrY_paternal_638.1;gene_name=CDY1;ID=intron:HG003_chrY_T0000777:1;Name=CDY1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1056599	1056680	.	+	.	source_transcript=hg002_chrY_paternal_638.4;source_transcript_name=hg002_chrY_paternal_638.1;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_638.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.4,hg002_chrY_paternal_638.4;AdditionalSources=augTM;transcript_id=HG003_chrY_T0000777;gene_id=HG003_chrY_G0000296;Parent=HG003_chrY_T0000777;transcript_name=hg002_chrY_paternal_638.1;gene_name=CDY1;ID=exon:HG003_chrY_T0000777:2;Name=CDY1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	1159664	1164559	.	+	.	source_gene_common_name=TTTY3B;source_gene=hg002_chrY_paternal_645;alternative_source_transcripts=hg002_chrY_paternal_645.1,hg002_chrY_paternal_645.1;gene_id=HG003_chrY_G0000297;gene_biotype=lncRNA;gene_name=TTTY3B;gene_sources=liftoff;ID=HG003_chrY_G0000297;Name=TTTY3B
HG003_chrY_random0000146	CAT	transcript	1159664	1164559	1000	+	.	source_transcript=hg002_chrY_paternal_645.1;source_transcript_name=hg002_chrY_paternal_645.1;source_gene=hg002_chrY_paternal_645;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_645;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_645.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_645.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY3B;alternative_source_transcripts=hg002_chrY_paternal_645.1,hg002_chrY_paternal_645.1;transcript_id=HG003_chrY_T0000778;gene_id=HG003_chrY_G0000297;Parent=HG003_chrY_G0000297;transcript_name=hg002_chrY_paternal_645.1;gene_name=TTTY3B;ID=HG003_chrY_T0000778;Name=TTTY3B
HG003_chrY_random0000146	CAT	exon	1159664	1159767	.	+	.	source_transcript=hg002_chrY_paternal_645.1;source_transcript_name=hg002_chrY_paternal_645.1;source_gene=hg002_chrY_paternal_645;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_645;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_645.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_645.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY3B;alternative_source_transcripts=hg002_chrY_paternal_645.1,hg002_chrY_paternal_645.1;transcript_id=HG003_chrY_T0000778;gene_id=HG003_chrY_G0000297;Parent=HG003_chrY_T0000778;transcript_name=hg002_chrY_paternal_645.1;gene_name=TTTY3B;ID=exon:HG003_chrY_T0000778:0;Name=TTTY3B;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1159768	1161965	.	+	.	source_transcript=hg002_chrY_paternal_645.1;source_transcript_name=hg002_chrY_paternal_645.1;source_gene=hg002_chrY_paternal_645;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_645;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_645.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_645.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY3B;alternative_source_transcripts=hg002_chrY_paternal_645.1,hg002_chrY_paternal_645.1;transcript_id=HG003_chrY_T0000778;gene_id=HG003_chrY_G0000297;Parent=HG003_chrY_T0000778;transcript_name=hg002_chrY_paternal_645.1;gene_name=TTTY3B;ID=intron:HG003_chrY_T0000778:0;Name=TTTY3B;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1161966	1162100	.	+	.	source_transcript=hg002_chrY_paternal_645.1;source_transcript_name=hg002_chrY_paternal_645.1;source_gene=hg002_chrY_paternal_645;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_645;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_645.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_645.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY3B;alternative_source_transcripts=hg002_chrY_paternal_645.1,hg002_chrY_paternal_645.1;transcript_id=HG003_chrY_T0000778;gene_id=HG003_chrY_G0000297;Parent=HG003_chrY_T0000778;transcript_name=hg002_chrY_paternal_645.1;gene_name=TTTY3B;ID=exon:HG003_chrY_T0000778:1;Name=TTTY3B;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1162101	1164454	.	+	.	source_transcript=hg002_chrY_paternal_645.1;source_transcript_name=hg002_chrY_paternal_645.1;source_gene=hg002_chrY_paternal_645;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_645;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_645.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_645.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY3B;alternative_source_transcripts=hg002_chrY_paternal_645.1,hg002_chrY_paternal_645.1;transcript_id=HG003_chrY_T0000778;gene_id=HG003_chrY_G0000297;Parent=HG003_chrY_T0000778;transcript_name=hg002_chrY_paternal_645.1;gene_name=TTTY3B;ID=intron:HG003_chrY_T0000778:1;Name=TTTY3B;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1164455	1164559	.	+	.	source_transcript=hg002_chrY_paternal_645.1;source_transcript_name=hg002_chrY_paternal_645.1;source_gene=hg002_chrY_paternal_645;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_645;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_645.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_645.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY3B;alternative_source_transcripts=hg002_chrY_paternal_645.1,hg002_chrY_paternal_645.1;transcript_id=HG003_chrY_T0000778;gene_id=HG003_chrY_G0000297;Parent=HG003_chrY_T0000778;transcript_name=hg002_chrY_paternal_645.1;gene_name=TTTY3B;ID=exon:HG003_chrY_T0000778:2;Name=TTTY3B;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	1460508	1463632	.	-	.	source_gene_common_name=LOC107987352;source_gene=hg002_chrY_paternal_665;alternative_source_transcripts=hg002_chrY_paternal_665.1,hg002_chrY_paternal_665.1;gene_id=HG003_chrY_G0000298;gene_biotype=lncRNA;gene_name=LOC107987352;gene_sources=liftoff;ID=HG003_chrY_G0000298;Name=LOC107987352
HG003_chrY_random0000146	CAT	transcript	1460508	1463632	1000	-	.	source_transcript=hg002_chrY_paternal_665.1;source_transcript_name=hg002_chrY_paternal_665.1;source_gene=hg002_chrY_paternal_665;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_665;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_665.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_665.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987352;alternative_source_transcripts=hg002_chrY_paternal_665.1,hg002_chrY_paternal_665.1;transcript_id=HG003_chrY_T0000779;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_G0000298;transcript_name=hg002_chrY_paternal_665.1;gene_name=LOC107987352;ID=HG003_chrY_T0000779;Name=LOC107987352
HG003_chrY_random0000146	CAT	exon	1460508	1461836	.	-	.	source_transcript=hg002_chrY_paternal_665.1;source_transcript_name=hg002_chrY_paternal_665.1;source_gene=hg002_chrY_paternal_665;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_665;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_665.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_665.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987352;alternative_source_transcripts=hg002_chrY_paternal_665.1,hg002_chrY_paternal_665.1;transcript_id=HG003_chrY_T0000779;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000779;transcript_name=hg002_chrY_paternal_665.1;gene_name=LOC107987352;ID=exon:HG003_chrY_T0000779:0;Name=LOC107987352;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1461837	1463371	.	-	.	source_transcript=hg002_chrY_paternal_665.1;source_transcript_name=hg002_chrY_paternal_665.1;source_gene=hg002_chrY_paternal_665;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_665;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_665.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_665.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987352;alternative_source_transcripts=hg002_chrY_paternal_665.1,hg002_chrY_paternal_665.1;transcript_id=HG003_chrY_T0000779;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000779;transcript_name=hg002_chrY_paternal_665.1;gene_name=LOC107987352;ID=intron:HG003_chrY_T0000779:0;Name=LOC107987352;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1463372	1463432	.	-	.	source_transcript=hg002_chrY_paternal_665.1;source_transcript_name=hg002_chrY_paternal_665.1;source_gene=hg002_chrY_paternal_665;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_665;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_665.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_665.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987352;alternative_source_transcripts=hg002_chrY_paternal_665.1,hg002_chrY_paternal_665.1;transcript_id=HG003_chrY_T0000779;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000779;transcript_name=hg002_chrY_paternal_665.1;gene_name=LOC107987352;ID=exon:HG003_chrY_T0000779:1;Name=LOC107987352;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1463433	1463549	.	-	.	source_transcript=hg002_chrY_paternal_665.1;source_transcript_name=hg002_chrY_paternal_665.1;source_gene=hg002_chrY_paternal_665;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_665;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_665.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_665.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987352;alternative_source_transcripts=hg002_chrY_paternal_665.1,hg002_chrY_paternal_665.1;transcript_id=HG003_chrY_T0000779;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000779;transcript_name=hg002_chrY_paternal_665.1;gene_name=LOC107987352;ID=intron:HG003_chrY_T0000779:1;Name=LOC107987352;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1463550	1463632	.	-	.	source_transcript=hg002_chrY_paternal_665.1;source_transcript_name=hg002_chrY_paternal_665.1;source_gene=hg002_chrY_paternal_665;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_665;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_665.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_665.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987352;alternative_source_transcripts=hg002_chrY_paternal_665.1,hg002_chrY_paternal_665.1;transcript_id=HG003_chrY_T0000779;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000779;transcript_name=hg002_chrY_paternal_665.1;gene_name=LOC107987352;ID=exon:HG003_chrY_T0000779:2;Name=LOC107987352;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	1624544	1629133	.	-	.	source_gene_common_name=REREP2Y;source_gene=hg002_chrY_paternal_668;gene_id=HG003_chrY_G0000299;gene_biotype=transcribed_pseudogene;gene_name=REREP2Y;gene_sources=transMap;ID=HG003_chrY_G0000299;Name=REREP2Y
HG003_chrY_random0000146	CAT	transcript	1624544	1629133	1000	-	.	source_transcript=hg002_chrY_paternal_668.1;source_transcript_name=hg002_chrY_paternal_668.1;source_gene=hg002_chrY_paternal_668;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_668;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_668.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_668.1;transcript_score=190.60399999999998;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=REREP2Y;transcript_id=HG003_chrY_T0000780;gene_id=HG003_chrY_G0000299;Parent=HG003_chrY_G0000299;transcript_name=hg002_chrY_paternal_668.1;gene_name=REREP2Y;ID=HG003_chrY_T0000780;Name=REREP2Y
HG003_chrY_random0000146	CAT	exon	1624544	1629133	.	-	.	source_transcript=hg002_chrY_paternal_668.1;source_transcript_name=hg002_chrY_paternal_668.1;source_gene=hg002_chrY_paternal_668;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_668;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_668.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_668.1;transcript_score=190.60399999999998;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=REREP2Y;transcript_id=HG003_chrY_T0000780;gene_id=HG003_chrY_G0000299;Parent=HG003_chrY_T0000780;transcript_name=hg002_chrY_paternal_668.1;gene_name=REREP2Y;ID=exon:HG003_chrY_T0000780:0;Name=REREP2Y;rna_support=False;reference_support=False